Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 70 of 343
Found at i:22834672 original size:12 final size:12
Alignment explanation
Indices: 22834654--22834687 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
22834644 GAGCAGGGAA
22834654 AGAAAGAAAAAG
1 AGAAAGAAAAAG
*
22834666 GGAAAGAAAAAG
1 AGAAAGAAAAAG
*
22834678 AAAAAGAAAA
1 AGAAAGAAAA
22834688 TTTAGGGTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (12 bp):
AGAAAGAAAAAG
Found at i:22836840 original size:31 final size:30
Alignment explanation
Indices: 22836802--22836860 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
22836792 CACCCTTAAA
* * *
22836802 ATATTTACACTATTACTCCTTCAACTTTTTC
1 ATATTTACACT-TTAATCCCTCAAATTTTTC
22836833 ATATTTACACTTTAATCCCTCAAATTTT
1 ATATTTACACTTTAATCCCTCAAATTTT
22836861 GAGTATTTAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 14 0.56
31 11 0.44
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.47
Consensus pattern (30 bp):
ATATTTACACTTTAATCCCTCAAATTTTTC
Found at i:22836870 original size:30 final size:31
Alignment explanation
Indices: 22836802--22836870 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 31
22836792 CACCCTTAAA
* * *
22836802 ATATTTACACTATTACTCCTTCAACTTTTTC
1 ATATTTACACTATTAATCCCTCAACATTTTC
*
22836833 ATATTTACACT-TTAATCCCTCAA-ATTTTG
1 ATATTTACACTATTAATCCCTCAACATTTTC
22836862 AGTATTTAC
1 A-TATTTAC
22836871 TCTTGGGCCA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 5 0.15
30 17 0.52
31 11 0.33
ACGTcount: A:0.29, C:0.22, G:0.03, T:0.46
Consensus pattern (31 bp):
ATATTTACACTATTAATCCCTCAACATTTTC
Found at i:22837094 original size:18 final size:19
Alignment explanation
Indices: 22837071--22837109 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
22837061 TGGAATTAAG
*
22837071 AATTGAAATGTGA-ATTGA
1 AATTGAAATATGAGATTGA
*
22837089 AATTGAGATATGAGATTGA
1 AATTGAAATATGAGATTGA
22837108 AA
1 AA
22837110 GCTTGAACCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.46, C:0.00, G:0.23, T:0.31
Consensus pattern (19 bp):
AATTGAAATATGAGATTGA
Found at i:22838502 original size:23 final size:23
Alignment explanation
Indices: 22838476--22838525 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 23
22838466 TGATGTTGGT
22838476 GATATTTTATAATTATTTAATTA
1 GATATTTTATAATTATTTAATTA
*
22838499 GATA----ATAATTATTTATTTA
1 GATATTTTATAATTATTTAATTA
22838518 -ATATTTTA
1 GATATTTTA
22838526 ATAAGATAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 9
0.69 0.03 0.28
Matches are distributed among these distances:
18 3 0.14
19 14 0.64
22 1 0.05
23 4 0.18
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (23 bp):
GATATTTTATAATTATTTAATTA
Found at i:22842960 original size:30 final size:29
Alignment explanation
Indices: 22842919--22843020 Score: 116
Period size: 30 Copynumber: 3.4 Consensus size: 29
22842909 GTTGCTCTGG
* *
22842919 GTGAAATGAACTCGAACTGCCTATGTCCGA
1 GTGATATGAACTCGAACCGCC-ATGTCCGA
*
22842949 GTGATATGAACTCGAACCGTCCATGTCCGG
1 GTGATATGAACTCGAACCG-CCATGTCCGA
**
22842979 GTGATATGAACTTAAACCGCCCATGTCC-A
1 GTGATATGAACTCGAACCG-CCATGTCCGA
22843008 GGTGATATGAACT
1 -GTGATATGAACT
22843021 GCTCTGCGAC
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
30 61 0.97
31 2 0.03
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.25
Consensus pattern (29 bp):
GTGATATGAACTCGAACCGCCATGTCCGA
Found at i:22845986 original size:22 final size:21
Alignment explanation
Indices: 22845959--22846010 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
22845949 AAATATTTAA
*
22845959 ATATTTTATATTATTAAAAAAT
1 ATATTTTAAATT-TTAAAAAAT
*
22845981 ATATTTAAAATTTTAAAAAAT
1 ATATTTTAAATTTTAAAAAAT
22846002 A-ATTTTAAA
1 ATATTTTAAA
22846011 AATATATATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
20 7 0.26
21 10 0.37
22 10 0.37
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (21 bp):
ATATTTTAAATTTTAAAAAAT
Found at i:22845996 original size:21 final size:21
Alignment explanation
Indices: 22845972--22846045 Score: 65
Period size: 21 Copynumber: 3.9 Consensus size: 21
22845962 TTTTATATTA
22845972 TTAAAAAATATATTTAAAATT
1 TTAAAAAATATATTTAAAATT
22845993 TTAAAAAATA-A--T----TT
1 TTAAAAAATATATTTAAAATT
* *
22846007 TAAAAATATATATTTAAAATT
1 TTAAAAAATATATTTAAAATT
22846028 TT-AAAAATATATTATAAA
1 TTAAAAAATATATT-TAAA
22846046 GCATTTCAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 16
0.67 0.07 0.26
Matches are distributed among these distances:
14 10 0.24
15 1 0.02
17 1 0.02
18 1 0.02
20 11 0.27
21 17 0.41
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (21 bp):
TTAAAAAATATATTTAAAATT
Found at i:22846051 original size:23 final size:22
Alignment explanation
Indices: 22846002--22846059 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
22845992 TTTAAAAAAT
*
22846002 AATTTTAAAAATATATATTTAA
1 AATTTTAAAAATATATATATAA
22846024 AATTTTAAAAATATAT-TATAA
1 AATTTTAAAAATATATATATAA
*
22846045 AGCATTTCAAAAATA
1 A--ATTTTAAAAATA
22846060 AATTTCAAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
21 5 0.16
22 16 0.50
23 11 0.34
ACGTcount: A:0.55, C:0.03, G:0.02, T:0.40
Consensus pattern (22 bp):
AATTTTAAAAATATATATATAA
Found at i:22846102 original size:24 final size:23
Alignment explanation
Indices: 22846074--22846123 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
22846064 TCAAGTTTTT
*
22846074 TAAAATCAATAATAAACAAATAAA
1 TAAAATAAATAA-AAACAAATAAA
**
22846098 TAAAATAAATAAGGACAAATAAA
1 TAAAATAAATAAAAACAAATAAA
22846121 TAA
1 TAA
22846124 GGACAAATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 12 0.52
24 11 0.48
ACGTcount: A:0.70, C:0.06, G:0.04, T:0.20
Consensus pattern (23 bp):
TAAAATAAATAAAAACAAATAAA
Found at i:22846119 original size:14 final size:14
Alignment explanation
Indices: 22846100--22846134 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
22846090 CAAATAAATA
22846100 AAATAAATAAGGAC
1 AAATAAATAAGGAC
22846114 AAATAAATAAGGAC
1 AAATAAATAAGGAC
22846128 AAATAAA
1 AAATAAA
22846135 AAACTTTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.69, C:0.06, G:0.11, T:0.14
Consensus pattern (14 bp):
AAATAAATAAGGAC
Found at i:22846173 original size:26 final size:23
Alignment explanation
Indices: 22846128--22846186 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 23
22846118 AAATAAGGAC
*
22846128 AAATAAAAAACTTTAAAAAAGTAAA
1 AAAT-AAAAACTTAAAAAAAG-AAA
22846153 TAAATAAAAACTTAAAAAAAAGAAA
1 -AAATAAAAACTT-AAAAAAAGAAA
22846178 AAAGTAAAA
1 AAA-TAAAA
22846187 GGACAATTCA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
24 3 0.10
25 16 0.53
26 11 0.37
ACGTcount: A:0.75, C:0.03, G:0.05, T:0.17
Consensus pattern (23 bp):
AAATAAAAACTTAAAAAAAGAAA
Found at i:22847914 original size:27 final size:26
Alignment explanation
Indices: 22847877--22847992 Score: 151
Period size: 27 Copynumber: 4.3 Consensus size: 26
22847867 AGCATGGCTG
* *
22847877 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
22847903 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
22847931 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
22847958 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
22847985 CCAGAACA
1 CCAGAACA
22847993 CTTCCTCCAT
Statistics
Matches: 81, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
26 5 0.06
27 59 0.73
28 17 0.21
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:22847941 original size:54 final size:54
Alignment explanation
Indices: 22847877--22847992 Score: 171
Period size: 54 Copynumber: 2.1 Consensus size: 54
22847867 AGCATGGCTG
*
22847877 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * *
22847931 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
22847985 CCAGAACA
1 CCAGAACA
22847993 CTTCCTCCAT
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 38 0.68
55 18 0.32
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.16
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:22849072 original size:32 final size:32
Alignment explanation
Indices: 22849031--22849095 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
22849021 AAGTCACGTT
22849031 ACTGCTGCTGTCCCAAGCAGATTTATTACCAA
1 ACTGCTGCTGTCCCAAGCAGATTTATTACCAA
22849063 ACTGCTGCTGTCCCAAGCAGATTTATTACCAA
1 ACTGCTGCTGTCCCAAGCAGATTTATTACCAA
22849095 A
1 A
22849096 TCACTCTTTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (32 bp):
ACTGCTGCTGTCCCAAGCAGATTTATTACCAA
Found at i:22849702 original size:26 final size:25
Alignment explanation
Indices: 22849633--22849740 Score: 180
Period size: 25 Copynumber: 4.2 Consensus size: 25
22849623 CATGAAATTC
22849633 TTATCATGAAACATTTACCTAACCCA
1 TTATCATG-AACATTTACCTAACCCA
22849659 TTATCATGAACATTTACCTAACCCA
1 TTATCATGAACATTTACCTAACCCA
*
22849684 TTATCATGGAACATTTACCTAACCTA
1 TTATCAT-GAACATTTACCTAACCCA
*
22849710 TTATCATGAACATTTACCTAACCTA
1 TTATCATGAACATTTACCTAACCCA
22849735 TTATCA
1 TTATCA
22849741 ATTTGTACCA
Statistics
Matches: 80, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
25 48 0.60
26 32 0.40
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (25 bp):
TTATCATGAACATTTACCTAACCCA
Found at i:22849713 original size:51 final size:51
Alignment explanation
Indices: 22849633--22849740 Score: 189
Period size: 51 Copynumber: 2.1 Consensus size: 51
22849623 CATGAAATTC
22849633 TTATCATGAAACATTTACCTAACCCATTATCATGAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCATTATCATGAACATTTACCTAACCCA
