Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 79 of 343
Found at i:26072914 original size:12 final size:12
Alignment explanation
Indices: 26072899--26072923 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26072889 TGATTATAGG
26072899 TAAATTTATATA
1 TAAATTTATATA
26072911 TAAATTTATATA
1 TAAATTTATATA
26072923 T
1 T
26072924 TCTAGTTGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
TAAATTTATATA
Found at i:26080080 original size:262 final size:266
Alignment explanation
Indices: 26079585--26080086 Score: 730
Period size: 269 Copynumber: 1.9 Consensus size: 266
26079575 ATAGATGTCC
* * * * *
26079585 CTTGGTGGTCTCTAGCTTTCGTTCAGCACTGCCTTTTAGCTGCTCTGACTCAACAACCCTATTGC
1 CTTGGTGGTCTATAGCTTCCGTTCAGCACTGCCTTTTAGCCGCTCTCACTCAACAACCATATTGC
*
26079650 GGAGCTCCTCATTCTGCCTTTGTATAACCAAAGGTCCAAACATTTCATCAATTCTCAGCAATGCT
66 GGAGCTCCTCATTCTGCCTGTGTATAACCAAAGGTCCAAACATTTCATCAATTCT-A-CAATGC-
* *
26079715 TTCAAAAAACGACAAGGAACTATGTGGTCATTATTAAAGATAAAGTTATGAATTAAAAACAAACC
128 TTCAAAAAACGACAAGGAACCATGTGGTCATTATTAAAGATAAAGGTATGAATTAAAAACAAACC
26079780 TTCAGATCTACAACAAGTTTCATTGCATTTTCATTGGCCACCATAATGCGTTCCTCAGCAATGGA
193 TTCAGATCTACAACAAGTTTCATTGCATTTTCATTGGCCACCATAATGCGTTCCTCAGCAATGGA
26079845 AAGACGTTA
258 AAGACGTTA
*
26079854 CTTGGTGGTCTATAG-TTCCTGTTCCGCACTGCCTTTTAGCCGCTC-CACCTCAACAACCATATT
1 CTTGGTGGTCTATAGCTTCC-GTTCAGCACTGCCTTTTAGCCGCTCTCA-CTCAACAACCATATT
* **
26079917 GCGGAGCTCCTCATTCTGCCTGTGTATAACCAATGGTCCAGCCATTTCATCAATTCT-C-A-G-T
64 GCGGAGCTCCTCATTCTGCCTGTGTATAACCAAAGGTCCAAACATTTCATCAATTCTACAATGCT
* * *
26079978 TCAAAAAATGACAAGGAACCATGTGGTCGTTATTAAAGATAAAGGTATGAATTACAAAA-TAACC
129 TCAAAAAACGACAAGGAACCATGTGGTCATTATTAAAGATAAAGGTATGAATTA-AAAACAAACC
** * *
26080042 TTCAGATCTTGAGCAAGTTTCATTGCATTTTCATTGGCCTCCATA
193 TTCAGATCTACAACAAGTTTCATTGCATTTTCATTGGCCACCATA
26080087 GTACGCTGCC
Statistics
Matches: 211, Mismatches: 19, Indels: 13
0.87 0.08 0.05
Matches are distributed among these distances:
262 96 0.45
263 4 0.02
264 1 0.00
265 1 0.00
266 1 0.00
268 4 0.02
269 104 0.49
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (266 bp):
CTTGGTGGTCTATAGCTTCCGTTCAGCACTGCCTTTTAGCCGCTCTCACTCAACAACCATATTGC
GGAGCTCCTCATTCTGCCTGTGTATAACCAAAGGTCCAAACATTTCATCAATTCTACAATGCTTC
AAAAAACGACAAGGAACCATGTGGTCATTATTAAAGATAAAGGTATGAATTAAAAACAAACCTTC
AGATCTACAACAAGTTTCATTGCATTTTCATTGGCCACCATAATGCGTTCCTCAGCAATGGAAAG
ACGTTA
Found at i:26081895 original size:5 final size:5
Alignment explanation
Indices: 26081885--26081913 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
26081875 TCCATTCTTT
26081885 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
26081914 GTTCTGTTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTTA
Found at i:26082588 original size:58 final size:58
Alignment explanation
Indices: 26082509--26082638 Score: 190
Period size: 58 Copynumber: 2.2 Consensus size: 58
26082499 TTTTAATAAG
* * *
26082509 ATTATTATTAAAAATAATTTAATAAAAATAATAAATAATTTAATCATATT-TTAACATA
1 ATTATTATTAAATATAATTTAAT-AAAATAATAAACAATTTAATAATATTCTTAACATA
* *
26082567 ATTATTATTAAATATAATTTAATAAAATAATATACAATTTAATAATATTCTTAATATA
1 ATTATTATTAAATATAATTTAATAAAATAATAAACAATTTAATAATATTCTTAACATA
26082625 ATTATTATATAAAT
1 ATTATTAT-TAAAT
26082639 TAAAAAAATT
Statistics
Matches: 65, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
57 23 0.35
58 37 0.57
59 5 0.08
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (58 bp):
ATTATTATTAAATATAATTTAATAAAATAATAAACAATTTAATAATATTCTTAACATA
Found at i:26084600 original size:35 final size:35
Alignment explanation
Indices: 26084554--26084625 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
26084544 ACAAAGATAT
26084554 TTAGCATTAACAAACAGAAAATATAAGGTAAAATG
1 TTAGCATTAACAAACAGAAAATATAAGGTAAAATG
*
26084589 TTAGCATTAACAAACAGATAATATAAGGTAAAATG
1 TTAGCATTAACAAACAGAAAATATAAGGTAAAATG
26084624 TT
1 TT
26084626 TAACAATCAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.51, C:0.08, G:0.14, T:0.26
Consensus pattern (35 bp):
TTAGCATTAACAAACAGAAAATATAAGGTAAAATG
Found at i:26089682 original size:30 final size:32
Alignment explanation
Indices: 26089646--26089705 Score: 81
Period size: 30 Copynumber: 1.9 Consensus size: 32
26089636 ATCAATTTTA
26089646 AAAAATT-ATAAAAATAAAT-ATAAA-TATATC
1 AAAAATTCA-AAAAATAAATAATAAAGTATATC
*
26089676 AAAAATTCAAAAAATATATAATAAAGTATA
1 AAAAATTCAAAAAATAAATAATAAAGTATA
26089706 AAAATAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
30 16 0.62
31 6 0.23
32 4 0.15
ACGTcount: A:0.67, C:0.03, G:0.02, T:0.28
Consensus pattern (32 bp):
AAAAATTCAAAAAATAAATAATAAAGTATATC
Found at i:26090748 original size:27 final size:27
Alignment explanation
Indices: 26090718--26090807 Score: 69
Period size: 27 Copynumber: 3.1 Consensus size: 27
26090708 AAGATAAAAT
26090718 TATTAGTATTTATTTGCAAGTCTTCCA
1 TATTAGTATTTATTTGCAAGTCTTCCA
* *
26090745 TATTTTA-TATTTAATTT--AATGATGATGTGTCA
1 TA--TTAGTATTT-ATTTGCAA-G-T-CT-T-CCA
26090777 TATTAGTATTTATTTGCAAGTCTTCCA
1 TATTAGTATTTATTTGCAAGTCTTCCA
26090804 TATT
1 TATT
26090808 TTATATTTAA
Statistics
Matches: 48, Mismatches: 4, Indels: 22
0.65 0.05 0.30
Matches are distributed among these distances:
27 10 0.21
28 7 0.15
29 9 0.19
30 9 0.19
31 7 0.15
32 6 0.12
ACGTcount: A:0.28, C:0.10, G:0.11, T:0.51
Consensus pattern (27 bp):
TATTAGTATTTATTTGCAAGTCTTCCA
Found at i:26090780 original size:32 final size:31
Alignment explanation
Indices: 26090743--26090851 Score: 90
Period size: 30 Copynumber: 3.6 Consensus size: 31
26090733 GCAAGTCTTC
26090743 CATATTTTATATTTAATTTAATGATGATGTGT
1 CATATTTTATATTT-ATTTAATGATGATGTGT
* *
26090775 CATA--TTAGTATTTATTTGCAA-G-T-CT-T-C
1 CATATTTTA-TATTTATTT--AATGATGATGTGT
26090802 CATATTTTATATTTAATTTAATGATGATGTGT
1 CATATTTTATATTT-ATTTAATGATGATGTGT
*
26090834 CATATTAT-TATTTATTTA
1 CATATTTTATATTTATTTA
26090852 CAGTGCATGA
Statistics
Matches: 61, Mismatches: 5, Indels: 24
0.68 0.06 0.27
Matches are distributed among these distances:
27 6 0.10
28 7 0.11
29 9 0.15
30 14 0.23
31 12 0.20
32 13 0.21
ACGTcount: A:0.30, C:0.06, G:0.10, T:0.53
Consensus pattern (31 bp):
CATATTTTATATTTATTTAATGATGATGTGT
Found at i:26090810 original size:59 final size:59
Alignment explanation
Indices: 26090718--26090850 Score: 257
Period size: 59 Copynumber: 2.3 Consensus size: 59
26090708 AAGATAAAAT
26090718 TATTAGTATTTATTTGCAAGTCTTCCATATTTTATATTTAATTTAATGATGATGTGTCA
1 TATTAGTATTTATTTGCAAGTCTTCCATATTTTATATTTAATTTAATGATGATGTGTCA
26090777 TATTAGTATTTATTTGCAAGTCTTCCATATTTTATATTTAATTTAATGATGATGTGTCA
1 TATTAGTATTTATTTGCAAGTCTTCCATATTTTATATTTAATTTAATGATGATGTGTCA
*
26090836 TATTATTATTTATTT
1 TATTAGTATTTATTT
26090851 ACAGTGCATG
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
59 73 1.00
ACGTcount: A:0.29, C:0.08, G:0.11, T:0.53
Consensus pattern (59 bp):
TATTAGTATTTATTTGCAAGTCTTCCATATTTTATATTTAATTTAATGATGATGTGTCA
Found at i:26091450 original size:24 final size:24
Alignment explanation
Indices: 26091414--26091472 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
26091404 TTTTAATATT
*
26091414 ATCATAAAAATATAA-ATTAATAAAA
1 ATCAT-AATATATAATATT-ATAAAA
26091439 ATCATAATATATAATATTATAAAA
1 ATCATAATATATAATATTATAAAA
*
26091463 ATAAT-ATATA
1 ATCATAATATA
26091473 ACCCACTTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
23 5 0.16
24 18 0.58
25 8 0.26
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (24 bp):
ATCATAATATATAATATTATAAAA
Found at i:26092361 original size:18 final size:18
Alignment explanation
Indices: 26092340--26092409 Score: 65
Period size: 18 Copynumber: 4.0 Consensus size: 18
26092330 TCGAATTTTT
26092340 TTTTTG-AAACCCGAGAGA
1 TTTTTGAAAACCCGAGA-A
* * *
26092358 -TTTTGAAAACACAAAAA
1 TTTTTGAAAACCCGAGAA
*
26092375 TTTTTGAAAACCTGAGAA
1 TTTTTGAAAACCCGAGAA
*
26092393 TCTTTG-AAACCCGAGAA
1 TTTTTGAAAACCCGAGAA
26092410 ATTAAAAAAA
Statistics
Matches: 41, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
17 16 0.39
18 25 0.61
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.27
Consensus pattern (18 bp):
TTTTTGAAAACCCGAGAA
Found at i:26092441 original size:17 final size:17
Alignment explanation
Indices: 26092341--26092441 Score: 53
Period size: 17 Copynumber: 5.8 Consensus size: 17
26092331 CGAATTTTTT
* *
26092341 TTTTGAAACCCGAGAGA
1 TTTTGAAACCCGAAAAA
*
26092358 TTTTGAAAACAC-AAAAA
1 TTTTG-AAACCCGAAAAA
* *
26092375 TTTTTGAAAACCTG-AGAA
1 -TTTTG-AAACCCGAAAAA
*
26092393 TCTTTGAAACCCGAGAAA
1 T-TTTGAAACCCGAAAAA
*** **
26092411 TTAAAAAAAACGAAAAA
1 TTTTGAAACCCGAAAAA
26092428 TTTTGAAACCCGAA
1 TTTTGAAACCCGAA
26092442 TTTTTTTATA
Statistics
Matches: 59, Mismatches: 20, Indels: 10
0.66 0.22 0.11
Matches are distributed among these distances:
17 34 0.58
18 25 0.42
ACGTcount: A:0.48, C:0.15, G:0.14, T:0.24
Consensus pattern (17 bp):
TTTTGAAACCCGAAAAA
Found at i:26093199 original size:36 final size:35
Alignment explanation
Indices: 26093121--26093210 Score: 101
Period size: 36 Copynumber: 2.5 Consensus size: 35
26093111 AACCAAACTA
*
26093121 AACCCAACTCACTAATTAAAAAAAAAATACAAACC
1 AACCCAACTCACTAATTAAAAAAAAAACACAAACC
***
26093156 AACCCAACTCACTAACTTAAGAAACCCAACAC-AACC
1 AACCCAACTCACTAA-TTAA-AAAAAAAACACAAACC
* *
26093192 AACCCAACCCATTAATTAA
1 AACCCAACTCACTAATTAA
26093211 CCCAAACCAA
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
35 19 0.40
36 21 0.45
37 7 0.15
ACGTcount: A:0.52, C:0.32, G:0.01, T:0.14
Consensus pattern (35 bp):
AACCCAACTCACTAATTAAAAAAAAAACACAAACC
Found at i:26093946 original size:29 final size:30
Alignment explanation
Indices: 26093908--26093994 Score: 115
Period size: 30 Copynumber: 3.0 Consensus size: 30
26093898 TGTAATTTTT
*
26093908 AGAAAA-TTTA-GGGTCAAAATGCAATTTA
1 AGAAAAGTTTAGGGGTCAAAATACAATTTA
* *
26093936 ATAAAAGTTTAGGGGTCAAAATATAATTTA
1 AGAAAAGTTTAGGGGTCAAAATACAATTTA
* *
26093966 AGAAAAGTTTATGGGTCAAAATATAATTT
1 AGAAAAGTTTAGGGGTCAAAATACAATTT
26093995 TTTATTTTTC
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
28 5 0.10
29 4 0.08
30 43 0.83
ACGTcount: A:0.46, C:0.05, G:0.17, T:0.32
Consensus pattern (30 bp):
AGAAAAGTTTAGGGGTCAAAATACAATTTA
Found at i:26094373 original size:80 final size:80
Alignment explanation
Indices: 26094255--26094658 Score: 491
Period size: 78 Copynumber: 5.0 Consensus size: 80
26094245 TGAGTTGATC
* * *
26094255 TTTGAAAAAGCAGAAAATTGAAAATACCTCAGCATGTGACCTGAGGCTTAACTCACCTCTCGCAA
1 TTTGAAAAA-CAG-AAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAA
26094320 TATGAGTTGATTTTTTT
64 TATGAGTTGATTTTTTT
* *
26094337 TTTGAAAAAAAGAAATTGAAAATACCTCAGCGTGTGACCCGAGCCTCAACTCACCTCTCGCAATA
1 TTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATA
26094402 TGAGTTGA---TTTT
66 TGAGTTGATTTTTTT
* *
26094414 TTTGAAAGACATAAATTGAAAAATACCTC-GACGTGTGACCCGAGGCTCAACTCACCTCTCGCAA
1 TTTGAAAAACAGAAATTG-AAAATACCTCAG-CGTGTGACCCGAGGCTCAACTCACCTCTCGCAA
*
26094478 CATGAGTTGA---TTTT
64 TATGAGTTGATTTTTTT
* *
26094492 TTTGAAAAACAGAAATTGAAAATACCTCAGTGTGTGACCCGATGCTCAACTCACCTCTCGCAATA
1 TTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATA
*
26094557 TGAGTTAATCTTTTTT
66 TGAGTTGAT-TTTTTT
* * * * *
26094573 CACATAAATTG-AAAATAGAAAATGAAAATATCTCAGCGTGTGACCTGATGCTCAACTCACCTCT
1 ----T---TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCT
*
26094637 TGCAATATGAGTTGATTTTTTT
59 CGCAATATGAGTTGATTTTTTT
26094659 GAAAAGTAGA
Statistics
Matches: 285, Mismatches: 23, Indels: 24
0.86 0.07 0.07
Matches are distributed among these distances:
77 69 0.24
78 72 0.25
80 57 0.20
81 6 0.02
82 9 0.03
85 1 0.00
86 6 0.02
87 62 0.22
88 3 0.01
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.30
Consensus pattern (80 bp):
TTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATA
TGAGTTGATTTTTTT
Found at i:26094463 original size:78 final size:77
Alignment explanation
Indices: 26094181--26094677 Score: 516
Period size: 77 Copynumber: 6.3 Consensus size: 77
26094171 TTATTCTTTA
* * * * * * * * * *
26094181 TTGAAAAAAAAAAATTGAAAATAGCTC-GGGATGCGACCCGAAGTTCAACTCACCTCTTGGATTA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCG-TGTGACCCGAGGCTCAACTCACCTCTCGCAATA
*
26094245 TGAGTTGA--TCT
65 TGAGTTGATTTTT
* * *
26094256 TTGAAAAAGCAGAAAATTGAAAATACCTCAGCATGTGACCTGAGGCTTAACTCACCTCTCGCAAT
1 TTGAAAAA-CAG-AAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAAT
26094321 ATGAGTTGATTTTTTTT
64 ATGAGTTGA---TTTTT
* *
26094338 TTGAAAAAAAGAAATTGAAAATACCTCAGCGTGTGACCCGAGCCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATAT
