Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 80 of 343
Found at i:26408163 original size:122 final size:120
Alignment explanation
Indices: 26407948--26408171 Score: 313
Period size: 122 Copynumber: 1.9 Consensus size: 120
26407938 CACAATAACA
* * *
26407948 ATGAGAATGAGAATAGAAATGTAATAGGTATGAGGTTTTCTTAATCTCAACTTAACACGGAATGT
1 ATGAGAATAAGAATAGAAATGTAATAGGTATGAGGTGTTCTTAATCTCAACTTAACACGAAATGT
* *
26408013 ATGATAACTAACCTAGGAATGCAAATTAAATGATAGACATTGGCATGGTAATAGT
66 ATGATAACTAACCTAAGAATACAAATTAAATGATAGACATTGGCATGGTAATAGT
* * * * ** * *
26408068 ATGAGAATAAGCATAGTAATGTCATGGGTATGAGGTGTTCTTAATAACTTGATTTAACATGAAAT
1 ATGAGAATAAGAATAGAAATGTAATAGGTATGAGGTGTTCTTAAT--CTCAACTTAACACGAAAT
26408133 GTATGATAACTAACCTAAGAATACAAATTAAATGATAGA
64 GTATGATAACTAACCTAAGAATACAAATTAAATGATAGA
26408172 AAAATGAAAA
Statistics
Matches: 89, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
120 39 0.44
122 50 0.56
ACGTcount: A:0.41, C:0.09, G:0.20, T:0.30
Consensus pattern (120 bp):
ATGAGAATAAGAATAGAAATGTAATAGGTATGAGGTGTTCTTAATCTCAACTTAACACGAAATGT
ATGATAACTAACCTAAGAATACAAATTAAATGATAGACATTGGCATGGTAATAGT
Found at i:26410885 original size:40 final size:40
Alignment explanation
Indices: 26410806--26411023 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 40
26410796 AAACCAAGTA
* * *
26410806 CCTTCGGAATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
26410845 CCTTCGGGACTTAGCCCGGTTATAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
26410885 CCTTCGGGACTTAGCCCGGGA-ATAGTCACTCGCACAAATG
1 CCTTCGGGACTTAGCCC-GGATATAGTAACTCGCACAAATG
*
26410925 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
26410965 CCTTCGGGACTTAGCCCGGAAATAGTCACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
26411005 CCTTCGGGACTTGGCCCGG
1 CCTTCGGGACTTAGCCCGG
26411024 TTATCATTCG
Statistics
Matches: 161, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
39 15 0.09
40 144 0.89
41 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:26410938 original size:80 final size:80
Alignment explanation
Indices: 26410806--26411027 Score: 340
Period size: 80 Copynumber: 2.8 Consensus size: 80
26410796 AAACCAAGTA
* * * *
26410806 CCTTCGGAATTTAG-CCGGATATAG-CTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATA
1 CCTTCGGGACTTAGCCCGGAAATAGTC-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATA
26410869 ATAACTCGCACAAATG
65 ATAACTCGCACAAATG
* * * *
26410885 CCTTCGGGACTTAGCCCGGGAATAGTCACTCGCACAAATGCCTTCGGGACTTAGCCCAGATATAG
1 CCTTCGGGACTTAGCCCGGAAATAGTCACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAA
26410950 TAACTCGCACAAATG
66 TAACTCGCACAAATG
*
26410965 CCTTCGGGACTTAGCCCGGAAATAGTCACTCGCACAAATGCCTTCGGGACTTGGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGAAATAGTCACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
26411028 CATTCGAATA
Statistics
Matches: 129, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
79 12 0.09
80 116 0.90
81 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGAAATAGTCACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAA
TAACTCGCACAAATG
Found at i:26423536 original size:41 final size:41
Alignment explanation
Indices: 26423479--26423563 Score: 143
Period size: 41 Copynumber: 2.1 Consensus size: 41
26423469 TATCTTGCAA
* *
26423479 AGAAAGTTGTTTAAATCCATCTTCCATGACCACCAAATCCT
1 AGAAAGTTGTTGAAATCCATCTTCCATAACCACCAAATCCT
*
26423520 AGAAAGTTGTTGAAATCCATCTTCCATAACTACCAAATCCT
1 AGAAAGTTGTTGAAATCCATCTTCCATAACCACCAAATCCT
26423561 AGA
1 AGA
26423564 CCTGTCCCAA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.36, C:0.25, G:0.11, T:0.28
Consensus pattern (41 bp):
AGAAAGTTGTTGAAATCCATCTTCCATAACCACCAAATCCT
Found at i:26428066 original size:17 final size:15
Alignment explanation
Indices: 26428050--26428086 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
26428040 TATTTTAATT
26428050 ATTA-AAATATAAAA
1 ATTATAAATATAAAA
*
26428064 ATTATAAATATAAAT
1 ATTATAAATATAAAA
26428079 A-TATAAAT
1 ATTATAAAT
26428087 TTATATATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 11 0.52
15 10 0.48
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (15 bp):
ATTATAAATATAAAA
Found at i:26428077 original size:22 final size:23
Alignment explanation
Indices: 26428052--26428102 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
26428042 TTTTAATTAT
26428052 TAAAATATA-AAAATTATAAATA
1 TAAAATATATAAAATTATAAATA
* * *
26428074 T-AAATATATAAATTTATATATT
1 TAAAATATATAAAATTATAAATA
26428096 TAAAATA
1 TAAAATA
26428103 AATTTCAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
21 7 0.29
22 12 0.50
23 5 0.21
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (23 bp):
TAAAATATATAAAATTATAAATA
Found at i:26428083 original size:14 final size:14
Alignment explanation
Indices: 26428054--26428105 Score: 52
Period size: 14 Copynumber: 3.7 Consensus size: 14
26428044 TTAATTATTA
*
26428054 AAATATAAAAATTAT
1 AAATATAAATA-TAT
26428069 AAATATAAATATAT
1 AAATATAAATATAT
* * *
26428083 AAATTTATATATTT
1 AAATATAAATATAT
26428097 AAA-ATAAAT
1 AAATATAAAT
26428106 TTCAAAAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
13 4 0.13
14 17 0.55
15 10 0.32
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (14 bp):
AAATATAAATATAT
Found at i:26428150 original size:33 final size:34
Alignment explanation
Indices: 26428087--26428156 Score: 81
Period size: 33 Copynumber: 2.1 Consensus size: 34
26428077 ATATATAAAT
*
26428087 TTATATATTTAAAATAAATTTCAAAAAAAATA-A
1 TTATATACTTAAAATAAATTTCAAAAAAAATATA
* * *
26428120 TTATATACTTAATATAAATATT-ACATAAAATATA
1 TTATATACTTAAAATAAAT-TTCAAAAAAAATATA
26428154 TTA
1 TTA
26428157 GAGTATAAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
33 25 0.81
34 6 0.19
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (34 bp):
TTATATACTTAAAATAAATTTCAAAAAAAATATA
Found at i:26444989 original size:26 final size:26
Alignment explanation
Indices: 26444942--26445010 Score: 66
Period size: 26 Copynumber: 2.7 Consensus size: 26
26444932 TCTCATCCCT
* ** *
26444942 ATTTTACCCCTAACAAAATTTTGAAA
1 ATTTTACCCTTAGTAAATTTTTGAAA
* **
26444968 ATTTTATCCTTAGTAAATTTTTGACG
1 ATTTTACCCTTAGTAAATTTTTGAAA
*
26444994 ATTTTACCCTTGGTAAA
1 ATTTTACCCTTAGTAAA
26445011 ATTTCAAGAA
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.33, C:0.16, G:0.09, T:0.42
Consensus pattern (26 bp):
ATTTTACCCTTAGTAAATTTTTGAAA
Found at i:26450927 original size:25 final size:25
Alignment explanation
Indices: 26450899--26450947 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
26450889 TAAGTTTAAA
26450899 CTGAAAATACTGGAGATAGTATATT
1 CTGAAAATACTGGAGATAGTATATT
* * * *
26450924 CTGAAACTATTGTAGGTAGTATAT
1 CTGAAAATACTGGAGATAGTATAT
26450948 GGTGAAAACA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.37, C:0.08, G:0.20, T:0.35
Consensus pattern (25 bp):
CTGAAAATACTGGAGATAGTATATT
Found at i:26456045 original size:22 final size:22
Alignment explanation
Indices: 26456020--26456062 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
26456010 TCCCATATCT
*
26456020 TTTTATT-TTTGTTTTCAAAATA
1 TTTTATTCTTT-TTTTAAAAATA
*
26456042 TTTTCTTCTTTTTTTAAAAAT
1 TTTTATTCTTTTTTTAAAAAT
26456063 TCCCAAGGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.26, C:0.07, G:0.02, T:0.65
Consensus pattern (22 bp):
TTTTATTCTTTTTTTAAAAATA
Found at i:26458108 original size:12 final size:12
Alignment explanation
Indices: 26458091--26458120 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
26458081 CTCCAATTTT
26458091 CACACGACCTAG
1 CACACGACCTAG
*
26458103 CACACGACCTGG
1 CACACGACCTAG
26458115 CACACG
1 CACACG
26458121 GGCGTGTAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.30, C:0.43, G:0.20, T:0.07
Consensus pattern (12 bp):
CACACGACCTAG
Found at i:26463534 original size:28 final size:27
Alignment explanation
Indices: 26463419--26463597 Score: 173
Period size: 28 Copynumber: 6.6 Consensus size: 27
26463409 TAAATTGTAC
26463419 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
26463446 TGCACTAAGTGTGCGAAATGGAATATG-
1 AGCACTAAGTGTGCG-ATTTGACTATGT
* * * *
26463473 ATGCACTAAGTATGCGAATTGACCATTGC
1 A-GCACTAAGTGTGCGATTTGACTA-TGT
* *
26463502 GGCACTAAGTGTGCGAGTTTGACTTTGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
26463530 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
26463557 AGCACTAAGTGTGCGAGTTGA-TATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
26463583 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26463598 GACTCAATAT
Statistics
Matches: 124, Mismatches: 23, Indels: 11
0.78 0.15 0.07
Matches are distributed among these distances:
26 17 0.14
27 48 0.39
28 54 0.44
29 5 0.04
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:26471599 original size:27 final size:27
Alignment explanation
Indices: 26471568--26471745 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
26471558 TAAATTGTAC
26471568 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
26471595 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26471621 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
26471649 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
26471677 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26471704 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
26471731 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26471746 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:26471682 original size:82 final size:81
Alignment explanation
Indices: 26471569--26471724 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
26471559 AAATTGTACA
* *
26471569 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
26471633 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
26471650 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
26471715 TGCGAGTTGA
65 TGCGAATTGA
26471725 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:26471736 original size:82 final size:81
Alignment explanation
Indices: 26471565--26471745 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
26471555 GATTAAATTG
* *
26471565 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
26471630 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
26471646 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
26471710 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
26471728 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
26471746 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:26473437 original size:43 final size:44
Alignment explanation
Indices: 26473388--26473559 Score: 208
Period size: 43 Copynumber: 4.0 Consensus size: 44
26473378 GATTGTTGGG
*
26473388 ATGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCGTAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
26473432 -TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGT-T
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * * * * * *
26473474 ATATGATTTCGTGTAAGACCCTGTTTGGGACAGTGGCATTG-AT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * * *
26473517 ATGTGATAACATGTAAGACCATATCTGGGATA-TGGCATTGTAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
26473560 GAGCTTTATG
Statistics
Matches: 109, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
42 9 0.08
43 100 0.92