* * *
22849684 TTATCATGGAACATTTACCTAACCTATTATCATGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCATTATCATGAACATTTACCTAACCCA
22849735 TTATCA
1 TTATCA
22849741 ATTTGTACCA
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (51 bp):
TTATCATGAAACATTTACCTAACCCATTATCATGAACATTTACCTAACCCA
Found at i:22853712 original size:27 final size:27
Alignment explanation
Indices: 22853681--22853741 Score: 106
Period size: 27 Copynumber: 2.3 Consensus size: 27
22853671 AGCATGGATG
22853681 CCAGAACAGATA-ATCGTGGCAGAGCCA
1 CCAGAACAGATATAT-GTGGCAGAGCCA
22853708 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCA
22853735 CCAGAAC
1 CCAGAAC
22853742 GCTTCCTCCA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
27 31 0.94
28 2 0.06
ACGTcount: A:0.38, C:0.26, G:0.25, T:0.11
Consensus pattern (27 bp):
CCAGAACAGATATATGTGGCAGAGCCA
Found at i:22855387 original size:26 final size:26
Alignment explanation
Indices: 22855357--22855466 Score: 159
Period size: 26 Copynumber: 4.2 Consensus size: 26
22855347 CATGAAATTT
*
22855357 TTATCATGAAAGATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
22855383 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
22855409 TTATCATGGAACGTTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
22855435 TTATCATTG-AACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCCA
22855461 TTATCA
1 TTATCA
22855467 ATTTGTACCA
Statistics
Matches: 78, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
26 76 0.97
27 2 0.03
ACGTcount: A:0.35, C:0.24, G:0.06, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:22856436 original size:11 final size:11
Alignment explanation
Indices: 22856420--22856469 Score: 57
Period size: 11 Copynumber: 4.6 Consensus size: 11
22856410 AAAAAACTAT
22856420 TTTTCTTACTG
1 TTTTCTTACTG
22856431 TTTTCTTACT-
1 TTTTCTTACTG
* *
22856441 TTTTTTTATTG
1 TTTTCTTACTG
* *
22856452 TTTTCTTGCTA
1 TTTTCTTACTG
22856463 TTTTCTT
1 TTTTCTT
22856470 GTTATTTTTT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
10 8 0.25
11 24 0.75
ACGTcount: A:0.08, C:0.14, G:0.06, T:0.72
Consensus pattern (11 bp):
TTTTCTTACTG
Found at i:22856453 original size:21 final size:21
Alignment explanation
Indices: 22856419--22856469 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
22856409 AAAAAAACTA
22856419 TTTTTCTTACTGTTTTCTTAC
1 TTTTTCTTACTGTTTTCTTAC
* * *
22856440 TTTTTTTTATTGTTTTCTTGC
1 TTTTTCTTACTGTTTTCTTAC
22856461 TATTTTCTT
1 T-TTTTCTT
22856470 GTTATTTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
21 19 0.76
22 6 0.24
ACGTcount: A:0.08, C:0.14, G:0.06, T:0.73
Consensus pattern (21 bp):
TTTTTCTTACTGTTTTCTTAC
Found at i:22868089 original size:13 final size:13
Alignment explanation
Indices: 22868073--22868138 Score: 89
Period size: 13 Copynumber: 5.1 Consensus size: 13
22868063 TTTAAACTAA
*
22868073 ACTTTTCAAAAGT
1 ACTTTTCAAAAGC
*
22868086 ACTTCTCAAAAGC
1 ACTTTTCAAAAGC
*
22868099 ACTTTTTC-ACAGC
1 AC-TTTTCAAAAGC
22868112 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
22868125 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
22868138 A
1 A
22868139 TTGCCAAACT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
12 5 0.11
13 37 0.80
14 4 0.09
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.32
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:22873910 original size:20 final size:19
Alignment explanation
Indices: 22873887--22873926 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
22873877 TTAGTTTTAA
22873887 TTAATCTTAATTAATTAAGT
1 TTAATCTTAA-TAATTAAGT
* *
22873907 TTAATTTTAATAATTTAGT
1 TTAATCTTAATAATTAAGT
22873926 T
1 T
22873927 ATTAATTAGC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.38, C:0.03, G:0.05, T:0.55
Consensus pattern (19 bp):
TTAATCTTAATAATTAAGT
Found at i:22874639 original size:5 final size:5
Alignment explanation
Indices: 22874620--22874657 Score: 53
Period size: 5 Copynumber: 7.8 Consensus size: 5
22874610 ATAAATAAGA
22874620 ATATT AT-TAT ATATT ATATT ATATT ATA-T ATATT ATAT
1 ATATT ATAT-T ATATT ATATT ATATT ATATT ATATT ATAT
22874658 AAATAGGTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
4 5 0.17
5 24 0.80
6 1 0.03
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
ATATT
Found at i:22875410 original size:13 final size:13
Alignment explanation
Indices: 22875394--22875421 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
22875384 CGATCTCTTC
22875394 TGGGTATTCTATA
1 TGGGTATTCTATA
22875407 TGGGTATTCTATA
1 TGGGTATTCTATA
22875420 TG
1 TG
22875422 TTCTTTTATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.07, G:0.25, T:0.46
Consensus pattern (13 bp):
TGGGTATTCTATA
Found at i:22877717 original size:12 final size:12
Alignment explanation
Indices: 22877700--22877732 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
22877690 ATAAGAATAT
22877700 TATTATATATTA
1 TATTATATATTA
*
22877712 TATTATATTTTA
1 TATTATATATTA
22877724 TATTATATA
1 TATTATATA
22877733 AATAGGTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (12 bp):
TATTATATATTA
Found at i:22891103 original size:9 final size:9
Alignment explanation
Indices: 22891053--22891146 Score: 59
Period size: 9 Copynumber: 9.9 Consensus size: 9
22891043 AATAATAAAA
*
22891053 AATTTCTAT
1 AATTTTTAT
22891062 AATTTTTTAT
1 AA-TTTTTAT
22891072 AATGTTTT-T
1 AAT-TTTTAT
22891081 AACTTTTTAAAT
1 AA-TTTTT--AT
22891093 AATTTTTAT
1 AATTTTTAT
*
22891102 AA-TTGTAT
1 AATTTTTAT
22891110 -ATTTTATAT
1 AATTTT-TAT
*
22891119 AAATTTTAT
1 AATTTTTAT
*
22891128 ACTTTTTTTAT
1 A--ATTTTTAT
22891139 AATTTTTA
1 AATTTTTA
22891147 ATACATTTTA
Statistics
Matches: 67, Mismatches: 7, Indels: 22
0.70 0.07 0.23
Matches are distributed among these distances:
7 1 0.01
8 7 0.10
9 27 0.40
10 17 0.25
11 12 0.18
12 3 0.04
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (9 bp):
AATTTTTAT
Found at i:22896123 original size:23 final size:23
Alignment explanation
Indices: 22896096--22896140 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
22896086 GCTATATTTT
22896096 TCCTAAACATTATCACTAAATAA
1 TCCTAAACATTATCACTAAATAA
*
22896119 TCCTAAATATTATCACTAAATA
1 TCCTAAACATTATCACTAAATA
22896141 TTATCATTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.47, C:0.20, G:0.00, T:0.33
Consensus pattern (23 bp):
TCCTAAACATTATCACTAAATAA
Found at i:22896139 original size:13 final size:13
Alignment explanation
Indices: 22896098--22896151 Score: 69
Period size: 13 Copynumber: 4.4 Consensus size: 13
22896088 TATATTTTTC
*
22896098 CTAAACATTATCA
1 CTAAATATTATCA
22896111 CTAAATA--ATC-
1 CTAAATATTATCA
22896121 CTAAATATTATCA
1 CTAAATATTATCA
22896134 CTAAATATTATCA
1 CTAAATATTATCA
*
22896147 TTAAA
1 CTAAA
22896152 CAATTCAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
10 7 0.19
11 3 0.08
12 3 0.08
13 23 0.64
ACGTcount: A:0.48, C:0.17, G:0.00, T:0.35
Consensus pattern (13 bp):
CTAAATATTATCA
Found at i:22896731 original size:14 final size:14
Alignment explanation
Indices: 22896712--22896738 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
22896702 AATATATACT
22896712 TTTATTTATTTTTG
1 TTTATTTATTTTTG
22896726 TTTATTTATTTTT
1 TTTATTTATTTTT
22896739 TCAAACGTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.04, T:0.81
Consensus pattern (14 bp):
TTTATTTATTTTTG
Found at i:22903231 original size:55 final size:55
Alignment explanation
Indices: 22903110--22903237 Score: 141
Period size: 55 Copynumber: 2.3 Consensus size: 55
22903100 TGTGACATGG
* ** *
22903110 CCGTGGTCGAACCTGCCAAAACAACACGGGCGTGTGACACGCCCGTGTGGAAGAA
1 CCGTGGTTGAACCTGTTAAAACAACACGGGCGTGTGACACGCCCGTGTGCAAGAA
* * * * * *
22903165 TCGTGGGTGAACCTGTTAAAACAGCACGGGCGTGTGACACGCTCGTGT-CTAGCAC
1 CCGTGGTTGAACCTGTTAAAACAACACGGGCGTGTGACACGCCCGTGTGCAAG-AA
*
22903220 CCGTGGTTGAACTTGTTA
1 CCGTGGTTGAACCTGTTA
22903238 GATTGACACG
Statistics
Matches: 59, Mismatches: 13, Indels: 2
0.80 0.18 0.03
Matches are distributed among these distances:
54 2 0.03
55 57 0.97
ACGTcount: A:0.23, C:0.26, G:0.30, T:0.20
Consensus pattern (55 bp):
CCGTGGTTGAACCTGTTAAAACAACACGGGCGTGTGACACGCCCGTGTGCAAGAA
Found at i:22907910 original size:96 final size:96
Alignment explanation
Indices: 22907744--22907924 Score: 272
Period size: 96 Copynumber: 1.9 Consensus size: 96
22907734 GTGTCCGAGG
* ** * * *
22907744 AAGTCTGTCATCGATGGGAACGATAGAGTAGATACGGAGCCCAAGAAGCTTAGTTCGAGCAAGGG
1 AAGTCTGTCATCGAAGGGAACGATAGAACAGACAAGGAGCCCAAGAAGCTTAGTTAGAGCAAGGG
22907809 GAAAGCCGAAGCCAAGAGGGAAAAGATAAGC
66 GAAAGCCGAAGCCAAGAGGGAAAAGATAAGC
* * *
22907840 AAGTCTGTCATCGAAGGGAACGATGGAACAGACAATGAGCCCAAGAAGCTTGGTTAGAGCAAGGG
1 AAGTCTGTCATCGAAGGGAACGATAGAACAGACAAGGAGCCCAAGAAGCTTAGTTAGAGCAAGGG
*
22907905 TAAAGCCGAAGCCAAGAGGG
66 GAAAGCCGAAGCCAAGAGGG
22907925 CTAAGAGGAG
Statistics
Matches: 75, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
96 75 1.00
ACGTcount: A:0.37, C:0.17, G:0.33, T:0.13
Consensus pattern (96 bp):
AAGTCTGTCATCGAAGGGAACGATAGAACAGACAAGGAGCCCAAGAAGCTTAGTTAGAGCAAGGG
GAAAGCCGAAGCCAAGAGGGAAAAGATAAGC
Found at i:22918403 original size:5 final size:5
Alignment explanation
Indices: 22918393--22918419 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
22918383 TGAAAAGGAA
22918393 AAAAG AAAAG AAAAG AAAAG AAAAG AA
1 AAAAG AAAAG AAAAG AAAAG AAAAG AA
