Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 81 of 343
Found at i:26797436 original size:7 final size:7
Alignment explanation
Indices: 26797424--26797449 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
26797414 TTTGACAAAT
26797424 GGAAAAG
1 GGAAAAG
26797431 GGAAAAG
1 GGAAAAG
26797438 GGAAAAG
1 GGAAAAG
26797445 GGAAA
1 GGAAA
26797450 TAAAAAGGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (7 bp):
GGAAAAG
Found at i:26798900 original size:43 final size:43
Alignment explanation
Indices: 26798852--26798956 Score: 122
Period size: 43 Copynumber: 2.4 Consensus size: 43
26798842 TAACGACATG
* * * *
26798852 TGATTATGTGTAAGACCATGTTTGGGACATTGGCGTCATTATT
1 TGATTATGTGTAAGACCATGTCTGAGACATTAGCATCATTATT
* * *
26798895 TGATTACGTGTAAGACTATGTCTGAGACATTAGCATCGTTATT
1 TGATTATGTGTAAGACCATGTCTGAGACATTAGCATCATTATT
*
26798938 TGATT-TCGAGTAAGACCAT
1 TGATTAT-GTGTAAGACCAT
26798957 AGCTGGGCTA
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
43 51 1.00
ACGTcount: A:0.27, C:0.13, G:0.23, T:0.37
Consensus pattern (43 bp):
TGATTATGTGTAAGACCATGTCTGAGACATTAGCATCATTATT
Found at i:26805212 original size:4 final size:4
Alignment explanation
Indices: 26805205--26805229 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
26805195 AATGACCAAC
26805205 AGAA AGAA AGAA AGAA AGAA AGAA A
1 AGAA AGAA AGAA AGAA AGAA AGAA A
26805230 ATGAATTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:26807299 original size:48 final size:48
Alignment explanation
Indices: 26807243--26807394 Score: 187
Period size: 48 Copynumber: 3.2 Consensus size: 48
26807233 ACATGGTAGA
* * *
26807243 ATGCCAATGCCATATCCCGGATATAGTCTTACATGGGATCACATATCG
1 ATGCCAATGCCATGTCCCAGAAATAGTCTTACATGGGATCACATATCG
** **
26807291 ATGCCAATGCCATGTCCCAGAAATAGTCTTACATGGGATCGTAGGTCG
1 ATGCCAATGCCATGTCCCAGAAATAGTCTTACATGGGATCACATATCG
* * * * *
26807339 ATGCCAATGCCATGTCCCAGACATGGCCTTAGATTGGATCACATATCG
1 ATGCCAATGCCATGTCCCAGAAATAGTCTTACATGGGATCACATATCG
*
26807387 GTGCCAAT
1 ATGCCAAT
26807395 AGCCCAGCTA
Statistics
Matches: 87, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 87 1.00
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.26
Consensus pattern (48 bp):
ATGCCAATGCCATGTCCCAGAAATAGTCTTACATGGGATCACATATCG
Found at i:26809418 original size:40 final size:40
Alignment explanation
Indices: 26809286--26809470 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
26809276 TTGAATGATG
* * * *
26809286 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
26809326 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26809365 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26809405 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
26809446 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26809471 AACGAGTAGC
Statistics
Matches: 131, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
38 1 0.01
39 34 0.26
40 86 0.66
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26809422 original size:79 final size:81
Alignment explanation
Indices: 26809286--26809470 Score: 252
Period size: 79 Copynumber: 2.3 Consensus size: 81
26809276 TTGAATGATG
*
26809286 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
26809350 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * * **
26809365 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
26809428 TTGTGCGAGTTACTATA
65 TTGTGCGAGTTACTATA
* *
26809445 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26809471 AACGAGTAGC
Statistics
Matches: 93, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
78 1 0.01
79 61 0.66
80 31 0.33
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:26809492 original size:79 final size:79
Alignment explanation
Indices: 26809287--26809503 Score: 226
Period size: 79 Copynumber: 2.7 Consensus size: 79
26809277 TGAATGATGT
** * * * * **
26809287 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGAAC-GAGTTACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
26809350 TGTGCGAGTTACTAAT
64 TGTGCGAGTTACTAAA
* ** *
26809366 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTG
26809431 TGCGAGTTACTATAA
66 TGCGAGTTACTA-AA
* * *
26809446 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTA-CTAAATCCGGGTTAAATCCCGAAGG
26809504 TACGTGATTT
Statistics
Matches: 118, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
78 1 0.01
79 75 0.64
80 42 0.36
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTG
TGCGAGTTACTAAA
Found at i:26809501 original size:119 final size:119
Alignment explanation
Indices: 26809286--26809503 Score: 273
Period size: 119 Copynumber: 1.8 Consensus size: 119
26809276 TTGAATGATG
*
26809286 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
** *
26809351 GTGCGAGTTACTAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
66 GAACGAGTTACTAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * * * *
26809405 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
*
26809468 TTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
64 TTGAACGAGTTA-CTA-ATCCGGGTTAAATCCCGAAGG
26809504 TACGTGATTT
Statistics
Matches: 84, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
118 3 0.04
119 70 0.83
120 11 0.13
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (119 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGTTACTAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26817551 original size:40 final size:40
Alignment explanation
Indices: 26817314--26817537 Score: 305