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (44 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
Found at i:26475665 original size:56 final size:56
Alignment explanation
Indices: 26475579--26475698 Score: 222
Period size: 56 Copynumber: 2.1 Consensus size: 56
26475569 ACAAGGGATG
*
26475579 ATGGGTAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
26475635 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
26475691 ATGGGCAA
1 ATGGGCAA
26475699 TAAACTAATA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 62 1.00
ACGTcount: A:0.45, C:0.08, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:26476961 original size:78 final size:79
Alignment explanation
Indices: 26476827--26477049 Score: 258
Period size: 78 Copynumber: 2.8 Consensus size: 79
26476817 TCGAATGATG
* * * * * *
26476827 TCCGGGCTAAGTCCCGAAGG--TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
26476889 TTGTGCGAGATACTAAT
63 TTGTGCGAGATACTAAA
*
26476906 TCCGGGCTAAG-CCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATTT
*
26476969 GTGCGAGTTACTAAA
65 GTGCGAGATACTAAA
* * *
26476984 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
26477049 G
65 G
26477050 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 13
0.83 0.09 0.09
Matches are distributed among these distances:
77 9 0.07
78 49 0.40
79 17 0.14
80 47 0.38
81 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:26477056 original size:40 final size:40
Alignment explanation
Indices: 26476827--26477049 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
26476817 TCGAATGATG
* * * *
26476827 TCCGGGCTAAGTCCCGAAGG--TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
26476866 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26476906 TCCGGGCTAAG--CCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26476944 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26476984 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
26477025 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26477050 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 15, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
38 34 0.21
39 17 0.10
40 103 0.63
41 9 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26482102 original size:15 final size:15
Alignment explanation
Indices: 26482082--26482113 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
26482072 TATCCATGCA
*
26482082 AAATATAAAATACAT
1 AAATATAAAAGACAT
26482097 AAATATAAAAGACAT
1 AAATATAAAAGACAT
26482112 AA
1 AA
26482114 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.06, G:0.03, T:0.22
Consensus pattern (15 bp):
AAATATAAAAGACAT
Found at i:26493985 original size:28 final size:29
Alignment explanation
Indices: 26493953--26494015 Score: 103
Period size: 29 Copynumber: 2.2 Consensus size: 29
26493943 CATGGTCTAA
26493953 GACACGGGCGTG-TCCTA-GCCATGTGAAG
1 GACACGGGCGTGTTCC-AGGCCATGTGAAG
26493981 GACACGGGCGTGTTCCAGGCCATGTGAAG
1 GACACGGGCGTGTTCCAGGCCATGTGAAG
26494010 GACACG
1 GACACG
26494016 TGCTTGTGAC
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
28 13 0.39
29 20 0.61
ACGTcount: A:0.22, C:0.25, G:0.37, T:0.16
Consensus pattern (29 bp):
GACACGGGCGTGTTCCAGGCCATGTGAAG
Found at i:26496612 original size:40 final size:40
Alignment explanation
Indices: 26496557--26496697 Score: 176
Period size: 40 Copynumber: 3.5 Consensus size: 40
26496547 TATTCGGATG
*
26496557 ATATCCGGGCTAAGTCCCAAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* ** * *
26496597 ATATCTGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
26496637 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
26496677 ATATCC-GGCTAAATCCAGAAG
1 ATATCCGGGCTAAGTCCCGAAG
26496698 ATACTTGGGT
Statistics
Matches: 85, Mismatches: 16, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
39 12 0.14
40 73 0.86
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:26504687 original size:31 final size:29
Alignment explanation
Indices: 26504624--26504687 Score: 83
Period size: 29 Copynumber: 2.1 Consensus size: 29
26504614 AAATCAAATT
**
26504624 TTCATGTATAAAATTGCACAAAATTAAAG
1 TTCATGTATAAAATTGCACAAAACAAAAG
*
26504653 TTCATGTATAAAATTGTACATTAAACAAAAG
1 TTCATGTATAAAATTGCACA--AAACAAAAG
26504684 TTCA
1 TTCA
26504688 ATATAATTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
29 19 0.63
31 11 0.37
ACGTcount: A:0.47, C:0.11, G:0.09, T:0.33
Consensus pattern (29 bp):
TTCATGTATAAAATTGCACAAAACAAAAG
Found at i:26504788 original size:14 final size:14
Alignment explanation
Indices: 26504749--26504780 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
26504739 ATACTGAAAA
*
26504749 TTTTAATATTTAAT
1 TTTTAACATTTAAT
26504763 TTTTAACATTTAAT
1 TTTTAACATTTAAT
26504777 TTTT
1 TTTT
26504781 TTAATTTATC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (14 bp):
TTTTAACATTTAAT
Found at i:26506371 original size:15 final size:15
Alignment explanation
Indices: 26506353--26506383 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
26506343 AATGCTCCAA
26506353 TTGAATCTTCATGTG
1 TTGAATCTTCATGTG
26506368 TTGAATCTTCATGTG
1 TTGAATCTTCATGTG
26506383 T
1 T
26506384 AGCTTTCCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.13, G:0.19, T:0.48
Consensus pattern (15 bp):
TTGAATCTTCATGTG
Found at i:26511217 original size:16 final size:16
Alignment explanation
Indices: 26511198--26511228 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26511188 AGGTTGCTAT
26511198 TGTATATATATATATA
1 TGTATATATATATATA
*
26511214 TGTATGTATATATAT
1 TGTATATATATATAT
26511229 TTGAATTATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.00, G:0.10, T:0.52
Consensus pattern (16 bp):
TGTATATATATATATA
Found at i:26511884 original size:24 final size:23
Alignment explanation
Indices: 26511857--26511911 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 23
26511847 CGGGTTTTAA
*
26511857 AATTATTATAAACAATTTTTTTTT
1 AATTATTAT-AACAATTTTTATTT
*
26511881 AATTATGT-TAATAATTTTTATTT
1 AATTAT-TATAACAATTTTTATTT
*
26511904 AAATATTA
1 AATTATTA
26511912 AAATTACATT
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
22 1 0.04
23 17 0.65
24 7 0.27
25 1 0.04
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (23 bp):
AATTATTATAACAATTTTTATTT
Found at i:26523775 original size:43 final size:42
Alignment explanation
Indices: 26523682--26523791 Score: 127
Period size: 43 Copynumber: 2.6 Consensus size: 42
26523672 GATTTGAGAT
* * *
26523682 TTACGTGTAAGA-CCATGTCTGGGACATCGGCATCATATTTGA
1 TTACATGTAAGATCC-TGTCTGGGATATCGGCACCATATTTGA
*
26523724 TTCCATGTAAGATCCTGTCTGGGATAGT-GGCACCGATATTTGA
1 TTACATGTAAGATCCTGTCTGGGATA-TCGGCACC-ATATTTGA
26523767 TTACATGTAAGATCAC-GTCTGGGAT
1 TTACATGTAAGATC-CTGTCTGGGAT
26523792 GTTGTCATTG
Statistics
Matches: 59, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
42 25 0.42
43 33 0.56
44 1 0.02
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (42 bp):
TTACATGTAAGATCCTGTCTGGGATATCGGCACCATATTTGA
Found at i:26539740 original size:27 final size:27
Alignment explanation
Indices: 26539694--26539757 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
26539684 TTTCGCCATG
*
26539694 AAGGCGTTCTTTTGCAGAGATAACCACA
1 AAGGC-TTCCTTTGCAGAGATAACCACA
* **
26539722 AAGGCTTCCTTTGTAGAGATTGCCACA
1 AAGGCTTCCTTTGCAGAGATAACCACA
26539749 AAGGCTTCC
1 AAGGCTTCC
26539758 ATTTCTCTGA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
27 27 0.84
28 5 0.16
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (27 bp):
AAGGCTTCCTTTGCAGAGATAACCACA
Found at i:26546580 original size:26 final size:27
Alignment explanation
Indices: 26546529--26546580 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
26546519 GTTTGGTGTT
26546529 ACCAACCATGACACAATTTTTGATATA
1 ACCAACCATGACACAATTTTTGATATA
* *
26546556 ACCAAGCATGACAC-ATTTTTTATAT
1 ACCAACCATGACACAATTTTTGATAT
26546581 TTTATATATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.33
Consensus pattern (27 bp):
ACCAACCATGACACAATTTTTGATATA
Found at i:26551907 original size:40 final size:40
Alignment explanation
Indices: 26551816--26551894 Score: 158
Period size: 40 Copynumber: 2.0 Consensus size: 40
26551806 GGTTGGAAGT
26551816 TAAATGAGACTACTTTGCAAAGTCAATTCATGAAATTGTA
1 TAAATGAGACTACTTTGCAAAGTCAATTCATGAAATTGTA
26551856 TAAATGAGACTACTTTGCAAAGTCAATTCATGAAATTGT
1 TAAATGAGACTACTTTGCAAAGTCAATTCATGAAATTGT
26551895 TCATTAGGGA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.33
Consensus pattern (40 bp):
TAAATGAGACTACTTTGCAAAGTCAATTCATGAAATTGTA
Found at i:26564584 original size:17 final size:18
Alignment explanation
Indices: 26564557--26564590 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
26564547 AATTAAATAT
26564557 ATGCATATTAAATTATTA
1 ATGCATATTAAATTATTA
*
26564575 ATGC-TATTAATTTATT
1 ATGCATATTAAATTATT
26564591 TAAACAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (18 bp):
ATGCATATTAAATTATTA
Found at i:26564931 original size:30 final size:30
Alignment explanation
Indices: 26564876--26564932 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
26564866 CTTTTGAAAA
* *
26564876 TATTTACAAAAAGAGGCATCTAATTTTTAT
1 TATTTACAAAAAGAGGCACCAAATTTTTAT
26564906 TATTTACAAAAAGA-GCTACCAAATTTT
1 TATTTACAAAAAGAGGC-ACCAAATTTT
26564933 AAAAATATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 2 0.08
30 22 0.92
ACGTcount: A:0.42, C:0.12, G:0.09, T:0.37
Consensus pattern (30 bp):
TATTTACAAAAAGAGGCACCAAATTTTTAT
Found at i:26572153 original size:13 final size:13
Alignment explanation
Indices: 26572135--26572160 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26572125 GGGGCTAATT
26572135 TGCAATTTGAACA
1 TGCAATTTGAACA
26572148 TGCAATTTGAACA
1 TGCAATTTGAACA
26572161 AGTCTTCAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGCAATTTGAACA
Found at i:26572271 original size:14 final size:14
Alignment explanation
Indices: 26572252--26572282 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
26572242 TCTCCTTGCC
*
26572252 CGGTTCGGTTCACT
1 CGGTTCGGTTCAAT
26572266 CGGTTCGGTTCAAT
1 CGGTTCGGTTCAAT
26572280 CGG
1 CGG
26572283 ACCATTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.10, C:0.26, G:0.32, T:0.32
Consensus pattern (14 bp):
CGGTTCGGTTCAAT
Found at i:26582668 original size:44 final size:43
Alignment explanation
Indices: 26582605--26582719 Score: 128
Period size: 44 Copynumber: 2.7 Consensus size: 43
26582595 TATGTGACTT
*
26582605 CGTGTAAGACCACATCTGGGACGTTGGCATCGATT-TATGATTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCG-TTATATGA-TTA
* *
26582649 CGTGTAAGACC-CTGTCTGGGACAG-TGGTATCGTTATGTGATTA
1 CGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGTTATATGATTA
* *
26582692 CATGGAAGACCACGTCTGGGACGTTGGC
1 CGTGTAAGACCACGTCTGGGACGTTGGC
26582720 GTTGTATGAG
Statistics
Matches: 60, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
42 1 0.02
43 27 0.45
44 31 0.52
45 1 0.02
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.29
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCGTTATATGATTA
Found at i:26582711 original size:43 final size:44
Alignment explanation
Indices: 26582610--26582719 Score: 120
Period size: 43 Copynumber: 2.5 Consensus size: 44
26582600 GACTTCGTGT
* * *