22918420 TTTATTAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:22918538 original size:13 final size:13
Alignment explanation
Indices: 22918520--22918563 Score: 58
Period size: 13 Copynumber: 3.6 Consensus size: 13
22918510 CTAGATTTTT
22918520 ACTAAATATTATC
1 ACTAAATATTATC
22918533 ACTAAATA--AT-
1 ACTAAATATTATC
*
22918543 TCTAAATATTATC
1 ACTAAATATTATC
22918556 ACTAAATA
1 ACTAAATA
22918564 ATTCAAAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
10 7 0.27
11 2 0.08
12 2 0.08
13 15 0.58
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (13 bp):
ACTAAATATTATC
Found at i:22918551 original size:23 final size:23
Alignment explanation
Indices: 22918521--22918572 Score: 95
Period size: 23 Copynumber: 2.3 Consensus size: 23
22918511 TAGATTTTTA
22918521 CTAAATATTATCACTAAATAATT
1 CTAAATATTATCACTAAATAATT
22918544 CTAAATATTATCACTAAATAATT
1 CTAAATATTATCACTAAATAATT
*
22918567 CAAAAT
1 CTAAAT
22918573 TTAAAAATCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.50, C:0.13, G:0.00, T:0.37
Consensus pattern (23 bp):
CTAAATATTATCACTAAATAATT
Found at i:22923677 original size:21 final size:21
Alignment explanation
Indices: 22923629--22923678 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
22923619 GAAGCTCAAA
*
22923629 AGAGCTAAACAAAAACCCATT
1 AGAGTTAAACAAAAACCCATT
* *
22923650 AGGGTTAAACAAAAACTCATAT
1 AGAGTTAAACAAAAACCCAT-T
22923672 A-AGTTAA
1 AGAGTTAA
22923679 CTAAAGCTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
21 22 0.92
22 2 0.08
ACGTcount: A:0.52, C:0.16, G:0.12, T:0.20
Consensus pattern (21 bp):
AGAGTTAAACAAAAACCCATT
Found at i:22949103 original size:49 final size:50
Alignment explanation
Indices: 22949047--22949148 Score: 197
Period size: 50 Copynumber: 2.1 Consensus size: 50
22949037 TGAGGGGGTC
22949047 AAACAAAAATTCTTTC-TTTTTAAACACTAATTATATATCAAAACAAAAA
1 AAACAAAAATTCTTTCTTTTTTAAACACTAATTATATATCAAAACAAAAA
22949096 AAACAAAAATTCTTTCTTTTTTAAACACTAATTATATATCAAAACAAAAA
1 AAACAAAAATTCTTTCTTTTTTAAACACTAATTATATATCAAAACAAAAA
22949146 AAA
1 AAA
22949149 ATTAAAAATT
Statistics
Matches: 52, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
49 16 0.31
50 36 0.69
ACGTcount: A:0.54, C:0.14, G:0.00, T:0.32
Consensus pattern (50 bp):
AAACAAAAATTCTTTCTTTTTTAAACACTAATTATATATCAAAACAAAAA
Found at i:22963689 original size:43 final size:42
Alignment explanation
Indices: 22963526--22963689 Score: 145
Period size: 43 Copynumber: 3.8 Consensus size: 42
22963516 AGCTCGTACA
* * * * *
22963526 ATGCCAACATCCCAGACGTGGTCATACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCTAA-ATCG
*
22963569 ATGCC-ACTGTCCCAGACAG-GGTCTTACATGAAATCT-AATACG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGAAATCTAAAT-CG
* * * * *
22963611 ATGTCGATGTCCCAGACATGGTCTTACACATAAATCTCAAATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACAC-GAAATCT-AAATCG
*
22963655 ATGCCAACGTCCCAAACGTGGTCTTACACGAAATC
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAATC
22963690 ACATATCGGA
Statistics
Matches: 98, Mismatches: 15, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
41 2 0.02
42 27 0.28
43 39 0.40
44 27 0.28
45 3 0.03
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCTAAATCG
Found at i:22965471 original size:25 final size:25
Alignment explanation
Indices: 22965429--22965477 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
22965419 TCTAACACTT
*
22965429 TTGGTATAAGTTAGAAATATTGGTA
1 TTGGTATAAGTTAAAAATATTGGTA
* *
22965454 TTGGTATAATTTAAAAATTTTGGT
1 TTGGTATAAGTTAAAAATATTGGT
22965478 TTGCCAAGCC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.20, T:0.45
Consensus pattern (25 bp):
TTGGTATAAGTTAAAAATATTGGTA
Found at i:22971377 original size:20 final size:20
Alignment explanation
Indices: 22971354--22971391 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
22971344 ATAAGTTTTA
22971354 TTTATCATTACAA-TATAATT
1 TTTAT-ATTACAATTATAATT
*
22971374 TTTATATTTCAATTATAA
1 TTTATATTACAATTATAA
22971392 ATTATTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 6 0.38
20 10 0.62
ACGTcount: A:0.39, C:0.08, G:0.00, T:0.53
Consensus pattern (20 bp):
TTTATATTACAATTATAATT
Found at i:22971872 original size:30 final size:30
Alignment explanation
Indices: 22971817--22971874 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
22971807 GTAGATTTTG
* *
22971817 AGTGTCTCTATAAAGATTATCTTTATCAAA
1 AGTGTCCCTATAAAGATTATATTTATCAAA
22971847 AGTGTCCCTATAAAGATT-TAATTTATCA
1 AGTGTCCCTATAAAGATTAT-ATTTATCA
22971875 TGAAAATATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 1 0.04
30 24 0.96
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.40
Consensus pattern (30 bp):
AGTGTCCCTATAAAGATTATATTTATCAAA
Found at i:22977728 original size:19 final size:19
Alignment explanation
Indices: 22977704--22977743 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
22977694 TGAAAATGTG
22977704 TAAGTTATGCCTATAAATT
1 TAAGTTATGCCTATAAATT
*
22977723 TAAGTTATGCCTATGAATT
1 TAAGTTATGCCTATAAATT
22977742 TA
1 TA
22977744 TGAGAACATG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.35, C:0.10, G:0.12, T:0.42
Consensus pattern (19 bp):
TAAGTTATGCCTATAAATT
Found at i:22979826 original size:25 final size:25
Alignment explanation
Indices: 22979797--22979862 Score: 96
Period size: 25 Copynumber: 2.6 Consensus size: 25
22979787 ATTATCATGG
*
22979797 TTTTATCCACAGTTTTATGGTTTTA
1 TTTTATCCACAATTTTATGGTTTTA
*
22979822 TTTTATCTACAATTTTATGGTTTTA
1 TTTTATCCACAATTTTATGGTTTTA
* *
22979847 TTTTGTCCACATTTTT
1 TTTTATCCACAATTTT
22979863 CGTGATTTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.20, C:0.12, G:0.09, T:0.59
Consensus pattern (25 bp):
TTTTATCCACAATTTTATGGTTTTA
Found at i:22981026 original size:15 final size:15
Alignment explanation
Indices: 22980976--22981027 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
22980966 ACGGATTCAC
*
22980976 ATAATTTTGAATTTT
1 ATAATTTTGAATATT
* *
22980991 ATAAGTTATAAATATT
1 ATAA-TTTTGAATATT
* *
22981007 TTAATTTTGAATATA
1 ATAATTTTGAATATT
22981022 ATAATT
1 ATAATT
22981028 CATTTTATTT
Statistics
Matches: 28, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
15 17 0.61
16 11 0.39
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (15 bp):
ATAATTTTGAATATT
Found at i:22982398 original size:39 final size:40
Alignment explanation
Indices: 22982355--22982440 Score: 111
Period size: 39 Copynumber: 2.1 Consensus size: 40
22982345 AAAAAACTAT
* * *
22982355 ATATAATAAAATATTAATTATATTAAT-TTGTGTTTTTTA
1 ATATAATAAAACATTAATTATATTAATATAGTGTTCTTTA
* *
22982394 ATATAATAAAACATTTATTATATTTATGATAGTGTTCTTTA
1 ATATAATAAAACATTAATTATATTAAT-ATAGTGTTCTTTA
22982435 ATATAA
1 ATATAA
22982441 ATACTTTTTA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
39 24 0.60
41 16 0.40
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (40 bp):
ATATAATAAAACATTAATTATATTAATATAGTGTTCTTTA
Found at i:22984404 original size:63 final size:63
Alignment explanation
Indices: 22984334--22984458 Score: 241
Period size: 63 Copynumber: 2.0 Consensus size: 63
22984324 ACCAAATACC
22984334 ATAAAATCATATCTCATAAAATCAGGATTTAAATAGGATATTACGTTTCTGATTTTAGGGGAT
1 ATAAAATCATATCTCATAAAATCAGGATTTAAATAGGATATTACGTTTCTGATTTTAGGGGAT
*
22984397 ATAAAATCATATCTCATAAAATCAGGATTTAAATAGGATATTATGTTTCTGATTTTAGGGGA
1 ATAAAATCATATCTCATAAAATCAGGATTTAAATAGGATATTACGTTTCTGATTTTAGGGGA
22984459 GATGATAAAG
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 61 1.00
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.37
Consensus pattern (63 bp):
ATAAAATCATATCTCATAAAATCAGGATTTAAATAGGATATTACGTTTCTGATTTTAGGGGAT
Found at i:22984978 original size:92 final size:92
Alignment explanation
Indices: 22984815--22984997 Score: 312
Period size: 92 Copynumber: 2.0 Consensus size: 92
22984805 ATAGGGTTCT
* *
22984815 GTATATACATTCTCTCAACCTTTTTCTCTCTATTTCTTCACAAATGTATAATGCAATAATGTATA
1 GTATATACATTCTCTCAACCTTTTTCTCTCTATTTCTTCACAAATGTATAATGCAATAAGGCATA
22984880 ACTACTACTTCTAGAGAGATGATAACA
66 ACTACTACTTCTAGAGAGATGATAACA
22984907 GTATATACATTCTCTCAACCTTTTTCTCTCTATTTCTTCACAAATGTATAATGCAATAAGGCATA
1 GTATATACATTCTCTCAACCTTTTTCTCTCTATTTCTTCACAAATGTATAATGCAATAAGGCATA
* * * *
22984972 ATTACTAGTTGTTGAGAGATGATAAC
66 ACTACTACTTCTAGAGAGATGATAAC
22984998 TGTGGTCATC
Statistics
Matches: 85, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
92 85 1.00
ACGTcount: A:0.33, C:0.19, G:0.10, T:0.38
Consensus pattern (92 bp):
GTATATACATTCTCTCAACCTTTTTCTCTCTATTTCTTCACAAATGTATAATGCAATAAGGCATA
ACTACTACTTCTAGAGAGATGATAACA
Found at i:22987521 original size:16 final size:16
Alignment explanation
Indices: 22987483--22987521 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
22987473 ATTACATGTG
22987483 AAAAATA-ATAAAATA
1 AAAAATATATAAAATA
**
22987498 AATTATATATAAAATA
1 AAAAATATATAAAATA
22987514 AAAAATAT
1 AAAAATAT
22987522 TCTACATTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 1
0.79 0.17 0.04
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (16 bp):
AAAAATATATAAAATA
Found at i:22988369 original size:16 final size:16
Alignment explanation
Indices: 22988336--22988369 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
22988326 AGAAGGTGTT
* *
22988336 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
22988352 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
22988368 AA
1 AA