Period size: 40 Copynumber: 5.7 Consensus size: 40
26817304 TTGAATGATG
* * * * *
26817314 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
**
26817354 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
26817394 TCCGGG-TAAGT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
26817432 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
26817472 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
26817513 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
26817538 AACGAGTAGC
Statistics
Matches: 171, Mismatches: 8, Indels: 10
0.90 0.04 0.05
Matches are distributed among these distances:
38 34 0.20
39 9 0.05
40 118 0.69
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26817556 original size:80 final size:80
Alignment explanation
Indices: 26817314--26817537 Score: 314
Period size: 78 Copynumber: 2.8 Consensus size: 80
26817304 TTGAATGATG
* * * * * *
26817314 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
26817377 TTGTGCGAGTTACTAAA
64 TTGTGCGAGTTACTAAA
*
26817394 TCCGGG-TAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATT
26817456 TGTGCGAGTTACTAAA
65 TGTGCGAGTTACTAAA
*
26817472 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
26817537 G
66 G
26817538 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 8, Indels: 12
0.87 0.05 0.08
Matches are distributed among these distances:
77 2 0.02
78 55 0.42
79 17 0.13
80 54 0.42
81 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:26820556 original size:27 final size:27
Alignment explanation
Indices: 26820515--26820585 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
26820505 GCATTAGGAT
26820515 CCCATGTTTAATGTCCTAGCGGACTAC
1 CCCATGTTTAATGTCCTAGCGGACTAC
* * * * *
26820542 CCCATTTTTACTGTCCCAGTGGACTAT
1 CCCATGTTTAATGTCCTAGCGGACTAC
* *
26820569 CCTATGTTTAGTGTCCT
1 CCCATGTTTAATGTCCT
26820586 GATAGAATAT
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.18, C:0.28, G:0.17, T:0.37
Consensus pattern (27 bp):
CCCATGTTTAATGTCCTAGCGGACTAC
Found at i:26821456 original size:26 final size:26
Alignment explanation
Indices: 26821427--26821476 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
26821417 ATCCATATTT
* *
26821427 TACCCCCAATTAAATTTTGACGATTG
1 TACCCCCAATAAAATTTTAACGATTG
* *
26821453 TACCCCTAGTAAAATTTTAACGAT
1 TACCCCCAATAAAATTTTAACGAT
26821477 CAACATGTTC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.34, C:0.22, G:0.10, T:0.34
Consensus pattern (26 bp):
TACCCCCAATAAAATTTTAACGATTG
Found at i:26824257 original size:28 final size:28
Alignment explanation
Indices: 26824225--26824280 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
26824215 GATAAGGTTG
*
26824225 GCTTTATATAAGTCCACAAGAAATGAAA
1 GCTTTATATAAGTCCACAAGAAAGGAAA
26824253 GCTTTATATAAGTCCACAAGAAAGGAAA
1 GCTTTATATAAGTCCACAAGAAAGGAAA
26824281 ACTTAATAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.46, C:0.14, G:0.16, T:0.23
Consensus pattern (28 bp):
GCTTTATATAAGTCCACAAGAAAGGAAA
Found at i:26825100 original size:13 final size:13
Alignment explanation
Indices: 26825084--26825108 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26825074 CAAATCACTC
26825084 AACCAAAGTGCCT
1 AACCAAAGTGCCT
26825097 AACCAAAGTGCC
1 AACCAAAGTGCC
26825109 CTCATTAACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.32, G:0.16, T:0.12
Consensus pattern (13 bp):
AACCAAAGTGCCT
Found at i:26826959 original size:40 final size:40
Alignment explanation
Indices: 26826905--26826982 Score: 129
Period size: 40 Copynumber: 1.9 Consensus size: 40
26826895 CGGATGTAAC
26826905 AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
* * *
26826945 AACCCGCACGAATGCCTTTGGGACTTAACCCGGTTATA
1 AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATA
26826983 TTTTTTCCAG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.23
Consensus pattern (40 bp):
AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:26829077 original size:121 final size:121
Alignment explanation
Indices: 26828863--26829104 Score: 484
Period size: 121 Copynumber: 2.0 Consensus size: 121
26828853 CCCAAAAGAA
26828863 AAAATTCAAAAACTACCAAAATATCTTTAGAGAGTGTGATTCTTCGAGTTGATCCAATCGCCCGA
1 AAAATTCAAAAACTACCAAAATATCTTTAGAGAGTGTGATTCTTCGAGTTGATCCAATCGCCCGA
26828928 TTTCTACAAAATGTAATCTACAAATAAATTAAAGAAATGACACGAGTAAGCTTTAC
66 TTTCTACAAAATGTAATCTACAAATAAATTAAAGAAATGACACGAGTAAGCTTTAC
26828984 AAAATTCAAAAACTACCAAAATATCTTTAGAGAGTGTGATTCTTCGAGTTGATCCAATCGCCCGA
1 AAAATTCAAAAACTACCAAAATATCTTTAGAGAGTGTGATTCTTCGAGTTGATCCAATCGCCCGA
26829049 TTTCTACAAAATGTAATCTACAAATAAATTAAAGAAATGACACGAGTAAGCTTTAC
66 TTTCTACAAAATGTAATCTACAAATAAATTAAAGAAATGACACGAGTAAGCTTTAC
26829105 TAGATCTTAG
Statistics
Matches: 121, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
121 121 1.00
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.28
Consensus pattern (121 bp):
AAAATTCAAAAACTACCAAAATATCTTTAGAGAGTGTGATTCTTCGAGTTGATCCAATCGCCCGA
TTTCTACAAAATGTAATCTACAAATAAATTAAAGAAATGACACGAGTAAGCTTTAC
Found at i:26843852 original size:45 final size:45
Alignment explanation
Indices: 26843768--26843877 Score: 134
Period size: 45 Copynumber: 2.4 Consensus size: 45
26843758 CCGATATACC
* *
26843768 AGCTCGTAAGAGCTTACTGTTTTCAGCTCATTAGAGCTTACCGCTTT
1 AGCTCGTATGAGCTTAC--TCTTCAGCTCATTAGAGCTTACCGCTTT
*
26843815 AGCTCGTATGAGCTTACTCTTCAGCTCGA-TAGAGCTTACCGTTTT
1 AGCTCGTATGAGCTTACTCTTCAGCTC-ATTAGAGCTTACCGCTTT
*
26843860 AGCTC-AATAGAGCTTACT
1 AGCTCGTAT-GAGCTTACT