26582610 AAGACCACATCTGGGACGTTGGCATCGATTTATGATTTACGTGT
1 AAGACCACGTCTGGGACGTTGGCATCGATTTATGATTTACATGG
* *
26582654 AAGACC-CTGTCTGGGACAG-TGGTATCG-TTATGTGA-TTACATGG
1 AAGACCAC-GTCTGGGAC-GTTGGCATCGATT-TATGATTTACATGG
26582697 AAGACCACGTCTGGGACGTTGGC
1 AAGACCACGTCTGGGACGTTGGC
26582720 GTTGTATGAG
Statistics
Matches: 55, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
42 1 0.02
43 27 0.49
44 26 0.47
45 1 0.02
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (44 bp):
AAGACCACGTCTGGGACGTTGGCATCGATTTATGATTTACATGG
Found at i:26583082 original size:18 final size:18
Alignment explanation
Indices: 26583061--26583096 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
26583051 AATTTCATTG
26583061 AAATGATTTATTTGCTTA
1 AAATGATTTATTTGCTTA
26583079 AAATGATTTATTTGCTTA
1 AAATGATTTATTTGCTTA
26583097 TGACTTACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.06, G:0.11, T:0.50
Consensus pattern (18 bp):
AAATGATTTATTTGCTTA
Found at i:26598121 original size:43 final size:43
Alignment explanation
Indices: 26598056--26598222 Score: 178
Period size: 43 Copynumber: 3.9 Consensus size: 43
26598046 AGCTCGTACA
* * *
26598056 ATGCC-ATATCCTAGATATGGTCTTACACGTTATCACATATCG
1 ATGCCAATATCCCAGACATGGTCTTACACGTAATCACATATCG
* * * *
26598098 ATGCCACTATCCCAGACAGGGTCTTACACGTAATCGA-TTAACG
1 ATGCCAATATCCCAGACATGGTCTTACACGTAATC-ACATATCG
* *
26598141 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA-ATACA
1 ATGCCAATATCCCAGACATGGTCTTACACGTAATCACATAT-CG
** * *
26598184 ATGCCAATGCCCCAGACATGGTCTTACATGAAATCACAT
1 ATGCCAATATCCCAGACATGGTCTTACACGTAATCACAT
26598223 CTTTGAAACC
Statistics
Matches: 104, Mismatches: 16, Indels: 8
0.81 0.12 0.06
Matches are distributed among these distances:
42 7 0.07
43 96 0.92
44 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.26
Consensus pattern (43 bp):
ATGCCAATATCCCAGACATGGTCTTACACGTAATCACATATCG
Found at i:26604812 original size:22 final size:24
Alignment explanation
Indices: 26604754--26604837 Score: 82
Period size: 25 Copynumber: 3.5 Consensus size: 24
26604744 CATTTATAAA
* *
26604754 AAAAATATGTACATAATATAGTGT
1 AAAAATATATACATAATATAATGT
*
26604778 AAAAAATACATACATAATATAAT-T
1 -AAAAATATATACATAATATAATGT
*
26604802 -AAAATATATACATAAGATAACATGT
1 AAAAATATATACATAATAT-A-ATGT
*
26604827 AAATATATATA
1 AAAAATATATA
26604838 TATATAAATA
Statistics
Matches: 49, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
22 16 0.33
23 1 0.02
24 3 0.06
25 20 0.41
26 9 0.18
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.31
Consensus pattern (24 bp):
AAAAATATATACATAATATAATGT
Found at i:26604873 original size:25 final size:24
Alignment explanation
Indices: 26604837--26604968 Score: 80
Period size: 25 Copynumber: 5.5 Consensus size: 24
26604827 AAATATATAT
26604837 ATATATAAATAATATAGTATTAAAG
1 ATATAT-AATAATATAGTATTAAAG
* * *
26604862 ATATATACATAAAATAGGA-TAATAT
1 ATATATA-ATAATATAGTATTAA-AG
* *
26604887 ATATATAAGTAATATAGAATT-TAG
1 ATATATAA-TAATATAGTATTAAAG
* *
26604911 A-ATATACCTAATATA-T-TAAAAG
1 ATATATA-ATAATATAGTATTAAAG
*
26604933 A-ATATATATAATATAATATT-AAG
1 ATATATA-ATAATATAGTATTAAAG
*
26604956 AAATATAATAATA
1 ATATATAATAATA
26604969 ACAAAAAAGA
Statistics
Matches: 84, Mismatches: 14, Indels: 20
0.71 0.12 0.17
Matches are distributed among these distances:
21 1 0.01
22 15 0.18
23 23 0.27
24 13 0.15
25 31 0.37
26 1 0.01
ACGTcount: A:0.56, C:0.02, G:0.07, T:0.35
Consensus pattern (24 bp):
ATATATAATAATATAGTATTAAAG
Found at i:26605476 original size:30 final size:30
Alignment explanation
Indices: 26605435--26605593 Score: 273
Period size: 30 Copynumber: 5.3 Consensus size: 30
26605425 TAGGTACAAG
26605435 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* *
26605465 AGGTAGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
*
26605495 TGGTGGTGGAGTAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* *
26605525 AGGTAGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
26605555 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
26605585 TGGTGGTGG
1 TGGTGGTGG
26605594 CAAAGGCTAG
Statistics
Matches: 119, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 119 1.00
ACGTcount: A:0.18, C:0.06, G:0.50, T:0.26
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:26606365 original size:88 final size:86
Alignment explanation
Indices: 26606229--26606434 Score: 259
Period size: 87 Copynumber: 2.4 Consensus size: 86
26606219 TCCTGAGCTT
* * * * *
26606229 AACTCATTTCTCGTGATATGAATTGACTCTTTAAAACTAAACATTAAAAACAGAAATTGAAAATA
1 AACTCACTTCTCGTAATATGAGTTGA-TTTTTAAAACAAAACATT-AAAACAGAAATTGAAAATA
*
26606294 GCTCAGCACGTGAGCCAAGGCTC
64 CCTCAGCACGTGAGCCAAGGCTC
* ** * **
26606317 AACTCACTTCTCGCAATATGAGTTGATTTTTAAAACAAAATTTGTAAAATAGATTTTGAAAATAC
1 AACTCACTTCTCGTAATATGAGTTGATTTTTAAAACAAAACAT-TAAAACAGAAATTGAAAATAC
*
26606382 CTCGGCACGTGAGCCAAGGCTC
65 CTCAGCACGTGAGCCAAGGCTC
*
26606404 AACTCACCTCTCGTAATATGAGTTGATTTTT
1 AACTCACTTCTCGTAATATGAGTTGATTTTT
26606435 GCAAAGCATA
Statistics
Matches: 102, Mismatches: 15, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
87 79 0.77
88 23 0.23
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.30
Consensus pattern (86 bp):
AACTCACTTCTCGTAATATGAGTTGATTTTTAAAACAAAACATTAAAACAGAAATTGAAAATACC
TCAGCACGTGAGCCAAGGCTC
Found at i:26606488 original size:102 final size:104
Alignment explanation
Indices: 26606372--26606574 Score: 297
Period size: 102 Copynumber: 2.0 Consensus size: 104
26606362 AAAATAGATT
*
26606372 TTGAAAATACCTCGGCACGTGAGCCAAGGCTCAACTCACCTCTCGTAATATGAGTTG-ATTTTTG
1 TTGAAAATACCTCGGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGTATTTTTG
26606436 -CAAAGCATAAATTGAAAAAAAATAA-AAA-TAAAAATCAA
66 ACAAA-CATAAATTGAAAAAAAA-AAGAAATTAAAAATCAA
** * ** *
26606474 TTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGTTTTTTTG
1 TTGAAAATACCTCGGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGTATTTTTG
26606539 ACAAACATAAATTGAAAAAAAAAAGAAATTAAAAAT
66 ACAAACATAAATTGAAAAAAAAAAGAAATTAAAAAT
26606575 ATCTCAGCGT
Statistics
Matches: 90, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
102 53 0.59
103 26 0.29
104 11 0.12
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.27
Consensus pattern (104 bp):
TTGAAAATACCTCGGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGTATTTTTG
ACAAACATAAATTGAAAAAAAAAAGAAATTAAAAATCAA
Found at i:26606560 original size:91 final size:88
Alignment explanation
Indices: 26606531--26606829 Score: 225
Period size: 89 Copynumber: 3.3 Consensus size: 88
26606521 ATATGAGTTG
* * * *
26606531 TTTTTTTGACAAACATAAATTGAAAAAAAAAAGAAATTAAAAATATCTCAGCGTGTCA-TGAGGC
1 TTTT-TTGA-AAACA-AAATTG--AAAAAAAA-TAATTGAAAATACCTCAGCGTGTGATTGAGGC
* * *
26606595 TGAACTCACCTATCGCAATATGAGTTGAT
60 TCAACTCACCTCTCGCAATATGAGCTGAT
* **
26606624 TTTTTGGAAAAACAAAATTTGAAAAACAGAAT--TTGAAAATACCTCAGCGTGTGAGTCAAGGCT
1 TTTTTTG-AAAACAAAA-TTGAAAAA-A-AATAATTGAAAATACCTCAGCGTGTGA-TTGAGGCT
* *
26606687 CAACTCACCACTCGTAATATGAGCTGATT
61 CAACTCACCTCTCGCAATATGAGCTGA-T
* * * * *
26606716 TTTTTTGAAACACAGAAATTGAAGAACAGA-AATGGAAAACACCTCAGC--GT-CTTGAGGCTCA
1 TTTTTTGAAA-ACA-AAATTGAA-AAAAAATAATTGAAAATACCTCAGCGTGTGATTGAGGCTCA
26606777 ACTCACCTCTCGCAATATGAGCTGATTT
63 ACTCACCTCTCGCAATATGAGCTGA--T
26606805 TTTTTTGAAAGACAGAAATTGAAAA
1 TTTTTTGAAA-ACA-AAATTGAAAA
26606830 TACCTCAACG
Statistics
Matches: 170, Mismatches: 23, Indels: 31
0.76 0.10 0.14
Matches are distributed among these distances:
88 33 0.19
89 43 0.25
90 7 0.04
91 35 0.21
92 42 0.25
93 10 0.06
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28
Consensus pattern (88 bp):
TTTTTTGAAAACAAAATTGAAAAAAAATAATTGAAAATACCTCAGCGTGTGATTGAGGCTCAACT
CACCTCTCGCAATATGAGCTGAT
Found at i:26606662 original size:13 final size:14
Alignment explanation
Indices: 26606630--26606662 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
26606620 TGATTTTTTG
26606630 GAAAAACAAAATTT
1 GAAAAACAAAATTT
*
26606644 GAAAAACAGAATTT
1 GAAAAACAAAATTT
26606658 GAAAA
1 GAAAA
26606663 TACCTCAGCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.64, C:0.06, G:0.12, T:0.18
Consensus pattern (14 bp):
GAAAAACAAAATTT
Found at i:26606690 original size:182 final size:167
Alignment explanation
Indices: 26606472--26607199 Score: 522
Period size: 148 Copynumber: 4.5 Consensus size: 167
26606462 AATAAAAATC
*
26606472 AATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGTTTTTT
1 AATTGAAAATACCTCAGCGTGTGATC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGTTTTTT
* * * * *
26606537 TGACAAACATAAATTGAAAAAAAAAAGAAATTAAAAATATCTCAGCGTGTCATGAGGCTGAACTC
65 TGACAAACAAAAATTGAAAAAAAAAAGAAATGAAAAACACCTCAGC--GTCATGAGGCTCAACTC
*
26606602 ACCTATCGCAATATGAGTTGATTTTTTGGAAAAACAAAATTTGAAAAACAGA
128 ACCTATCGCAATATGAGCTGATTTTTT------------TTTGAAAAACAGA
* * * * *
26606654 ATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGTAATATGAGCTGATTTTT
1 AATTGAAAATACCTCAGCGTGTGA-TCGAGGCTCAACTCACCTCTCGCAATATGAGTTG--TTTT
* * * * *
26606719 TTTGA-AACACAGAAATTG---AAGAACAGAAATGGAAAACACCTCAGCGTCTTGAGGCTCAACT
63 TTTGACAA-ACAAAAATTGAAAAAAAAAAGAAATGAAAAACACCTCAGCGTCATGAGGCTCAACT
* *
26606780 CACCTCTCGCAATATGAGCTGATTTTTTTTTGAAAGACAGA
127 CACCTATCGCAATATGAGCTGATTTTTTTTTGAAAAACAGA
* * * * *
26606821 AATTGAAAATACCTCAACGTGT-CTTGAGGCTCAACTCAACTCTCGCAATATGAGTTG-ATTTTT
1 AATTGAAAATACCTCAGCGTGTGATCGAGGCTCAACTCACCTCTCGCAATATGAGTTGTTTTTTT
* * *
26606884 GACAAACAAAAATT-----------GAAAT------TACCTCAGCATGTCCTGAGGCTTAACTCA
66 GACAAACAAAAATTGAAAAAAAAAAGAAATGAAAAACACCTCAGC--GTCATGAGGCTCAACTCA
* *
26606932 CCTATCGCAATGTGAGTTGA--TTTTTTTGAAAAACAGA
129 CCTATCGCAATATGAGCTGATTTTTTTTTGAAAAACAGA
* * * * * * **
26606969 AATTGAAAATACCTCAACATGT-CTTGAGGCTCAACTCACTTCTTGCAATATGAGTTG-AGTTTT
1 AATTGAAAATACCTCAGCGTGTGATCGAGGCTCAACTCACCTCTCGCAATATGAGTTGTTTTTTT
* * *
26607032 GACAAACAAAAATT-----------GAAAT------TACCTCAGCGTCTTGAGGTTCAACTCACC
66 GACAAACAAAAATTGAAAAAAAAAAGAAATGAAAAACACCTCAGCGTCATGAGGCTCAACTCACC
*
26607080 TATCGCAATATGAGTTGA-TTTTTTTTGAAAAACAGA
131 TATCGCAATATGAGCTGATTTTTTTTTGAAAAACAGA
*** *
26607116 AATTGAAAATACCTCAGCGTGCCCT-GAGGCTCAACTCACCTCTCACAATATGAGTTGGTTTTTT
1 AATTGAAAATACCTCAGCGTGTGATCGAGGCTCAACTCACCTCTCGCAATATGAGTT-GTTTTTT
*
26607180 TGACAAACAGAAATTGAAAA
65 TGACAAACAAAAATTGAAAA
26607200 TACCTCAGCG
Statistics
Matches: 476, Mismatches: 54, Indels: 60
0.81 0.09 0.10
Matches are distributed among these distances:
146 34 0.07
147 64 0.13
148 113 0.24
149 17 0.04
150 33 0.07
154 5 0.01
162 15 0.03
163 2 0.00
165 28 0.06
167 32 0.07
179 40 0.08
181 21 0.04
182 50 0.11
183 4 0.01
184 18 0.04
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (167 bp):
AATTGAAAATACCTCAGCGTGTGATCGAGGCTCAACTCACCTCTCGCAATATGAGTTGTTTTTTT
GACAAACAAAAATTGAAAAAAAAAAGAAATGAAAAACACCTCAGCGTCATGAGGCTCAACTCACC
TATCGCAATATGAGCTGATTTTTTTTTGAAAAACAGA
Found at i:26606762 original size:92 final size:88
Alignment explanation
Indices: 26606472--26606829 Score: 366
Period size: 91 Copynumber: 3.9 Consensus size: 88
26606462 AATAAAAATC
* * *
26606472 AATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-TTTTT
1 AATTGAAAATACCTCAGCGTGTGA--TGAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTT
* *
26606536 TTGACAAACATAAATTGAAAAAAAAAAGA