22988370 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:22991192 original size:21 final size:21
Alignment explanation
Indices: 22991166--22991206 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
22991156 AGACGAGCAA
* *
22991166 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
22991187 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
22991207 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:22993145 original size:16 final size:16
Alignment explanation
Indices: 22993112--22993145 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
22993102 GGAGATTGTT
* *
22993112 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
22993128 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
22993144 AA
1 AA
22993146 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:22999264 original size:2 final size:2
Alignment explanation
Indices: 22999257--22999289 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
22999247 ATTTTTATAA
22999257 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
22999290 ACACACACAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:23000841 original size:17 final size:16
Alignment explanation
Indices: 23000819--23000865 Score: 67
Period size: 17 Copynumber: 2.8 Consensus size: 16
23000809 TTTTATGTGT
23000819 TTTTTAATTTATTATAA
1 TTTTTAATTT-TTATAA
23000836 TTTTTAAATTTTTATAA
1 TTTTT-AATTTTTATAA
23000853 TTTTATAATTTTT
1 TTTT-TAATTTTT
23000866 TTAAAATTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
17 22 0.79
18 6 0.21
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TTTTTAATTTTTATAA
Found at i:23007191 original size:16 final size:18
Alignment explanation
Indices: 23007172--23007204 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
23007162 TTATAAAGGT
23007172 TAATTAA-G-TAAAATAG
1 TAATTAATGATAAAATAG
23007188 TAATTAATGATAAAATA
1 TAATTAATGATAAAATA
23007205 AATAAAACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 1 0.07
18 7 0.47
ACGTcount: A:0.58, C:0.00, G:0.09, T:0.33
Consensus pattern (18 bp):
TAATTAATGATAAAATAG
Found at i:23019683 original size:70 final size:64
Alignment explanation
Indices: 23019565--23019714 Score: 192
Period size: 70 Copynumber: 2.2 Consensus size: 64
23019555 ATATATGATT
* * * *
23019565 GTTGAAATGTAAGATTATTTAGCATATTACTAGGTATATTATACTACCTTCTTTTTTTTTTTTTC
1 GTTGGAATGTAAGATTACTTAGCACATTACTAAGTATATTATACTA-C--C---TTTTTTTTTTC
23019630 ATTTG
60 ATTTG
*
23019635 GTTGGAATGTAAGATTACTTAGCACATTACTAAGTATATTATATTACCTTTTTTTTTTCATTTG
1 GTTGGAATGTAAGATTACTTAGCACATTACTAAGTATATTATACTACCTTTTTTTTTTCATTTG
*
23019699 GTTAGAATGTAAGATT
1 GTTGGAATGTAAGATT
23019715 TTGCTATTTG
Statistics
Matches: 74, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
64 31 0.42
67 1 0.01
69 1 0.01
70 41 0.55
ACGTcount: A:0.28, C:0.09, G:0.13, T:0.49
Consensus pattern (64 bp):
GTTGGAATGTAAGATTACTTAGCACATTACTAAGTATATTATACTACCTTTTTTTTTTCATTTG
Found at i:23022751 original size:46 final size:46
Alignment explanation
Indices: 23022701--23022873 Score: 159
Period size: 46 Copynumber: 3.7 Consensus size: 46
23022691 TTGGGCATCC
* * *
23022701 GAACTCGTTGAGTTGAGTCCGATTTCACTTATGGATGCAAATGTTT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCT
* * *** * * ** *
23022747 GAACTCGTTGATTTGAGTCTGAGTTCGAGAGATGTA-ACTAGGCATCT
1 GAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACGTCT
* * * *
23022794 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCT
*
23022840 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
23022874 GCGGGTTACA
Statistics
Matches: 97, Mismatches: 27, Indels: 6
0.75 0.21 0.05
Matches are distributed among these distances:
46 65 0.67
47 32 0.33
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.32
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCT
Found at i:23022856 original size:93 final size:93
Alignment explanation
Indices: 23022694--23022865 Score: 245
Period size: 93 Copynumber: 1.8 Consensus size: 93
23022684 AGGATGTTTG
* * *** *
23022694 GGCATCCGAACTCGTTGAGTTGAGTCCGATTTCACTTATGGATGCAAATGTTTGAACTCGTTGAT
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
*
23022759 TTGAGTCTGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * *
23022787 GGCATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
23022852 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
23022866 ACTTATGGGC
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:23025203 original size:20 final size:18
Alignment explanation
Indices: 23025164--23025203 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 18
23025154 AAATTTCTGG
*
23025164 AAAATATTTTTCCCTTTA
1 AAAATATTTTTCCCTCTA
23025182 AAAATATATTTTCCCATCTA
1 AAAATAT-TTTTCCC-TCTA
23025202 AA
1 AA
23025204 CTCAAAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 7 0.37
19 7 0.37
20 5 0.26
ACGTcount: A:0.40, C:0.17, G:0.00, T:0.42
Consensus pattern (18 bp):
AAAATATTTTTCCCTCTA
Found at i:23029007 original size:22 final size:22
Alignment explanation
Indices: 23028936--23029007 Score: 74
Period size: 22 Copynumber: 3.3 Consensus size: 22
23028926 AGAAACAAAA
*
23028936 ATAGAAACAGAGCATAAT-AGAT
1 ATAGATACAGAGCAT-ATCAGAT
* *
23028958 ATAGATGCAGAGCATATCAAAT
1 ATAGATACAGAGCATATCAGAT
** *
23028980 GCAGATACAGAGCATATCGGAT
1 ATAGATACAGAGCATATCAGAT
23029002 ATAGAT
1 ATAGAT
23029008 TCAAAGTTCT
Statistics
Matches: 39, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
21 2 0.05
22 37 0.95
ACGTcount: A:0.46, C:0.12, G:0.21, T:0.21
Consensus pattern (22 bp):
ATAGATACAGAGCATATCAGAT
Found at i:23030567 original size:69 final size:69
Alignment explanation
Indices: 23030471--23030663 Score: 264
Period size: 69 Copynumber: 2.8 Consensus size: 69
23030461 AGTTTTCCTC
* * * * *
23030471 ATGGAAAATGCCATACATACATTTCATAACTCAGTATGGAAAATACCATACCTACAG-ATCATAG
1 ATGG-AAATACCATACCTACATATCATAGCTCGGTATGG-AAATACCATACCTACAGTATCATAG
*
23030535 CTCGGT
64 CTCAGT
*
23030541 ATGGAAATACCATACCTACGTATCATAGCTCGGTATGGAAATACCATACCTAC-GTATCATAGCT
1 ATGGAAATACCATACCTACATATCATAGCTCGGTATGGAAATACCATACCTACAGTATCATAGCT
*
23030605 TAGT
66 CAGT
*
23030609 ATGGATAATACCATACCTACATATCATAGCTTGGTATGGAAATACCATACCTACA
1 ATGGA-AATACCATACCTACATATCATAGCTCGGTATGGAAATACCATACCTACA
23030664 TTTCACATTT
Statistics
Matches: 110, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
67 1 0.01
68 31 0.28
69 74 0.67
70 4 0.04
ACGTcount: A:0.37, C:0.22, G:0.15, T:0.27
Consensus pattern (69 bp):
ATGGAAATACCATACCTACATATCATAGCTCGGTATGGAAATACCATACCTACAGTATCATAGCT
CAGT
Found at i:23030660 original size:103 final size:104
Alignment explanation
Indices: 23030471--23030662 Score: 296
Period size: 103 Copynumber: 1.9 Consensus size: 104
23030461 AGTTTTCCTC
* *
23030471 ATGGAAAATGCCATACATACATTTCATAACTCAGTATGGAAAATACCATACCTACAGATCATAGC
1 ATGGAAAATACCATACATACATATCATAACTCAGTATGGAAAATACCATACCTACAGATCATAGC
23030536 TCGGTATGGAAATACCATACCTACGTATCATAGCTCGGT
66 TCGGTATGGAAATACCATACCTACGTATCATAGCTCGGT
* * * * * *
23030575 ATGG-AAATACCATACCTACGTATCATAGCTTAGTATGGATAATACCATACCTACATATCATAGC
1 ATGGAAAATACCATACATACATATCATAACTCAGTATGGAAAATACCATACCTACAGATCATAGC
*
23030639 TTGGTATGGAAATACCATACCTAC
66 TCGGTATGGAAATACCATACCTAC
23030663 ATTTCACATT
Statistics
Matches: 79, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
103 75 0.95
104 4 0.05
ACGTcount: A:0.36, C:0.22, G:0.15, T:0.27
Consensus pattern (104 bp):
ATGGAAAATACCATACATACATATCATAACTCAGTATGGAAAATACCATACCTACAGATCATAGC
TCGGTATGGAAATACCATACCTACGTATCATAGCTCGGT
Found at i:23030664 original size:34 final size:34
Alignment explanation
Indices: 23030471--23030664 Score: 262
Period size: 34 Copynumber: 5.6 Consensus size: 34
23030461 AGTTTTCCTC
* * * * *
23030471 ATGGAAAATGCCATACATACATTTCATAACTCAGT
1 ATGG-AAATACCATACCTACATATCATAGCTCGGT
*
23030506 ATGGAAAATACCATACCTACAGATCATAGCTCGGT
1 ATGG-AAATACCATACCTACATATCATAGCTCGGT
*
23030541 ATGGAAATACCATACCTACGTATCATAGCTCGGT
1 ATGGAAATACCATACCTACATATCATAGCTCGGT
* **
23030575 ATGGAAATACCATACCTACGTATCATAGCTTAGT
1 ATGGAAATACCATACCTACATATCATAGCTCGGT
*
23030609 ATGGATAATACCATACCTACATATCATAGCTTGGT
1 ATGGA-AATACCATACCTACATATCATAGCTCGGT
23030644 ATGGAAATACCATACCTACAT
1 ATGGAAATACCATACCTACAT
23030665 TTCACATTTT
Statistics
Matches: 146, Mismatches: 12, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
34 81 0.55
35 65 0.45
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.27
Consensus pattern (34 bp):
ATGGAAATACCATACCTACATATCATAGCTCGGT
Found at i:23030682 original size:34 final size:34
Alignment explanation
Indices: 23030506--23030683 Score: 151
Period size: 34 Copynumber: 5.2 Consensus size: 34
23030496 ATAACTCAGT
* * * **
23030506 ATGGAAAATACCATACCTACAGATCATAGCTCGGT
1 ATGG-AAATACCATACCTACATATCACAGCTTGCC
* * * **
23030541 ATGGAAATACCATACCTACGTATCATAGCTCGGT
1 ATGGAAATACCATACCTACATATCACAGCTTGCC
* * *
23030575 ATGGAAATACCATACCTACGTATCATAGCTTAG-T
1 ATGGAAATACCATACCTACATATCACAGCTT-GCC
* **
23030609 ATGGATAATACCATACCTACATATCATAGCTTGGT
1 ATGGA-AATACCATACCTACATATCACAGCTTGCC
* **
23030644 ATGGAAATACCATACCTACATTTCACATTTTGCC
1 ATGGAAATACCATACCTACATATCACAGCTTGCC
23030678 ATGGAA
1 ATGGAA
23030684 CAACCATGGT
Statistics
Matches: 130, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
34 94 0.72
35 36 0.28
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.28
Consensus pattern (34 bp):
ATGGAAATACCATACCTACATATCACAGCTTGCC