26843878 GTTTCAGTTC
Statistics
Matches: 57, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
44 2 0.04
45 38 0.67
46 1 0.02
47 16 0.28
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.35
Consensus pattern (45 bp):
AGCTCGTATGAGCTTACTCTTCAGCTCATTAGAGCTTACCGCTTT
Found at i:26843900 original size:23 final size:23
Alignment explanation
Indices: 26843776--26843929 Score: 127
Period size: 23 Copynumber: 6.6 Consensus size: 23
26843766 CCAGCTCGTA
*
26843776 AGAGCTTACTGTTTTCAGCTCATT
1 AGAGCTTACTG-TTTCAGCTCAAT
* *
26843800 AGAGCTTACCGCTTT-AGCTC-GT
1 AGAGCTTACTG-TTTCAGCTCAAT
* *
26843822 ATGAGCTTACT-CTTCAGCTCGAT
1 A-GAGCTTACTGTTTCAGCTCAAT
* *
26843845 AGAGCTTACCGTTTTAGCTCAAT
1 AGAGCTTACTGTTTCAGCTCAAT
*
26843868 AGAGCTTACTGTTTCAGTTCAAT
1 AGAGCTTACTGTTTCAGCTCAAT
* *
26843891 AGAGTTTACTGATCATT-AGCTCAAG
1 AGAGCTTACTG-T--TTCAGCTCAAT
26843916 AGGAGCTTACTGTT
1 A-GAGCTTACTGTT
26843930 CATGGCTCGA
Statistics
Matches: 105, Mismatches: 17, Indels: 17
0.76 0.12 0.12
Matches are distributed among these distances:
21 2 0.02
22 15 0.14
23 55 0.52
24 14 0.13
25 8 0.08
26 11 0.10
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (23 bp):
AGAGCTTACTGTTTCAGCTCAAT
Found at i:26845008 original size:56 final size:55
Alignment explanation
Indices: 26844906--26845010 Score: 124
Period size: 55 Copynumber: 1.9 Consensus size: 55
26844896 CAGTATGCTC
* * *
26844906 CACATGGCCTCACACATGGGCATGTGATCTGCCATGTGGTATAAGTCAGAAATGG
1 CACATGGCCTCACACACGGGCATGTGATCTGCCATGTGGCAGAAGTCAGAAATGG
* *
26844961 CACATGGCCT-AGCACACGGGCTTGTGA-CTTGGCCATGTTGCAGAAGTCAG
1 CACATGGCCTCA-CACACGGGCATGTGATC-T-GCCATGTGGCAGAAGTCAG
26845011 TATATCCTAC
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
54 2 0.05
55 24 0.57
56 16 0.38
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.23
Consensus pattern (55 bp):
CACATGGCCTCACACACGGGCATGTGATCTGCCATGTGGCAGAAGTCAGAAATGG
Found at i:26852578 original size:48 final size:48
Alignment explanation
Indices: 26852505--26852632 Score: 159
Period size: 48 Copynumber: 2.7 Consensus size: 48
26852495 CGATTAGTGA
* * *
26852505 GAGCCAGTGTAAGGCCATGTCTGGGACATGGTATCAACGTTGATATGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACATTGATATG-T
* **
26852554 -AGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGATATGT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACATTGATATGT
* * *
26852601 GTGCCAGTGTAAGACCATATCTGGGATATGGC
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGC
26852633 GTCGGTCTCG
Statistics
Matches: 68, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
47 1 0.01
48 67 0.99
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACATTGATATGT
Found at i:26852648 original size:48 final size:49
Alignment explanation
Indices: 26852507--26852682 Score: 146
Period size: 48 Copynumber: 3.7 Consensus size: 49
26852497 ATTAGTGAGA
* * * * ** * *
26852507 GCCAGTGTAAGGCCATGTCTGGGACATGGTATCAACGTTGATA--TGAT
1 GCCAGTGTAAGACCATATCTGGGATATGGCATCGGCATCGATATGTGAT
* * * *
26852554 AGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGATATGTG-T
1 -GCCAGTGTAAGACCATATCTGGGATATGGCATCGGCATCGATATGTGAT
* *
26852603 GCCAGTGTAAGACCATATCTGGGATATGGCGTCGGTC-TCGGTATGTGAT
1 GCCAGTGTAAGACCATATCTGGGATATGGCATCGG-CATCGATATGTGAT
** *
26852652 TTCA-TGTAAGACCATATCTAGGATATGGCAT
1 GCCAGTGTAAGACCATATCTGGGATATGGCAT
26852683 TGATATGAGA
Statistics
Matches: 108, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
48 101 0.94
49 5 0.05
50 2 0.02
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (49 bp):
GCCAGTGTAAGACCATATCTGGGATATGGCATCGGCATCGATATGTGAT
Found at i:26852767 original size:42 final size:42
Alignment explanation
Indices: 26852654--26852769 Score: 117
Period size: 42 Copynumber: 2.8 Consensus size: 42
26852644 TATGTGATTT
* * * **
26852654 CATGTAAGACCATATCTAGGATATGGCATTGATATGAGATTT
1 CATGTAAGACCATGTCTAGGACATGGCATCGATATGAGATGC
* * * * *
26852696 CGTGTAAGACTATGTCTGGGACTTGGCATCGATGTGA-AGTGC
1 CATGTAAGACCATGTCTAGGACATGGCATCGATATGAGA-TGC
*
26852738 CATGTAAGACCATGTCTAGAACATGGCATCGA
1 CATGTAAGACCATGTCTAGGACATGGCATCGA
26852770 CACTGACGTA
Statistics
Matches: 58, Mismatches: 15, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
41 1 0.02
42 57 0.98
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.28
Consensus pattern (42 bp):
CATGTAAGACCATGTCTAGGACATGGCATCGATATGAGATGC
Found at i:26855509 original size:25 final size:25
Alignment explanation
Indices: 26855462--26855509 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
26855452 TTATAATATG
* * *
26855462 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
*
26855487 AAAATGACCATTATACCCTTAGG
1 AAAATGACCATTATACCCCTAGG
26855510 GTTTTTATAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:26855593 original size:11 final size:11
Alignment explanation
Indices: 26855556--26855612 Score: 59
Period size: 11 Copynumber: 5.5 Consensus size: 11
26855546 ACATCGTATG
26855556 CATGATATGCA
1 CATGATATGCA
*
26855567 CATGACATG--
1 CATGATATGCA
*
26855576 TATGATATGCA
1 CATGATATGCA
26855587 CATGATATG--
1 CATGATATGCA
*
26855596 TATGATATGCA
1 CATGATATGCA
26855607 CATGAT
1 CATGAT
26855613 GTATTCATAA
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
9 15 0.42
11 21 0.58
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (11 bp):
CATGATATGCA
Found at i:26855612 original size:20 final size:20
Alignment explanation
Indices: 26855552--26855612 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