64 TTGA-AAACAGAAATTG---AAAAACAGA
* * * * *
26606565 AATTAAAAATATCTCAGCGTGTCATGAGGCTGAACTCACCTA-TCGCAATATGAGTTGATTTTTT
1 AATTGAAAATACCTCAGCGTGTGATGAGGCTCAACTCACC-ACTCGCAATATGAGCTGATTTTTT
*
26606629 GGAAAAACA-AAATTTGAAAAACAGA
65 TG-AAAACAGAAA-TTGAAAAACAGA
* * *
26606654 ATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGTAATATGAGCTGATTTTT
1 AATTGAAAATACCTCAGCGTGTGA-T-GAGGCTCAACTCACCACTCGCAATATGAGCTGA-TTTT
*
26606719 TTTGAAACACAGAAATTGAAGAACAGA
63 TTTGAAA-ACAGAAATTGAAAAACAGA
* * * *
26606746 AATGGAAAACACCTCAGCGTCT--TGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTT
1 AATTGAAAATACCTCAGCGTGTGATGAGGCTCAACTCACCACTCGCAATATGAGCTGA--TTTTT
26606809 TTGAAAGACAGAAATTGAAAA
64 TTGAAA-ACAGAAATTGAAAA
26606830 TACCTCAACG
Statistics
Matches: 227, Mismatches: 27, Indels: 26
0.81 0.10 0.09
Matches are distributed among these distances:
88 30 0.13
89 54 0.24
90 2 0.01
91 63 0.28
92 54 0.24
93 24 0.11
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.28
Consensus pattern (88 bp):
AATTGAAAATACCTCAGCGTGTGATGAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTT
GAAAACAGAAATTGAAAAACAGA
Found at i:26606883 original size:75 final size:75
Alignment explanation
Indices: 26606740--26607555 Score: 886
Period size: 75 Copynumber: 10.9 Consensus size: 75
26606730 GAAATTGAAG
* * * * *
26606740 AACAGAAATGGAAAACACCTC-A-GCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
1 AACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
26606803 TTTTTTTTGA-A
65 -TTTTTTTGACA
* *
26606814 AGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCAACTCTCGCAATATGAGTTGA
1 A-ACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
26606879 --TTTTTGACA
65 TTTTTTTGACA
* * * * * * *
26606888 AACAAAAATTGAAATTACCTCAGCATGTCCTGAGGCTTAACTCACCTATCGCAATGTGAGTTGAT
1 AACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
26606953 TTTTTTGAAA
66 TTTTTTGACA
* * * *
26606963 AACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCACTTCTTGCAATATGAGTTGA-
1 AACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
26607027 -GTTTTGACA
66 TTTTTTGACA
* * * * * *
26607036 AACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTATCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
*
26607099 TTTTTTTGAAA
65 TTTTTTTGACA
* * * *
26607110 AACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGGT
1 AACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
26607175 TTTTTTGACA
66 TTTTTTGACA
* * *
26607185 AACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
****
26607250 TTTGACAAACA
66 TTT-TTTGACA
* * *
26607261 GAGACAGAAATTGAAAATACCTCAGCACATGAGCC-GAGGCTCAACTCACCTCTTGCAATATGAG
1 -A-ACAGAAATTGAAAATACCTCA--ACGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAG
26607325 TTGATTTTTTTGAC-
61 TTGATTTTTTTGACA
* * * * * * *
26607339 AATAGAAATTGCAATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTTGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
26607404 TCTTTTGA-A
66 TTTTTTGACA
* * * *
26607413 AAGCAGAAATTGAAAATACCTCAACATGTGACCCGAGGCTCAACTCACCTCTTGCAACATGAGTT
1 AA-CAGAAATTGAAAATACCTCAAC--GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
26607478 GA--TTTTTGACA
63 GATTTTTTTGACA
* * * * * *
26607489 AACAGGAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCCCACAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
26607554 TT
66 TT
26607556 AAAAAACAGA
Statistics
Matches: 635, Mismatches: 82, Indels: 49
0.83 0.11 0.06
Matches are distributed among these distances:
71 34 0.05
72 1 0.00
73 124 0.20
74 76 0.12
75 203 0.32
76 58 0.09
77 76 0.12
78 21 0.03
79 2 0.00
80 38 0.06
81 2 0.00
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (75 bp):
AACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTTTGACA
Found at i:26606971 original size:148 final size:147
Alignment explanation
Indices: 26606740--26607555 Score: 983
Period size: 148 Copynumber: 5.4 Consensus size: 147
26606730 GAAATTGAAG
* ** * *
26606740 AACAGAAATGGAAAACACCTCAGC-GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
1 AACAGAAATTGAAATTACCTCAGCTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--
* * * *
26606804 TTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCAACTCTCGCAA
64 TTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTTGCAA
26606869 TATGAGTTGATTTTTGACA
129 TATGAGTTGATTTTTGACA
* * * *
26606888 AACAAAAATTGAAATTACCTCAGCATGTCCTGAGGCTTAACTCACCTATCGCAATGTGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGC-TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* * *
26606953 TTTTTTGAAAAACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCACTTCTTGCAAT
65 TTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTTGCAAT
*
26607018 ATGAGTTGAGTTTTGACA
130 ATGAGTTGATTTTTGACA
* * * *
26607036 AACAAAAATTGAAATTACCTCAGC-GTCTTGAGGTTCAACTCACCTATCGCAATATGAGTTGATT
1 AACAGAAATTGAAATTACCTCAGCTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-T
* * **
26607100 TTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCACAAT
65 TTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTTGCAAT
*
26607165 ATGAGTTGGTTTTTTTGACA
130 ATGAGTT-G-ATTTTTGACA
* * *
26607185 AACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGC-TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
**** * *
26607250 TTTGACAAACAGAGACAGAAATTGAAAATACCTCAGCACATGAGCC-GAGGCTCAACTCACCTCT
65 TTTTTTGAA-A-A-ACAGAAATTGAAAATACCTCA--ACGTG-TCCTGAGGCTCAACTCACCTCT
26607314 TGCAATATGAGTTGATTTTTTTGAC-
124 TGCAATATGAGTTGA--TTTTTGACA
* * * *
26607339 AATAGAAATTGCAATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTTGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGC-TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* * * *
26607404 TCTTTTGAAAAGCAGAAATTGAAAATACCTCAACATGTGACCCGAGGCTCAACTCACCTCTTGCA
65 TTTTTTGAAAAACAGAAATTGAAAATACCTCAAC--GTGTCCTGAGGCTCAACTCACCTCTTGCA
*
26607469 ACATGAGTTGATTTTTGACA
128 ATATGAGTTGATTTTTGACA
* * * * * *
26607489 AACAGGAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCCCACAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGC-TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
26607554 TT
65 TT
26607556 AAAAAACAGA
Statistics
Matches: 577, Mismatches: 72, Indels: 36
0.84 0.11 0.05
Matches are distributed among these distances:
146 34 0.06
147 66 0.11
148 123 0.21
149 40 0.07
150 98 0.17
151 88 0.15
152 2 0.00
153 22 0.04
154 62 0.11
155 40 0.07
156 2 0.00
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (147 bp):
AACAGAAATTGAAATTACCTCAGCTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
TTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTTGCAATA
TGAGTTGATTTTTGACA
Found at i:26607154 original size:222 final size:221
Alignment explanation
Indices: 26606734--26607555 Score: 924
Period size: 222 Copynumber: 3.7 Consensus size: 221
26606724 AACACAGAAA
* * * * *
26606734 TTGAAGAACAGAAATGGAAAACACCTCAGC--GTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACATGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* * * * *
26606797 GCTGATTTTTTTTTGA-AAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCAAC
66 GTTGA----TTTTTGACAA-ACAAAAATTGAAAATACCTC-A-GCGTCTCGAGGCTCAACTCACC
* * *
26606861 TCTCGCAATATGAGTTGA--TTTTTGACAAACAAAAATTGAAATTACCTCAGCATGTCCTGAGGC
124 TCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAATTACCTCAGCATGCCCTGAGGC
* * *
26606924 TTAACTCACCTATCGCAATGTGAGTTGATTTTT
189 TCAACTCACCTCTCGCAATATGAGTTGATTTTT
* * *
26606957 TTGAAAAACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCACTTCTTGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACATGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* * * * *
26607022 GTTGAGTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCACCTATCGCA
66 GTTGATTTTTGACAAACAAAAATTGAAAATACCTCAGCGTCTCGAGGCTCAACTCACCTCTCGCA
* *
26607087 ATATGAGTTGATTTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACT
131 ATATGAGTTGA-TTTTTTTGAAAAACAGAAATTGAAATTACCTCAGCATGCCCTGAGGCTCAACT
* *
26607152 CACCTCTCACAATATGAGTTGGTTTTT
195 CACCTCTCGCAATATGAGTTGATTTTT
* * * * *
26607179 TTGACAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACATGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
26607244 GTTGA-TTTTGACAAACAGAGACAGAAATTGAAAATACCTCAGC-ACATGAGCCGAGGCTCAACT
66 GTTGATTTTTGACAAAC----A-A-AAATTGAAAATACCTCAGCGTC-T----CGAGGCTCAACT
* * * *
26607307 CACCTCTTGCAATATGAGTTGATTTTTTTG-ACAATAGAAATTGCAATTACCTCAGCATGTCCC-
120 CACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAATTACCTCAGCATG-CCCT
* *
26607370 GAGGCTCAACTCACCTCTTGCAATATGAGTTGATTCTT
184 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* * * *
26607408 TTGAAAAGCAGAAATTGAAAATACCTCAACATGTGACCCGAGGCTCAACTCACCTCTTGCAACAT
1 TTGAAAAACAGAAATTGAAAATACCTCAACATGT--CCTGAGGCTCAACTCACCTCTCGCAATAT
** * *
26607473 GAGTTGATTTTTGACAAACAGGAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCC
64 GAGTTGATTTTTGACAAACAAAAATTGAAAATACCTCAGCGT--CTCGAGGCTCAACTCACCTCT
*
26607538 CACAATATGAGTTGATTT
127 CGCAATATGAGTTGATTT
26607556 AAAAAACAGA
Statistics
Matches: 512, Mismatches: 63, Indels: 47
0.82 0.10 0.08
Matches are distributed among these distances:
219 36 0.07
220 1 0.00
221 35 0.07
222 132 0.26
223 26 0.05
224 34 0.07
225 36 0.07
226 20 0.04
227 19 0.04
228 1 0.00
229 88 0.17
230 11 0.02
231 62 0.12
232 11 0.02
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (221 bp):
TTGAAAAACAGAAATTGAAAATACCTCAACATGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTGACAAACAAAAATTGAAAATACCTCAGCGTCTCGAGGCTCAACTCACCTCTCGCA
ATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAATTACCTCAGCATGCCCTGAGGCTCAACTC
ACCTCTCGCAATATGAGTTGATTTTT
Found at i:26614740 original size:20 final size:20
Alignment explanation
Indices: 26614683--26614742 Score: 59
Period size: 23 Copynumber: 2.9 Consensus size: 20
26614673 AATACTACAT
26614683 AAATATGTACAT-ATATAAA
1 AAATATGTACATAATATAAA
** *
26614702 AAATAAATACGTGATAATATTAA
1 AAATATGTAC---ATAATATAAA
26614725 AAATATGTACATAATATA
1 AAATATGTACATAATATA
26614743 GTGTAAAAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
19 8 0.26
20 7 0.23
22 2 0.06
23 14 0.45
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.32
Consensus pattern (20 bp):
AAATATGTACATAATATAAA
Found at i:26614750 original size:23 final size:23
Alignment explanation
Indices: 26614724--26614826 Score: 83
Period size: 24 Copynumber: 4.5 Consensus size: 23
26614714 GATAATATTA
* *
26614724 AAAATATGTACATAATATAGTGT
1 AAAATATATACATAATATAATGT
*
26614747 AAAAATACATACAT-ATATAAT-T
1 -AAAATATATACATAATATAATGT
26614769 -AAA-ATATACATAATA-ACATGT
1 AAAATATATACATAATATA-ATGT
*
26614790 AAAATATATATAATAATATAGTAT-T
1 AAAATATATA-CATAATATA--ATGT
26614815 AAAATATATACA
1 AAAATATATACA
26614827 AAAATATATA
Statistics
Matches: 64, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
19 8 0.12
20 8 0.12
21 1 0.02
22 4 0.06
23 11 0.17
24 18 0.28
25 12 0.19
26 2 0.03
ACGTcount: A:0.56, C:0.06, G:0.05, T:0.33
Consensus pattern (23 bp):
AAAATATATACATAATATAATGT
Found at i:26614762 original size:66 final size:66
Alignment explanation
Indices: 26614690--26614826 Score: 154
Period size: 67 Copynumber: 2.1 Consensus size: 66
26614680 CATAAATATG
* * * * *