Found at i:23034313 original size:15 final size:16
Alignment explanation
Indices: 23034281--23034315 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
23034271 TATTACATTA
23034281 AAAATATTTAAATTTT
1 AAAATATTTAAATTTT
*
23034297 AAAATATTT-ATTTTT
1 AAAATATTTAAATTTT
23034312 AAAA
1 AAAA
23034316 AGTTTTAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
AAAATATTTAAATTTT
Found at i:23034316 original size:16 final size:17
Alignment explanation
Indices: 23034278--23034316 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
23034268 CTTTATTACA
23034278 TTAAAAATATTTAAATT
1 TTAAAAATATTTAAATT
*
23034295 TT-AAAATATTT-ATTT
1 TTAAAAATATTTAAATT
23034310 TTAAAAA
1 TTAAAAA
23034317 GTTTTAATGT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 5 0.25
16 13 0.65
17 2 0.10
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
TTAAAAATATTTAAATT
Found at i:23043950 original size:31 final size:31
Alignment explanation
Indices: 23043915--23043978 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
23043905 TAGGAGAGAG
23043915 AGAGAAGAGACTTTCATGGCCAAATTGGGTA
1 AGAGAAGAGACTTTCATGGCCAAATTGGGTA
23043946 AGAGAAGAGACTTTCATGGCCAAATTGGGTA
1 AGAGAAGAGACTTTCATGGCCAAATTGGGTA
23043977 AG
1 AG
23043979 TTTCCTTGTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.36, C:0.12, G:0.30, T:0.22
Consensus pattern (31 bp):
AGAGAAGAGACTTTCATGGCCAAATTGGGTA
Found at i:23045490 original size:26 final size:25
Alignment explanation
Indices: 23045461--23045512 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
23045451 ACTTTTGCTA
23045461 AGGGACT-TTTGATGAAAATGTGAAAT
1 AGGGACTATTTG-TG-AAATGTGAAAT
23045487 AGGGACTAATTTGTGAAATGTGAAAT
1 AGGGACT-ATTTGTGAAATGTGAAAT
23045513 TTATGAGTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 18 0.75
27 2 0.08
28 4 0.17
ACGTcount: A:0.38, C:0.04, G:0.27, T:0.31
Consensus pattern (25 bp):
AGGGACTATTTGTGAAATGTGAAAT
Found at i:23046063 original size:42 final size:43
Alignment explanation
Indices: 23046015--23046128 Score: 119
Period size: 42 Copynumber: 2.7 Consensus size: 43
23046005 ACCGAGATTC
* *
23046015 CGTATAAGACCATATCTGGGATATGACATTGGTATTTGAT-TTT
1 CGTATAAGACCATATCTGGGATATGACATTCG-ATATGATATTT
* *
23046058 -GTATAAGACCATGT-TAGGGACATGACA-TCGATATGATATTT
1 CGTATAAGACCATATCT-GGGATATGACATTCGATATGATATTT
* * *
23046099 CATGTAAGACCATATCTGGGATATGGCATT
1 CGTATAAGACCATATCTGGGATATGACATT
23046129 AATACGGTAC
Statistics
Matches: 57, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
40 6 0.11
41 6 0.11
42 43 0.75
43 2 0.04
ACGTcount: A:0.31, C:0.13, G:0.22, T:0.34
Consensus pattern (43 bp):
CGTATAAGACCATATCTGGGATATGACATTCGATATGATATTT
Found at i:23051885 original size:12 final size:13
Alignment explanation
Indices: 23051868--23051896 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
23051858 AGAATTGAGC
23051868 ACACGGG-CTAGA
1 ACACGGGCCTAGA
23051880 ACACGGGCCTAGA
1 ACACGGGCCTAGA
23051893 ACAC
1 ACAC
23051897 AGGCATGTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.44
13 9 0.56
ACGTcount: A:0.34, C:0.31, G:0.28, T:0.07
Consensus pattern (13 bp):
ACACGGGCCTAGA
Found at i:23054882 original size:5 final size:5
Alignment explanation
Indices: 23054867--23054906 Score: 55
Period size: 5 Copynumber: 7.8 Consensus size: 5
23054857 ATTTTATATT
23054867 TATAA TAATAA TATAA TATAA TAT-A TAATAA TATAA TATA
1 TATAA T-ATAA TATAA TATAA TATAA T-ATAA TATAA TATA
23054907 TTTACTTATA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
4 2 0.06
5 23 0.72
6 7 0.22
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TATAA
Found at i:23054916 original size:23 final size:22
Alignment explanation
Indices: 23054861--23054927 Score: 77
Period size: 20 Copynumber: 3.1 Consensus size: 22
23054851 TTATTTATTT
*
23054861 TATATTTATAATAATAATATAA
1 TATATTTATTATAATAATATAA
*
23054883 TATA-ATA-TATAATAATATAA
1 TATATTTATTATAATAATATAA
23054903 TATATTTACTTATAAGTAA-ATAA
1 TATATTTA-TTATAA-TAATATAA
23054926 TA
1 TA
23054928 ATTACTAATA
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
20 16 0.42
21 4 0.11
22 4 0.11
23 11 0.29
24 3 0.08
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (22 bp):
TATATTTATTATAATAATATAA
Found at i:23057063 original size:26 final size:26
Alignment explanation
Indices: 23057034--23057141 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
23057024 TGGTACAAAT
23057034 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
23057060 TGATAATGGATTAGGTAAATATTACA
1 TGATAATGGGTTAGGTAAATGTTCCA
23057086 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
23057112 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
23057138 TGAT
1 TGAT
23057142 GGCCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:23058844 original size:54 final size:53
Alignment explanation
Indices: 23058762--23058902 Score: 228
Period size: 54 Copynumber: 2.6 Consensus size: 53
23058752 AGGAAGCGTC
23058762 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCAGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCAGTT
*
23058816 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCAGTT
* *
23058870 CTGGTGGCTCTGCCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTG
23058903 ACTTCGTCAC
Statistics
Matches: 82, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
53 7 0.09
54 75 0.91
ACGTcount: A:0.18, C:0.24, G:0.24, T:0.34
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCAGTT
Found at i:23058913 original size:27 final size:27
Alignment explanation
Indices: 23058762--23058920 Score: 184
Period size: 27 Copynumber: 5.9 Consensus size: 27
23058752 AGGAAGCGTC
*
23058762 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
*
23058789 CTGGTGGCTCTGCCACATATATCAGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
* *
23058816 CTGGTGGCTATGCCACGATTATCTG-AT
1 CTGGTGGCTCTGCCAC-AATATCTGTAT
23058843 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
23058870 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
23058897 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
23058921 GCAGCCTCGC
Statistics
Matches: 115, Mismatches: 9, Indels: 16
0.82 0.06 0.11
Matches are distributed among these distances:
26 10 0.09
27 103 0.90
28 2 0.02
ACGTcount: A:0.19, C:0.25, G:0.23, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:23061325 original size:17 final size:17
Alignment explanation
Indices: 23061303--23061337 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
23061293 TTGCACAACC
23061303 TTGATGAAGAAGTTTAT
1 TTGATGAAGAAGTTTAT
23061320 TTGATGAAGAAGTTTAT
1 TTGATGAAGAAGTTTAT
23061337 T
1 T
23061338 AGTTTGAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.00, G:0.23, T:0.43
Consensus pattern (17 bp):
TTGATGAAGAAGTTTAT
Found at i:23069333 original size:129 final size:129
Alignment explanation
Indices: 23069103--23069618 Score: 1032
Period size: 129 Copynumber: 4.0 Consensus size: 129
23069093 AAAAAAATCT
23069103 TGGATCAAAATAGCTTGCTTGCAAATTCATCAGTGGGAGCTCCTATACGAGAATAGCTGGACTTT
1 TGGATCAAAATAGCTTGCTTGCAAATTCATCAGTGGGAGCTCCTATACGAGAATAGCTGGACTTT
23069168 TTTGAAACATCTCTCAGTTCTGATCATTCTCCATTTTCTCTTTTCTAAACATCACTTTCTTCCC
66 TTTGAAACATCTCTCAGTTCTGATCATTCTCCATTTTCTCTTTTCTAAACATCACTTTCTTCCC
23069232 TGGATCAAAATAGCTTGCTTGCAAATTCATCAGTGGGAGCTCCTATACGAGAATAGCTGGACTTT
1 TGGATCAAAATAGCTTGCTTGCAAATTCATCAGTGGGAGCTCCTATACGAGAATAGCTGGACTTT
23069297 TTTGAAACATCTCTCAGTTCTGATCATTCTCCATTTTCTCTTTTCTAAACATCACTTTCTTCCC
66 TTTGAAACATCTCTCAGTTCTGATCATTCTCCATTTTCTCTTTTCTAAACATCACTTTCTTCCC
23069361 TGGATCAAAATAGCTTGCTTGCAAATTCATCAGTGGGAGCTCCTATACGAGAATAGCTGGACTTT
1 TGGATCAAAATAGCTTGCTTGCAAATTCATCAGTGGGAGCTCCTATACGAGAATAGCTGGACTTT
23069426 TTTGAAACATCTCTCAGTTCTGATCATTCTCCATTTTCTCTTTTCTAAACATCACTTTCTTCCC
66 TTTGAAACATCTCTCAGTTCTGATCATTCTCCATTTTCTCTTTTCTAAACATCACTTTCTTCCC
23069490 TGGATCAAAATAGCTTGCTTGCAAATTCATCAGTGGGAGCTCCTATACGAGAATAGCTGGACTTT
1 TGGATCAAAATAGCTTGCTTGCAAATTCATCAGTGGGAGCTCCTATACGAGAATAGCTGGACTTT
23069555 TTTGAAACATCTCTCAGTTCTGATCATTCTCCATTTTCTCTTTTCTAAACATCACTTTCTTCCC
66 TTTGAAACATCTCTCAGTTCTGATCATTCTCCATTTTCTCTTTTCTAAACATCACTTTCTTCCC
23069619 ATCTCCATTC
Statistics
Matches: 387, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
129 387 1.00
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (129 bp):
TGGATCAAAATAGCTTGCTTGCAAATTCATCAGTGGGAGCTCCTATACGAGAATAGCTGGACTTT
TTTGAAACATCTCTCAGTTCTGATCATTCTCCATTTTCTCTTTTCTAAACATCACTTTCTTCCC
Found at i:23069944 original size:19 final size:20
Alignment explanation
Indices: 23069899--23069946 Score: 57
Period size: 18 Copynumber: 2.5 Consensus size: 20
23069889 TAGATCATAT
23069899 ATATTTTTATCATTTTTAATA
1 ATATTTTTAT-ATTTTTAATA
23069920 AT-TTTTTAT-TTTTTAA-A
1 ATATTTTTATATTTTTAATA
23069937 ATTATTTTTA
1 A-TATTTTTA
23069947 GTAATTTATA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
17 2 0.08
18 8 0.32
19 6 0.24
20 7 0.28
21 2 0.08
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (20 bp):
ATATTTTTATATTTTTAATA
Found at i:23070784 original size:39 final size:39
Alignment explanation
Indices: 23070729--23070807 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
23070719 AAGGTGGAAG
*
23070729 TCAACTTTCTCTCTACACTCAGGAAAATCAAAATTCAAC
1 TCAACTTTCTCCCTACACTCAGGAAAATCAAAATTCAAC
*
23070768 TCAACTTTCTCCCTACACTCTGGAAAATCAAAATTCAAC
1 TCAACTTTCTCCCTACACTCAGGAAAATCAAAATTCAAC
23070807 T