26855542 ATAAACATCG
*
26855552 TATGCATGATATGCACATGA
1 TATGTATGATATGCACATGA
*
26855572 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
26855592 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
26855612 T
1 T
26855613 GTATTCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.13, G:0.20, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:26855689 original size:24 final size:24
Alignment explanation
Indices: 26855662--26855815 Score: 245
Period size: 24 Copynumber: 6.4 Consensus size: 24
26855652 GAGGAAGTGC
* *
26855662 AAAAGGGCTTATGCCCTAGTAATT
1 AAAAGGGCTTATGCCCCAGTTATT
26855686 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
26855710 AAAAGGGCTTATGCCCCAGTGATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
26855734 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
*
26855758 AAAAGGGCTTATGCCCCAATTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
26855782 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
26855806 AAAAGAGGCT
1 AAAAG-GGCT
26855816 AGACCTCCAG
Statistics
Matches: 120, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
24 116 0.97
25 4 0.03
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:26870528 original size:43 final size:41
Alignment explanation
Indices: 26870468--26870630 Score: 173
Period size: 43 Copynumber: 3.9 Consensus size: 41
26870458 GCACACATAT
* * *
26870468 CATACAATGCCAACGTCCCAGACGTGGTTTTACATGCCATCA
1 CATACAATGCCAACGTCCCAGACGTGGTCTTACACG-AATCA
* **
26870510 CATATCAATGCCACCGTCCCAGACAAGGTCTTACACGAATCA
1 CATA-CAATGCCAACGTCCCAGACGTGGTCTTACACGAATCA
* * * *
26870552 AATACAATGCCAATGTCCCAGAACTTGGTCTTACACGTAACCA
1 CATACAATGCCAACGTCCCAG-ACGTGGTCTTACACG-AATCA
**
26870595 CATATCAATGCCAATATCCCAGACGTGGTCTTACAC
1 CATA-CAATGCCAACGTCCCAGACGTGGTCTTACAC
26870631 AAGAACACAT
Statistics
Matches: 102, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
41 15 0.15
42 24 0.24
43 47 0.46
44 16 0.16
ACGTcount: A:0.32, C:0.31, G:0.15, T:0.23
Consensus pattern (41 bp):
CATACAATGCCAACGTCCCAGACGTGGTCTTACACGAATCA
Found at i:26870615 original size:85 final size:84
Alignment explanation
Indices: 26870469--26870630 Score: 207
Period size: 85 Copynumber: 1.9 Consensus size: 84
26870459 CACACATATC
* * * * * *
26870469 ATACAATGCCAACGTCCCAGACGTGGTTTTACATGCCATCACATATCAATGCCACCGTCCCAGAC
1 ATACAATGCCAACGTCCCAGACGTGGTCTTACACGCAACCACATATCAATGCCAACATCCCAGAC
26870534 AAGGTCTTACACGAATCAA
66 AAGGTCTTACACGAATCAA
* * * *
26870553 ATACAATGCCAATGTCCCAGAACTTGGTCTTACACGTAACCACATATCAATGCCAATATCCCAGA
1 ATACAATGCCAACGTCCCAG-ACGTGGTCTTACACGCAACCACATATCAATGCCAACATCCCAGA
**
26870618 CGTGGTCTTACAC
65 CAAGGTCTTACAC
26870631 AAGAACACAT
Statistics
Matches: 65, Mismatches: 12, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
84 19 0.29
85 46 0.71
ACGTcount: A:0.32, C:0.30, G:0.15, T:0.23
Consensus pattern (84 bp):
ATACAATGCCAACGTCCCAGACGTGGTCTTACACGCAACCACATATCAATGCCAACATCCCAGAC
AAGGTCTTACACGAATCAA
Found at i:26881607 original size:49 final size:50
Alignment explanation
Indices: 26881517--26881757 Score: 270
Period size: 49 Copynumber: 4.8 Consensus size: 50
26881507 ATCTATTATG
* * *
26881517 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAATT
* * * *
26881567 -GGTCGCATGTGGAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAA-TT
* * * * * * * **
26881617 CGATCACGTGTGTAGTACTAAGTGCAGACTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAATT
* *
26881667 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCATACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAATT
* * *
26881717 -GGTCGCATGTGTAGTACTAAATGCAGGCTACTATGCGTACC
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACC
26881758 AGACAACCTT
Statistics
Matches: 157, Mismatches: 32, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
49 76 0.48
50 45 0.29
51 36 0.23
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAATT
Found at i:26881792 original size:150 final size:150
Alignment explanation
Indices: 26881517--26881793 Score: 398
Period size: 150 Copynumber: 1.8 Consensus size: 150
26881507 ATCTATTATG
* **
26881517 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGGAGT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCATACCGGATAATTGGTCGCATGTGGAGT
* * * ** * *
26881582 ACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGATCACGTGTGTAGTACTAAGTGCAGACT
66 ACTAAATGCAGGCTACTATGCGTACCAGACAACTTCGATCACAAGTGTAGAAATAAGTGCAGACT
26881647 ACTACGTGTATCAGATGGTT
131 ACTACGTGTATCAGATGGTT
*
26881667 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCATACCGGATAATTGGTCGCATGTGTAGT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCATACCGGATAATTGGTCGCATGTGGAGT
*
26881732 ACTAAATGCAGGCTACTATGCGTACCAGACAACCTT-G-TCTACAAGTG-AGAAAATATGTGCAG
66 ACTAAATGCAGGCTACTATGCGTACCAGACAA-CTTCGATC-ACAAGTGTAG-AAATAAGTGCAG
26881794 GCAACTGAGT
Statistics
Matches: 112, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
149 4 0.04
150 105 0.94
151 3 0.03
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.27
Consensus pattern (150 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCATACCGGATAATTGGTCGCATGTGGAGT
ACTAAATGCAGGCTACTATGCGTACCAGACAACTTCGATCACAAGTGTAGAAATAAGTGCAGACT
ACTACGTGTATCAGATGGTT
Found at i:26887804 original size:25 final size:25
Alignment explanation
Indices: 26887758--26887808 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
26887748 CCCTTATAAC
* *
26887758 GTGAAAATGACCTTTTTGCCCCTAG