26094403 GAGTTGATTTTT
66 GAGTTGATTTTT
* * *
26094415 TTGAAAGACATAAATTGAAAAATACCTC-GACGTGTGACCCGAGGCTCAACTCACCTCTCGCAAC
1 TTGAAAAACAGAAATTG-AAAATACCTCAG-CGTGTGACCCGAGGCTCAACTCACCTCTCGCAAT
26094479 ATGAGTTGATTTTT
64 ATGAGTTGATTTTT
* *
26094493 TTGAAAAACAGAAATTGAAAATACCTCAGTGTGTGACCCGATGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATAT
*
26094558 GAGTTAATCTTTTT
66 GAGTTGA--TTTTT
* * * * * *
26094572 TCACATAAATTGAAAATAGAAAATGAAAATATCTCAGCGTGTGACCTGATGCTCAACTCACCTCT
1 T----T-GA---AAAACAGAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCT
*
26094637 TGCAATATGAGTTGATTTTT
58 CGCAATATGAGTTGATTTTT
** *
26094657 TTGAAAAGTAGAAATTAAAAA
1 TTGAAAAACAGAAATTGAAAA
26094678 ACAAAAATTG
Statistics
Matches: 359, Mismatches: 42, Indels: 40
0.81 0.10 0.09
Matches are distributed among these distances:
75 8 0.02
76 1 0.00
77 131 0.36
78 73 0.20
79 6 0.02
80 58 0.16
81 3 0.01
82 10 0.03
83 1 0.00
84 1 0.00
85 6 0.02
87 61 0.17
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (77 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTT
Found at i:26094723 original size:91 final size:88
Alignment explanation
Indices: 26094496--26094747 Score: 312
Period size: 87 Copynumber: 2.8 Consensus size: 88
26094486 GATTTTTTTG
* *
26094496 AAAAACAGAAATTGAAAATACCTCAGTGTGTGACCCGATGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAAAAATTGAAAATACCTCAGCGTGTGACCCGATGCTCAACTCACCTCTCGCAATATGAG
* * *
26094561 TTAATCTTTTTTCACATAAATTGA
66 TTGAT-TTTTTTAAAATAAATTGA
* * * * *
26094585 AAATA-GAAAA-TGAAAATATCTCAGCGTGTGACCTGATGCTCAACTCACCTCTTGCAATATGAG
1 AAAAACAAAAATTGAAAATACCTCAGCGTGTGACCCGATGCTCAACTCACCTCTCGCAATATGAG
26094648 TTGATTTTTTTGAAAAGTAGAAATT-A
66 TTGATTTTTTT-AAAA-T--AAATTGA
* * * *
26094674 AAAAACAAAAATTGAAAATACCTCGGCATGTGGCCCGAAGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAAAAATTGAAAATACCTCAGCGTGTGACCCGATGCTCAACTCACCTCTCGCAATATGAG
26094739 TTGATTTTT
66 TTGATTTTT
26094748 GAAAAACAGA
Statistics
Matches: 138, Mismatches: 19, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
86 6 0.04
87 55 0.40
88 4 0.03
89 9 0.07
90 9 0.07
91 55 0.40
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.29
Consensus pattern (88 bp):
AAAAACAAAAATTGAAAATACCTCAGCGTGTGACCCGATGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTTAAAATAAATTGA
Found at i:26105087 original size:46 final size:46
Alignment explanation
Indices: 26105020--26105192 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
26105010 TAACCCGCCC
26105020 ATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCT
1 ATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCT
* *
26105066 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT-T
1 ATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCATCT
* * * * *
26105115 -TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCC
1 ATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCT
** *
26105159 ATAAATGAACTCGGACTCAACTCAACGAGTTCGG
1 ATAAGCGAACTCGGACTCAACTCAACGAGCTCGG
26105193 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 61 0.57
47 27 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
ATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCT
Found at i:26105138 original size:93 final size:93
Alignment explanation
Indices: 26105025--26105196 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
26105015 CGCCCATAAG
* * * *
26105025 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCTATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
26105090 ACGAGCTCGGATGCCTAGTTACATTTCA
66 ACGAGCTCGGATGCCTAGTTACATTTCA
*
26105118 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
*
26105183 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
26105197 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATTTCA
Found at i:26109214 original size:17 final size:17
Alignment explanation
Indices: 26109192--26109349 Score: 92
Period size: 17 Copynumber: 9.1 Consensus size: 17
26109182 GATCCGATTG
26109192 AAACACGAAAATTTTGA
1 AAACACGAAAATTTTGA
26109209 AAACACGAAAATTTTG-
1 AAACACGAAAATTTTGA
** ***
26109225 AAACTTGATTTTTTTTG-
1 AAACACGA-AAATTTTGA
* *
26109242 AAACCCGAGAGATTTTGA
1 AAACACGA-AAATTTTGA
*
26109260 AAACACAAAAATTTTTGA
1 AAACACGAAAA-TTTTGA
*
26109278 AAAC-CTGAGAATCTTTG-
1 AAACAC-GAAAAT-TTTGA
* **
26109295 AAACCCGAGAAA-TTAAA
1 AAACACGA-AAATTTTGA
*
26109312 AAAAACGAAAATTTTTGA
1 AAACACGAAAA-TTTTGA
26109330 AAACACGAAAATTTTTGA
1 AAACACGAAAA-TTTTGA
26109348 AA
1 AA
26109350 CCTGAATTTT
Statistics
Matches: 107, Mismatches: 24, Indels: 19
0.71 0.16 0.13
Matches are distributed among these distances:
16 11 0.10
17 48 0.45
18 48 0.45
ACGTcount: A:0.47, C:0.12, G:0.13, T:0.28
Consensus pattern (17 bp):
AAACACGAAAATTTTGA
Found at i:26109324 original size:52 final size:53
Alignment explanation
Indices: 26109238--26109351 Score: 142
Period size: 52 Copynumber: 2.2 Consensus size: 53
26109228 CTTGATTTTT
* ** * *
26109238 TTTGAAACCCGAGAGATTTTGAAAACACAAAAATTTTTGAAAAC-CTGAGAATC
1 TTTGAAACCCGAGAGAATTAAAAAAAACAAAAATTTTTGAAAACAC-GAAAATC
* *
26109291 TTTGAAACCCGAGA-AATTAAAAAAAACGAAAATTTTTGAAAACACGAAAATT
1 TTTGAAACCCGAGAGAATTAAAAAAAACAAAAATTTTTGAAAACACGAAAATC
26109343 TTTGAAACC
1 TTTGAAACC
26109352 TGAATTTTTG
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
52 38 0.72
53 15 0.28
ACGTcount: A:0.47, C:0.14, G:0.13, T:0.25
Consensus pattern (53 bp):
TTTGAAACCCGAGAGAATTAAAAAAAACAAAAATTTTTGAAAACACGAAAATC
Found at i:26109337 original size:18 final size:18
Alignment explanation
Indices: 26109192--26109349 Score: 100
Period size: 18 Copynumber: 9.1 Consensus size: 18
26109182 GATCCGATTG
26109192 AAACACGAAAA-TTTTGA
1 AAACACGAAAATTTTTGA
26109209 AAACACGAAAA-TTTTG-
1 AAACACGAAAATTTTTGA
** ***
26109225 AAACTTGATTTTTTTTG-
1 AAACACGAAAATTTTTGA
* *
26109242 AAACCCGAGAGA-TTTTGA
1 AAACACGA-AAATTTTTGA
*
26109260 AAACACAAAAATTTTTGA
1 AAACACGAAAATTTTTGA
* *
26109278 AAAC-CTGAGAATCTTTG-
1 AAACAC-GAAAATTTTTGA
* **
26109295 AAACCCGAGAAA--TTAAA
1 AAACACGA-AAATTTTTGA
*
26109312 AAAAACGAAAATTTTTGA
1 AAACACGAAAATTTTTGA
26109330 AAACACGAAAATTTTTGA
1 AAACACGAAAATTTTTGA
26109348 AA
1 AA
26109350 CCTGAATTTT
Statistics
Matches: 107, Mismatches: 24, Indels: 19
0.71 0.16 0.13
Matches are distributed among these distances:
16 11 0.10
17 47 0.44
18 49 0.46
ACGTcount: A:0.47, C:0.12, G:0.13, T:0.28
Consensus pattern (18 bp):
AAACACGAAAATTTTTGA
Found at i:26110116 original size:36 final size:35
Alignment explanation
Indices: 26110039--26110128 Score: 112
Period size: 36 Copynumber: 2.6 Consensus size: 35
26110029 AACCAAACTA
*
26110039 AACCCAACTCACTAA-TTAAAAAAAAATACAAACC
1 AACCCAACTCACTAACTTAAAAAAAAACACAAACC
**
26110073 AACCCAACTCACTAACTTAAGAAACCCAACAC-AACC
1 AACCCAACTCACTAACTTAA-AAA-AAAACACAAACC
*
26110109 AACCCAACCCACTAACTTAA
1 AACCCAACTCACTAACTTAA
26110129 CATATCACCC
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
34 15 0.31
35 4 0.08
36 26 0.53
37 4 0.08
ACGTcount: A:0.51, C:0.34, G:0.01, T:0.13
Consensus pattern (35 bp):
AACCCAACTCACTAACTTAAAAAAAAACACAAACC
Found at i:26111002 original size:9 final size:9
Alignment explanation
Indices: 26110975--26111018 Score: 52
Period size: 9 Copynumber: 4.7 Consensus size: 9
26110965 CAAAATGCTA
26110975 TTTTTTATT
1 TTTTTTATT
**
26110984 TTTTAAATT
1 TTTTTTATT
26110993 TTTTTTATTT
1 TTTTTTA-TT
26111003 TTATTTTATT
1 TT-TTTTATT
26111013 TTTTTT
1 TTTTTT
26111019 GAAATTTTGA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
9 16 0.55
10 8 0.28
11 5 0.17
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (9 bp):
TTTTTTATT
Found at i:26111005 original size:17 final size:17
Alignment explanation
Indices: 26110975--26111026 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
26110965 CAAAATGCTA
26110975 TTTTTTATTTTTTAAATT
1 TTTTTTA-TTTTTAAATT
26110993 TTTTTTATTTTT--ATT
1 TTTTTTATTTTTAAATT
*
26111008 TTATTTT-TTTTGAAATT
1 TT-TTTTATTTTTAAATT
26111025 TT
1 TT
26111027 GAAAATTAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
15 9 0.30
16 4 0.13
17 10 0.33
18 7 0.23
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.79
Consensus pattern (17 bp):
TTTTTTATTTTTAAATT
Found at i:26113116 original size:43 final size:43
Alignment explanation
Indices: 26113060--26113185 Score: 164
Period size: 43 Copynumber: 2.9 Consensus size: 43
26113050 ATCATATGTC
* * * *
26113060 GATGCCATTGTCCCAGACAAGGTCTTACAGGAAATCA-ATTAAT
1 GATGCCAATGTCCCAGACATGGTCTTACACGAAATCACAAT-AT
*
26113103 GATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATAT
1 GATGCCAATGTCCCAGACATGGTCTTACACGAAATCACAATAT
* * *
26113146 GATGCCAATGTCTCAGACATGGTCTTACATGTAATCACAA
1 GATGCCAATGTCCCAGACATGGTCTTACACGAAATCACAA
26113186 CTCGATAACC
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
43 73 0.97
44 2 0.03
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.26
Consensus pattern (43 bp):
GATGCCAATGTCCCAGACATGGTCTTACACGAAATCACAATAT
Found at i:26113720 original size:28 final size:29
Alignment explanation
Indices: 26113656--26113720 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 29
26113646 TTTTTATTTA
* *
26113656 TTTCACAATTTAACCCCTCAATTTACACT
1 TTTCTCAATTTAACCCCTCAATTGACACT
* *
26113685 TTTCTCAATTTAATCCCT-AATTGACATT
1 TTTCTCAATTTAACCCCTCAATTGACACT
*
26113713 TTTGTCAA
1 TTTCTCAA
26113721 AAATCACTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
28 15 0.48
29 16 0.52
ACGTcount: A:0.29, C:0.25, G:0.03, T:0.43
Consensus pattern (29 bp):
TTTCTCAATTTAACCCCTCAATTGACACT
Found at i:26116466 original size:16 final size:14
Alignment explanation
Indices: 26116444--26116479 Score: 54
Period size: 16 Copynumber: 2.4 Consensus size: 14
26116434 ATCATCAAAC
26116444 TTTTTTTCTTCCTTT
1 TTTTTTTCTT-CTTT
26116459 TATTTTTTCTTCTTT
1 T-TTTTTTCTTCTTT
26116474 TTTTTT
1 TTTTTT
26116480 CGAATTTTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 5 0.25
15 6 0.30
16 9 0.45
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.83
Consensus pattern (14 bp):
TTTTTTTCTTCTTT
Found at i:26125624 original size:19 final size:19
Alignment explanation
Indices: 26125602--26125661 Score: 50
Period size: 19 Copynumber: 3.1 Consensus size: 19
26125592 TATCGTTGAA
26125602 AAATTATAAAAATTATATT
1 AAATTATAAAAATTATATT
* *
26125621 AAATTTTAACAAA-TAAATAT
1 AAATTATAA-AAATTATAT-T
* *
26125641 AAAATACTAAAATTTATATT
1 AAATTA-TAAAAATTATATT
26125661 A
1 A
26125662 CGACATTGTT
Statistics
Matches: 31, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
19 12 0.39
20 12 0.39
21 7 0.23
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.38
Consensus pattern (19 bp):
AAATTATAAAAATTATATT
Found at i:26126313 original size:72 final size:72
Alignment explanation
Indices: 26126221--26126367 Score: 285
Period size: 72 Copynumber: 2.0 Consensus size: 72
26126211 ACTAACAAAT
*
26126221 CATACCAAAACTGTCCACGGTCATTCCAAACAATAACCAGAGCTCATAAAGTATGTAATACCTCA
1 CATACCAAAACTATCCACGGTCATTCCAAACAATAACCAGAGCTCATAAAGTATGTAATACCTCA
26126286 TATTAAC
66 TATTAAC
26126293 CATACCAAAACTATCCACGGTCATTCCAAACAATAACCAGAGCTCATAAAGTATGTAATACCTCA
1 CATACCAAAACTATCCACGGTCATTCCAAACAATAACCAGAGCTCATAAAGTATGTAATACCTCA
26126358 TATTAAC
66 TATTAAC
26126365 CAT
1 CAT
26126368 TCTAAACACA
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 74 1.00
ACGTcount: A:0.41, C:0.27, G:0.09, T:0.24
Consensus pattern (72 bp):
CATACCAAAACTATCCACGGTCATTCCAAACAATAACCAGAGCTCATAAAGTATGTAATACCTCA
TATTAAC
Found at i:26126366 original size:35 final size:35
Alignment explanation
Indices: 26126254--26126366 Score: 88
Period size: 35 Copynumber: 3.2 Consensus size: 35
26126244 TTCCAAACAA
26126254 TAACCAGAGCTCATAAAGTATGTAATACCTCATAT
1 TAACCAGAGCTCATAAAGTATGTAATACCTCATAT
* * * * ** * *
26126289 TAACCATA-C-CA-AAACTATCCACGGTCATTCCAAACAA
1 TAACCAGAGCTCATAAAGTAT-----GTAATACCTCATAT
26126326 TAACCAGAGCTCATAAAGTATGTAATACCTCATAT
1 TAACCAGAGCTCATAAAGTATGTAATACCTCATAT
26126361 TAACCA
1 TAACCA
26126367 TTCTAAACAC
Statistics
Matches: 54, Mismatches: 16, Indels: 16
0.63 0.19 0.19
Matches are distributed among these distances:
32 6 0.11
33 2 0.04
34 1 0.02
35 21 0.39
37 15 0.28
38 1 0.02
39 2 0.04
40 6 0.11
ACGTcount: A:0.42, C:0.25, G:0.09, T:0.25
Consensus pattern (35 bp):
TAACCAGAGCTCATAAAGTATGTAATACCTCATAT
Found at i:26129321 original size:56 final size:57
Alignment explanation
Indices: 26129212--26129326 Score: 144