26614690 TACATATATAA-AAAATAAATACGTGATAATAT-TAAAA-ATATGTACATAATATAGTGTAAAAA
1 TACATATATAATAAAAT--ATACATAATAACATGTAAAATATATATA-ATAATATAGTATAAAAA
26614752 TACA
63 TACA
*
26614756 TACATATATAATTAAAATATACATAATAACATGTAAAATATATATAATAATATAGTATTAAAATA
1 TACATATATAA-TAAAATATACATAATAACATGTAAAATATATATAATAATATAGTATAAAAATA
*
26614821 TA
65 CA
26614823 TACA
1 TACA
26614827 AAAATATATA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
66 22 0.37
67 27 0.45
68 11 0.18
ACGTcount: A:0.56, C:0.06, G:0.05, T:0.33
Consensus pattern (66 bp):
TACATATATAATAAAATATACATAATAACATGTAAAATATATATAATAATATAGTATAAAAATAC
A
Found at i:26614779 original size:19 final size:19
Alignment explanation
Indices: 26614732--26614806 Score: 62
Period size: 21 Copynumber: 3.6 Consensus size: 19
26614722 TAAAAATATG
26614732 TACATAATATAGTGTAAAAATACA
1 TACATAATA-A-TGT-AAAAT--A
26614756 TACATATATAAT-TAAAATA
1 TACATA-ATAATGTAAAATA
26614775 TACATAATAACATGTAAAATA
1 TACATAAT-A-ATGTAAAATA
*
26614796 TATATAATAAT
1 TACATAATAAT
26614807 ATAGTATTAA
Statistics
Matches: 46, Mismatches: 1, Indels: 13
0.77 0.02 0.22
Matches are distributed among these distances:
18 2 0.04
19 10 0.22
20 3 0.07
21 19 0.41
22 1 0.02
23 1 0.02
24 7 0.15
25 3 0.07
ACGTcount: A:0.56, C:0.07, G:0.04, T:0.33
Consensus pattern (19 bp):
TACATAATAATGTAAAATA
Found at i:26614822 original size:13 final size:11
Alignment explanation
Indices: 26614789--26614838 Score: 55
Period size: 12 Copynumber: 4.2 Consensus size: 11
26614779 TAATAACATG
26614789 TAAAATATATA
1 TAAAATATATA
26614800 TAATAATATAGTA
1 TAA-AATATA-TA
26614813 TTAAAATATATA
1 -TAAAATATATA
*
26614825 CAAAAATATATA
1 -TAAAATATATA
26614837 TA
1 TA
26614839 TATATACGTA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
11 4 0.12
12 18 0.55
13 8 0.24
14 3 0.09
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (11 bp):
TAAAATATATA
Found at i:26615409 original size:18 final size:18
Alignment explanation
Indices: 26615386--26615439 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
26615376 ACAAGTGGTG
26615386 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
*
26615404 GT-G-G--AGT-AGG-TA
1 GTGGAGCAAGTGTGGCTA
26615416 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
26615434 GTGGAG
1 GTGGAG
26615440 TTGGTGGTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 4 0.14
13 3 0.11
14 4 0.14
16 4 0.14
17 3 0.11
18 10 0.36
ACGTcount: A:0.22, C:0.07, G:0.48, T:0.22
Consensus pattern (18 bp):
GTGGAGCAAGTGTGGCTA
Found at i:26617157 original size:25 final size:25
Alignment explanation
Indices: 26617106--26617157 Score: 61
Period size: 24 Copynumber: 2.1 Consensus size: 25
26617096 TTATAAAAGA
* *
26617106 AATTATTTTAATTTCTCTTTTTTTT
1 AATTATTTTAATTTATCTTTTTATT
*
26617131 AATT-TTTTAATTTATGTTATTTATT
1 AATTATTTTAATTTATCTT-TTTATT
26617156 AA
1 AA
26617158 ATTCATTACT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 12 0.52
25 11 0.48
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (25 bp):
AATTATTTTAATTTATCTTTTTATT
Found at i:26623545 original size:18 final size:19
Alignment explanation
Indices: 26623515--26623552 Score: 69
Period size: 18 Copynumber: 2.1 Consensus size: 19
26623505 ATAAAAAAGT
26623515 ATAATTTTATAATTTTTTA
1 ATAATTTTATAATTTTTTA
26623534 ATAATTTT-TAATTTTTTA
1 ATAATTTTATAATTTTTTA
26623552 A
1 A
26623553 ATTTTAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (19 bp):
ATAATTTTATAATTTTTTA
Found at i:26626955 original size:41 final size:41
Alignment explanation
Indices: 26626910--26626990 Score: 162
Period size: 41 Copynumber: 2.0 Consensus size: 41
26626900 CATGTAAGTT
26626910 AATCTATTTATTTTTAAATAAAAATAGTTTAATAAAATTAA
1 AATCTATTTATTTTTAAATAAAAATAGTTTAATAAAATTAA
26626951 AATCTATTTATTTTTAAATAAAAATAGTTTAATAAAATTA
1 AATCTATTTATTTTTAAATAAAAATAGTTTAATAAAATTA
26626991 TCTTAAAATA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (41 bp):
AATCTATTTATTTTTAAATAAAAATAGTTTAATAAAATTAA
Found at i:26640921 original size:13 final size:14
Alignment explanation
Indices: 26640893--26640926 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
26640883 TAATATATCG
*
26640893 ATTATTTTTATGTT
1 ATTATATTTATGTT
26640907 ATTATATTT-TGTT
1 ATTATATTTATGTT
26640920 ATTATAT
1 ATTATAT
26640927 GAGATGTGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (14 bp):
ATTATATTTATGTT
Found at i:26641190 original size:50 final size:50
Alignment explanation
Indices: 26641075--26641315 Score: 200
Period size: 50 Copynumber: 4.8 Consensus size: 50
26641065 GTGAGAACAT
* *** * **
26641075 TGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGATGGTTTTAGGTCATG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAG--TTAGGTCACA
* *
26641127 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGTCACA
* * * * * *
26641177 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTC-GAAAACTTTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTAC-CAG-ATAGTTAGGTCACA
* * * * *
26641228 CGTGTAGTACTAAGTGTAGGCTATTATGTGTA-CAGATTGTT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGTCACA
* * * * *
26641276 TGTATAGTACTAAGTGCAAGCTATTATGCGTACCAAATAG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAG
26641316 CTTCGGTTAC
Statistics
Matches: 151, Mismatches: 34, Indels: 11
0.77 0.17 0.06
Matches are distributed among these distances:
48 31 0.21
49 9 0.06
50 40 0.26
51 37 0.25
52 34 0.23
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGTCACA
Found at i:26641299 original size:48 final size:49
Alignment explanation
Indices: 26641127--26641310 Score: 183
Period size: 48 Copynumber: 3.7 Consensus size: 49
26641117 TTAGGTCATG
* * *
26641127 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATTGTT-GGTCGCA
* * * * *
26641177 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCGAAAACT-TTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTAC-C--AGATTGTTGGTCGCA
* * * *
26641228 CGTGTAGTACTAAGTGTAGGCTATTATGTGTA-CAGATTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATTGTTGGTCGCA
* * *
26641276 TGTATAGTACTAAGTGCAAGCTATTATGCGTACCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCA
26641311 AATAGCTTCG
Statistics
Matches: 107, Mismatches: 22, Indels: 11
0.76 0.16 0.08
Matches are distributed among these distances:
47 3 0.03
48 33 0.31
49 3 0.03
50 31 0.29
51 33 0.31
52 2 0.02
53 2 0.02
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.31
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATTGTTGGTCGCA
Found at i:26641304 original size:99 final size:101
Alignment explanation
Indices: 26641128--26641308 Score: 285
Period size: 99 Copynumber: 1.8 Consensus size: 101
26641118 TAGGTCATGT
*
26641128 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGCATGTGTAGTACTAAGTG
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGCATGTATAGTACTAAGTG
*
26641193 CAGGCTACTATGCGTACTCGAAAACTTTGATCACGC
66 CAAGCTACTATGCGTACTCGAAAACTTTGATCACGC
* * * *
26641229 GTGTAGTACTAAGTGTAGGCTATTATGTGTA-CAGATTGTT-GGTCGCATGTATAGTACTAAGTG
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGCATGTATAGTACTAAGTG
*
26641292 CAAGCTATTATGCGTAC
66 CAAGCTACTATGCGTAC
26641309 CAAATAGCTT
Statistics
Matches: 73, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
99 37 0.51
100 8 0.11
101 28 0.38
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.31
Consensus pattern (101 bp):
GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGCATGTATAGTACTAAGTG
CAAGCTACTATGCGTACTCGAAAACTTTGATCACGC
Found at i:26641534 original size:16 final size:15
Alignment explanation
Indices: 26641513--26641542 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
26641503 GAATAGAGTA
26641513 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
26641529 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
26641543 TAAAACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:26643595 original size:40 final size:38
Alignment explanation
Indices: 26643466--26643582 Score: 137
Period size: 40 Copynumber: 3.0 Consensus size: 38
26643456 CCTTCGAAAT
* **
26643466 TTAACCGGATATAGCT-ACTCGTTCAAATGCCTTCGGTAC
1 TTAACCGGATTTAG-TAACTCGCACAAATGCCTTCGG-AC
* *
26643505 ATAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAC
1 TTA-ACCGGATTTAGTAACTCGCACAAATGCCTTC-GGAC
26643545 TTAACTCGGATTTAGTAACTCGCACAAATGCCTTCGGA
1 TTAAC-CGGATTTAGTAACTCGCACAAATGCCTTCGGA
26643583 TCTTGGTCCG
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
39 7 0.10
40 58 0.87
41 2 0.03
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (38 bp):
TTAACCGGATTTAGTAACTCGCACAAATGCCTTCGGAC
Found at i:26643634 original size:40 final size:40
Alignment explanation
Indices: 26643489--26643634 Score: 170
Period size: 40 Copynumber: 3.6 Consensus size: 40
26643479 GCTACTCGTT
* *
26643489 CAAATGCCTTCGGTACATAGCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
26643529 CAAATGCCTTCGGGACTTAACTCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
26643569 CAAATGCCTTC-GGATCTTGGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
26643610 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
26643635 CATCATTCAA
Statistics
Matches: 89, Mismatches: 14, Indels: 6
0.82 0.13 0.06
Matches are distributed among these distances:
39 3 0.03
40 75 0.84
41 11 0.12
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:26647347 original size:23 final size:23
Alignment explanation
Indices: 26647320--26647367 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
26647310 TCTTGACATT
26647320 TCTCCGTCCATTCGAACTTAACA
1 TCTCCGTCCATTCGAACTTAACA
26647343 TCTCCGTCCATTCGAACTTAACA
1 TCTCCGTCCATTCGAACTTAACA
26647366 TC
1 TC
26647368 CTTTTGAAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.25, C:0.35, G:0.08, T:0.31
Consensus pattern (23 bp):
TCTCCGTCCATTCGAACTTAACA
Found at i:26651572 original size:40 final size:40
Alignment explanation
Indices: 26651535--26651719 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
26651525 GCTACTCGTT
* *
26651535 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
26651575 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
26651615 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
26651655 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
26651696 CAAA-GCCTTC-GGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
26651720 CATCATTCAA
Statistics
Matches: 133, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
39 13 0.10
40 110 0.83
41 10 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:26654773 original size:19 final size:19
Alignment explanation
Indices: 26654749--26654787 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
26654739 GGTTATTTTG
26654749 TTATATATCATAATTGATT
1 TTATATATCATAATTGATT
26654768 TTATATATCATAATTGATT
1 TTATATATCATAATTGATT
26654787 T
1 T
26654788 GGCCTAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.36, C:0.05, G:0.05, T:0.54
Consensus pattern (19 bp):
TTATATATCATAATTGATT
Found at i:26658510 original size:51 final size:51
Alignment explanation
Indices: 26658429--26658531 Score: 179
Period size: 51 Copynumber: 2.0 Consensus size: 51
26658419 GTGTCAACTA
* *
26658429 AAGTATGTGCGTGTGGGGGGTAACATAGAAAACTTGTTTAATTGTTTCTAC
1 AAGTATGTGCGTATGGGGGGTAACATAGAAAACTTGTTTAATTATTTCTAC