1 GTGAAAATGACCTTTATACCCCTAG
26887783 GTGAAAATGA-CTATTATACCCCTAG
1 GTGAAAATGACCT-TTATACCCCTAG
26887808 G
1 G
26887809 GTTATGTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 2 0.09
25 21 0.91
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (25 bp):
GTGAAAATGACCTTTATACCCCTAG
Found at i:26887867 original size:10 final size:10
Alignment explanation
Indices: 26887852--26887886 Score: 61
Period size: 10 Copynumber: 3.4 Consensus size: 10
26887842 TTTGTACATA
26887852 ATATGCCATG
1 ATATGCCATG
26887862 ATATGCACATG
1 ATATGC-CATG
26887873 ATATGCCATG
1 ATATGCCATG
26887883 ATAT
1 ATAT
26887887 ATACATATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 14 0.58
11 10 0.42
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Consensus pattern (10 bp):
ATATGCCATG
Found at i:26887871 original size:21 final size:21
Alignment explanation
Indices: 26887847--26887886 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
26887837 ACTGATTTGT
26887847 ACATAATATGCCATGATATGC
1 ACATAATATGCCATGATATGC
*
26887868 ACATGATATGCCATGATAT
1 ACATAATATGCCATGATAT
26887887 ATACATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (21 bp):
ACATAATATGCCATGATATGC
Found at i:26887892 original size:21 final size:20
Alignment explanation
Indices: 26887846--26887898 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 20
26887836 TACTGATTTG
*
26887846 TACATAATATGCCATGATATG
1 TACAT-ATATGCCATGATATA
*
26887867 CACATGATATGCCATGATATA
1 TACAT-ATATGCCATGATATA
26887888 TACATATATGC
1 TACATATATGC
26887899 ATGGGTTGGG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 6 0.21
21 22 0.79
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.32
Consensus pattern (20 bp):
TACATATATGCCATGATATA
Found at i:26888014 original size:24 final size:25
Alignment explanation
Indices: 26887930--26888001 Score: 108
Period size: 25 Copynumber: 2.8 Consensus size: 25
26887920 TGGAGGAAGT
* *
26887930 GAAAAAGGGCTATGCCCCAGTTTACC
1 GAAAAA-GGCTTTGCCCCAGTTTATC
*
26887956 GAAAAAGGCTTTGGCCCAGTTTATC
1 GAAAAAGGCTTTGCCCCAGTTTATC
26887981 GAAAAAGGCTTTGCCCCAGTT
1 GAAAAAGGCTTTGCCCCAGTT
26888002 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
25 36 0.86
26 6 0.14
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.24
Consensus pattern (25 bp):
GAAAAAGGCTTTGCCCCAGTTTATC
Found at i:26888257 original size:31 final size:31
Alignment explanation
Indices: 26888222--26888305 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
26888212 CGTTTACAGT
26888222 AAAGGCTTCGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* *
26888253 AAAGGCTTCGGCCCAGTGGTATGAATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
*
26888284 AAAGGCTTCGACCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
26888306 TTGAGATTGA
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
30 4 0.08
31 45 0.92
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:26890505 original size:51 final size:48
Alignment explanation
Indices: 26890388--26890580 Score: 219
Period size: 48 Copynumber: 4.0 Consensus size: 48
26890378 CTATTGTGAG
* * * * *
26890388 GTCACGTGTGTAGTACGAAGTGCAAGCTACTACGTGTACAGGATAATT
1 GTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCGGATAATT
* * * *
26890436 GTCGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCGATAACTT
1 GTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCGGATAA-TT
26890485 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTA-GCGTACCGGATAATT
1 -G-TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCGGATAATT
* * *
26890534 GGC-CGTATGTGTAGTACTAAGTGCAGCCTACTATGCGTACCAGATAA
1 GTCACG--TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCGGATAA
26890581 CCTTGTCTAC
Statistics
Matches: 123, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
46 2 0.02
47 1 0.01
48 63 0.51
49 16 0.13
50 13 0.11
51 28 0.23
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (48 bp):
GTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCGGATAATT
Found at i:26890565 original size:99 final size:99
Alignment explanation
Indices: 26890389--26890581 Score: 289
Period size: 99 Copynumber: 1.9 Consensus size: 99
26890379 TATTGTGAGG
* *
26890389 TCACGTGTGTAGTACGAAGTGCAAGCTACTACGTGTACAGGATAATTGTCGCATGTGTAGTACTA
1 TCACGTGTGTAGTACGAAGTGCAAGCTACTACGCGTACAGGATAATTGCCGCATGTGTAGTACTA
* * *
26890454 AGTGTAGGCTACTATGCGTACCCGATAACTTCGA
66 AGTGCAGCCTACTATGCGTACCAGATAACTTCGA
* * * *
26890488 TCACGTGTGTAGTACTAAGTGCAGGCTACTA-GCGTACCGGATAATTGGCCGTATGTGTAGTACT
1 TCACGTGTGTAGTACGAAGTGCAAGCTACTACGCGTACAGGATAATT-GCCGCATGTGTAGTACT
26890552 AAGTGCAGCCTACTATGCGTACCAGATAAC
65 AAGTGCAGCCTACTATGCGTACCAGATAAC
26890582 CTTGTCTACA
Statistics
Matches: 84, Mismatches: 9, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
98 13 0.15
99 71 0.85
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (99 bp):
TCACGTGTGTAGTACGAAGTGCAAGCTACTACGCGTACAGGATAATTGCCGCATGTGTAGTACTA
AGTGCAGCCTACTATGCGTACCAGATAACTTCGA
Found at i:26894728 original size:27 final size:27
Alignment explanation
Indices: 26894675--26894728 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
26894665 TGTCATGTGA
* *
26894675 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
** *
26894702 AATTGAATGTTAAATTACTATTCCATG
1 AATTGAATGGCAAATTACTATTACATG
26894729 GGTTGTATGA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.37, C:0.09, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:26895099 original size:49 final size:50