1 T
23070808 TTTAATTTTG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.37, C:0.29, G:0.05, T:0.29
Consensus pattern (39 bp):
TCAACTTTCTCCCTACACTCAGGAAAATCAAAATTCAAC
Found at i:23071734 original size:14 final size:15
Alignment explanation
Indices: 23071715--23071745 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
23071705 ATTACTTTTC
23071715 AAAAGTG-TTTTGAA
1 AAAAGTGATTTTGAA
23071729 AAAAGTGATTTTGAA
1 AAAAGTGATTTTGAA
23071744 AA
1 AA
23071746 GTACTTTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.44
15 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.19, T:0.32
Consensus pattern (15 bp):
AAAAGTGATTTTGAA
Found at i:23073827 original size:40 final size:40
Alignment explanation
Indices: 23073763--23073841 Score: 122
Period size: 40 Copynumber: 2.0 Consensus size: 40
23073753 ATATGATACC
* * *
23073763 ACTTGGTGTGTAGGGTTGGATGGGTTGATTTTATCCCCAT
1 ACTTGGTGTGTAAGGCTGGATGGGTCGATTTTATCCCCAT
*
23073803 ACTTGGTGTGTAAGGCTGGGTGGGTCGATTTTATCCCCA
1 ACTTGGTGTGTAAGGCTGGATGGGTCGATTTTATCCCCA
23073842 CATGGTGTGT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.15, C:0.15, G:0.33, T:0.37
Consensus pattern (40 bp):
ACTTGGTGTGTAAGGCTGGATGGGTCGATTTTATCCCCAT
Found at i:23075078 original size:24 final size:24
Alignment explanation
Indices: 23075023--23075072 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
23075013 ATCTGGACAA
23075023 TAGCGAGACACCGGTGTCACCTAT
1 TAGCGAGACACCGGTGTCACCTAT
23075047 TAGCGAGACACCGGTGTCACCTAT
1 TAGCGAGACACCGGTGTCACCTAT
23075071 TA
1 TA
23075073 CTGAGATTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.22
Consensus pattern (24 bp):
TAGCGAGACACCGGTGTCACCTAT
Found at i:23081120 original size:40 final size:40
Alignment explanation
Indices: 23081060--23081135 Score: 134
Period size: 40 Copynumber: 1.9 Consensus size: 40
23081050 ATATGGTACC
* *
23081060 ACTTGGTGTGTAGGGTTGGGTGGGTTGATTTTATCCACAT
1 ACTTGGTGTGTAGGGCTGGGTGGGTCGATTTTATCCACAT
23081100 ACTTGGTGTGTAGGGCTGGGTGGGTCGATTTTATCC
1 ACTTGGTGTGTAGGGCTGGGTGGGTCGATTTTATCC
23081136 CCACATGGTG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.13, C:0.12, G:0.37, T:0.38
Consensus pattern (40 bp):
ACTTGGTGTGTAGGGCTGGGTGGGTCGATTTTATCCACAT
Found at i:23089274 original size:27 final size:28
Alignment explanation
Indices: 23089237--23089376 Score: 184
Period size: 27 Copynumber: 5.2 Consensus size: 28
23089227 AGCATGGCTG
* *
23089237 CCAGA-ACAGATA-ATGTGACAGAGTCA
1 CCAGATACAGATATATGTGGCAGAGCCA
23089263 CCAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGATACAGATATAT-GTGGCAGAGCCA
23089291 CCAGA-ACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
*
23089318 CCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* *
23089345 CCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
23089372 CCAGA
1 CCAGA
23089377 ACGCTTCCTC
Statistics
Matches: 106, Mismatches: 4, Indels: 7
0.91 0.03 0.06
Matches are distributed among these distances:
26 5 0.05
27 84 0.79
28 17 0.16
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (28 bp):
CCAGATACAGATATATGTGGCAGAGCCA
Found at i:23091034 original size:26 final size:26
Alignment explanation
Indices: 23090996--23091053 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
23090986 CATGAAATTC
23090996 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
** *
23091022 TTATCATTTAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
23091048 TTATCA
1 TTATCA
23091054 ATTTGTACCA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.36, C:0.24, G:0.02, T:0.38
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:23094999 original size:27 final size:28
Alignment explanation
Indices: 23094962--23095101 Score: 184
Period size: 27 Copynumber: 5.2 Consensus size: 28
23094952 AGCATGGCTG
* *
23094962 CCAGA-ACAGATA-ATGTGACAGAGTCA
1 CCAGATACAGATATATGTGGCAGAGCCA
23094988 CCAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGATACAGATATAT-GTGGCAGAGCCA
23095016 CCAGA-ACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
*
23095043 CCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* *
23095070 CCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
23095097 CCAGA
1 CCAGA
23095102 ACGCTTCCTC
Statistics
Matches: 106, Mismatches: 4, Indels: 7
0.91 0.03 0.06
Matches are distributed among these distances:
26 5 0.05
27 84 0.79
28 17 0.16
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (28 bp):
CCAGATACAGATATATGTGGCAGAGCCA
Found at i:23096745 original size:26 final size:26
Alignment explanation
Indices: 23096707--23096764 Score: 91
Period size: 26 Copynumber: 2.2 Consensus size: 26
23096697 CATGAAATTC
23096707 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
23096733 TTATCATTG-AACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCCA
23096759 TTATCA
1 TTATCA
23096765 ATTTGTACCA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
26 28 0.93
27 2 0.07
ACGTcount: A:0.36, C:0.24, G:0.03, T:0.36
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:23098191 original size:46 final size:46
Alignment explanation
Indices: 23098098--23098306 Score: 176
Period size: 46 Copynumber: 4.5 Consensus size: 46
23098088 GTGCAGTTGC
* * * *
23098098 CATGTCCAAGACATGGTCTTACACT-G-ACACATCTCGTA-GCCGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTCG-AGGCCAATG
* *
23098143 CATGTCCTAGACATGTCTTACATTGGCT-TACATCTCGAGGCCAATG
1 CATGTCCCAGACATGTCTTACACTGGCTCT-CATCTCGAGGCCAATG
* * * * * * *
23098189 CATGTCGCAGAAATGTCTTACACTAGCTCTCGTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAGGCCAATG
* * *
23098235 CCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCTAATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-CTCGAGGCCAATG
*
23098283 CATATCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
23098307 AGCACACAAA
Statistics
Matches: 131, Mismatches: 25, Indels: 15
0.77 0.15 0.09
Matches are distributed among these distances:
44 9 0.07
45 15 0.11
46 58 0.44
47 26 0.20
48 22 0.17
49 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAGGCCAATG
Found at i:23098256 original size:94 final size:92
Alignment explanation
Indices: 23098136--23098309 Score: 226
Period size: 94 Copynumber: 1.9 Consensus size: 92
23098126 ACATCTCGTA
* * * * *
23098136 GCCGATGCATGTCCTAGACATGTCTTACATTGGCT-TACAT-CTCGAGGCCAATGCATGTCGCAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATAAT-GAGGCCAATGCATATCCCAG
23098199 AAATGTCTTACACTAGCTCTCGTCTCAAT
64 AAATGTCTTACACTAGCTCTCGTCTCAAT
* *
23098228 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCTAATGCATATCCCAG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATAATGAGGCCAATGCATATCCCAG
*
23098293 ACATGTCTTACACTAGC
64 AAATGTCTTACACTAGC
23098310 ACACAAATAA
Statistics
Matches: 70, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
92 7 0.10
93 13 0.19
94 48 0.69
95 2 0.03
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (92 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAATGAGGCCAATGCATATCCCAGAA
ATGTCTTACACTAGCTCTCGTCTCAAT
Found at i:23112933 original size:49 final size:49
Alignment explanation
Indices: 23112857--23112955 Score: 171
Period size: 49 Copynumber: 2.0 Consensus size: 49
23112847 GCAGGAGGTA
*
23112857 GCGGATTTTCTTGGTTTTTAGCGATCTCCTCCGTTGTGGTTGAAGTATC
1 GCGGATTTTCTTGGTTTTTAGCCATCTCCTCCGTTGTGGTTGAAGTATC
* *
23112906 GCGGATTTTCTTTGTTTTTAGCCATCTCCTCGGTTGTGGTTGAAGTATC
1 GCGGATTTTCTTGGTTTTTAGCCATCTCCTCCGTTGTGGTTGAAGTATC
23112955 G
1 G
23112956 TCCTCTAGCT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.12, C:0.18, G:0.26, T:0.43
Consensus pattern (49 bp):
GCGGATTTTCTTGGTTTTTAGCCATCTCCTCCGTTGTGGTTGAAGTATC
Found at i:23115334 original size:94 final size:91
Alignment explanation
Indices: 23115076--23115383 Score: 254
Period size: 94 Copynumber: 3.3 Consensus size: 91
23115066 ATGCCGATGC
* * *
23115076 CATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCGTACTGATGTCATGTCCCAGACATG
1 CATGTCCCAGACATGGTCTTACACTA--TCTCACATCT-CATACCGATG-CATGTCCCAGACATG
* * * *
23115141 GTCTTACACTAGC--ACATCTATACGTGTCGATGC
62 GTCTTACA-TTGCTTACATCT-GA-G-GCCGAT-A
* ** *
23115174 CATGTCCTAGACATGGTCTTACA--ATGACACATCTCATAGCCGATGCATGTCCTAGACAT-GTC
1 CATGTCCCAGACATGGTCTTACACTATCTCACATCTCATA-CCGATGCATGTCCCAGACATGGTC
23115236 TTACATTGCCTTACATCTCGAGGCCGATA
65 TTACATTG-CTTACATCT-GAGGCCGATA
*
23115265 CATGTCCCAGACAT-GTCTTACACTATCTCTCATCTCAATACCGATGCCATGTCCCAGACATGGT
1 CATGTCCCAGACATGGTCTTACACTATCTCACATCTC-ATACCGATG-CATGTCCCAGACATGGT
* * * *
23115329 CTTACACTGGCTCT-CATAATGTGGCCGATG
64 CTTACA-TTGCT-TACAT-CTGAGGCCGATA
*
23115359 CATGTCCCAGAAAT-GTCTTACACTA
1 CATGTCCCAGACATGGTCTTACACTA
23115384 GCACACAAAT
Statistics
Matches: 176, Mismatches: 22, Indels: 28
0.78 0.10 0.12
Matches are distributed among these distances:
90 8 0.05
91 15 0.09
92 29 0.16
93 33 0.19
94 64 0.36
95 4 0.02
96 1 0.01
98 22 0.12
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (91 bp):
CATGTCCCAGACATGGTCTTACACTATCTCACATCTCATACCGATGCATGTCCCAGACATGGTCT
TACATTGCTTACATCTGAGGCCGATA
Found at i:23115343 original size:48 final size:47
Alignment explanation
Indices: 23115069--23115385 Score: 230
Period size: 46 Copynumber: 6.7 Consensus size: 47
23115059 GGGTATAATG
* *
23115069 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCGTA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT--CATCT-CATA