*
26658480 AAGTGTGTGCGTATGGGGGGTAACATAGAAAACTTGTTTAATTATTTCTAC
1 AAGTATGTGCGTATGGGGGGTAACATAGAAAACTTGTTTAATTATTTCTAC
26658531 A
1 A
26658532 TTTTTTTCTT
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.29, C:0.10, G:0.26, T:0.35
Consensus pattern (51 bp):
AAGTATGTGCGTATGGGGGGTAACATAGAAAACTTGTTTAATTATTTCTAC
Found at i:26671175 original size:29 final size:29
Alignment explanation
Indices: 26671142--26671201 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
26671132 AGGTATATAC
* *
26671142 GTAAAACTCATAAGTAATGATCTCGATAT
1 GTAAAACTCATAAGTAATAAGCTCGATAT
26671171 GTAAAACTCATAAGTAATAAGCTCGATAT
1 GTAAAACTCATAAGTAATAAGCTCGATAT
26671200 GT
1 GT
26671202 GATGAACTCT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.42, C:0.13, G:0.15, T:0.30
Consensus pattern (29 bp):
GTAAAACTCATAAGTAATAAGCTCGATAT
Found at i:26673544 original size:17 final size:17
Alignment explanation
Indices: 26673524--26673557 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
26673514 AGGTTTAGGT
26673524 TTAAAAATTTTAATTAA
1 TTAAAAATTTTAATTAA
*
26673541 TTAAAATTTTTAATTAA
1 TTAAAAATTTTAATTAA
26673558 AAAATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TTAAAAATTTTAATTAA
Found at i:26674717 original size:38 final size:38
Alignment explanation
Indices: 26674666--26674953 Score: 200
Period size: 38 Copynumber: 6.8 Consensus size: 38
26674656 TTTCAAATTA
* *
26674666 ACATGTATAACCGTGGCATATCCACTTAGCACCAAGTT
1 ACATGTTTAACCGTGGCATATCCACTTAGCACCACGTT
*
26674704 ACATGTTTAACCGTGGTC-TATCCACTTAGCATCACGTTAAT
1 ACATGTTTAACCGTGG-CATATCCACTTAGCACCACG-T--T
*
26674745 GAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTT
1 --A-C-ATGT-T-TAACCGTGGCATATCCACTTAGCACCACGTT
* *
26674789 ACATGTTTAACCGTGGTATATCCACTTAGCACCATGTTAAT
1 ACATGTTTAACCGTGGCATATCCACTTAGCACCACG-T--T
* *
26674830 GAATCAATATATGTAACCGTGGCATATTCACTTAGCACCACGTT
1 --A-C-ATGT-T-TAACCGTGGCATATCCACTTAGCACCACGTT
* *
26674874 ACATGTATCAATATGTGTAATCGTGGAATATCCACTTAGCACCACGTT
1 ACATG--------T-T-TAACCGTGGCATATCCACTTAGCACCACGTT
* *
26674922 ACATGTATAACCGTGGTATATCCACTTAGCAC
1 ACATGTTTAACCGTGGCATATCCACTTAGCAC
26674954 TACATTTTTT
Statistics
Matches: 202, Mismatches: 20, Indels: 56
0.73 0.07 0.20
Matches are distributed among these distances:
38 81 0.40
39 4 0.02
40 6 0.03
41 4 0.02
42 2 0.01
43 2 0.01
44 4 0.02
45 6 0.03
46 5 0.02
47 52 0.26
48 36 0.18
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.30
Consensus pattern (38 bp):
ACATGTTTAACCGTGGCATATCCACTTAGCACCACGTT
Found at i:26674780 original size:47 final size:47
Alignment explanation
Indices: 26674711--26674922 Score: 255
Period size: 47 Copynumber: 4.7 Consensus size: 47
26674701 GTTACATGTT
*
26674711 TAACCGTGGTC-TATCCACTTAGCATCACGTTAATGAATCAATATATG
1 TAACCGTGG-CATATCCACTTAGCACCACGTTAATGAATCAATATATG
*
26674758 TAACCGTGGCATATCCACTTAGCACCACG-T--T--A-C-ATGT-T-
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
* *
26674796 TAACCGTGGTATATCCACTTAGCACCATGTTAATGAATCAATATATG
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
* * *
26674843 TAACCGTGGCATATTCACTTAGCACCACGTTACATGTATCAATATGTG
1 TAACCGTGGCATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
* *
26674891 TAATCGTGGAATATCCACTTAGCACCACGTTA
1 TAACCGTGGCATATCCACTTAGCACCACGTTA
26674923 CATGTATAAC
Statistics
Matches: 141, Mismatches: 13, Indels: 21
0.81 0.07 0.12
Matches are distributed among these distances:
38 27 0.19
39 2 0.01
40 3 0.02
41 2 0.01
42 1 0.01
43 1 0.01
44 2 0.01
45 3 0.02
46 3 0.02
47 55 0.39
48 42 0.30
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.31
Consensus pattern (47 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
Found at i:26674816 original size:85 final size:85
Alignment explanation
Indices: 26674673--26674879 Score: 369
Period size: 85 Copynumber: 2.4 Consensus size: 85
26674663 TTAACATGTA
* * *
26674673 TAACCGTGGCATATCCACTTAGCACCAAGTTACATGTTTAACCGTGGTCTATCCACTTAGCATCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
26674738 CGTTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
26674758 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
*
26674823 TGTTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
*
26674843 TAACCGTGGCATATTCACTTAGCACCACGTTACATGT
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGT
26674880 ATCAATATGT
Statistics
Matches: 117, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
85 117 1.00
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.30
Consensus pattern (85 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
CGTTAATGAATCAATATATG
Found at i:26674899 original size:48 final size:48
Alignment explanation
Indices: 26674791--26674929 Score: 199
Period size: 48 Copynumber: 2.9 Consensus size: 48
26674781 ACCACGTTAC
* * * *
26674791 ATGTTTAACCGTGGTATATCCACTTAGCACCATGTTA-ATGAATCAAT
1 ATGTGTAACCGTGGAATATCCACTTAGCACCACGTTACATGTATCAAT
* * *
26674838 ATATGTAACCGTGGCATATTCACTTAGCACCACGTTACATGTATCAAT
1 ATGTGTAACCGTGGAATATCCACTTAGCACCACGTTACATGTATCAAT
*
26674886 ATGTGTAATCGTGGAATATCCACTTAGCACCACGTTACATGTAT
1 ATGTGTAACCGTGGAATATCCACTTAGCACCACGTTACATGTAT
26674930 AACCGTGGTA
Statistics
Matches: 81, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
47 32 0.40
48 49 0.60
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (48 bp):
ATGTGTAACCGTGGAATATCCACTTAGCACCACGTTACATGTATCAAT
Found at i:26674912 original size:133 final size:132
Alignment explanation
Indices: 26674711--26674953 Score: 398
Period size: 133 Copynumber: 1.8 Consensus size: 132
26674701 GTTACATGTT
* *
26674711 TAACCGTGGTCTATCCACTTAGCATCACGTTAATGAATCAATATATGTAACCGTGGCATATCCAC
1 TAACCGTGGTCTATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGGAATATCCAC
*
26674776 TTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCATGTTAATGAATCAATATA
66 TTAGCACCACGTTACATGTATAACCGTGGTATATCCACTTAGCACCATGTTAATGAATCAATATA
26674841 TG
131 TG
* * * *
26674843 TAACCGTGG-CATATTCACTTAGCACCACGTTACATGTATCAATATGTGTAATCGTGGAATATCC
1 TAACCGTGGTC-TATCCACTTAGCACCACGTTA-ATGAATCAATATATGTAACCGTGGAATATCC
26674907 ACTTAGCACCACGTTACATGTATAACCGTGGTATATCCACTTAGCAC
64 ACTTAGCACCACGTTACATGTATAACCGTGGTATATCCACTTAGCAC
26674954 TACATTTTTT
Statistics
Matches: 102, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
131 1 0.01
132 28 0.27
133 73 0.72
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.30
Consensus pattern (132 bp):
TAACCGTGGTCTATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGGAATATCCAC
TTAGCACCACGTTACATGTATAACCGTGGTATATCCACTTAGCACCATGTTAATGAATCAATATA
TG
Found at i:26675358 original size:13 final size:13
Alignment explanation
Indices: 26675340--26675368 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
26675330 GGTTGTTTAT
26675340 TAAACTAATTAAC
1 TAAACTAATTAAC
26675353 TAAACTAATTAAC
1 TAAACTAATTAAC
26675366 TAA
1 TAA
26675369 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:26676162 original size:28 final size:28
Alignment explanation
Indices: 26676122--26676177 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
26676112 TCATAATTAG
*
26676122 GGTGTTTATATAGGCTTTGTATTGGCTT
1 GGTGTTTATATAGGCTTTGGATTGGCTT
26676150 GGTGTTTATATAGGCTTTGGATTGGCTT
1 GGTGTTTATATAGGCTTTGGATTGGCTT
26676178 TCTTCTTCCC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.14, C:0.07, G:0.30, T:0.48
Consensus pattern (28 bp):
GGTGTTTATATAGGCTTTGGATTGGCTT
Found at i:26678327 original size:6 final size:6
Alignment explanation
Indices: 26678318--26678361 Score: 56
Period size: 6 Copynumber: 7.5 Consensus size: 6
26678308 AATAAAATTG
*
26678318 AAATGA AAATAA AAATAA AAATAA AAA-AA TAAA-AA AAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA -AAATAA AAATAA AAA
26678362 GATAAGAGGG
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
5 5 0.14
6 30 0.86
ACGTcount: A:0.84, C:0.00, G:0.02, T:0.14
Consensus pattern (6 bp):
AAATAA
Found at i:26678343 original size:17 final size:17
Alignment explanation
Indices: 26678334--26678366 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
26678324 AAATAAAAAT
26678334 AAAAATAAAAAAATAAA
1 AAAAATAAAAAAATAAA
*
26678351 AAAAATAAAAAGATAA
1 AAAAATAAAAAAATAA
26678367 GAGGGTTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.85, C:0.00, G:0.03, T:0.12
Consensus pattern (17 bp):
AAAAATAAAAAAATAAA
Found at i:26686204 original size:50 final size:52
Alignment explanation
Indices: 26686088--26686207 Score: 163
Period size: 50 Copynumber: 2.3 Consensus size: 52
26686078 TGAATAAATG
* * **
26686088 AGTTACTTAATGCATGACTTAATTTAATGATGCAAACTTTAACTAACATGGG
1 AGTTACATAATGCATGACATAATTTAATGATGCAAACTTTAACTAACATGAA
* * *
26686140 AGTTTCATAGTGCATGTCATAATTT-ATGATGCAAAC-TTAACTAACATGAA
1 AGTTACATAATGCATGACATAATTTAATGATGCAAACTTTAACTAACATGAA
26686190 AGTTACATAATGCATGAC
1 AGTTACATAATGCATGAC
26686208 TTTATTAAAT
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
50 27 0.47
51 11 0.19
52 20 0.34
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.33
Consensus pattern (52 bp):
AGTTACATAATGCATGACATAATTTAATGATGCAAACTTTAACTAACATGAA
Found at i:26688189 original size:18 final size:19
Alignment explanation
Indices: 26688162--26688225 Score: 60
Period size: 19 Copynumber: 3.4 Consensus size: 19
26688152 TAAGTAATTA
26688162 AGTTGTTTTAATTTTATTT
1 AGTTGTTTTAATTTTATTT
* * *
26688181 AGTTG-TTTAA-ATAAATT
1 AGTTGTTTTAATTTTATTT
* *
26688198 CGATTGTTTTAATTTTGTTT
1 AG-TTGTTTTAATTTTATTT
26688218 AGTTGTTT
1 AGTTGTTT
26688226 AAATAAATTC
Statistics
Matches: 33, Mismatches: 9, Indels: 6
0.69 0.19 0.12
Matches are distributed among these distances:
17 5 0.15
18 8 0.24
19 16 0.48
20 4 0.12
ACGTcount: A:0.23, C:0.02, G:0.14, T:0.61
Consensus pattern (19 bp):
AGTTGTTTTAATTTTATTT
Found at i:26688207 original size:37 final size:37
Alignment explanation
Indices: 26688164--26688236 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
26688154 AGTAATTAAG
26688164 TTGTTTTAATTTTATTTAGTTGTTTAAATAAATTCGA
1 TTGTTTTAATTTTATTTAGTTGTTTAAATAAATTCGA
*
26688201 TTGTTTTAATTTTGTTTAGTTGTTTAAATAAATTCG
1 TTGTTTTAATTTTATTTAGTTGTTTAAATAAATTCG
26688237 GCAATTAATA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.27, C:0.03, G:0.12, T:0.58
Consensus pattern (37 bp):
TTGTTTTAATTTTATTTAGTTGTTTAAATAAATTCGA
Found at i:26689430 original size:26 final size:25
Alignment explanation
Indices: 26689392--26689449 Score: 89
Period size: 26 Copynumber: 2.3 Consensus size: 25
26689382 TGTAATTTGA
26689392 TAAAAAATTGTAAAAAAAATTCCAT
1 TAAAAAATTGTAAAAAAAATTCCAT
* *
26689417 TAAAATAATTGTAAAAAAAATTTCGT
1 TAAAA-AATTGTAAAAAAAATTCCAT
26689443 TAAAAAA
1 TAAAAAA
26689450 ATCAGTATCT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 7 0.23
26 23 0.77
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.29
Consensus pattern (25 bp):
TAAAAAATTGTAAAAAAAATTCCAT
Found at i:26691502 original size:11 final size:12
Alignment explanation
Indices: 26691460--26691513 Score: 58
Period size: 12 Copynumber: 4.5 Consensus size: 12
26691450 AAGAGTTTGT
26691460 AGAAAAAGTA-AA
1 AGAAAAAG-ACAA
26691472 AGAAAAAGAACAA
1 AGAAAAAG-ACAA
* *
26691485 GGAAAAA-AGAA
1 AGAAAAAGACAA
26691496 AGAAAAAGACAA
1 AGAAAAAGACAA
26691508 AGAAAA
1 AGAAAA
26691514 GAAAATCGAG