Period size: 56 Copynumber: 2.0 Consensus size: 57
26129202 ATATAACTTC
* * * *
26129212 ATTTAATAAATTTTTTTAGTGAAATCAAAATTCTTATTTATAAGTATGATAAAT-TT
1 ATTTAATAAAATATTTTAGTAAAATCAAAATTCTTATTTATAAATATGATAAATCTT
* * *
26129268 ATTTAATAAAATATTTTAGTAAAATTAAAATTCTTATTTTTAAAT-TTAGTAAATCTT
1 ATTTAATAAAATATTTTAGTAAAATCAAAATTCTTATTTATAAATATGA-TAAATCTT
26129325 AT
1 AT
26129327 AAATAATAAA
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
55 2 0.04
56 44 0.88
57 4 0.08
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.49
Consensus pattern (57 bp):
ATTTAATAAAATATTTTAGTAAAATCAAAATTCTTATTTATAAATATGATAAATCTT
Found at i:26140784 original size:44 final size:42
Alignment explanation
Indices: 26140734--26140839 Score: 124
Period size: 44 Copynumber: 2.5 Consensus size: 42
26140724 TGTGTTATCA
26140734 TGTAAGACCATGTCTGGGACGTTGGCATCG-ACTTATGATTTACG
1 TGTAAGACCATGTCTGGGACGTTGGCATCGTA-TT-TGATTT-CG
** * *
26140778 TGTAAGACCACATTTGGGATGTTGGCATCGTATTTGATTTCG
1 TGTAAGACCATGTCTGGGACGTTGGCATCGTATTTGATTTCG
* *
26140820 TGTAAGACCCTGTCTAGGAC
1 TGTAAGACCATGTCTGGGAC
26140840 AGAGGCATTG
Statistics
Matches: 51, Mismatches: 10, Indels: 4
0.78 0.15 0.06
Matches are distributed among these distances:
42 16 0.31
43 6 0.12
44 28 0.55
45 1 0.02
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACGTTGGCATCGTATTTGATTTCG
Found at i:26142683 original size:42 final size:42
Alignment explanation
Indices: 26142620--26142713 Score: 143
Period size: 42 Copynumber: 2.2 Consensus size: 42
26142610 AGCAGGGAAA
*
26142620 ACACGCCCGTGTGGCCAGCAGTGTGGCTCACACGGCCAAGAG
1 ACACGCCCGTATGGCCAGCAGTGTGGCTCACACGGCCAAGAG
* * *
26142662 ACACGCCTGTATGGCCGGCAGTGTGGCTTACACGGCCAAGAG
1 ACACGCCCGTATGGCCAGCAGTGTGGCTCACACGGCCAAGAG
*
26142704 ATACGCCCGT
1 ACACGCCCGT
26142714 GTCTTAGGCA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.21, C:0.32, G:0.32, T:0.15
Consensus pattern (42 bp):
ACACGCCCGTATGGCCAGCAGTGTGGCTCACACGGCCAAGAG
Found at i:26142724 original size:42 final size:42
Alignment explanation
Indices: 26142620--26142729 Score: 114
Period size: 42 Copynumber: 2.6 Consensus size: 42
26142610 AGCAGGGAAA
* *
26142620 ACACGCCCGTGTGGCCA-GCAGTGTGGCTCACACGGCCAAGAG
1 ACACGCCCGTATCG-CAGGCAGTGTGGCTCACACGGCCAAGAG
* * * *
26142662 ACACGCCTGTATGGCCGGCAGTGTGGCTTACACGGCCAAGAG
1 ACACGCCCGTATCGCAGGCAGTGTGGCTCACACGGCCAAGAG
* * **
26142704 ATACGCCCGTGTCTTAGGCAGTGTGG
1 ACACGCCCGTATCGCAGGCAGTGTGG
26142730 GCATTCGATG
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
41 1 0.02
42 55 0.98
ACGTcount: A:0.20, C:0.29, G:0.34, T:0.17
Consensus pattern (42 bp):
ACACGCCCGTATCGCAGGCAGTGTGGCTCACACGGCCAAGAG
Found at i:26143857 original size:33 final size:33
Alignment explanation
Indices: 26143820--26143907 Score: 133
Period size: 33 Copynumber: 2.7 Consensus size: 33
26143810 ACTCGTAGTG
*
26143820 CCATAACCTAGTTATGGTCTTATCATCAGATTT
1 CCATAACCCAGTTATGGTCTTATCATCAGATTT
* * *
26143853 CCATAGCCCAGCTATGGTCTTATGATCAGATTT
1 CCATAACCCAGTTATGGTCTTATCATCAGATTT
26143886 CCAT-ACCCAGTTATGGTCTTAT
1 CCATAACCCAGTTATGGTCTTAT
26143908 ATTTAATCAC
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
32 16 0.33
33 33 0.67
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (33 bp):
CCATAACCCAGTTATGGTCTTATCATCAGATTT
Found at i:26144398 original size:43 final size:43
Alignment explanation
Indices: 26144350--26144432 Score: 148
Period size: 43 Copynumber: 1.9 Consensus size: 43
26144340 AGTTATTCAT
26144350 TAGCACATATTTCAATTCTAATTCACTTCAAAATTTATACGTC
1 TAGCACATATTTCAATTCTAATTCACTTCAAAATTTATACGTC
* *
26144393 TAGCACATATTTCAATTCTAATTCGCTTCACAATTTATAC
1 TAGCACATATTTCAATTCTAATTCACTTCAAAATTTATAC
26144433 CCCTCAATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.34, C:0.22, G:0.05, T:0.40
Consensus pattern (43 bp):
TAGCACATATTTCAATTCTAATTCACTTCAAAATTTATACGTC
Found at i:26145347 original size:7 final size:7
Alignment explanation
Indices: 26145335--26145360 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
26145325 CATTTAACTT
26145335 ATAAATA
1 ATAAATA
26145342 ATAAATA
1 ATAAATA
26145349 ATAAATA
1 ATAAATA
26145356 ATAAA
1 ATAAA
26145361 ATTTTTGAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (7 bp):
ATAAATA
Found at i:26149227 original size:16 final size:16
Alignment explanation
Indices: 26149208--26149238 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26149198 CTTCTTCACT
26149208 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
26149224 TACTTACTTACTTAA
1 TACTCACTTACTTAA
26149239 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:26149244 original size:20 final size:20
Alignment explanation
Indices: 26149205--26149244 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
26149195 AAACTTCTTC
* *
26149205 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
26149225 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
26149245 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:26149568 original size:53 final size:54
Alignment explanation
Indices: 26149431--26149683 Score: 256
Period size: 55 Copynumber: 4.8 Consensus size: 54
26149421 ACACGGGTAC
* * * *
26149431 CTTACCATTTCCATGACTTGTCATGGTCTTACATGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * *
26149480 CTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * *
26149533 CTCACTAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAA
* * *
26149588 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* *
26149641 CCTTACCAATTACCATGCCTTGGCATGGTCTT--ATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
26149684 AAACCCTAAT
Statistics
Matches: 170, Mismatches: 23, Indels: 18
0.81 0.11 0.09
Matches are distributed among these distances:
49 37 0.22
50 1 0.01
52 2 0.01
53 58 0.34
54 10 0.06
55 60 0.35
56 2 0.01
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.36
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:26149621 original size:55 final size:55
Alignment explanation
Indices: 26149431--26149683 Score: 244
Period size: 53 Copynumber: 4.8 Consensus size: 55
26149421 ACACGGGTAC
* * * *
26149431 CTTACCATTTCCATGACTTGTCATGGTCTTACATGGTATCC-T---TT-T-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAA
* * *
26149480 CTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTAT-G-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAA
* * * *
26149533 CTCACTAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTATAGAAA
* * *
26149588 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCC-T-TAGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAA
* *
26149641 CCTTACCAATTACCATGCCTTGGCATGGTCTT--ATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
26149684 AAACCCTAAT
Statistics
Matches: 170, Mismatches: 23, Indels: 18
0.81 0.11 0.09
Matches are distributed among these distances:
49 37 0.22
50 1 0.01
52 2 0.01
53 60 0.35
54 11 0.06
55 57 0.34
56 2 0.01
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.36
Consensus pattern (55 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAA
Found at i:26149628 original size:108 final size:110
Alignment explanation
Indices: 26149476--26149673 Score: 303
Period size: 108 Copynumber: 1.8 Consensus size: 110
26149466 GTATCCTTTT
* * *
26149476 GAAACTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACT
1 GAAACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACC
*
26149539 AA-TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
65 AATTACCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
* * *
26149584 GAAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTTACCA
1 GAAACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCA
26149649 ATTACCATGCCTTGGCATGGTCTTA
66 ATTACCATGCCTTGGCATGGTCTTA
26149674 TGGTATCCTT
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
107 1 0.01
108 51 0.64
109 6 0.08
110 22 0.28
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.33
Consensus pattern (110 bp):
GAAACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCA
ATTACCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
Found at i:26164739 original size:130 final size:129
Alignment explanation
Indices: 26164500--26164887 Score: 463
Period size: 130 Copynumber: 3.0 Consensus size: 129
26164490 TAATTACTCA
* * * * * *
26164500 TTTAAAAATTCTTTAAGACAAAGGCAATACTCAGTGTTTGGCAATTCGAGAATCGTGCCCTATCG
1 TTTAAAAATTCTTTAAAACGAAGGTAATACTCGGTGTTTGGCAATTCGGGAATTGTGCCCTATCG
* * *
26164565 TGCTGGGTTGCGATTTCTCGTTTGTTGAAAACAATCGAACATTCCTTTGGGATTACACTCATACT
66 TGCTGGGTTGCGATTTCTCGTTTGTTGAAAACAAT-TAAAATTCCTTTGGGATTTCACTCATACT
*
26164630 TTTAAAAATTCTTTAAAACGAATGTAATACTCGGTGTTTGGCAATTCGGGAATTGTGCCCTATCG
1 TTTAAAAATTCTTTAAAACGAAGGTAATACTCGGTGTTTGGCAATTCGGGAATTGTGCCCTATCG
* * * * *
26164695 CGCTGGGTTGTGATTTCTCGTTTGTTTAAAACAATTAAAAATTCCTTTGGGTTTTCACTCATGCT
66 TGCTGGGTTGCGATTTCTCGTTTGTTGAAAACAATT-AAAATTCCTTTGGGATTTCACTCATACT
** ** * * * * *
26164760 TTTAAAAATTCTCCAAAACGAAGGTAATGTTCGATATTTGGAAATTCGGGGAATTATGCCCTATT
1 TTTAAAAATTCTTTAAAACGAAGGTAATACTCGGTGTTTGGCAATTC-GGGAATTGTGCCCTATC
* * * * *
26164825 GTGCTGGGTTGCGATCTC-CTGTTTGTTGAAAATAATCTAATATTCCTTTAGAATTTCACTCAT
65 GTGCTGGGTTGCGATTTCTC-GTTTGTTGAAAACAAT-TAAAATTCCTTTGGGATTTCACTCAT
26164888 GTTCTCCAAA
Statistics
Matches: 220, Mismatches: 34, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
130 154 0.70
131 65 0.30
132 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (129 bp):
TTTAAAAATTCTTTAAAACGAAGGTAATACTCGGTGTTTGGCAATTCGGGAATTGTGCCCTATCG
TGCTGGGTTGCGATTTCTCGTTTGTTGAAAACAATTAAAATTCCTTTGGGATTTCACTCATACT
Found at i:26164885 original size:131 final size:129
Alignment explanation
Indices: 26164534--26164975 Score: 446
Period size: 130 Copynumber: 3.4 Consensus size: 129
26164524 CAATACTCAG
* * *
26164534 TGTTTGGCAATTC-GAGAATCGTGCCCTATCGTGCTGGGTTGCGATTTCTCGTTTGTTGAAAACA
1 TGTTTGGAAATTCGGGGAATTGTGCCCTATCGTGCTGGGTTGCGATTTCTCGTTTGTTGAAAACA
* * * * * **
26164598 ATCGAACATTCCTTTGGGATTACACTCATACTTTTAAAAATTCTTTAAAACGAATGTAATACTCG
66 ATCTAAAATTCCTTTGGGATTTCACTCATGCTTTTAAAAATTC--TAAAACGAAGGTAATGTTCG
*
26164663 G
129 A
* * * *
26164664 TGTTTGGCAATTC-GGGAATTGTGCCCTATCGCGCTGGGTTGTGATTTCTCGTTTGTTTAAAACA
1 TGTTTGGAAATTCGGGGAATTGTGCCCTATCGTGCTGGGTTGCGATTTCTCGTTTGTTGAAAACA
*
26164728 AT-TAAAAATTCCTTTGGGTTTTCACTCATGCTTTTAAAAATTCTCCAAAACGAAGGTAATGTTC
66 ATCT-AAAATTCCTTTGGGATTTCACTCATGCTTTTAAAAATTCT--AAAACGAAGGTAATGTTC
26164792 GA
128 GA
* * * * *
26164794 TATTTGGAAATTCGGGGAATTATGCCCTATTGTGCTGGGTTGCGATCTC-CTGTTTGTTGAAAAT
1 TGTTTGGAAATTCGGGGAATTGTGCCCTATCGTGCTGGGTTGCGATTTCTC-GTTTGTTGAAAAC
* * * * ** * *
26164858 AATCTAATATTCCTTTAGAATTTCACTCATG-TTCTCCAAATTCTAAAA-TAAGGCAATGTTCGA
65 AATCTAAAATTCCTTTGGGATTTCACTCATGCTTTTAAAAATTCTAAAACGAAGGTAATGTTCGA
* * * * * * **
26164921 TGTCTAGAAATTCGAGGAGTCGTGCCCTATTGTGCTGGGTTTTGATTTTCTCGTT
1 TGTTTGGAAATTCGGGGAATTGTGCCCTATCGTGCTGGGTTGCGA-TTTCTCGTT
26164976 GGACTAAATA
Statistics
Matches: 262, Mismatches: 42, Indels: 18
0.81 0.13 0.06
Matches are distributed among these distances:
127 49 0.19
128 11 0.04
129 1 0.00
130 134 0.51
131 66 0.25
132 1 0.00
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38
Consensus pattern (129 bp):
TGTTTGGAAATTCGGGGAATTGTGCCCTATCGTGCTGGGTTGCGATTTCTCGTTTGTTGAAAACA
ATCTAAAATTCCTTTGGGATTTCACTCATGCTTTTAAAAATTCTAAAACGAAGGTAATGTTCGA
Found at i:26176720 original size:133 final size:133
Alignment explanation
Indices: 26176518--26176772 Score: 429
Period size: 133 Copynumber: 1.9 Consensus size: 133
26176508 GATCGAAGAC
* * *
26176518 GGTGAATCTAGTCTTCCTGAAGTCGCAGTGAAGCAGATTTAAGCCACCATCCTATCTCCCTAAAG
1 GGTGAATCTAGGCTTCCTGAAGTCGCAGTGAAGCAGATTTAAGCCACCACCCTATCTCCCTAAAA
* *
26176583 TTGTAGTGGAGTAGGCTGAAGATTGTAGATCTTGCCTCCTTGAAGTTGCAGTGGAGCGAATAAAA
66 TTGTAGTGGAGTAGGCCGAAGATTGTAGATCTTGCCTCCATGAAGTTGCAGTGGAGCGAATAAAA
26176648 AAT
131 AAT
* * *
26176651 GGTGAATCTTGGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCACCCTATCTCCTTAAAA
1 GGTGAATCTAGGCTTCCTGAAGTCGCAGTGAAGCAGATTTAAGCCACCACCCTATCTCCCTAAAA
*
26176716 TTGTAGTGGAGTAGGCCGAAGATTGTAGATCTTGTCTCCATGAAGTTGCAGTGGAGC
66 TTGTAGTGGAGTAGGCCGAAGATTGTAGATCTTGCCTCCATGAAGTTGCAGTGGAGC
26176773 ATATCGAAGT
Statistics
Matches: 113, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
133 113 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.28
Consensus pattern (133 bp):
GGTGAATCTAGGCTTCCTGAAGTCGCAGTGAAGCAGATTTAAGCCACCACCCTATCTCCCTAAAA