Alignment explanation
Indices: 26894928--26895117 Score: 202
Period size: 49 Copynumber: 3.8 Consensus size: 50
26894918 TGAGGTAACG
* * * * *
26894928 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCAAA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-TTAGGTCACA
* * * * ** *
26894979 TGTGCAATACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTAGGTCACA
* * *
26895029 TGTGTAGTACTAAGTACAGGCTACTACGCGTACCGGATAATT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTAGGTCACA
* * *
26895078 TGTGTAGTACTAAGTGTAGGCTGCTATGCGTACCAGATAA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA
26895118 CCTTGTCTAC
Statistics
Matches: 112, Mismatches: 27, Indels: 2
0.79 0.19 0.01
Matches are distributed among these distances:
49 40 0.36
50 40 0.36
51 32 0.29
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTAGGTCACA
Found at i:26897171 original size:13 final size:13
Alignment explanation
Indices: 26897153--26897177 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26897143 TCGAGCACAC
26897153 GCCCGTGTCCCTA
1 GCCCGTGTCCCTA
26897166 GCCCGTGTCCCT
1 GCCCGTGTCCCT
26897178 CACATGGCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.04, C:0.48, G:0.24, T:0.24
Consensus pattern (13 bp):
GCCCGTGTCCCTA
Found at i:26914760 original size:20 final size:20
Alignment explanation
Indices: 26914722--26914762 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
26914712 TAAATTCTAA
* **
26914722 AAAGATAAATACATTTAATT
1 AAAGATAAATAAAGATAATT
26914742 AAAGATAAATAAAGATAATT
1 AAAGATAAATAAAGATAATT
26914762 A
1 A
26914763 GAATAAAATC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.29
Consensus pattern (20 bp):
AAAGATAAATAAAGATAATT
Found at i:26914794 original size:27 final size:26
Alignment explanation
Indices: 26914764--26914826 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
26914754 AGATAATTAG
26914764 AATAAAATCCTAAAATTAAATAATCCT
1 AATAAAATCCTAAAATT-AATAATCCT
* * * *
26914791 AATAATTATCTTAATATTAATTATCCT
1 AATAA-AATCCTAAAATTAATAATCCT
26914818 AATATAAAT
1 AATA-AAAT
26914827 AAAATGGAGT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 19 0.66
28 10 0.34
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (26 bp):
AATAAAATCCTAAAATTAATAATCCT
Found at i:26914813 original size:15 final size:15
Alignment explanation
Indices: 26914793--26914822 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26914783 ATAATCCTAA
*
26914793 TAATTATCTTAATAT
1 TAATTATCCTAATAT
26914808 TAATTATCCTAATAT
1 TAATTATCCTAATAT
26914823 AAATAAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:26927563 original size:28 final size:28
Alignment explanation
Indices: 26927530--26927607 Score: 147
Period size: 29 Copynumber: 2.8 Consensus size: 28
26927520 ATGTACTATT
26927530 ATACCCCTATGTATGCAAAATTACCATA
1 ATACCCCTATGTATGCAAAATTACCATA
26927558 ATACCCCTATGTATGCAAAAATTACCATA
1 ATACCCCTATGTATGC-AAAATTACCATA
26927587 ATACCCCTATGTATGCAAAAT
1 ATACCCCTATGTATGCAAAAT
26927608 GACTTTTATA
Statistics
Matches: 49, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
28 21 0.43
29 28 0.57
ACGTcount: A:0.40, C:0.24, G:0.08, T:0.28
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATTACCATA
Found at i:26927789 original size:27 final size:27
Alignment explanation
Indices: 26927731--26927820 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
26927721 AGGAAGCGTC
26927731 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
26927759 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
26927786 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
26927815 CTGGTG
1 CTGGTG
26927821 ACTCCGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:26927839 original size:55 final size:56
Alignment explanation
Indices: 26927731--26927845 Score: 139
Period size: 55 Copynumber: 2.1 Consensus size: 56
26927721 AGGAAGCGTC
* *
26927731 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* *
26927786 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCC-GTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGAC-CCTGCCACATATATCTGTAT
26927842 CTGG
1 CTGG
26927846 CAGCCATACT
Statistics
Matches: 52, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 19 0.37
57 2 0.04
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:26928312 original size:18 final size:18
Alignment explanation
Indices: 26928273--26928313 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
26928263 TAATAAGGCC
* *
26928273 TTTTAATTATTTTTATGG
1 TTTTAATTACTTTTATGA
*
26928291 TTTTAATTACTTTTATTA
1 TTTTAATTACTTTTATGA
26928309 TTTTA
1 TTTTA
26928314 TTTTACTATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.24, C:0.02, G:0.05, T:0.68
Consensus pattern (18 bp):
TTTTAATTACTTTTATGA
Found at i:26940007 original size:41 final size:42
Alignment explanation
Indices: 26939909--26940040 Score: 133
Period size: 43 Copynumber: 3.1 Consensus size: 42
26939899 AATACCAACA
* * * * * *
26939909 TCCCAAACGTGGTCTTACATGCCATTACATATCGATACCACTG
1 TCCCAGACATGGTCTTACATG-AATCACATATCGATGCCAATG
* * *
26939952 TCCCAGATAGGGTCTTACATGAATCAAATA-CGATGCCAATG
1 TCCCAGACATGGTCTTACATGAATCACATATCGATGCCAATG
*
26939993 TCCCAGACATGGTCTTACACAT-AATCACATATCGATGCCAACG
1 TCCCAGACATGGTCTT--ACATGAATCACATATCGATGCCAATG
26940036 TCCCA
1 TCCCA
26940041 AATGTGGTCT
Statistics
Matches: 73, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
41 23 0.32
42 14 0.19
43 36 0.49
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (42 bp):