* * *
23115119 CTGATGTCATGTCCCAGACATGGTCTTACACTAG--CACATCT-ATA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCATA
* * * *
23115163 CGTGTCGATGCCATGTCCTAGACATGGTCTTACAAT-G-ACACATCTCATA
1 C----CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCATA
* * **
23115212 GCCGATG-CATGTCCTAGACAT-GTCTTACA-TTGC-CTTACATCTCGAGG
1 -CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC-T-CATCTC-ATA
* *
23115259 CCGAT-ACATGTCCCAGACAT-GTCTTACACTATCTCTCATCTCAATA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTC-ATA
* * * *
23115305 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-CTCAT-A
*
23115353 CCGATG-CATGTCCCAGAAAT-GTCTTACACTAGC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGC
23115386 ACACAAATAA
Statistics
Matches: 222, Mismatches: 26, Indels: 42
0.77 0.09 0.14
Matches are distributed among these distances:
43 1 0.00
44 13 0.06
45 14 0.06
46 65 0.29
47 33 0.15
48 59 0.27
49 4 0.02
50 33 0.15
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (47 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCATA
Found at i:23124816 original size:19 final size:19
Alignment explanation
Indices: 23124772--23124818 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
23124762 AATTCACACA
*
23124772 AGTAAGCTTATTGAAGCTT
1 AGTAAGTTTATTGAAGCTT
23124791 AGTAAGTTTATTGAAGCTT
1 AGTAAGTTTATTGAAGCTT
23124810 AGTAAGTTT
1 AGTAAGTTT
23124819 GAGGAACAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.32, C:0.06, G:0.21, T:0.40
Consensus pattern (19 bp):
AGTAAGTTTATTGAAGCTT
Found at i:23125453 original size:11 final size:11
Alignment explanation
Indices: 23125437--23125468 Score: 55
Period size: 11 Copynumber: 2.8 Consensus size: 11
23125427 GCATACTAAC
23125437 TTCAAATCAAT
1 TTCAAATCAAT
23125448 TTCAAATCAAT
1 TTCAAATCAAT
23125459 TTCAACATCA
1 TTCAA-ATCA
23125469 GGGGACACAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 16 0.80
12 4 0.20
ACGTcount: A:0.44, C:0.22, G:0.00, T:0.34
Consensus pattern (11 bp):
TTCAAATCAAT
Found at i:23127878 original size:37 final size:37
Alignment explanation
Indices: 23127821--23127940 Score: 159
Period size: 37 Copynumber: 3.2 Consensus size: 37
23127811 AACCAATTGA
* * * *
23127821 AACACACCAATCGCTCATAAGAGCTAATCCATCCGAT
1 AACACGCCAAACGCTTATAAGAGCTAATCCAACCGAT
* *
23127858 AACACGTCAAACGCTTATAAGAGCTAATCCAACGGAT
1 AACACGCCAAACGCTTATAAGAGCTAATCCAACCGAT
* *
23127895 AACACGCCAAACACTTATAAGAGCTAATCCAACTGAT
1 AACACGCCAAACGCTTATAAGAGCTAATCCAACCGAT
*
23127932 AACTCGCCA
1 AACACGCCA
23127941 GATCAAGGTA
Statistics
Matches: 73, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 73 1.00
ACGTcount: A:0.40, C:0.29, G:0.12, T:0.18
Consensus pattern (37 bp):
AACACGCCAAACGCTTATAAGAGCTAATCCAACCGAT
Found at i:23132954 original size:21 final size:21
Alignment explanation
Indices: 23132928--23132973 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
23132918 AACATGGCCG
*
23132928 TGTGGCTAAC-CCATACGCCCA
1 TGTGGCT-ACTCCACACGCCCA
*
23132949 TGTGGCTACTCCACACGCCCG
1 TGTGGCTACTCCACACGCCCA
23132970 TGTG
1 TGTG
23132974 TAGTCCCATG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 2 0.09
21 20 0.91
ACGTcount: A:0.17, C:0.37, G:0.24, T:0.22
Consensus pattern (21 bp):
TGTGGCTACTCCACACGCCCA
Found at i:23133804 original size:5 final size:5
Alignment explanation
Indices: 23133794--23133824 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
23133784 TGAAACATTG
23133794 CATAA CATAA CATAA CATAA CATAA CATAA C
1 CATAA CATAA CATAA CATAA CATAA CATAA C
23133825 CAATTCTCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.58, C:0.23, G:0.00, T:0.19
Consensus pattern (5 bp):
CATAA
Found at i:23145396 original size:57 final size:57
Alignment explanation
Indices: 23145302--23145421 Score: 213
Period size: 57 Copynumber: 2.1 Consensus size: 57
23145292 AATATCGTCG
** *
23145302 ATAAATATGAAAACAAATCTATCTTAATATGTTTGAAATATCCTATTCATTAAGTTC
1 ATAAATATGAAAACAAATCTATCTTAATATGGCTGAAATATCCTATTCATTAAGTCC
23145359 ATAAATATGAAAACAAATCTATCTTAATATGGCTGAAATATCCTATTCATTAAGTCC
1 ATAAATATGAAAACAAATCTATCTTAATATGGCTGAAATATCCTATTCATTAAGTCC
23145416 ATAAAT
1 ATAAAT
23145422 GCAGTCAAAA
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 60 1.00
ACGTcount: A:0.43, C:0.13, G:0.07, T:0.36
Consensus pattern (57 bp):
ATAAATATGAAAACAAATCTATCTTAATATGGCTGAAATATCCTATTCATTAAGTCC
Found at i:23148475 original size:43 final size:43
Alignment explanation
Indices: 23148422--23148507 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 43
23148412 ATGCAATTTC
* * * *
23148422 TATACACTTTGGGAGTGGCTCCCCTAGCTTTGGTAATCACTTT
1 TATACACTTTGGAAATAGCTCCCCTAGCTTTGGCAATCACTTT
*
23148465 TATACTCTTTGGAAATAGCTCCCCTAGCTTTGGCAATCACTTT
1 TATACACTTTGGAAATAGCTCCCCTAGCTTTGGCAATCACTTT
23148508 ATAGCATTAT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.37
Consensus pattern (43 bp):
TATACACTTTGGAAATAGCTCCCCTAGCTTTGGCAATCACTTT
Found at i:23148773 original size:38 final size:40
Alignment explanation
Indices: 23148721--23148812 Score: 116
Period size: 38 Copynumber: 2.4 Consensus size: 40
23148711 CGTTTGAATG
*
23148721 AAAAATGCCACTAAAGAACGAGCATTAGCGGCGC-TTTTA
1 AAAAACGCCACTAAAGAACGAGCATTAGCGGCGCTTTTTA
** *
23148760 AAAAACGCC-CTAAAGATTGAGTATTAGCGGCGCTTTTTA
1 AAAAACGCCACTAAAGAACGAGCATTAGCGGCGCTTTTTA
* *
23148799 GAAAACGCCGCTAA
1 AAAAACGCCACTAA
23148813 TTCTTGATCT
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
38 21 0.46
39 21 0.46
40 4 0.09
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.22
Consensus pattern (40 bp):
AAAAACGCCACTAAAGAACGAGCATTAGCGGCGCTTTTTA
Found at i:23148937 original size:91 final size:93
Alignment explanation
Indices: 23148825--23149005 Score: 312
Period size: 91 Copynumber: 2.0 Consensus size: 93
23148815 CTTGATCTTT
*
23148825 AACGCTGCAAAAAATTAACACAACATATTGAGCCTTTAGTGGCTTTAGCGGCGC-TTTTTAA-AA
1 AACGCCGCAAAAAATTAACACAACATATTGAGCCTTTAGTGGCTTTAGCGGCGCTTTTTTAAGAA
*
23148888 AACCGCTAAAGATCAAGTATTAGCAAAA
66 AACCGCTAAAGATCAAGTAATAGCAAAA
*
23148916 AACGCCGCAAAAAATTAACACAACATATTGAGCCTTTAGTGGCTTTAGCGGCTCTTTTTTAAGAA
1 AACGCCGCAAAAAATTAACACAACATATTGAGCCTTTAGTGGCTTTAGCGGCGCTTTTTTAAGAA
*
23148981 CACCGCTAAAGATCAAGTAATAGCA
66 AACCGCTAAAGATCAAGTAATAGCA
23149006 GCGTTTTTAA
Statistics
Matches: 84, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
91 52 0.62
92 7 0.08
93 25 0.30
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.25
Consensus pattern (93 bp):
AACGCCGCAAAAAATTAACACAACATATTGAGCCTTTAGTGGCTTTAGCGGCGCTTTTTTAAGAA
AACCGCTAAAGATCAAGTAATAGCAAAA
Found at i:23149054 original size:40 final size:39
Alignment explanation
Indices: 23149001--23149103 Score: 118
Period size: 40 Copynumber: 2.6 Consensus size: 39
23148991 GATCAAGTAA
*
23149001 TAGCAGCGTTTTTAAAAAACGCCGCTATATG-TACACCTT
1 TAGCGGCGTTTTTAAAAAACGCCGCTA-ATGCTACACCTT
* * ** *
23149040 TAGCGGCGCTTTTTAGAAGACGCCGCTAATGCTTGATCTT
1 TAGCGGCG-TTTTTAAAAAACGCCGCTAATGCTACACCTT
23149080 TAGCGGCGATTTTTAAAAAACGCC
1 TAGCGGCG-TTTTTAAAAAACGCC
23149104 ACAAAAAATG
Statistics
Matches: 53, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
39 10 0.19
40 43 0.81
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.30
Consensus pattern (39 bp):
TAGCGGCGTTTTTAAAAAACGCCGCTAATGCTACACCTT
Found at i:23149301 original size:21 final size:21
Alignment explanation
Indices: 23149255--23149422 Score: 72
Period size: 22 Copynumber: 7.8 Consensus size: 21
23149245 TTAATTATCA
* *
23149255 TTATAGTTTAGGGTTTATGGT
1 TTATGGTTAAGGGTTTATGGT
*
23149276 ATATGGTTAAGGGTTTAAT-GT
1 TTATGGTTAAGGGTTT-ATGGT
**** *
23149297 TTATGAGTTACTATTTTAAGGT
1 TTATG-GTTAAGGGTTTATGGT
* * *
23149319 TTATGGATTATGGGTTTAGGGA
1 TTATGG-TTAAGGGTTTATGGT
* * *
23149341 TTATGGTTTATGGATTATGGGT
1 TTATGGTTAAGGGTTTAT-GGT
* * *
23149363 TTAGGGATTATGGGTTTA-GGAA
1 TTATGG-TTAAGGGTTTATGG-T
* *
23149385 TTATGGTTTATGGTTTATGAGT
1 TTATGGTTAAGGGTTTATG-GT
*
23149407 TAATGGTT-AGGGTTTA
1 TTATGGTTAAGGGTTTA
23149423 AGTTTTAGAG
Statistics
Matches: 104, Mismatches: 34, Indels: 18
0.67 0.22 0.12
Matches are distributed among these distances:
21 45 0.43
22 51 0.49
23 8 0.08
ACGTcount: A:0.23, C:0.01, G:0.30, T:0.46
Consensus pattern (21 bp):
TTATGGTTAAGGGTTTATGGT
Found at i:23149329 original size:7 final size:7
Alignment explanation
Indices: 23149319--23149403 Score: 55
Period size: 7 Copynumber: 11.7 Consensus size: 7
23149309 ATTTTAAGGT
23149319 TTATGGA
1 TTATGGA
*
23149326 TTATGGGT
1 TTAT-GGA
*
23149334 TTAGGGA
1 TTATGGA
*
23149341 TTATGGT
1 TTATGGA
23149348 TTATGGA
1 TTATGGA
*
23149355 TTATGGGT
1 TTAT-GGA
*
23149363 TTAGGGA
1 TTATGGA
*
23149370 TTATGGG
1 TTATGGA
23149377 TT-TAGGAA
1 TTAT-GG-A
*
23149385 TTATGGT
1 TTATGGA
*
23149392 TTATGGT
1 TTATGGA
23149399 TTATG
1 TTATG
23149404 AGTTAATGGT
Statistics
Matches: 60, Mismatches: 13, Indels: 10
0.72 0.16 0.12
Matches are distributed among these distances:
6 1 0.02
7 44 0.73
8 14 0.23
9 1 0.02
ACGTcount: A:0.21, C:0.00, G:0.33, T:0.46
Consensus pattern (7 bp):
TTATGGA
Found at i:23149336 original size:15 final size:15
Alignment explanation
Indices: 23149316--23149422 Score: 125
Period size: 15 Copynumber: 7.4 Consensus size: 15
23149306 ACTATTTTAA
23149316 GGTTTATGGATTATG
1 GGTTTATGGATTATG
*
23149331 GGTTTAGGGATTAT-
1 GGTTTATGGATTATG
23149345 GGTTTATGGATTATG
1 GGTTTATGGATTATG