TTGTAGTGGAGTAGGCCGAAGATTGTAGATCTTGCCTCCATGAAGTTGCAGTGGAGCGAATAAAA
AAT
Found at i:26176838 original size:133 final size:131
Alignment explanation
Indices: 26176476--26176844 Score: 300
Period size: 133 Copynumber: 2.8 Consensus size: 131
26176466 CTGATTCTAC
* * * * * * *
26176476 AGATCTTGTCTCTC-TGAAGTTGCAGCGGAGCAGATCGAAGACGGTGAAT-CTAGTCTTCCTGAA
1 AGATCTTGCCTC-CATGAAGTTGCAGTGGAGCA-AT-AAAAAAGGTCAATCCTAG-CTTCCTAAA
** * * * * *
26176539 GTCGCAGTGAAGCAGATTTAAGCCACCATCCTATCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAG
62 GTTACAGTGAAGCAGATTGAAGCAACAATCCTATCTCCCTAAAATTGTAGTGGAGTAGGCCGAAG
26176604 ATTGT
127 ATTGT
* * * * *
26176609 AGATCTTGCCTCCTTGAAGTTGCAGTGGAGCGAATAAAAAATGGTGAATCTTGGCTTCCTGAAGT
1 AGATCTTGCCTCCATGAAGTTGCAGTGGAGC-AATAAAAAA-GGTCAATCCTAGCTTCCTAAAGT
* * * * * *
26176674 TGCAGTGAAGCAGATTTAAGCCACCACCCTATCTCCTTAAAATTGTAGTGGAGTAGGCCGAAGAT
64 TACAGTGAAGCAGATTGAAGCAACAATCCTATCTCCCTAAAATTGTAGTGGAGTAGGCCGAAGAT
26176739 TGT
129 TGT
* *** *
26176742 AGATCTTGTCTCCATGAAGTTGCAGTGGAGC-ATATCGAA-GTCACAATCCCTATC-TCTCTAAA
1 AGATCTTGCCTCCATGAAGTTGCAGTGGAGCAATAAAAAAGGT--CAAT-CCTAGCTTC-CTAAA
* *
26176804 GTTACAGTTG-AGCAGATTGGAGCAACAATTCCTATATCCCT
62 GTTACAG-TGAAGCAGATTGAAGCAACAA-TCCTATCTCCCT
26176845 GAAGATGCAG
Statistics
Matches: 196, Mismatches: 30, Indels: 20
0.80 0.12 0.08
Matches are distributed among these distances:
129 2 0.01
131 10 0.05
132 31 0.16
133 150 0.77
134 3 0.02
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (131 bp):
AGATCTTGCCTCCATGAAGTTGCAGTGGAGCAATAAAAAAGGTCAATCCTAGCTTCCTAAAGTTA
CAGTGAAGCAGATTGAAGCAACAATCCTATCTCCCTAAAATTGTAGTGGAGTAGGCCGAAGATTG
T
Found at i:26178946 original size:23 final size:25
Alignment explanation
Indices: 26178897--26178946 Score: 59
Period size: 26 Copynumber: 2.0 Consensus size: 25
26178887 TAATTTAAAA
* *
26178897 ATTATTATTTTTGAATGTTTCTTTAT
1 ATTATTACTTTTG-ATGTTTCTATAT
26178923 ATTATTACTTTTG-TGTTT-TATAT
1 ATTATTACTTTTGATGTTTCTATAT
26178946 A
1 A
26178947 GTATCTTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
23 5 0.23
24 5 0.23
26 12 0.55
ACGTcount: A:0.24, C:0.04, G:0.08, T:0.64
Consensus pattern (25 bp):
ATTATTACTTTTGATGTTTCTATAT
Found at i:26179888 original size:130 final size:130
Alignment explanation
Indices: 26179655--26180042 Score: 490
Period size: 130 Copynumber: 3.0 Consensus size: 130
26179645 TAATTACTCA
* *
26179655 TTTAAAATTTCTTTAAAATGAAGGCAATACTCGATGTTTGGCAATTTGGGAATCGTGCCCTATCG
1 TTTAAAAATTCTTTAAAACGAAGGCAATACTCGATGTTTGGCAATTTGGGAATCGTGCCCTATCG
** * *
26179720 TGCTGGATTGCGATTTCTTGTTTGTTCAAAAAAATCGAATATTCCTTTGGGATTACACTCATATT
66 TGCTGGATTGCGATTTCTCATTTGTTCAAAAAAATCGAATATTCCTTTGGGATTTCACTCATACT
* * *
26179785 TTTAAAAATTCTTTAAAACGAATGCAATACTCGGTGTTTGGAAATTTGGGAATCGTGCCCTATCG
1 TTTAAAAATTCTTTAAAACGAAGGCAATACTCGATGTTTGGCAATTTGGGAATCGTGCCCTATCG
* * *
26179850 TGCTGGATTGCGATTTCTCATTTGTTCAAAACAATCGAATATTCCTTTGGGTTTTCACTCATGCT
66 TGCTGGATTGCGATTTCTCATTTGTTCAAAAAAATCGAATATTCCTTTGGGATTTCACTCATACT
* * ** * * ** * * *
26179915 TTAAAAAACTCTCCAAAACGTAGGTAATGTTCGATGTTTGGCAATTCAGGGAATTGTGCCCTATT
1 TTTAAAAATTCTTTAAAACGAAGGCAATACTCGATGTTTGGCAATT-TGGGAATCGTGCCCTATC
* * * * * *
26179980 GTGCTGGGTTGCGATCTC-CTATTTGTTCAAAATAATTGAATATTCCTTTAGAATTTCACTCAT
65 GTGCTGGATTGCGATTTCTC-ATTTGTTCAAAAAAATCGAATATTCCTTTGGGATTTCACTCAT
26180043 GTTCTCAAAA
Statistics
Matches: 223, Mismatches: 33, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
130 154 0.69
131 69 0.31
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (130 bp):
TTTAAAAATTCTTTAAAACGAAGGCAATACTCGATGTTTGGCAATTTGGGAATCGTGCCCTATCG
TGCTGGATTGCGATTTCTCATTTGTTCAAAAAAATCGAATATTCCTTTGGGATTTCACTCATACT
Found at i:26191651 original size:19 final size:20
Alignment explanation
Indices: 26191627--26191669 Score: 70
Period size: 19 Copynumber: 2.2 Consensus size: 20
26191617 ACCCGGATCA
*
26191627 ATCAAAGCAATAACTCTAG-
1 ATCAAACCAATAACTCTAGT
26191646 ATCAAACCAATAACTCTAGT
1 ATCAAACCAATAACTCTAGT
26191666 ATCA
1 ATCA
26191670 TGGAGAGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 18 0.82
20 4 0.18
ACGTcount: A:0.47, C:0.23, G:0.07, T:0.23
Consensus pattern (20 bp):
ATCAAACCAATAACTCTAGT
Found at i:26194756 original size:55 final size:53
Alignment explanation
Indices: 26194635--26194821 Score: 175
Period size: 55 Copynumber: 3.5 Consensus size: 53
26194625 TGCCATGTCC
26194635 GACATGGTCTTACATG-GTATCCTTGCCTTATGAACTCACCAATGCCATGCCTT
1 GACATGGTCTTACATGAG-ATCCTTGCCTTATGAACTCACCAATGCCATGCCTT
* * * * *
26194688 GGCATGGTCTTACATGAGA-CCTTTGCCTTATAGAAACTTATCAATTCCATGGCTT
1 GACATGGTCTTACATGAGATCC-TTGCCTTAT-G-AACTCACCAATGCCATGCCTT
* * * *
26194743 GACATGGCCTTACATGATATCCTTGCCTTA-GAAACCTTACCAATTGCTATGCCTT
1 GACATGGTCTTACATGAGATCCTTGCCTTATG-AA-CTCACCAA-TGCCATGCCTT
* *
26194798 GGCATTGTCTTACATG-GTATCCTT
1 GACATGGTCTTACATGAG-ATCCTT
26194822 AAACCCTAAT
Statistics
Matches: 110, Mismatches: 16, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
52 2 0.02
53 29 0.26
54 9 0.08
55 68 0.62
56 2 0.02
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.34
Consensus pattern (53 bp):
GACATGGTCTTACATGAGATCCTTGCCTTATGAACTCACCAATGCCATGCCTT
Found at i:26202723 original size:25 final size:25
Alignment explanation
Indices: 26202695--26202744 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
26202685 GCTTATCATC
* *
26202695 ATTCAGGTAGGAGGAGCTTACCGTT
1 ATTCAGCTAGAAGGAGCTTACCGTT
*
26202720 ATTCAGCTCGAAGGAGCTTACCGTT
1 ATTCAGCTAGAAGGAGCTTACCGTT
26202745 TATAGCTTGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (25 bp):
ATTCAGCTAGAAGGAGCTTACCGTT
Found at i:26207037 original size:79 final size:81
Alignment explanation
Indices: 26206895--26207080 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 81
26206885 TACTCGTTCA
* **
26206895 AATGCCTTCGGGACATAGCCCG-GTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 AATGCCTTCGGGACTTAGCCCGAAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
* *
26206959 TTTAGTAAC-TCGCACC
66 TATAGTAACTTAGCA-C
**
26206975 AATGCCTTCGGG-CTTAGCCCGAAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACTTAGCCCGAAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
26207037 ATATGGTCACTTAGCAC
65 ATATAGTAACTTAGCAC
*
26207054 AAAGCCTTCGGGACTTAGCCCGGAAAT
1 AATGCCTTCGGGACTTAGCCC-GAAAT
26207081 CATTCGAATA
Statistics
Matches: 91, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
78 3 0.03
79 58 0.64
80 25 0.27
81 5 0.05
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGAAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:26207077 original size:40 final size:40
Alignment explanation
Indices: 26206874--26207077 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
26206864 CGGAATTTAA
** *
26206874 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
26206914 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
26206954 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
26206993 CC-GAAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
26207033 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
26207073 CCGGA
1 CCGGA
26207078 AATCATTCGA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 4 0.03
39 30 0.22
40 91 0.65
41 14 0.10
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:26208313 original size:55 final size:56
Alignment explanation
Indices: 26208212--26208327 Score: 225
Period size: 55 Copynumber: 2.1 Consensus size: 56
26208202 TATTAGTTTA
26208212 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
26208268 TTGCCCATGCTTCTTATTTTATT-TTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
26208323 TTGCC
1 TTGCC
26208328 TATCATCCCT
Statistics
Matches: 60, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
55 37 0.62
56 23 0.38
ACGTcount: A:0.22, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:26214830 original size:40 final size:40
Alignment explanation
Indices: 26214758--26214956 Score: 184
Period size: 39 Copynumber: 5.1 Consensus size: 40
26214748 CGGAATTTAA
**
26214758 CCGGATATAGCT-ACTCGTTCAAA-GCCTTCGGGACTTAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
26214797 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTA-A
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
26214836 CCGGATTTAGTAACTCGCACCAATGCCTTC-GGCCTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
26214875 CC-GAAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
26214915 CCGGATATGGTCACTTAGC-CAAA-GCC-T-GGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
26214952 CCGGA
1 CCGGA
26214957 ATCATTCGAA
Statistics
Matches: 133, Mismatches: 19, Indels: 18
0.78 0.11 0.11
Matches are distributed among these distances:
37 10 0.08
38 13 0.10
39 74 0.56
40 30 0.23
41 6 0.05
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:26216128 original size:50 final size:53
Alignment explanation
Indices: 26216071--26216173 Score: 176
Period size: 50 Copynumber: 2.0 Consensus size: 53
26216061 TAGTTTATTG
26216071 CCATGCTTCTTATTTTATTCTTCCA-TAACA-AACATGTTTC-TGACATGTTT
1 CCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTTT
*
26216121 CCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTTT
1 CCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTTT
26216174 TGCCATCATC
Statistics
Matches: 49, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
50 24 0.49
51 5 0.10
52 10 0.20
53 10 0.20
ACGTcount: A:0.24, C:0.21, G:0.08, T:0.47
Consensus pattern (53 bp):
CCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTTT
Found at i:26224326 original size:27 final size:27
Alignment explanation
Indices: 26224267--26224443 Score: 189
Period size: 27 Copynumber: 6.6 Consensus size: 27
26224257 TCAATTGTAC
26224267 AGCACTAAGTGTGCG-ATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
26224293 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
26224319 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
26224347 GGCACTAAGTG-GCGAGTTTGCACTATGT
1 AGCACTAAGTGTGCGA-ATTG-ACTATGT
* *
26224375 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
26224402 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
26224429 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26224444 GACTCAAATA
Statistics
Matches: 129, Mismatches: 16, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
26 18 0.14
27 88 0.68
28 19 0.15
29 4 0.03
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:26224380 original size:82 final size:80
Alignment explanation
Indices: 26224268--26224422 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 80
26224258 CAATTGTACA
*
26224268 GCACTAAGTGTGCGATTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTGT
1 GCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTGT
26224332 GCGAATTGACCATGCG
65 GCGAATTGACCATGCG
** *
26224348 GCACTAAGTG-GCGAGTTTGCACTATGTAGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGT
1 GCACTAAGTGTGCGA--TTG-ACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGT
*
26224412 GTGCGAGTTGA
63 GTGCGAATTGA
26224423 TTATATAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
79 4 0.06
80 10 0.15
81 3 0.05
82 48 0.73
83 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (80 bp):
GCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGTG
CGAATTGACCATGCG
Found at i:26224434 original size:82 final size:80
Alignment explanation
Indices: 26224264--26224443 Score: 211
Period size: 82 Copynumber: 2.2 Consensus size: 80
26224254 GATTCAATTG
*
26224264 TACAGCACTAAGTGTGCGATTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAG
1 TACAGCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAAG
26224329 TGTGCGAATTGACCA
66 TGTGCGAATTGACCA
* * ** *
26224344 TGCGGCACTAAGTG-GCGAGTTTGCACTATGTAGCACTAAGTGTGCGATTTGATTATG-TAGCAC
1 TACAGCACTAAGTGTGCGA--TTG-ACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCAC
* **
26224407 TAAGTGTGCGAGTTGATTA
62 TAAGTGTGCGAATTGACCA
* *
26224426 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
26224444 GACTCAAATA
Statistics
Matches: 82, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
79 4 0.05
80 12 0.15
81 4 0.05
82 59 0.72
83 3 0.04
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (80 bp):
TACAGCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAAG
TGTGCGAATTGACCA
Found at i:26232247 original size:27 final size:27
Alignment explanation
Indices: 26232216--26232393 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