TCCCAGACATGGTCTTACATGAATCACATATCGATGCCAATG
Found at i:26942831 original size:47 final size:47
Alignment explanation
Indices: 26942773--26943057 Score: 392
Period size: 47 Copynumber: 6.1 Consensus size: 47
26942763 TTAGGATTTT
** **
26942773 ATGTGATGAATGTGAATGTATATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
26942820 ATGTGACGAATGTGAACATGCACATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
26942867 ATGTGACGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
26942914 GTGTAATGAATGTGAACATGCACATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
26942961 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * * *
26943008 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGACGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
26943055 ATG
1 ATG
26943058 CGAAATGCGT
Statistics
Matches: 214, Mismatches: 23, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
47 211 0.99
48 3 0.01
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.25
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:26943014 original size:22 final size:22
Alignment explanation
Indices: 26942939--26943014 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
26942929 ACATGCACAT
*
26942939 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCAGAATGGCCA
*
26942961 ATGTGATGAATGTG-A-ACAT-GCATA
1 ATGTGAT-AA-G-GCAGA-ATGGC-CA
26942985 TATGTGATAAGGCAGAATGGCCA
1 -ATGTGATAAGGCAGAATGGCCA
26943008 ATGTGAT
1 ATGTGAT
26943015 GAACGTGGAA
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 15 0.36
23 10 0.24
24 9 0.21
25 8 0.19
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCAGAATGGCCA
Found at i:26943084 original size:46 final size:46
Alignment explanation
Indices: 26943031--26943121 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
26943021 GGAAGTGTAT
* *
26943031 ATATGTGGTAAAGACGAATGGCTAATGCGAAATGCGTATGAGATGG
1 ATATGTGGTAAAGACAAATGGCTAATGCGAAATACGTATGAGATGG
* * * *
26943077 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGACAAATGGCTAATGCGAAATACGTATGAGATG
26943122 TGTATATATA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.35, C:0.08, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGACAAATGGCTAATGCGAAATACGTATGAGATGG
Found at i:26946244 original size:6 final size:6
Alignment explanation
Indices: 26946226--26946374 Score: 135
Period size: 6 Copynumber: 24.3 Consensus size: 6
26946216 AAGAAACATT
26946226 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * *
26946274 ATCAGA ATTAG- GTGACAGA ATCAAA ATCAGA ATCAGA ATCAGT ATCAGGTA
1 ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
* * * *
26946325 A-CAGA ATCAAA ATCAGA ATCAGT ATCAGGTA A-GAGA ATCAAA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
26946373 AT
1 AT
26946375 GTGAATGCAA
Statistics
Matches: 116, Mismatches: 16, Indels: 22
0.75 0.10 0.14
Matches are distributed among these distances:
5 6 0.05
6 99 0.85
7 8 0.07
8 3 0.03
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:26946296 original size:31 final size:31
Alignment explanation
Indices: 26946237--26946374 Score: 154
Period size: 31 Copynumber: 4.3 Consensus size: 31
26946227 TCAGAACTAG
*
26946237 AATCAGAATCAGAATCA-G-AATCAGAATCAG
1 AATCAGAATCAGAATCAGGTAA-CAGAATCAA
* *
26946267 AATCAGAATCAGAATTAGGTGACAGAATCAA
1 AATCAGAATCAGAATCAGGTAACAGAATCAA
26946298 AATCAGAATCAGAATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCAG----A--ATCAGGTAACAGAATCAA
* *
26946335 AATCAGAATCAGTATCAGGTAAGAGAATCAA
1 AATCAGAATCAGAATCAGGTAACAGAATCAA
26946366 AATCAGAAT
1 AATCAGAAT
26946375 GTGAATGCAA
Statistics
Matches: 93, Mismatches: 7, Indels: 15
0.81 0.06 0.13
Matches are distributed among these distances:
30 16 0.17
31 47 0.51
32 1 0.01
35 1 0.01
37 28 0.30
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.19
Consensus pattern (31 bp):
AATCAGAATCAGAATCAGGTAACAGAATCAA
Found at i:26947875 original size:105 final size:105
Alignment explanation
Indices: 26947679--26948052 Score: 635
Period size: 105 Copynumber: 3.6 Consensus size: 105
26947669 TAACCGTTAT
* * **
26947679 TGGTGGATCTCGCACTTAGCACCACCGCTGAATCGGGGAATCAGCACTTAGCAACCCCTCAGGGG
1 TGGTGGATCACGCACATAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTC-GGGG
26947744 GAATCAGCACATAGCAACCCCC-TTTCACATTTCAAAGATA
65 GAATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
* *
26947784 TGGTGGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGG
1 TGGTGGATCA-CGCACATAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
26947848 GAATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
65 GAATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
26947889 TGGTGGATCACGCACATAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATCACGCACATAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
*
26947954 AATCAGCACATAGCAACCCCCTTTTTACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
**
26947994 TGGTGGATCACGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGATCACGCACATAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
26948053 TTATATACAA
Statistics
Matches: 257, Mismatches: 9, Indels: 6
0.94 0.03 0.02
Matches are distributed among these distances:
104 26 0.10
105 230 0.89
106 1 0.00
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.19
Consensus pattern (105 bp):
TGGTGGATCACGCACATAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
Found at i:26949164 original size:27 final size:27
Alignment explanation
Indices: 26949060--26949167 Score: 146