*
23149360 GGTTTAGGGATTATG
1 GGTTTATGGATTATG
23149375 GGTTTA-GGAATTAT-
1 GGTTTATGG-ATTATG
*
23149389 GGTTTATGGTTTATG
1 GGTTTATGGATTATG
* *
23149404 AGTTAATGG-TTA-G
1 GGTTTATGGATTATG
23149417 GGTTTA
1 GGTTTA
23149423 AGTTTTAGAG
Statistics
Matches: 80, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
13 5 0.06
14 28 0.35
15 47 0.59
ACGTcount: A:0.21, C:0.00, G:0.34, T:0.45
Consensus pattern (15 bp):
GGTTTATGGATTATG
Found at i:23149348 original size:29 final size:29
Alignment explanation
Indices: 23149316--23149422 Score: 132
Period size: 29 Copynumber: 3.7 Consensus size: 29
23149306 ACTATTTTAA
23149316 GGTTTATGGATTATGGGTTTAGGGATTAT
1 GGTTTATGGATTATGGGTTTAGGGATTAT
23149345 GGTTTATGGATTATGGGTTTAGGGATTAT
1 GGTTTATGGATTATGGGTTTAGGGATTAT
* *
23149374 GGGTTTA-GGAATTAT-GGTTTATGGTTTAT
1 -GGTTTATGG-ATTATGGGTTTAGGGATTAT
*
23149403 GAGTTAATGG-TTA-GGGTTTA
1 G-GTTTATGGATTATGGGTTTA
23149423 AGTTTTAGAG
Statistics
Matches: 70, Mismatches: 3, Indels: 11
0.83 0.04 0.13
Matches are distributed among these distances:
28 10 0.14
29 47 0.67
30 13 0.19
ACGTcount: A:0.21, C:0.00, G:0.34, T:0.45
Consensus pattern (29 bp):
GGTTTATGGATTATGGGTTTAGGGATTAT
Found at i:23149474 original size:50 final size:49
Alignment explanation
Indices: 23149389--23149485 Score: 124
Period size: 50 Copynumber: 2.0 Consensus size: 49
23149379 TAGGAATTAT
* * * *
23149389 GGTTTATGGTTTATGAGTTAATGGTTAGGGTTTAAGTTTTAGAGGGTTGG
1 GGTTTAAGGTTTATGAGTTAAAGGTTAGCGTTTAAGTGTTA-AGGGTTGG
*
23149439 GGTTTAAGGTTTATGGGTTAAAGGTTAAGCG-TTAAGTGTTAAGGGTT
1 GGTTTAAGGTTTATGAGTTAAAGGTT-AGCGTTTAAGTGTTAAGGGTT
23149486 TATGTTTTAT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
49 6 0.15
50 32 0.78
51 3 0.07
ACGTcount: A:0.23, C:0.01, G:0.35, T:0.41
Consensus pattern (49 bp):
GGTTTAAGGTTTATGAGTTAAAGGTTAGCGTTTAAGTGTTAAGGGTTGG
Found at i:23150182 original size:14 final size:13
Alignment explanation
Indices: 23150163--23150213 Score: 50
Period size: 14 Copynumber: 3.8 Consensus size: 13
23150153 TGACTTTTTT
23150163 ATTTATAAAAACTA
1 ATTTATAAAAA-TA
23150177 ATTTATAAAAAATA
1 ATTTAT-AAAAATA
*
23150191 A-TAATAATAAATA
1 ATTTATAA-AAATA
*
23150204 TTTTATAAAA
1 ATTTATAAAA
23150214 TTATTTAACT
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
12 2 0.06
13 10 0.32
14 14 0.45
15 5 0.16
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (13 bp):
ATTTATAAAAATA
Found at i:23154269 original size:75 final size:75
Alignment explanation
Indices: 23154179--23154329 Score: 266
Period size: 75 Copynumber: 2.0 Consensus size: 75
23154169 TGCTTCCTTG
23154179 TACTCATTCTCATCCTCTTTATATTTTCCAATGCTTTCTTCAAGTAGGATACTAAGAATCTCCTA
1 TACTCATTCTCATCCTCTTTATATTTTCCAATGCTTTCTTCAAGTAGGATACTAAGAATCTCCTA
23154244 TACTATTCTT
66 TACTATTCTT
* * * *
23154254 TACTCATTCTCATCCTCTTTATATTTTCCTATGCTTTCTTCAAGTAGGATGCTAAGAATTTCCTG
1 TACTCATTCTCATCCTCTTTATATTTTCCAATGCTTTCTTCAAGTAGGATACTAAGAATCTCCTA
23154319 TACTATTCTT
66 TACTATTCTT
23154329 T
1 T
23154330 CTGATTGCTT
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
75 72 1.00
ACGTcount: A:0.23, C:0.23, G:0.08, T:0.46
Consensus pattern (75 bp):
TACTCATTCTCATCCTCTTTATATTTTCCAATGCTTTCTTCAAGTAGGATACTAAGAATCTCCTA
TACTATTCTT
Found at i:23154728 original size:53 final size:53
Alignment explanation
Indices: 23154646--23154747 Score: 123
Period size: 53 Copynumber: 1.9 Consensus size: 53
23154636 AAAAAGTGCC
**
23154646 GCTAAAAGCCATGGCCTTTAGCAAAGTTTGTTAAAAAAGCGCCGCTAAAAGCA
1 GCTAAAAGCCATGGCCTTTAGCAAAGTTTGCGAAAAAAGCGCCGCTAAAAGCA
* * *** * *
23154699 GCTAAAGGTCATGGCCTTTAGCGGCGTTTGCGAAAAAGGTGCCGCTAAA
1 GCTAAAAGCCATGGCCTTTAGCAAAGTTTGCGAAAAAAGCGCCGCTAAA
23154748 GGTCATGGCC
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
53 40 1.00
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.22
Consensus pattern (53 bp):
GCTAAAAGCCATGGCCTTTAGCAAAGTTTGCGAAAAAAGCGCCGCTAAAAGCA
Found at i:23163216 original size:19 final size:18
Alignment explanation
Indices: 23163176--23163215 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
23163166 ATTTTGGGAC
*
23163176 TTTTATAAATATTTTGAA
1 TTTTAAAAATATTTTGAA
23163194 TTTTAAAAATAATTTTG-A
1 TTTTAAAAAT-ATTTTGAA
23163212 TTTT
1 TTTT
23163216 TTTTGTAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (18 bp):
TTTTAAAAATATTTTGAA
Found at i:23168691 original size:26 final size:26
Alignment explanation
Indices: 23168661--23168768 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
23168651 TAAAATTCCC
*
23168661 ATCATGGAACAATTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
23168687 ATCATGGAACATTTACCTAACCCTTT
1 ATCATGGAACATTTACCTAACCCATT
* *
23168713 ATCATGAAACATTTACCTAACTCATT
1 ATCATGGAACATTTACCTAACCCATT
*
23168739 ATCATAGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
23168765 ATCA
1 ATCA
23168769 ATTTGTATCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.37, C:0.26, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:23169992 original size:45 final size:45
Alignment explanation
Indices: 23169931--23170021 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
23169921 AAACTATGTG
23169931 ATCTAAACTCAATGAGTTGTGGTCCGAGTTCATGATATATGTGAC
1 ATCTAAACTCAATGAGTTGTGGTCCGAGTTCATGATATATGTGAC
* * * *
23169976 ATCTGAACTCATTGAGTTGTGGTCTGAGTTCATGATGTATGTGAC
1 ATCTAAACTCAATGAGTTGTGGTCCGAGTTCATGATATATGTGAC
23170021 A
1 A
23170022 CATGTTTTGG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.35
Consensus pattern (45 bp):
ATCTAAACTCAATGAGTTGTGGTCCGAGTTCATGATATATGTGAC
Found at i:23173115 original size:19 final size:19
Alignment explanation
Indices: 23173087--23173123 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
23173077 TAAATATGAT
23173087 GGTCTTAAATG-GTAATTA
1 GGTCTTAAATGTGTAATTA
23173105 GGTCATTAAATGTGTAATT
1 GGTC-TTAAATGTGTAATT
23173124 GGATATTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 7 0.41
20 6 0.35
ACGTcount: A:0.32, C:0.05, G:0.22, T:0.41
Consensus pattern (19 bp):
GGTCTTAAATGTGTAATTA
Found at i:23175791 original size:40 final size:40
Alignment explanation
Indices: 23175712--23175873 Score: 218
Period size: 40 Copynumber: 4.0 Consensus size: 40
23175702 CGGATGATAA
* * * *
23175712 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * * *
23175752 CCGGGCTATGTCCCGAAAGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
23175792 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
23175832 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
23175872 CC
1 CC
23175874 AGCTAAATCC
Statistics
Matches: 104, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 100 0.96
41 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:23176156 original size:22 final size:22
Alignment explanation
Indices: 23176116--23176157 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
23176106 GAATGTGCAT
*
23176116 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
23176138 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
23176158 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:23178008 original size:35 final size:35
Alignment explanation
Indices: 23177960--23178027 Score: 109
Period size: 35 Copynumber: 1.9 Consensus size: 35
23177950 CGGGCGTGTG
*
23177960 TACTAGCCATGTGAGGCACACGGCCTGTTCACATC
1 TACTAGCCATGTGAGGCACACAGCCTGTTCACATC
* *
23177995 TACTAGCCGTGTGAGGGACACAGCCTGTTCACA
1 TACTAGCCATGTGAGGCACACAGCCTGTTCACA
23178028 CTGGCATGTG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (35 bp):
TACTAGCCATGTGAGGCACACAGCCTGTTCACATC
Found at i:23182433 original size:22 final size:22
Alignment explanation
Indices: 23182384--23182434 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
23182374 ATGAATAAAA
*
23182384 GAAAATATATATATATAATTTT
1 GAAAATATATATATATAATTAT
*
23182406 GTAAATATATATATAT-ATATAT
1 GAAAATATATATATATAAT-TAT
23182428 GAAAATA
1 GAAAATA
23182435 ATTTGATATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 2 0.08
22 23 0.92
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (22 bp):
GAAAATATATATATATAATTAT
Found at i:23183093 original size:18 final size:18
Alignment explanation
Indices: 23183061--23183100 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 18
23183051 ATAAAATTTA
23183061 TTAAACTTTAATAAAAAAT
1 TTAAACTTTAAT-AAAAAT
*
23183080 TTAAA-TTTACTAAAAAT
1 TTAAACTTTAATAAAAAT
23183097 TTAA
1 TTAA
23183101 TAATTATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 10 0.50
18 5 0.25
19 5 0.25
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (18 bp):
TTAAACTTTAATAAAAAT
Found at i:23185558 original size:13 final size:14
Alignment explanation
Indices: 23185529--23185561 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
23185519 AATGGGAGAT
23185529 GAAGAAAATAGTGAA
1 GAAG-AAATAGTGAA
23185544 GAAGAAATA-TGAA
1 GAAGAAATAGTGAA
23185557 GAAGA
1 GAAGA
23185562 TAGTGTGGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 9 0.50
14 5 0.28
15 4 0.22
ACGTcount: A:0.61, C:0.00, G:0.27, T:0.12
Consensus pattern (14 bp):
GAAGAAATAGTGAA
Found at i:23192904 original size:15 final size:15
Alignment explanation
Indices: 23192884--23192913 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
23192874 ATAATCCTAA
*
23192884 TAATTATCTTAATAT
1 TAATTATCCTAATAT
23192899 TAATTATCCTAATAT
1 TAATTATCCTAATAT
23192914 AAATAAAATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Done.