26232206 TAAATTGTAC
26232216 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
26232243 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26232269 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
26232297 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
26232325 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26232352 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
26232379 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26232394 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:26232330 original size:82 final size:81
Alignment explanation
Indices: 26232217--26232372 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
26232207 AAATTGTACA
* *
26232217 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
26232281 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
26232298 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
26232363 TGCGAGTTGA
65 TGCGAATTGA
26232373 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:26232384 original size:82 final size:81
Alignment explanation
Indices: 26232213--26232393 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
26232203 GATTAAATTG
* *
26232213 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
26232278 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
26232294 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
26232358 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
26232376 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
26232394 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:26240365 original size:27 final size:27
Alignment explanation
Indices: 26240334--26240511 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
26240324 TAAATTGTAC
26240334 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
26240361 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26240387 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
26240415 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
26240443 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26240470 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
26240497 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26240512 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:26240448 original size:82 final size:81
Alignment explanation
Indices: 26240335--26240490 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
26240325 AAATTGTACA
* *
26240335 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
26240399 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
26240416 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
26240481 TGCGAGTTGA
65 TGCGAATTGA
26240491 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:26240502 original size:82 final size:81
Alignment explanation
Indices: 26240331--26240511 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
26240321 GATTAAATTG
* *
26240331 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
26240396 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
26240412 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
26240476 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
26240494 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
26240512 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:26246921 original size:40 final size:39
Alignment explanation
Indices: 26246822--26247038 Score: 253
Period size: 40 Copynumber: 5.5 Consensus size: 39
26246812 AAGCCAAGTA
* * *
26246822 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAATG
*
26246860 CCTTC-GGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCA-CAATG
26246899 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCAC-AATG
* *
26246939 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAGATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA-ATG
* * *
26246979 CCTTCGGGACTTAGCTCGGA-ACTAGTCACTAGCGCAAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAATG
*
26247020 CCTTCGGGACTTAACCCGG
1 CCTTCGGGACTTAGCCCGG
26247039 TTATCATCCA
Statistics
Matches: 156, Mismatches: 14, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
37 6 0.04
38 21 0.13
39 12 0.08
40 92 0.59
41 20 0.13
42 5 0.03
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAATG
Found at i:26248208 original size:16 final size:15
Alignment explanation
Indices: 26248187--26248217 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
26248177 GCTAACAAAT
26248187 AAATAAAATAAAAAAA
1 AAATAAAA-AAAAAAA
26248203 AAATAAAAAAAAAAA
1 AAATAAAAAAAAAAA
26248218 CATGCATGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (15 bp):
AAATAAAAAAAAAAA
Found at i:26248217 original size:12 final size:11
Alignment explanation
Indices: 26248191--26248216 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
26248181 ACAAATAAAT
26248191 AAAATAAAAAA
1 AAAATAAAAAA
26248202 AAAATAAAAAA
1 AAAATAAAAAA
26248213 AAAA
1 AAAA
26248217 ACATGCATGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08
Consensus pattern (11 bp):
AAAATAAAAAA
Found at i:26256186 original size:12 final size:12
Alignment explanation
Indices: 26256169--26256201 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
26256159 AAAAACATAC
26256169 TATATATAAATA
1 TATATATAAATA
*
26256181 TATATATACATA
1 TATATATAAATA
26256193 TATA-ATAAA
1 TATATATAAA
26256202 AACATTCACT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 4 0.21
12 15 0.79
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (12 bp):
TATATATAAATA
Found at i:26256288 original size:31 final size:30
Alignment explanation
Indices: 26256249--26256319 Score: 90
Period size: 31 Copynumber: 2.3 Consensus size: 30
26256239 ATAATATTAA
*
26256249 AATATATAAAA-AAAGTAAATATAACATAAT
1 AATATATAAAATAAAGTAAATA-AAAATAAT
*
26256279 AATAATATAAAATAAAGTAATTAAAAATAAT
1 AAT-ATATAAAATAAAGTAAATAAAAATAAT
*
26256310 ACTATATAAA
1 AATATATAAA
26256320 TATATATACA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
30 10 0.28
31 17 0.47
32 9 0.25
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.28
Consensus pattern (30 bp):
AATATATAAAATAAAGTAAATAAAAATAAT
Found at i:26256363 original size:3 final size:3
Alignment explanation
Indices: 26256349--26256429 Score: 58
Period size: 3 Copynumber: 26.3 Consensus size: 3
26256339 AAACATTCAC
* * *
26256349 TAA TAT TAA TAA TAA TAA TAC TAGA -AA TAA TAA TAA CTAG TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA -TAA TAA TAA
* **
26256395 TAA TACA TTAA GAA TAA TAA T-A TGT TAA TAA TAA T
1 TAA TA-A -TAA TAA TAA TAA TAA TAA TAA TAA TAA T
26256430 GAATTAGTGA
Statistics
Matches: 61, Mismatches: 11, Indels: 12
0.73 0.13 0.14
Matches are distributed among these distances:
2 3 0.05
3 52 0.85
4 4 0.07
5 2 0.03
ACGTcount: A:0.57, C:0.04, G:0.05, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:26256422 original size:17 final size:17
Alignment explanation
Indices: 26256353--26256416 Score: 57
Period size: 16 Copynumber: 3.9 Consensus size: 17
26256343 ATTCACTAAT
*
26256353 ATTAATAATAATAATAC
1 ATTAAGAATAATAATAC
26256370 --T-AGAAATAATAATA-
1 ATTAAG-AATAATAATAC
*
26256384 ACT-AGTAATAATAATAC
1 ATTAAG-AATAATAATAC
26256401 ATTAAGAATAATAATA
1 ATTAAGAATAATAATA
26256417 TGTTAATAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
14 1 0.03
15 11 0.28
16 13 0.33
17 12 0.31
18 2 0.05
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.31
Consensus pattern (17 bp):
ATTAAGAATAATAATAC
Found at i:26256424 original size:31 final size:31
Alignment explanation
Indices: 26256358--26256429 Score: 85
Period size: 31 Copynumber: 2.3 Consensus size: 31
26256348 CTAATATTAA
*
26256358 TAATAATAATACTAGAAATAATAATAACTAG
1 TAATAATAATACTAGAAAGAATAATAACTAG
**
26256389 TAATAATAATAC-ATTAAGAATAATAA-TATG
1 TAATAATAATACTAGAAAGAATAATAACTA-G
26256419 TTAATAATAAT
1 -TAATAATAAT
26256430 GAATTAGTGA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
29 2 0.06
30 12 0.33
31 22 0.61
ACGTcount: A:0.57, C:0.04, G:0.06, T:0.33
Consensus pattern (31 bp):
TAATAATAATACTAGAAAGAATAATAACTAG
Found at i:26256424 original size:139 final size:143
Alignment explanation
Indices: 26256074--26256384 Score: 426
Period size: 145 Copynumber: 2.2 Consensus size: 143
26256064 ATAATGATGA
* * * *
26256074 TAAT-GATAATAATACTAGCAATAATAATAATGAA-ATA-CAAAAAAGTAAATATGACATAATAA
1 TAATAGATAATAATAATAGAAATAATAATAA--AATATATAAAAAAAGTAAATATAACATAATAA
*
26256136 TAATATTAAAATACAGTAATTAAAAAAACATACTATATATAAATATATATATACATATATAATAA
64 TAATATTAAAATAAAGTAATTAAAAAAACATAC-ATATATAAATATATATATACATATATAATAA
26256201 AAACATTCACTAATAT
128 AAACATTCACTAATAT
** *
26256217 TAATATGATAATAATAATAGTTATAATATTAAAATATATAAAAAAAGTAAATATAACATAATAAT
1 TAATA-GATAATAATAATAGAAATAATAATAAAATATATAAAAAAAGTAAATATAACATAATAAT
*
26256282 AATA-TAAAATAAAGTAATTAAAAATA-ATAC-TATAT-AA-ATATATATACATATATAAT-AAA
65 AATATTAAAATAAAGTAATTAAAAAAACATACATATATAAATATATATATACATATATAATAAAA
26256341 ACATTCACTAATAT
130 ACATTCACTAATAT
*
26256355 TAATA-ATAATAATACTAGAAATAATAATAA
1 TAATAGATAATAATAATAGAAATAATAATAA
26256385 CTAGTAATAA
Statistics
Matches: 152, Mismatches: 12, Indels: 15
0.85 0.07 0.08
Matches are distributed among these distances:
136 21 0.14
138 22 0.14
139 19 0.12
140 2 0.01
141 5 0.03
143 10 0.07
144 23 0.15
145 50 0.33
ACGTcount: A:0.59, C:0.06, G:0.04, T:0.32
Consensus pattern (143 bp):
TAATAGATAATAATAATAGAAATAATAATAAAATATATAAAAAAAGTAAATATAACATAATAATA
ATATTAAAATAAAGTAATTAAAAAAACATACATATATAAATATATATATACATATATAATAAAAA
CATTCACTAATAT
Found at i:26261338 original size:14 final size:14
Alignment explanation
Indices: 26261301--26261339 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 14
26261291 ATATATTAGT
26261301 TTTTATTTGTTATTA
1 TTTTATTT-TTATTA
26261316 TTATT-TTTTTATTA
1 TT-TTATTTTTATTA
26261330 TTTTATTTTT
1 TTTTATTTTT
26261340 CCTTTTTAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
13 2 0.09
14 13 0.59
15 5 0.23
16 2 0.09
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (14 bp):
TTTTATTTTTATTA
Found at i:26266528 original size:15 final size:15
Alignment explanation
Indices: 26266499--26266542 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
26266489 TCACACTGAT
26266499 AATAT-TTAAATATAA
1 AATATATTAAA-ATAA
*
26266514 AATATATTATAATAA
1 AATATATTAAAATAA
*
26266529 ATTATATTAAAATA
1 AATATATTAAAATA
26266543 TTTTATTTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 21 0.84
16 4 0.16
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
AATATATTAAAATAA
Found at i:26270258 original size:18 final size:18
Alignment explanation
Indices: 26270217--26270260 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
26270207 AAGACTTATT
* *
26270217 ATTTGAATTTATTTCCTG
1 ATTTAAATTTATTTCCTA
26270235 ATTTAAATTTATTTCC-A
1 ATTTAAATTTATTTCCTA
26270252 ATATTAAAT
1 AT-TTAAAT
26270261 AATTTTTTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 2 0.09
18 21 0.91
ACGTcount: A:0.34, C:0.09, G:0.05, T:0.52
Consensus pattern (18 bp):
ATTTAAATTTATTTCCTA
Found at i:26281399 original size:17 final size:17
Alignment explanation
Indices: 26281377--26281415 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
26281367 ACTACCAAGT
26281377 TAAGGACATCAAAATGA
1 TAAGGACATCAAAATGA
26281394 TAAGGACATCAAAATGA
1 TAAGGACATCAAAATGA
26281411 TAAGG
1 TAAGG
26281416 GCCTCTACTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.51, C:0.10, G:0.21, T:0.18
Consensus pattern (17 bp):
TAAGGACATCAAAATGA
Found at i:26288331 original size:13 final size:13
Alignment explanation
Indices: 26288310--26288349 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
26288300 CAAGTAATCG
*
26288310 CACACGGGCGTTT
1 CACACGGGCGTGT
*
26288323 CACATGGGCGTGT
1 CACACGGGCGTGT
*
26288336 CACACGGGTGTGT
1 CACACGGGCGTGT
26288349 C
1 C
26288350 CTTGCCGAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.15, C:0.28, G:0.35, T:0.23
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:26295292 original size:63 final size:64
Alignment explanation
Indices: 26295080--26295293 Score: 180
Period size: 67 Copynumber: 3.2 Consensus size: 64
26295070 GATGTATACA
* * * *
26295080 ATGTGTACAAGAGAGCTACGAGACATTATGAGGTAGCTAGGTCGCAT-AGGTGATACTATGTGTA
1 ATGTATACAAGAGAGCTACGAG--A-TA-GAAGTAGCTAAGTCACATGA-GTGATACTATGTGTA
26295144 CACC
61 CACC
* * ** * * * * * *
26295148 ATGTATACAAGAGAGCTACGAGATAGATGTAGCTAGGTTGCATGTGTGGTTCCAGGTGAAGGACA
1 ATGTATACAAGAGAGCTACGAGATAGAAGTAGCTAAGTCACATGAGTGATACTA--TG-TGTACA