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
11 9 0.26
12 18 0.51
13 8 0.23
ACGTcount: A:0.76, C:0.04, G:0.19, T:0.02
Consensus pattern (12 bp):
AGAAAAAGACAA
Found at i:26691503 original size:36 final size:35
Alignment explanation
Indices: 26691460--26691537 Score: 90
Period size: 36 Copynumber: 2.2 Consensus size: 35
26691450 AAGAGTTTGT
26691460 AGAAAAAGTA-AAAGAAAAAGAACAA-G-GAAAAAAGAA
1 AGAAAAAG-ACAAAG-AAAAGAA-AACGAGAAAAAA-AA
26691496 AGAAAAAGACAAAGAAAAGAAAATCGAGAAAAAAAA
1 AGAAAAAGACAAAGAAAAGAAAA-CGAGAAAAAAAA
26691532 AGAAAA
1 AGAAAA
26691538 GGTGAGAAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
34 2 0.05
35 8 0.21
36 21 0.55
37 7 0.18
ACGTcount: A:0.76, C:0.04, G:0.18, T:0.03
Consensus pattern (35 bp):
AGAAAAAGACAAAGAAAAGAAAACGAGAAAAAAAA
Found at i:26693905 original size:43 final size:44
Alignment explanation
Indices: 26693810--26693964 Score: 149
Period size: 43 Copynumber: 3.6 Consensus size: 44
26693800 ATTGAGATGC
* * *
26693810 GATTACATGTGAGACCATGTCTGGGACATTGGCAT-TGTATTGT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCTGTATTCT
26693853 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCAT-TATTCT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATC-TGTATTCT
* * * * * *
26693897 -ATTTCGTGTAAGACCCTATCTAGGACAGTGGCATC-G-ATATGT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCTGTAT-TCT
* * *
26693939 GATAACATGTAAGACCATATCTGGGA
1 GATTACGTGTAAGACCATGTCTGGGA
26693965 TATAACATTG
Statistics
Matches: 93, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
41 2 0.02
42 2 0.02
43 83 0.89
44 5 0.05
45 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.32
Consensus pattern (44 bp):
GATTACGTGTAAGACCATGTCTGGGACATTGGCATCTGTATTCT
Found at i:26698521 original size:44 final size:40
Alignment explanation
Indices: 26698401--26698544 Score: 126
Period size: 44 Copynumber: 3.4 Consensus size: 40
26698391 CTAGATGTGA
* * *
26698401 TCTTACATGTAATCAAATATCGATGCCACAGTCCCAGACAGGG
1 TCTTACACGAAATC-AA-ATCGATGCCAC-GTCCCAGACATGG
* * * *
26698444 TCTTACACGAAGTCAAATATGATGCCGATGTCCCTGACATGG
1 TCTTACACGAAATCAAAT-CGATGCC-ACGTCCCAGACATGG
* *
26698486 TCTTACATGTAAATCATAAGTCGATGCCAACGTCCCAGACGTGG
1 TCTTACACG-AAATCA-AA-TCGATGCC-ACGTCCCAGACATGG
26698530 TCTTACACGAAATCA
1 TCTTACACGAAATCA
26698545 CATATCGAAA
Statistics
Matches: 81, Mismatches: 15, Indels: 10
0.76 0.14 0.09
Matches are distributed among these distances:
41 2 0.02
42 27 0.33
43 23 0.28
44 28 0.35
45 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (40 bp):
TCTTACACGAAATCAAATCGATGCCACGTCCCAGACATGG
Found at i:26711774 original size:46 final size:48
Alignment explanation
Indices: 26711591--26711901 Score: 213
Period size: 46 Copynumber: 6.6 Consensus size: 48
26711581 GTATAATGTT
* * * * *
26711591 GATGCCATGTACCAGACATGGTCTTACACTAGCTCATCCA--TC-AAGTC
1 GATG-CATGTCCCAGACATGGTCTTACACTGGCTC-TACATCTCGTAGCC
* * * *
26711638 GATGCCATTTCCCAGACATGGTCTTACACTAGCTCTCACATATCCGT-GCT
1 GATG-CATGTCCCAGACATGGTCTTACACTGGCTCT-ACATCT-CGTAGCC
* *
26711688 GATGCCATGTCCCAGACATGGTTTTACACT-G-AC-ACATCTCGTAGCC
1 GATG-CATGTCCCAGACATGGTCTTACACTGGCTCTACATCTCGTAGCC
*
26711734 GATGCATGTCCCAAACAT-GTCTTACACTGGCT-TACATCTCG-AGGCC
1 GATGCATGTCCCAGACATGGTCTTACACTGGCTCTACATCTCGTA-GCC
* * * * *
26711780 GATGCATGTCCGAGACAT-GTCTTACATTAGCTCT-CGTCTC-AATGCC
1 GATGCATGTCCCAGACATGGTCTTACACTGGCTCTACATCTCGTA-GCC
* * * * * *
26711826 GATTCCATGTCCCAGAAATGGTCTTACATTGGCTCT-CATAAT-GTGGCT
1 GA-TGCATGTCCCAGACATGGTCTTACACTGGCTCTACAT-CTCGTAGCC
26711874 GATGCATGTCCCAGACAT-GTCTTACACT
1 GATGCATGTCCCAGACATGGTCTTACACT
26711902 AGCACACAAA
Statistics
Matches: 216, Mismatches: 32, Indels: 33
0.77 0.11 0.12
Matches are distributed among these distances:
44 9 0.04
45 18 0.08
46 71 0.33
47 63 0.29
48 22 0.10
49 3 0.01
50 30 0.14
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (48 bp):
GATGCATGTCCCAGACATGGTCTTACACTGGCTCTACATCTCGTAGCC
Found at i:26721140 original size:9 final size:9
Alignment explanation
Indices: 26721128--26721184 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
26721118 TTTGATAAAC
26721128 ATGATATGT
1 ATGATATGT
*
26721137 ATGATATGCAC
1 ATGATATG--T
*
26721148 ATGACATGT
1 ATGATATGT
*
26721157 ATGATATGCAC
1 ATGATATG--T
26721168 ATGATATGT
1 ATGATATGT
26721177 ATGATATG
1 ATGATATG
26721185 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:26721151 original size:20 final size:20
Alignment explanation
Indices: 26721126--26721188 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
26721116 ATTTTGATAA
26721126 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
26721146 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
26721166 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
26721186 ACA
1 ACA
26721189 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:26721270 original size:24 final size:24
Alignment explanation
Indices: 26721243--26721322 Score: 119
Period size: 24 Copynumber: 3.3 Consensus size: 24
26721233 AGGAAGTGCG
26721243 AAGGGCTTATGCCCTAGTTATTAA
1 AAGGGCTTATGCCCTAGTTATTAA
26721267 AAGGGCTTATGCCCTAGTTATTAAAA
1 AAGGGCTTATGCCCTAGTTATT--AA
26721293 AAGGGCTT-TGCCC-AGTTATTAA
1 AAGGGCTTATGCCCTAGTTATTAA
26721315 AAGAGGCT
1 AAG-GGCT
26721323 AGGCCTCCAG
Statistics
Matches: 53, Mismatches: 0, Indels: 7
0.88 0.00 0.12
Matches are distributed among these distances:
22 5 0.09
23 4 0.08
24 29 0.55
25 5 0.09
26 10 0.19
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (24 bp):
AAGGGCTTATGCCCTAGTTATTAA
Found at i:26721592 original size:31 final size:31
Alignment explanation
Indices: 26721527--26721592 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
26721517 ACCGTTTACA
* *
26721527 GAAAAGGCTTCGGCCGAGTAATATGAAATGT
1 GAAAAGGCTTCGGCCCAGTAATATGAAATAT
** *
26721558 GAAAAGGCTTCGGCCCAGTGTTATGAATTAT
1 GAAAAGGCTTCGGCCCAGTAATATGAAATAT
26721589 GAAA
1 GAAA
26721593 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.35, C:0.14, G:0.27, T:0.24
Consensus pattern (31 bp):
GAAAAGGCTTCGGCCCAGTAATATGAAATAT
Found at i:26729117 original size:25 final size:25
Alignment explanation
Indices: 26729088--26729135 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
26729078 TTATAATATG
* * *
26729088 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
26729113 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
26729136 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:26729186 original size:9 final size:9
Alignment explanation
Indices: 26729174--26729230 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
26729164 TTTGATAAAC
26729174 ATGATATGT
1 ATGATATGT
*
26729183 ATGATATGCAC
1 ATGATATG--T
*
26729194 ATGACATGT
1 ATGATATGT
*
26729203 ATGATATGCAC
1 ATGATATG--T
26729214 ATGATATGT
1 ATGATATGT
26729223 ATGATATG
1 ATGATATG
26729231 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:26729197 original size:20 final size:20
Alignment explanation
Indices: 26729172--26729234 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
26729162 ATTTTGATAA
26729172 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
26729192 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
26729212 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
26729232 ACA
1 ACA
26729235 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:26729351 original size:25 final size:26
Alignment explanation
Indices: 26729288--26729363 Score: 131
Period size: 24 Copynumber: 3.0 Consensus size: 26
26729278 GAGGAAGTGC
26729288 AAAAGGGCTTATGCCCCAGTTATT--
1 AAAAGGGCTTATGCCCCAGTTATTAA
26729312 AAAAGGGCTTATGCCCCAGTTATTAA
1 AAAAGGGCTTATGCCCCAGTTATTAA
26729338 AAAAGGGCTT-TGCCCCAGTTATTAA
1 AAAAGGGCTTATGCCCCAGTTATTAA
26729363 A
1 A
26729364 GAGGCTAGGC
Statistics
Matches: 50, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
24 24 0.48
25 16 0.32
26 10 0.20
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTATTAA
Found at i:26729380 original size:49 final size:50
Alignment explanation
Indices: 26729288--26729383 Score: 144
Period size: 49 Copynumber: 1.9 Consensus size: 50
26729278 GAGGAAGTGC
*
26729288 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAA
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTAGGCCCCAGTTATTAA
26729338 AAAAGGGCTT-TGCCCCAGTTATT-AAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAG-GGCTTAGGCC-CCAGTTAT
26729384 ATGATAAAGC
Statistics
Matches: 43, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
48 9 0.21
49 24 0.56
50 10 0.23
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (50 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTAGGCCCCAGTTATTAA
Found at i:26729610 original size:31 final size:31
Alignment explanation
Indices: 26729575--26729638 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
26729565 CGTTTACAGT
26729575 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
26729606 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
26729637 AA
1 AA
26729639 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:26737318 original size:20 final size:20
Alignment explanation
Indices: 26737257--26737310 Score: 90
Period size: 20 Copynumber: 2.6 Consensus size: 20
26737247 TAACAGATAT
26737257 TATGATGATGCACATGACATG
1 TATGAT-ATGCACATGACATG
*
26737278 TATGATATGCACATGATATG
1 TATGATATGCACATGACATG
26737298 TATGATATGCACA
1 TATGATATGCACA
26737311 CGAGATGTTC
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
20 26 0.81
21 6 0.19
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.31
Consensus pattern (20 bp):
TATGATATGCACATGACATG
Found at i:26737392 original size:24 final size:25
Alignment explanation
Indices: 26737365--26737421 Score: 98
Period size: 24 Copynumber: 2.3 Consensus size: 25
26737355 AGGAAGTAGC
26737365 AAGGGCTTATGCCCCAGGTATT-AA
1 AAGGGCTTATGCCCCAGGTATTAAA
*
26737389 AAGGGCTTATGCCCCAGTTATTAAA
1 AAGGGCTTATGCCCCAGGTATTAAA
26737414 AAGGGCTT
1 AAGGGCTT
26737422 CGCCCAGTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
24 21 0.68
25 10 0.32
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (25 bp):
AAGGGCTTATGCCCCAGGTATTAAA
Found at i:26737426 original size:24 final size:24
Alignment explanation
Indices: 26737365--26737435 Score: 94
Period size: 24 Copynumber: 3.0 Consensus size: 24
26737355 AGGAAGTAGC
26737365 AAGGGCTTATGCCCCAGGTATT-AA
1 AAGGGCTTATGCCCCA-GTATTAAA
26737389 AAGGGCTTATGCCCCAGTTATTAAA
1 AAGGGCTTATGCCCCAG-TATTAAA
*
26737414 AAGGGCTT-CG-CCCAGTATTAAA
1 AAGGGCTTATGCCCCAGTATTAAA
26737436 GAGGCTAGGC
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
22 7 0.16
23 6 0.14
24 21 0.48
25 10 0.23
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (24 bp):
AAGGGCTTATGCCCCAGTATTAAA
Found at i:26748197 original size:9 final size:9
Alignment explanation
Indices: 26748183--26748239 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
26748173 TTTTGATAAC
26748183 ATGATATGT
1 ATGATATGT
*
26748192 ATGATATGCAC
1 ATGATATG--T
*
26748203 ATGACATGT
1 ATGATATGT
*
26748212 ATGATATGCAC
1 ATGATATG--T
26748223 ATGATATGT
1 ATGATATGT
26748232 ATGATATG
1 ATGATATG
26748240 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:26748206 original size:20 final size:20
Alignment explanation
Indices: 26748181--26748243 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
26748171 GATTTTGATA
26748181 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
26748201 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
26748221 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
26748241 ACA
1 ACA
26748244 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:26748325 original size:24 final size:24
Alignment explanation
Indices: 26748298--26748376 Score: 101
Period size: 24 Copynumber: 3.3 Consensus size: 24
26748288 AGGAAGTGCG
26748298 AAGGGCTTATGCCCCAGTTATTAA
1 AAGGGCTTATGCCCCAGTTATTAA
26748322 AAGGGCTTATGCCCCAGTTATTAAAA
1 AAGGGCTTATGCCCCAGTTATT--AA
*
26748348 AAGGGCTT-CG-CCCAG-TATTAA
1 AAGGGCTTATGCCCCAGTTATTAA
26748369 AAGAGGCT
1 AAG-GGCT
26748377 AGGCCTCTAG
Statistics
Matches: 51, Mismatches: 1, Indels: 8
0.85 0.02 0.13
Matches are distributed among these distances:
21 5 0.10
22 4 0.08
23 4 0.08
24 27 0.53
25 1 0.02
26 10 0.20
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (24 bp):
AAGGGCTTATGCCCCAGTTATTAA
Found at i:26751813 original size:40 final size:38
Alignment explanation
Indices: 26751757--26751917 Score: 130
Period size: 40 Copynumber: 4.1 Consensus size: 38
26751747 CGGAATTTAA
** *
26751757 CCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATA-AG-TACTCGCACAAATGCCTTCGGGACATAAC
* *
26751797 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATA-AGT-ACTCGCACAAATGCCTTCGGGACATAAC
* **
26751837 CCGGATAAGTAC-CGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATAAGTACTCGCACAAATGCCTTCGGGA-CATAAC
* * * *
26751874 CCGGATATGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATAAGT-AC-TCGCACAAATGCCTTCGGGACATAAC
26751913 CCGGA
1 CCGGA
26751918 CATCATTCAA
Statistics
Matches: 104, Mismatches: 11, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
36 3 0.03
37 28 0.27
38 4 0.04
39 20 0.19
40 49 0.47
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (38 bp):
CCGGATAAGTACTCGCACAAATGCCTTCGGGACATAAC
Found at i:26759896 original size:80 final size:81
Alignment explanation
Indices: 26759752--26759928 Score: 204
Period size: 80 Copynumber: 2.2 Consensus size: 81
26759742 AGCTACTGTT
* * *
26759752 CAAATGCCTTCGGGACAT-AGCCGGTTATAGTAACTCGTACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
26759816 ATTTAGTAAC-TCGCA
66 ATATAGTAACTTAGCA
***
26759831 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAATGCCTTC-GGATCTTGGTCC
1 CAAATGCCTTCGGGACTTAACCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* *
26759894 GGATATGGTCACTTAGCA
64 GGATATAGTAACTTAGCA
26759912 CAAA-G-CTTCGGGACTTA
1 CAAATGCCTTCGGGACTTA
26759929 GCCCAGACAT
Statistics
Matches: 84, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
79 32 0.38
80 42 0.50
81 10 0.12
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCA
Found at i:26759897 original size:40 final size:40
Alignment explanation
Indices: 26759752--26759883 Score: 214
Period size: 40 Copynumber: 3.3 Consensus size: 40
26759742 AGCTACTGTT
* * *
26759752 CAAATGCCTTCGGGACAT-AGCCGG-TTATAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
26759791 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
26759831 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
26759871 CAAATGCCTTCGG
1 CAAATGCCTTCGG
26759884 ATCTTGGTCC
Statistics
Matches: 88, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
39 17 0.19
40 69 0.78
41 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:26778158 original size:6 final size:6
Alignment explanation
Indices: 26778147--26778262 Score: 94
Period size: 6 Copynumber: 18.8 Consensus size: 6
26778137 TATCAAAACT
* * *
26778147 AGAATC AGAATC AGAATC AAAATC AGAATC AGAATT AG-GTGAC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC
* * *
26778196 AGAATC AGTATC AGGTAA-C AGAATC AAAATC AGAATC AGTATC AGGTAA-C
1 AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC AGAATC A-G-AATC
*
26778246 AGAATC AAAATC AGAAT
1 AGAATC AGAATC AGAAT
26778263 GTGAATGAAA
Statistics
Matches: 87, Mismatches: 14, Indels: 18
0.73 0.12 0.15
Matches are distributed among these distances:
5 5 0.06
6 71 0.82
7 8 0.09
8 3 0.03
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:26778193 original size:31 final size:31
Alignment explanation
Indices: 26778192--26778262 Score: 142
Period size: 31 Copynumber: 2.3 Consensus size: 31
26778182 TAGGTGACAG
26778192 AATCAGAATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
26778223 AATCAGAATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
26778254 AATCAGAAT
1 AATCAGAAT
26778263 GTGAATGAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.49, C:0.15, G:0.15, T:0.20
Consensus pattern (31 bp):
AATCAGAATCAGTATCAGGTAACAGAATCAA
Found at i:26778201 original size:25 final size:25
Alignment explanation
Indices: 26778147--26778259 Score: 108
Period size: 25 Copynumber: 4.6 Consensus size: 25
26778137 TATCAAAACT
*
26778147 AGAATCAGAATCA-G-AATCAAAATC
1 AGAATCAGAATCAGGTAA-CAGAATC
* *
26778171 AGAATCAGAATTAGGTGACAGAATC
1 AGAATCAGAATCAGGTAACAGAATC
*
26778196 AGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGGTAACAGAATC
* *
26778221 AAAATCAGAATCA-GTATCAGGTAA-C
1 AGAATCAGAATCAGGTAACA-G-AATC
*
26778246 AGAATCAAAATCAG
1 AGAATCAGAATCAG
26778260 AATGTGAATG
Statistics
Matches: 73, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
24 17 0.23
25 53 0.73
26 3 0.04
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.19
Consensus pattern (25 bp):
AGAATCAGAATCAGGTAACAGAATC
Found at i:26778217 original size:19 final size:19
Alignment explanation
Indices: 26778195--26778252 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
26778185 GTGACAGAAT
26778195 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
*
26778214 CAGAATCA--A--A---AT
1 CAGAATCAGTATCAGGTAA
26778226 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
26778245 CAGAATCA
1 CAGAATCA
26778253 AAATCAGAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 9 0.30
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
19 17 0.57
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (19 bp):
CAGAATCAGTATCAGGTAA
Found at i:26778700 original size:27 final size:27
Alignment explanation
Indices: 26778660--26778900 Score: 335
Period size: 27 Copynumber: 9.0 Consensus size: 27
26778650 TCTACCATTT
* *
26778660 TACCCCACAAGGGT-TTCTCGGTAATTC
1 TACCCTACAGGGGTATT-TCGGTAATTC
* *
26778687 TACCTTACAGGGGTATTTCAGT-ATTCC
1 TACCCTACAGGGGTATTTCGGTAATT-C
*
26778714 TACCCTACAAGGGTATTTCGGTAATTC
1 TACCCTACAGGGGTATTTCGGTAATTC
* *
26778741 TACCCTACAGGGGTATTTCAGTAATTA
1 TACCCTACAGGGGTATTTCGGTAATTC
* *
26778768 TA-CCTATAGGGGTATTTCGATAATTC
1 TACCCTACAGGGGTATTTCGGTAATTC
* *
26778794 TACCCTACAGGGGTATTTCGATAATTT
1 TACCCTACAGGGGTATTTCGGTAATTC
*
26778821 TACCCTACAGGGGTATTTCAGTAATTC
1 TACCCTACAGGGGTATTTCGGTAATTC
26778848 TACCCTACAGGGGTATTTCGGTAATTC
1 TACCCTACAGGGGTATTTCGGTAATTC
26778875 TACCCTACAGGGGTATTTCGGTAATT
1 TACCCTACAGGGGTATTTCGGTAATT
26778901 TTATAAATCA
Statistics
Matches: 190, Mismatches: 20, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
26 25 0.13
27 160 0.84
28 5 0.03
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (27 bp):
TACCCTACAGGGGTATTTCGGTAATTC
Found at i:26778919 original size:54 final size:54
Alignment explanation
Indices: 26778700--26778927 Score: 167
Period size: 54 Copynumber: 4.2 Consensus size: 54
26778690 CTTACAGGGG
* * * *** * *
26778700 TATTTCAGT-ATTCCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGG
1 TATTTCGGTAATT-CTACCCTACAGGGGTATTTCAGTAATTCTAAAATACAAGGA
* * * *** * *
26778754 TATTTCAGTAATTATA-CCTATAGGGGTATTTC-GATAATTCTACCCTACAGGGG
1 TATTTCGGTAATTCTACCCTACAGGGGTATTTCAG-TAATTCTAAAATACAAGGA
* * *** * *
26778807 TATTTCGATAATTTTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGG
1 TATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAAAATACAAGGA
* *
26778861 TATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTTTATAAAT-CAAGGA
1 TATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTA-AAATACAAGGA
*
26778915 TATTTGGGTAATT
1 TATTTCGGTAATT
26778928 TTATAAACCG
Statistics
Matches: 152, Mismatches: 17, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
52 1 0.01
53 46 0.30
54 100 0.66
55 5 0.03
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (54 bp):
TATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAAAATACAAGGA
Found at i:26778951 original size:27 final size:27
Alignment explanation
Indices: 26778855--26778981 Score: 98
Period size: 27 Copynumber: 4.7 Consensus size: 27
26778845 TTCTACCCTA
* ***
26778855 CAGGGGTATTTCGGTAATTCTACCCTA-
1 CAGGGGTATTTCGGTAATTTTA-TAAAC
*
26778882 CAGGGGTATTTCGGTAATTTTATAAAT
1 CAGGGGTATTTCGGTAATTTTATAAAC
* * *
26778909 CAAGGATATTTGGGTAATTTTATAAAC
1 CAGGGGTATTTCGGTAATTTTATAAAC
* *
26778936 CGGGGGTACTTT-GGTAATTTTA-CAAC
1 CAGGGGTA-TTTCGGTAATTTTATAAAC
** *
26778962 TGGGGGTATTTCAGTAATTT
1 CAGGGGTATTTCGGTAATTT
26778982 GGTAAACTAA
Statistics
Matches: 83, Mismatches: 14, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
25 3 0.04
26 18 0.22
27 59 0.71
28 3 0.04
ACGTcount: A:0.27, C:0.12, G:0.24, T:0.38
Consensus pattern (27 bp):
CAGGGGTATTTCGGTAATTTTATAAAC
Found at i:26778968 original size:134 final size:134
Alignment explanation
Indices: 26778695--26778980 Score: 330
Period size: 134 Copynumber: 2.1 Consensus size: 134
26778685 TCTACCTTAC
26778695 AGGGGTATTTCAGT-ATTCCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTT
1 AGGGGTATTTCAGTAATTCCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTT
** * * **
26778759 CAGTAATTATACCTATAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGATAATTTTAC
66 CAGTAATTATACAAATAAGGATATTTCGATAATTCTACCAAACAGGGGTATTTCGATAATTTTAC
*
26778824 CCTA
131 ACTA
*
26778828 CAGGGGTATTTCAGTAATT-CTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATT
1 -AGGGGTATTTCAGTAATTCCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATT
* * * * * * * * *
26778892 TCGGTAATTTTATAAATCAAGGATATTTGGGTAATTTTA-TAAACCGGGGGTACTTT-GGTAATT
65 TCAGTAATTATACAAAT-AAGGATATTTCGATAATTCTACCAAA-CAGGGGTA-TTTCGATAATT
26778955 TTACAACT-
127 TTAC-ACTA
*
26778963 GGGGGTATTTCAGTAATT
1 AGGGGTATTTCAGTAATT
26778981 TGGTAAACTA
Statistics
Matches: 129, Mismatches: 18, Indels: 10
0.82 0.11 0.06
Matches are distributed among these distances:
134 88 0.68
135 36 0.28
136 5 0.04
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.36
Consensus pattern (134 bp):
AGGGGTATTTCAGTAATTCCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTT
CAGTAATTATACAAATAAGGATATTTCGATAATTCTACCAAACAGGGGTATTTCGATAATTTTAC
ACTA
Found at i:26778978 original size:26 final size:27
Alignment explanation
Indices: 26778922--26778981 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 27
26778912 GGATATTTGG
*
26778922 GTAATTTTATAAACCGGGGGTACTTTG
1 GTAATTTTATAAACCGGGGGTACTTTA
* *
26778949 GTAATTTTA-CAACTGGGGGTA-TTTCA
1 GTAATTTTATAAACCGGGGGTACTTT-A
26778975 GTAATTT
1 GTAATTT
26778982 GGTAAACTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
25 3 0.10
26 17 0.59
27 9 0.31
ACGTcount: A:0.27, C:0.10, G:0.23, T:0.40
Consensus pattern (27 bp):
GTAATTTTATAAACCGGGGGTACTTTA
Done.