26295213 CC
63 CC
* * *
26295215 ATGTAAACAAGAGAGCTATGAGATA-AAGTGGCTAAGTCACATGAGTGATACTATGTGTACACC
1 ATGTATACAAGAGAGCTACGAGATAGAAGTAGCTAAGTCACATGAGTGATACTATGTGTACACC
*
26295278 ATGTGTACAAGAGAGC
1 ATGTATACAAGAGAGC
26295294 CAAAATTATG
Statistics
Matches: 118, Mismatches: 24, Indels: 13
0.76 0.15 0.08
Matches are distributed among these distances:
63 20 0.17
64 24 0.20
65 2 0.02
66 22 0.19
67 29 0.25
68 21 0.18
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.24
Consensus pattern (64 bp):
ATGTATACAAGAGAGCTACGAGATAGAAGTAGCTAAGTCACATGAGTGATACTATGTGTACACC
Found at i:26302149 original size:30 final size:30
Alignment explanation
Indices: 26302113--26302174 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
26302103 AGCATGAGAT
26302113 TGAATGATGTATGGAAAGAAATGCTTGATA
1 TGAATGATGTATGGAAAGAAATGCTTGATA
* *
26302143 TGAATGATGTTTGGAAAGAAATGTTTGATA
1 TGAATGATGTATGGAAAGAAATGCTTGATA
26302173 TG
1 TG
26302175 CTTTTGACAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.37, C:0.02, G:0.27, T:0.34
Consensus pattern (30 bp):
TGAATGATGTATGGAAAGAAATGCTTGATA
Found at i:26314927 original size:24 final size:24
Alignment explanation
Indices: 26314892--26315067 Score: 208
Period size: 24 Copynumber: 7.0 Consensus size: 24
26314882 ACTTAGCACC
26314892 ATGCCATGGACTTATTTCACTTAG
1 ATGCCATGGACTTATTTCACTTAG
*
26314916 ATACCATGGACTTATTTCACTTAG
1 ATGCCATGGACTTATTTCACTTAG
* *
26314940 ATGCCATGGACTTATTTCATTTATCAC
1 ATGCCATGGACTTATTTCA-CT-T-AG
*
26314967 ATTGCCATGGGCTTATTTCACTTAG
1 A-TGCCATGGACTTATTTCACTTAG
*
26314992 ATGCCATGGTCTTATTTCACTTAG
1 ATGCCATGGACTTATTTCACTTAG
* *
26315016 CATATTGTCATAGACTTATTTCACTTAG
1 ---A-TGCCATGGACTTATTTCACTTAG
*
26315044 ATGCCATGGTCTTATTTCACTTAG
1 ATGCCATGGACTTATTTCACTTAG
26315068 CACAATTTCA
Statistics
Matches: 130, Mismatches: 14, Indels: 16
0.81 0.09 0.10
Matches are distributed among these distances:
24 83 0.64
25 4 0.03
26 2 0.02
27 4 0.03
28 37 0.28
ACGTcount: A:0.24, C:0.20, G:0.15, T:0.40
Consensus pattern (24 bp):
ATGCCATGGACTTATTTCACTTAG
Found at i:26315049 original size:76 final size:75
Alignment explanation
Indices: 26314891--26315067 Score: 216
Period size: 76 Copynumber: 2.3 Consensus size: 75
26314881 CACTTAGCAC
*
26314891 CATGCCATGGACTTATTTCACTTAGATACCATGGACTTATTTCACTTAGATGCCATGGACTTATT
1 CATGCCATGGACTTATTTCACTTAGATACCATGGACTTATTTCACTTAGATGCCATAGACTTATT
*
26314956 TCATTTATCA
66 TCATCTATCA
* * * *
26314966 CATTGCCATGGGCTTATTTCACTTAGATGCCATGGTCTTATTTCACTTAGCATATTGTCATAGAC
1 CA-TGCCATGGACTTATTTCACTTAGATACCATGGACTTATTTCACTTAG---A-TGCCATAGAC
26315031 TTATTTCA-CT-T-A
61 TTATTTCATCTATCA
* *
26315043 GATGCCATGGTCTTATTTCACTTAG
1 CATGCCATGGACTTATTTCACTTAG
26315068 CACAATTTCA
Statistics
Matches: 89, Mismatches: 8, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
75 2 0.02
76 66 0.74
77 2 0.02
78 1 0.01
79 2 0.02
80 16 0.18
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.40
Consensus pattern (75 bp):
CATGCCATGGACTTATTTCACTTAGATACCATGGACTTATTTCACTTAGATGCCATAGACTTATT
TCATCTATCA
Found at i:26315068 original size:52 final size:52
Alignment explanation
Indices: 26314892--26315069 Score: 256
Period size: 52 Copynumber: 3.5 Consensus size: 52
26314882 ACTTAGCACC
26314892 ATGCCATGGACTTATTTCACTTAG-ATA---CCATGGACTTATTTCACTTAG
1 ATGCCATGGACTTATTTCACTTAGCATATTGCCATGGACTTATTTCACTTAG
* * * *
26314940 ATGCCATGGACTTATTTCATTTATCACATTGCCATGGGCTTATTTCACTTAG
1 ATGCCATGGACTTATTTCACTTAGCATATTGCCATGGACTTATTTCACTTAG
* * *
26314992 ATGCCATGGTCTTATTTCACTTAGCATATTGTCATAGACTTATTTCACTTAG
1 ATGCCATGGACTTATTTCACTTAGCATATTGCCATGGACTTATTTCACTTAG
*
26315044 ATGCCATGGTCTTATTTCACTTAGCA
1 ATGCCATGGACTTATTTCACTTAGCA
26315070 CAATTTCATA
Statistics
Matches: 115, Mismatches: 11, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
48 22 0.19
49 2 0.02
52 91 0.79
ACGTcount: A:0.25, C:0.21, G:0.15, T:0.40
Consensus pattern (52 bp):
ATGCCATGGACTTATTTCACTTAGCATATTGCCATGGACTTATTTCACTTAG
Found at i:26321282 original size:14 final size:15
Alignment explanation
Indices: 26321263--26321292 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
26321253 ATTAACCAAA
26321263 AATATTCT-TCCGCC
1 AATATTCTATCCGCC
26321277 AATATTCTATCCGCC
1 AATATTCTATCCGCC
26321292 A
1 A
26321293 CTAGTCTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.27, C:0.33, G:0.07, T:0.33
Consensus pattern (15 bp):
AATATTCTATCCGCC
Found at i:26321873 original size:37 final size:37
Alignment explanation
Indices: 26321823--26321901 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
26321813 TTATTACGAA
* * *
26321823 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
26321860 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
26321897 GTCTT
1 GTCTT
26321902 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:26322146 original size:49 final size:47
Alignment explanation
Indices: 26322020--26322343 Score: 569
Period size: 47 Copynumber: 6.8 Consensus size: 47
26322010 CCCTTCGGGA
* * *
26322020 CTTATCACATTTATACACTTTCACATTCCATCACGTTGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATT-CATCACATCGGCCATTAGGC
26322067 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26322114 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26322163 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26322212 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26322259 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26322306 CTTATCACATATATACACTTTCACATTCATCACATCGG
1 CTTATCACATATATACACTTTCACATTCATCACATCGG
26322344 ATCCTAAATC
Statistics
Matches: 271, Mismatches: 3, Indels: 6
0.97 0.01 0.02
Matches are distributed among these distances:
46 9 0.03
47 166 0.61
49 96 0.35
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26326277 original size:40 final size:40
Alignment explanation
Indices: 26326245--26326591 Score: 560
Period size: 40 Copynumber: 8.8 Consensus size: 40
26326235 CCAGCATGAT
* * * *
26326245 TGCTCTTCGAGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
26326285 TGCTCTTCGGGGTTTAGCAC-GATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
26326324 TGCTCCTC-GGACTTAG-CC-GATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
26326361 TGCTCCTCGGGACTTAGCCC-GATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
26326400 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
26326440 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
26326480 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
26326520 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
26326560 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
26326592 CTCAATTCTC
Statistics
Matches: 288, Mismatches: 16, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
37 28 0.10
38 14 0.05
39 63 0.22
40 183 0.64
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:26327877 original size:36 final size:37
Alignment explanation
Indices: 26327805--26327882 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
26327795 TTATTACGAA
* *
26327805 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
*
26327842 GTCTTACCCGGACAAAATC-CCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
26327878 GTCTT
1 GTCTT
26327883 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
Found at i:26328176 original size:49 final size:48
Alignment explanation
Indices: 26328002--26328324 Score: 562
Period size: 49 Copynumber: 6.8 Consensus size: 48
26327992 CCTCTCGGGA
* * * *
26328002 CTTATCAC-ATTTATACACTTTCACATCCATCACGTTGGCCATTAGGC
1 CTTATCACTATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26328049 CTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACTATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26328096 CTTATCACTATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACTATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26328144 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC-TATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26328193 CTTATCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC-TATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26328242 CTTATCACTATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACTATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26328290 CTTATCAC-ATATATACACTTTCACATTCATCACAT
1 CTTATCACTATATATACACTTTCACATTCATCACAT
26328325 AGAATCCTAA
Statistics
Matches: 268, Mismatches: 6, Indels: 4
0.96 0.02 0.01
Matches are distributed among these distances:
47 78 0.29
48 94 0.35
49 96 0.36
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (48 bp):
CTTATCACTATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26328200 original size:97 final size:95
Alignment explanation
Indices: 26328002--26328324 Score: 558
Period size: 97 Copynumber: 3.4 Consensus size: 95
26327992 CCTCTCGGGA
* * * *
26328002 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCATTAGGCCTTATCAC-ATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACTATATATACA
26328066 CTTTCACATTCATCACATCGGCCATTAGGC
66 CTTTCACATTCATCACATCGGCCATTAGGC
26328096 CTTATCACTATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
1 CTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-TATATATA
26328161 CACTTTCACATTCATCACATCGGCCATTAGGC
64 CACTTTCACATTCATCACATCGGCCATTAGGC
*
26328193 CTTATCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGCCTTATCACTATATATA
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACTATATATA
26328258 CACTTTCACATTCATCACATCGGCCATTAGGC
64 CACTTTCACATTCATCACATCGGCCATTAGGC
26328290 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
26328325 AGAATCCTAA
Statistics
Matches: 219, Mismatches: 6, Indels: 7
0.94 0.03 0.03
Matches are distributed among these distances:
94 8 0.04
95 69 0.32
97 95 0.43
98 47 0.21
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (95 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACTATATATACA
CTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26328275 original size:146 final size:144
Alignment explanation
Indices: 26328002--26328324 Score: 564
Period size: 146 Copynumber: 2.3 Consensus size: 144
26327992 CCTCTCGGGA
* * *
26328002 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
26328065 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACTATATATACACTTTCACATTCATCAC
66 ACTTCCACATTCATCACATCGGCCATTAGGCCTTATCACTATATATACACTTTCACATTCATCAC
26328130 ATCGGCCATTAGGC
131 ATCGGCCATTAGGC
26328144 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
26328209 ACACTTCCACATTCATCACATCGGCCATTAGGCCTTATCACTATATATACACTTTCACATTCATC
64 ACACTTCCACATTCATCACATCGGCCATTAGGCCTTATCACTATATATACACTTTCACATTCATC
26328274 ACATCGGCCATTAGGC
129 ACATCGGCCATTAGGC
26328290 CTTATCAC--ATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATATACACTTTCACATTCATCACAT
26328325 AGAATCCTAA
Statistics
Matches: 173, Mismatches: 4, Indels: 6
0.95 0.02 0.03
Matches are distributed among these distances:
142 10 0.06
143 1 0.01
144 68 0.39
146 94 0.54
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (144 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTCCACATTCATCACATCGGCCATTAGGCCTTATCACTATATATACACTTTCACATTCATCAC
ATCGGCCATTAGGC
Found at i:26340651 original size:33 final size:33
Alignment explanation
Indices: 26340609--26340675 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
26340599 AAACACACAC
26340609 AAAGTAAGATTTCAAAAGCTTAATAAGCCATAT
1 AAAGTAAGATTTCAAAAGCTTAATAAGCCATAT
26340642 AAAGTAAGATTTCAAAAGCTTAATAAGCCATAT
1 AAAGTAAGATTTCAAAAGCTTAATAAGCCATAT
26340675 A
1 A
26340676 CAAATAAACT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.49, C:0.12, G:0.12, T:0.27
Consensus pattern (33 bp):
AAAGTAAGATTTCAAAAGCTTAATAAGCCATAT
Found at i:26341064 original size:43 final size:42
Alignment explanation
Indices: 26340998--26341158 Score: 175
Period size: 43 Copynumber: 3.8 Consensus size: 42
26340988 AGCTCGTACA
* * * *
26340998 ATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAATATTG
1 ATGCCAACATCCCAGACATGGTCTTACACGAAATCAAATA-CG
*
26341041 ATGCC-ACTATCCCAGACAGGGTCTTACACGAAATCAAATACG
1 ATGCCAAC-ATCCCAGACATGGTCTTACACGAAATCAAATACG
* *
26341083 ATGCCAACGT-CCAGACATGGTCTTACACAAAAATCATAAGT-CG
1 ATGCCAACATCCCAGACATGGTCTTACAC-GAAATCA-AA-TACG
* *
26341126 ATGCCAACATCCTAGACATGGTCTTACATGAAA
1 ATGCCAACATCCCAGACATGGTCTTACACGAAA
26341159 ACACATATCG
Statistics
Matches: 100, Mismatches: 12, Indels: 12
0.81 0.10 0.10
Matches are distributed among these distances:
41 17 0.17
42 15 0.15
43 51 0.51
44 17 0.17
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.23
Consensus pattern (42 bp):
ATGCCAACATCCCAGACATGGTCTTACACGAAATCAAATACG
Found at i:26341143 original size:85 final size:85
Alignment explanation
Indices: 26340998--26341158 Score: 202
Period size: 85 Copynumber: 1.9 Consensus size: 85
26340988 AGCTCGTACA
*** *
26340998 ATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAATATTGATGCCACTATCCCAGACAGGGT
1 ATGCCAACGTCCCAGACATGGTCTTACAAAAAATCAAATATCGATGCCACTATCCCAGACAGGGT
26341063 CTTACACGAAATCAAATACG
66 CTTACACGAAATCAAATACG
* * *
26341083 ATGCCAACGT-CCAGACATGGTCTTACACAAAAATCATAA-GTCGATGCCAAC-ATCCTAGACAT
1 ATGCCAACGTCCCAGACATGGTCTTACA-AAAAATCA-AATATCGATGCC-ACTATCCCAGACAG
*
26341145 GGTCTTACATGAAA
63 GGTCTTACACGAAA
26341159 ACACATATCG
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
84 17 0.26
85 44 0.68
86 4 0.06
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.23
Consensus pattern (85 bp):
ATGCCAACGTCCCAGACATGGTCTTACAAAAAATCAAATATCGATGCCACTATCCCAGACAGGGT
CTTACACGAAATCAAATACG
Found at i:26342687 original size:41 final size:41
Alignment explanation
Indices: 26342575--26342687 Score: 127
Period size: 41 Copynumber: 2.7 Consensus size: 41
26342565 CACTATACCA
* * * *
26342575 ATGCCATATCCCATATATGGTCTTACATGGGATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACA-CGAATATCATATCG
* * *
26342617 ATGCCAATAGCCTAGCTATGGTCTTACACGAATATCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAATATCATATCG
* *
26342659 ATGTCATATCCCAGATTTGGTCTTACACG
1 ATGCCATATCCCAGATATGGTCTTACACG
26342688 TAATCTCAAA
Statistics
Matches: 58, Mismatches: 12, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
41 20 0.34
42 20 0.34
43 18 0.31
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACACGAATATCATATCG
Found at i:26350213 original size:43 final size:42
Alignment explanation
Indices: 26350138--26350247 Score: 134
Period size: 43 Copynumber: 2.6 Consensus size: 42
26350128 ATACCAATGT
* * *
26350138 CATATCCCAGATATGGTCTTACATGGGATCTCATATCGATGC
1 CATAGCCCAGATATGGTCTTACACGAGATCTCATATCGATGC
*
26350180 CAATAGCCCAGCTATGGTCTTACACGA-AGTCTCATATCGATGC
1 C-ATAGCCCAGATATGGTCTTACACGAGA-TCTCATATCGATGC
*
26350223 CATATCCC-GAATATGGTCTTACACG
1 CATAGCCCAG-ATATGGTCTTACACG
26350248 TAATCTTAAC
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
41 1 0.02
42 22 0.37
43 36 0.61
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.28
Consensus pattern (42 bp):
CATAGCCCAGATATGGTCTTACACGAGATCTCATATCGATGC
Found at i:26353085 original size:18 final size:18
Alignment explanation
Indices: 26353045--26353097 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
26353035 TTGGCCCATT
* *
26353045 ACAGTAACATTAAACAGT
1 ACAGTAACAGTAAACAGC
* *
26353063 GCAGTAACAGTAAATAGC
1 ACAGTAACAGTAAACAGC
*
26353081 ACAGTAATAGTAAACAG
1 ACAGTAACAGTAAACAG
26353098 TATGCAAGTC
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (18 bp):
ACAGTAACAGTAAACAGC
Found at i:26353471 original size:27 final size:27
Alignment explanation
Indices: 26353420--26353581 Score: 189
Period size: 27 Copynumber: 6.0 Consensus size: 27
26353410 ACAAAGGGGT
* * * * *
26353420 AAAATAGTCATCTTACCATAAAAGGGT
1 AAAACAGTCATTTTACCACATAAGGGC
* * *
26353447 AAAATAATCATTTTATCACATAAGGGC
1 AAAACAGTCATTTTACCACATAAGGGC
*
26353474 AAAACAGTCATTTTACCACATACGGGC
1 AAAACAGTCATTTTACCACATAAGGGC
* *
26353501 AAAACAGCCATTTTACCTCATAAGGGC
1 AAAACAGTCATTTTACCACATAAGGGC
*
26353528 AAAACAGTCATTTTACCTCATAAGGGC
1 AAAACAGTCATTTTACCACATAAGGGC
* * *
26353555 AAAATAGTCATTTCACTACATAAGGGC
1 AAAACAGTCATTTTACCACATAAGGGC
26353582 TGTAGAAGGC
Statistics
Matches: 117, Mismatches: 18, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 117 1.00
ACGTcount: A:0.40, C:0.20, G:0.14, T:0.25
Consensus pattern (27 bp):
AAAACAGTCATTTTACCACATAAGGGC
Found at i:26354745 original size:17 final size:17
Alignment explanation
Indices: 26354654--26354776 Score: 80
Period size: 17 Copynumber: 7.6 Consensus size: 17
26354644 TTTATTATCG
26354654 TTATTATTATT-C-ATA
1 TTATTATTATTACTATA
* *
26354669 TTATTATTATTA-TGTT
1 TTATTATTATTACTATA
**
26354685 TTACCATTTATTA-T-TA
1 TTATTA-TTATTACTATA
26354701 TTATTATTATTAC--TA
1 TTATTATTATTACTATA
* * *
26354716 CTACTACTATTACTATA
1 TTATTATTATTACTATA
* *
26354733 TTGTTATTATTACTATC
1 TTATTATTATTACTATA
*
26354750 TTATTATCATTACTATA
1 TTATTATTATTACTATA
* *
26354767 CTATTTTTAT
1 TTATTATTAT
26354777 CGATTACTCT
Statistics
Matches: 81, Mismatches: 21, Indels: 10
0.72 0.19 0.09
Matches are distributed among these distances:
15 29 0.36
16 10 0.12
17 42 0.52
ACGTcount: A:0.30, C:0.11, G:0.02, T:0.58
Consensus pattern (17 bp):
TTATTATTATTACTATA
Found at i:26354756 original size:3 final size:3
Alignment explanation
Indices: 26354575--26354744 Score: 87
Period size: 3 Copynumber: 55.7 Consensus size: 3
26354565 TAATTTAATC
* * *
26354575 TAT TAT TAT TATT TAT TA- TAG TAC TAT TAT TAT CT-T CTAT TAT CAT
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT -TAT -TAT TAT TAT
* * ** **
26354621 TAC TAT TAT TAT TCT TGC TAT TATT TAT TAT CGT TAT TAT TAT TCA-
1 TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT T-AT
* * * *
26354667 TAT TAT TAT TAT TAT GTTT TAC CATT TAT TAT TAT TAT TAT TAT TAC
1 TAT TAT TAT TAT TAT -TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT
* * * * *
26354714 TAC TAC TAC TAT TAC TA- TAT TGT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
26354745 CTATCTTATT
Statistics
Matches: 131, Mismatches: 26, Indels: 20
0.74 0.15 0.11
Matches are distributed among these distances:
2 5 0.04
3 114 0.87
4 12 0.09
ACGTcount: A:0.29, C:0.09, G:0.03, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:26354784 original size:21 final size:22
Alignment explanation
Indices: 26354743--26354784 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
26354733 TTGTTATTAT
26354743 TACTATCTTATTATCATTACTA
1 TACTATCTTATTATCATTACTA
26354765 TACTAT-TT-TTATCGATTACT
1 TACTATCTTATTATC-ATTACT
26354785 CTTCAAATAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.26
21 8 0.42
22 6 0.32
ACGTcount: A:0.29, C:0.17, G:0.02, T:0.52
Consensus pattern (22 bp):
TACTATCTTATTATCATTACTA
Found at i:26360884 original size:48 final size:48
Alignment explanation
Indices: 26360826--26361167 Score: 506
Period size: 48 Copynumber: 7.0 Consensus size: 48
26360816 TTGATGCATA
26360826 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* *
26360874 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
* * *
26360924 AGATATGTATATGTGGTAAAGCTGAATGGTTAATGTGAAATATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG--A-A-ATATGTATG
26360976 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* * *
26361024 AGATATGCATATGTGGTAAAGCCAAATGG-TCAATGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATG
*
26361074 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
26361122 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
26361168 GGCGATGTGT
Statistics
Matches: 271, Mismatches: 15, Indels: 16
0.90 0.05 0.05
Matches are distributed among these distances:
47 1 0.00
48 131 0.48
49 7 0.03
50 83 0.31
51 3 0.01
52 46 0.17
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:26361101 original size:150 final size:146
Alignment explanation
Indices: 26360826--26361167 Score: 560
Period size: 150 Copynumber: 2.3 Consensus size: 146
26360816 TTGATGCATA
*
26360826 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGT
* * *
26360891 AAAGCCGAATGGCTAATGCGAAATATATATATGAGATATGTATATGTGGTAAAGCTGAATGGTTA
66 AAAGCCAAATGGCTAATGCGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
26360956 ATGTGAAATATATATATATG
131 ATGTG--A-A-ATATATATG
26360976 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGT
*
26361041 AAAGCCAAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCT
66 AAAGCCAAATGGCT-AATGCGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCT
* *
26361105 AGTGTGAAATATGTATG
130 AATGTGAAATATATATG
*
26361122 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
26361168 GGCGATGTGT
Statistics
Matches: 183, Mismatches: 8, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
146 53 0.29
147 1 0.01
148 1 0.01
149 1 0.01
150 127 0.69
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.32
Consensus pattern (146 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGT
AAAGCCAAATGGCTAATGCGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
ATGTGAAATATATATG
Found at i:26361112 original size:98 final size:98
Alignment explanation
Indices: 26360826--26361164 Score: 531
Period size: 98 Copynumber: 3.4 Consensus size: 98
26360816 TTGATGCATA
*
26360826 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATATGTATATGTG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTG
* *
26360889 GTAAAGCCGAATGGCTAATGCGAAATATATATATG
66 GTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
* *
26360924 AGATATGTATATGTGGTAAAGCTGAATGGTTAATGTGAAATATATATATATGAGATATGTATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATATATATGAGATATGTATATG
26360989 TGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
64 TGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* *
26361024 AGATATGCATATGTGGTAAAGCCAAATGG-TCAATGTGAAATATATATATGAGATATGTATATGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTGAAATATATATATGAGATATGTATATGT
*
26361088 GGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
65 GGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
26361122 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
26361165 GTAGGCGATG
Statistics
Matches: 223, Mismatches: 12, Indels: 12
0.90 0.05 0.05
Matches are distributed among these distances:
98 131 0.59
99 4 0.02
100 41 0.18
101 3 0.01
102 44 0.20
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.32
Consensus pattern (98 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTG
GTAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:26361422 original size:37 final size:37
Alignment explanation
Indices: 26361314--26361422 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
26361304 GGAAATATAT
*
26361314 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
26361351 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
26361388 TCCGGGTAAGACCCGATAAATTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
26361423 CATCTGAGCT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:26371828 original size:49 final size:49
Alignment explanation
Indices: 26371774--26371872 Score: 153
Period size: 49 Copynumber: 2.0 Consensus size: 49
26371764 CAAGAAACAC
*
26371774 ATTTATCAAACATATCCCATCCAAAAAGTGACCAACATTTCTGAAAGAA
1 ATTTATCAAACATATCCCATCCAAAAAGTGACAAACATTTCTGAAAGAA
* * * *
26371823 ATTTATCAAACATATCCCTTCCCAAAATTGACAAATATTTCTGAAAGAA
1 ATTTATCAAACATATCCCATCCAAAAAGTGACAAACATTTCTGAAAGAA
26371872 A
1 A
26371873 GTCGGATACA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.44, C:0.21, G:0.07, T:0.27
Consensus pattern (49 bp):
ATTTATCAAACATATCCCATCCAAAAAGTGACAAACATTTCTGAAAGAA
Found at i:26374534 original size:18 final size:20
Alignment explanation
Indices: 26374489--26374525 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 20
26374479 AGAAGAATTA
*
26374489 TTATTCTAAGAAAATAAAAT
1 TTATACTAAGAAAATAAAAT
26374509 TTATACTAA-AAAATAAA
1 TTATACTAAGAAAATAAA
26374526 TTCTAACTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 8 0.50
20 8 0.50
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.32
Consensus pattern (20 bp):
TTATACTAAGAAAATAAAAT
Found at i:26376018 original size:19 final size:19
Alignment explanation
Indices: 26375994--26376037 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
26375984 TAAAAGCAAC
26375994 ACAACATCAACCCAAATAA
1 ACAACATCAACCCAAATAA
* **
26376013 ACAACATGATTCCAAATAA
1 ACAACATCAACCCAAATAA
26376032 ACAACA
1 ACAACA
26376038 AAAATAATAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.57, C:0.27, G:0.02, T:0.14
Consensus pattern (19 bp):
ACAACATCAACCCAAATAA
Found at i:26378794 original size:90 final size:91
Alignment explanation
Indices: 26378694--26378865 Score: 276
Period size: 91 Copynumber: 1.9 Consensus size: 91
26378684 TAGGTATAGC
* *
26378694 AGCATAAATTAAAC-AAAAAAAAGTATGTTAAACTA-CATTTTAAACTTTAAAGTTAGTTAATTG
1 AGCATAAATTAAACAAAAAAAAAGTATGTTAAACTATC-GTTTAAAATTTAAAGTTAGTTAATTG
*
26378757 CAGCCTAAATTAATATAATAGTACAAT
65 AAGCCTAAATTAATATAATAGTACAAT
* *
26378784 AGCATAAATTAAACAAAAAAAAAGTTTGTTAAGCTATCGTTTAAAATTTAAAGTTAGTTAATTGA
1 AGCATAAATTAAACAAAAAAAAAGTATGTTAAACTATCGTTTAAAATTTAAAGTTAGTTAATTGA
26378849 AGCCTAAATTAATATAA
66 AGCCTAAATTAATATAA
26378866 ATATATAATA
Statistics
Matches: 75, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
90 14 0.19
91 60 0.80
92 1 0.01
ACGTcount: A:0.49, C:0.09, G:0.10, T:0.33
Consensus pattern (91 bp):
AGCATAAATTAAACAAAAAAAAAGTATGTTAAACTATCGTTTAAAATTTAAAGTTAGTTAATTGA
AGCCTAAATTAATATAATAGTACAAT
Found at i:26378890 original size:91 final size:90
Alignment explanation
Indices: 26378697--26378890 Score: 243
Period size: 91 Copynumber: 2.1 Consensus size: 90
26378687 GTATAGCAGC
* * * *
26378697 ATAAATTAAAC-AAAAAAAAGTATGTTAAACTACATTTTAAACTTTAAAGTTAGTTAATTGCAGC
1 ATAAAGTAAACAAAAAAAAAGTATGTTAAACTACAGTTTAAAATTTAAAGTTAGTTAATTGAAGC
26378761 CTAAATTAATATAATAGTACAATAG
66 CTAAATTAATATAATAGTACAATAG
* * *
26378786 CATAAATTAAACAAAAAAAAAGTTTGTTAAGCTATC-GTTTAAAATTTAAAGTTAGTTAATTGAA
1 -ATAAAGTAAACAAAAAAAAAGTATGTTAAACTA-CAGTTTAAAATTTAAAGTTAGTTAATTGAA
*
26378850 GCCTAAATTAATATAAATA-TATAATAG
64 GCCTAAATTAATAT-AATAGTACAATAG
26378877 -TACAAGTACAACAA
1 ATA-AAGTA-AACAA
26378891 CATAAATTAA
Statistics
Matches: 92, Mismatches: 7, Indels: 9
0.85 0.06 0.08
Matches are distributed among these distances:
89 2 0.02
90 15 0.16
91 70 0.76
92 5 0.05
ACGTcount: A:0.50, C:0.09, G:0.09, T:0.32
Consensus pattern (90 bp):
ATAAAGTAAACAAAAAAAAAGTATGTTAAACTACAGTTTAAAATTTAAAGTTAGTTAATTGAAGC
CTAAATTAATATAATAGTACAATAG
Found at i:26379128 original size:17 final size:17
Alignment explanation
Indices: 26379106--26379138 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
26379096 TTTTCTCTAT
26379106 TAATATTACATTATTAC
1 TAATATTACATTATTAC
26379123 TAATATTACATTATTA
1 TAATATTACATTATTA
26379139 GTTTGGGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.48
Consensus pattern (17 bp):
TAATATTACATTATTAC
Found at i:26379810 original size:23 final size:21
Alignment explanation
Indices: 26379782--26379824 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 21
26379772 GGATTTGGGT
26379782 TTGGGCAAATAAGTCTTTGGGGC
1 TTGGGCAAATAAG-C-TTGGGGC
*
26379805 TTGGGCAGATAAGCTTGGGG
1 TTGGGCAAATAAGCTTGGGG
26379825 AAGTAGGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 6 0.32
22 1 0.05
23 12 0.63
ACGTcount: A:0.21, C:0.12, G:0.40, T:0.28
Consensus pattern (21 bp):
TTGGGCAAATAAGCTTGGGGC
Found at i:26390750 original size:22 final size:20
Alignment explanation
Indices: 26390714--26390782 Score: 79
Period size: 22 Copynumber: 3.4 Consensus size: 20
26390704 GCGCCTTGAG
26390714 AAAAAAA-AATCAAAAAATT
1 AAAAAAATAATCAAAAAATT
*
26390733 AAAAAAATCAATCAAAAAAATC
1 AAAAAAAT-AATC-AAAAAATT
26390755 AAAAAAATTAAT-AAAAAATT
1 AAAAAAA-TAATCAAAAAATT
26390775 AATAAAAA
1 AA-AAAAA
26390783 GAGAAAAAGA
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
19 7 0.16
20 9 0.21
21 9 0.21
22 17 0.40
23 1 0.02
ACGTcount: A:0.77, C:0.06, G:0.00, T:0.17
Consensus pattern (20 bp):
AAAAAAATAATCAAAAAATT
Found at i:26392354 original size:44 final size:43
Alignment explanation
Indices: 26392306--26392756 Score: 168
Period size: 44 Copynumber: 10.2 Consensus size: 43
26392296 AGCCATCAGC
*
26392306 CTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTATAGT
1 CTTATCTCTCTGAGGTAGCAAG-GAGCAGATTGAAGATTATAGT
* * * * *
26392350 CTTAT-TTTCCTAAGGTAGCAAGGAAGCAAAGTAAAGATTATAGAT
1 CTTATCTCT-CTGAGGTAGCAAGG-AGCAGATTGAAGATTATAG-T
* * * * * *** *
26392395 CTTATCTCCCT-AAGTAGTAGTGGAGCAGATCGAAGATGGCGAAT
1 CTTATCTCTCTGAGGTAGCA-AGGAGCAGATTGAAGAT-TATAGT
* * * * ** ** *
26392439 CTTATCT-TTTCGATGTAGCAGGGGAGCATATTTTAG-CCACCAGT
1 CTTATCTCTCT-GAGGTAGCA-AGGAGCAGATTGAAGATTA-TAGT
* *
26392483 CTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGT
1 CTTATCTCTCTGAGGTAGCAAG-GAGCAGATTGAAGATTATAGT
*
26392527 CTTATCT-TCCTGAGGTAGCAAGGAAGCAGACTGAAGATTATAGAT
1 CTTATCTCT-CTGAGGTAGCAAGG-AGCAGATTGAAGATTATAG-T
* * * * * * *
26392572 CTTATCTCCCT-AAGTAG-TAGTGAAACAGATCGAAGA-TAGCGAAT
1 CTTATCTCTCTGAGGTAGCAAG-G-AGCAGATTGAAGATTA--TAGT
* * * ** ** * *
26392616 CTTATCT-TCCAGAGGTAACAGGGGAGCAGATTTTAG-CCACCAGC
1 CTTATCTCT-CTGAGGTAGCA-AGGAGCAGATTGAAGATTA-TAGT
* * *
26392660 CTTATCTCTTTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGT
1 CTTATCTCTCTGAGGTAGCAAG-GAGCAGATTGAAGATTATAGT
* * *
26392704 CTTATCT-TCCTGAGGTAGCAAGGAAGCAGACTGATGATTTTAGAT
1 CTTATCTCT-CTGAGGTAGCAAGG-AGCAGATTGAAGATTATAG-T
26392749 CTTATCTC
1 CTTATCTC
26392757 CCTAAGTAGT
Statistics
Matches: 290, Mismatches: 86, Indels: 60
0.67 0.20 0.14
Matches are distributed among these distances:
43 14 0.05
44 210 0.72
45 63 0.22
46 2 0.01
47 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.29
Consensus pattern (43 bp):
CTTATCTCTCTGAGGTAGCAAGGAGCAGATTGAAGATTATAGT
Found at i:26392444 original size:177 final size:177
Alignment explanation
Indices: 26392046--26393314 Score: 1616
Period size: 177 Copynumber: 7.2 Consensus size: 177
26392036 TCAGACTTTG
* * * * * *
26392046 TCTCCCTAAATAGTAGTGGAGCAAATCGGAAG-CGACAAATCTTATC-TTCCTAAGGTAGCAGGG
1 TCTCCCTAAGTAGTAGTGGAGCAGATC-GAAGATGGCGAATCTTATCTTTCC-GAGGTAGCAGGG
* ** * *
26392109 GAGCAGATTTTAGCTATTAGCCTTATCTTTCTGAGGTAGCAAGAGAGTAGGTTGAAGA-TGTAGT
64 GAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGT
* * * ** * *
26392173 CTTATCTTCCTAAGATAGTAATAAAGCAGACTGAGGATTGTAGATCTTA
129 CTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTATAGATCTTA
* * ** * ** *
26392222 TCTCCCTAAGCAGTAGTGGAACAGATAAAATATGGCGAATCTTATCTTTCCGAGGTATTAAGGGA
1 TCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTCCGAGGTAGCAGGGGA
* * *
26392287 GTAGATTTTAGCCATCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTATAGTCT
66 GCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTCT
* * * * *
26392352 TATTTTCCTAAGGTAGCAAGGAAGCAAAGTAAAGATTATAGATCTTA
131 TATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTATAGATCTTA
* *
26392399 TCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTTCGATGTAGCAGGGGA
1 TCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTCCGAGGTAGCAGGGGA
* *
26392464 GCATATTTTAGCCACCAGTCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTCT
66 GCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTCT
26392529 TATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTATAGATCTTA
131 TATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTATAGATCTTA
* * * *
26392576 TCTCCCTAAGTAGTAGTGAAACAGATCGAAGATAGCGAATCTTATC-TTCCAGAGGTAACAGGGG
1 TCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTCC-GAGGTAGCAGGGG
*
26392640 AGCAGATTTTAGCCACCAGCCTTATCTCTTTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTC
65 AGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTC
* *
26392705 TTATCTTCCTGAGGTAGCAAGGAAGCAGACTGATGATTTTAGATCTTA
130 TTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTATAGATCTTA
* * * * * *
26392753 TCTCCCTAAGTAGTAGTGAAACAGATCAAAGATAGCGAATCTTATCTTCCCGAGGTAGCAGGGAA
1 TCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTCCGAGGTAGCAGGGGA
* * *
26392818 GCAGATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGGAAGAGAACAGGTTGAAGATTGTAGTCT
66 GCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTCT
* * * *
26392883 TATCTTCCTGAGGTAACAAGGAAGCAAACTGAATATTGTAGATCTTA
131 TATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTATAGATCTTA
*
26392930 TCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCGAGGTAGCAGGGGA
1 TCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTCCGAGGTAGCAGGGGA
* * * *
26392995 GCAGATTTTAGCCACTAGCCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTAAAGATTGTAGTCA
66 GCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTCT
* *
26393060 TATCTTCCTGAGGTAGCAAAGAAGCAGACTG-AGAATTGTAGATCTTA
131 TATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAG-ATTATAGATCTTA
* * * * * * *
26393107 TCTTCCTAAGCAGTAGTTGAGCAGATCGAAGACGGTGAATCTTATCTTCCCGAGGTAGTAGGGGA
1 TCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTCCGAGGTAGCAGGGGA
* * * * * * *** *
26393172 ACAGATTTTAGTCACTAGCCTTATCTC-CTTGAGGTAGCAAGGGAGAAAGCCAAAGATTTTAGTC
66 GCAGATTTTAGCCACCAGCCTTATCTCTC-TGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTC
* * * *
26393236 TTATCTTCCTAAGGTAGCAGGGAAGCAGACAGAAGGTTGA-AGATCTTA
130 TTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATT-ATAGATCTTA
* * * *
26393284 TCTCCCTGAGTTTGTAGTGGAGTAGACCGAA
1 TCTCCCTAAG-TAGTAGTGGAGCAGATCGAA
26393315 AACAGTAGAT
Statistics
Matches: 966, Mismatches: 117, Indels: 18
0.88 0.11 0.02
Matches are distributed among these distances:
175 2 0.00
176 99 0.10
177 845 0.87
178 20 0.02
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (177 bp):
TCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTCCGAGGTAGCAGGGGA
GCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTCT
TATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTATAGATCTTA
Found at i:26392897 original size:44 final size:44
Alignment explanation
Indices: 26392480--26393113 Score: 229
Period size: 44 Copynumber: 14.3 Consensus size: 44
26392470 TTTAGCCACC
* *
26392480 AGTCTTATC-TCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGT
1 AGTCTTATCTTC-CTGAGGTAGCAAGAGAACAGATTGAAGATTGT
* *
26392524 AGTCTTATCTTCCTGAGGTAGCAAG-GAAGCAGACTGAAGATTAT
1 AGTCTTATCTTCCTGAGGTAGCAAGAGAA-CAGATTGAAGATTGT
* * * * * * *
26392568 AGATCTTATCTCCCT-AAGTAG-TAGTGAAACAGATCGAAGATAGCG
1 AG-TCTTATCTTCCTGAGGTAGCAAGAG-AACAGATTGAAGATTG-T
* * * * * * ** *****
26392613 AATCTTATCTTCCAGAGGTAACAGGGGAGCAGATTTTAGCCACC
1 AGTCTTATCTTCCTGAGGTAGCAAGAGAACAGATTGAAGATTGT
* * * *
26392657 AGCCTTATC-TCTTTGAGGTAGCAAGAGAGCAGGTTGAAGATTGT
1 AGTCTTATCTTC-CTGAGGTAGCAAGAGAACAGATTGAAGATTGT
* * *
26392701 AGTCTTATCTTCCTGAGGTAGCAAG-GAAGCAGACTGATGATTTT
1 AGTCTTATCTTCCTGAGGTAGCAAGAGAA-CAGATTGAAGATTGT
* * * * ** * *
26392745 AGATCTTATCTCCCT-AAGTAG-TAGTGAAACAGATCAAAGATAGCG
1 AG-TCTTATCTTCCTGAGGTAGCAAGAG-AACAGATTGAAGATTG-T
* * * ** *****
26392790 AATCTTATCTTCCCGAGGTAGC-AGGGAAGCAGATTTTAGCCACC
1 AGTCTTATCTTCCTGAGGTAGCAAGAGAA-CAGATTGAAGATTGT
* * * *
26392834 AGCCTTATC-TCTCTAAGGTAGGAAGAGAACAGGTTGAAGATTGT
1 AGTCTTATCTTC-CTGAGGTAGCAAGAGAACAGATTGAAGATTGT
* * * *
26392878 AGTCTTATCTTCCTGAGGTAACAAG-GAAGCAAACTGAATATTGT
1 AGTCTTATCTTCCTGAGGTAGCAAGAGAA-CAGATTGAAGATTGT
* * * * * * * *
26392922 AGATCTTATCTCCCT-AAGTAG-TAGTGGAGCAGATCGAAGATGGCG
1 AG-TCTTATCTTCCTGAGGTAGCAAG-AGAACAGATTGAAGATTG-T
* * * * * ** ****
26392967 AATCTTATCTTCCCGAGGTAGCAGGGGAGCAGATTTTAGCCACT
1 AGTCTTATCTTCCTGAGGTAGCAAGAGAACAGATTGAAGATTGT
* * * * *
26393011 AGCCTTATC-TCTCTAAGGTAGCAAGAGAGCAGGTTAAAGATTGT
1 AGTCTTATCTTC-CTGAGGTAGCAAGAGAACAGATTGAAGATTGT
* *
26393055 AGTCATATCTTCCTGAGGTAGCAA-AGAAGCAGACTG-AGAATTGT
1 AGTCTTATCTTCCTGAGGTAGCAAGAGAA-CAGATTGAAG-ATTGT
26393099 AGATCTTATCTTCCT
1 AG-TCTTATCTTCCT
26393114 AAGCAGTAGT
Statistics
Matches: 417, Mismatches: 140, Indels: 65
0.67 0.23 0.10
Matches are distributed among these distances:
43 24 0.06
44 279 0.67
45 111 0.27
46 3 0.01
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.27
Consensus pattern (44 bp):
AGTCTTATCTTCCTGAGGTAGCAAGAGAACAGATTGAAGATTGT
Found at i:26402936 original size:40 final size:40
Alignment explanation
Indices: 26402876--26403059 Score: 239
Period size: 40 Copynumber: 4.6 Consensus size: 40
26402866 TATTCGAATG
*
26402876 ATATCCGGGCTAA-ATCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * *
26402916 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * *
26402956 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
26402996 ATATCCGGGCTAAG-TCCAGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGATCC-GAAGGCATTTATGCTAGTGACT
*
26403036 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
26403060 CTTGTGCGAG
Statistics
Matches: 126, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
39 3 0.02
40 117 0.93
41 6 0.05
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:26404715 original size:19 final size:19
Alignment explanation
Indices: 26404691--26404728 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
26404681 TTTGGCCTAT
26404691 TTTCTCCATT-TTTGGCTCG
1 TTTCT-CATTCTTTGGCTCG
26404710 TTTCTCATTCCTTTGGCTC
1 TTTCTCATT-CTTTGGCTC
26404729 TCCTATGCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.05, C:0.29, G:0.13, T:0.53
Consensus pattern (19 bp):
TTTCTCATTCTTTGGCTCG
Done.