Period size: 27 Copynumber: 4.0 Consensus size: 27
26949050 AAGTCAGTCA
* *
26949060 CTACCCTACAGGGGTATTTCAGT-ATT
1 CTACCCTACAAGGGTATTTCGGTAATT
*
26949086 CCTACCCTACAAGGGTATTTCGATAATT
1 -CTACCCTACAAGGGTATTTCGGTAATT
*
26949114 CTACCCTACAGGGGTATTTCGGTAATT
1 CTACCCTACAAGGGTATTTCGGTAATT
* *
26949141 CTACCTTACAAGGGTATTTTGGTAATT
1 CTACCCTACAAGGGTATTTCGGTAATT
26949168 TCACAAACTA
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
27 69 0.96
28 3 0.04
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
CTACCCTACAAGGGTATTTCGGTAATT
Found at i:26949181 original size:54 final size:55
Alignment explanation
Indices: 26949067--26949222 Score: 151
Period size: 54 Copynumber: 2.9 Consensus size: 55
26949057 TCACTACCCT
* * * * **
26949067 ACAGGGGTATTTCAGT-ATTCCTACCCTACAAGGGTATTTCGATAA-TTCTACCCT
1 ACAGGGGTATTTCGGTAATT-CTACCATACAAGGGTATTTTGGTAATTTCTACCAA
*
26949121 ACAGGGGTATTTCGGTAATTCTACCTTACAAGGGTATTTTGGTAATTTC-A-CAA
1 ACAGGGGTATTTCGGTAATTCTACCATACAAGGGTATTTTGGTAATTTCTACCAA
* * * *
26949174 ACTAGGGGTATTTTGGTAATTTTA-CAAACCAGGGATATTTTGGTAATTT
1 AC-AGGGGTATTTCGGTAATTCTACCATACAAGGG-TATTTTGGTAATTT
26949223 TATTGATCGA
Statistics
Matches: 87, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
53 10 0.11
54 71 0.82
55 6 0.07
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.37
Consensus pattern (55 bp):
ACAGGGGTATTTCGGTAATTCTACCATACAAGGGTATTTTGGTAATTTCTACCAA
Found at i:26949266 original size:27 final size:27
Alignment explanation
Indices: 26949149--26949399 Score: 126
Period size: 27 Copynumber: 9.3 Consensus size: 27
26949139 TTCTACCTTA
* *
26949149 CAAGGGTATTTTGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
26949176 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
** *
26949203 C-AGGGATATTTTGGTAATTTTATTGAT
1 CAAGGG-TATTTTGGTAATTTTATAAAC
* * *
26949230 CGAGGATATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* ** * *
26949257 CAATGGTATTTCAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *** * *
26949284 CGAGGGTAAAATGGTAATTCTATAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *** *
26949311 CGAGGGTAAAATGGTAATTTTATAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *** * *
26949338 CGAGGGTAAAATGGTAATTCTATAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *** * *
26949365 CGAGGGTAAAATGGTAATTCTATAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
26949392 CGAGGGTA
1 CAAGGGTA
26949400 AAACGATAAT
Statistics
Matches: 191, Mismatches: 31, Indels: 4
0.85 0.14 0.02
Matches are distributed among these distances:
26 3 0.02
27 185 0.97
28 3 0.02
ACGTcount: A:0.35, C:0.08, G:0.22, T:0.36
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAC
Found at i:26949299 original size:81 final size:81
Alignment explanation
Indices: 26949214--26949441 Score: 233
Period size: 81 Copynumber: 2.8 Consensus size: 81
26949204 AGGGATATTT
* ** *** * * ** *
26949214 TGGTAATTTTATTGATCGAGGATATTTTGGTAATTTTGTAAACCAATGGT-ATTTCAGTAATTTT
1 TGGTAATTCTATAAATCGAGGATAAAATGGTAATTTTATAAACCAAGGGTAAAAT-AGTAATTCT
*
26949278 GTAAATCGAGGGTAAAA
65 ATAAATCGAGGGTAAAA
* * * *
26949295 TGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTA
1 TGGTAATTCTATAAATCGAGGATAAAATGGTAATTTTATAAACCAAGGGTAAAATAGTAATTCTA
26949360 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
* * * * * * *
26949376 TGGTAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTAAAATGGTAATTCTA
1 TGGTAATTCTATAAATCGAGGATAAAATGGTAATTTTATAAACCAAGGGTAAAATAGTAATTCTA
26949441 T
66 T
26949442 CTTACAGGAG
Statistics
Matches: 127, Mismatches: 19, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
81 125 0.98
82 2 0.02
ACGTcount: A:0.37, C:0.07, G:0.21, T:0.35
Consensus pattern (81 bp):
TGGTAATTCTATAAATCGAGGATAAAATGGTAATTTTATAAACCAAGGGTAAAATAGTAATTCTA
TAAATCGAGGGTAAAA
Found at i:26949400 original size:27 final size:27
Alignment explanation
Indices: 26949270--26949441 Score: 281
Period size: 27 Copynumber: 6.4 Consensus size: 27
26949260 TGGTATTTCA
* *
26949270 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
26949297 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
26949324 GTAATTTTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
26949351 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
26949378 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
26949405 ATAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
26949432 GTAATTCTAT
1 GTAATTCTAT
26949442 CTTACAGGAG
Statistics
Matches: 133, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 133 1.00
ACGTcount: A:0.40, C:0.06, G:0.22, T:0.32
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:26949481 original size:27 final size:27
Alignment explanation
Indices: 26949451--26949706 Score: 256
Period size: 27 Copynumber: 9.6 Consensus size: 27
26949441 TCTTACAGGA
*
26949451 GTATTTCAATAATTTTACAAATCGAGG
1 GTATTTCAGTAATTTTACAAATCGAGG
26949478 GTATTTCAGTAATTTTACAAATCGAGG
1 GTATTTCAGTAATTTTACAAATCGAGG
* *
26949505 ATATTTCAGTAATTTTACAAATTGAGG
1 GTATTTCAGTAATTTTACAAATCGAGG
26949532 GTATTTC-GATAATTTTACAAATCGAGG
1 GTATTTCAG-TAATTTTACAAATCGAGG
* ** * *
26949559 ATATTTGGGTAATTTTATAAATCGAAG
1 GTATTTCAGTAATTTTACAAATCGAGG
* * *
26949586 GTACTTT-GGTAATTTTACAAGTCCAGG
1 GTA-TTTCAGTAATTTTACAAATCGAGG
*
26949613 GTATTTCAGTAATTTTAC-AATCGACG
1 GTATTTCAGTAATTTTACAAATCGAGG
* * *
26949639 GTATTTC-GAAAATTTTATAAACCG-GAG
1 GTATTTCAG-TAATTTTACAAATCGAG-G
* * *
26949666 GTACTTT-GGTAATTTTAC-AATTGGGG
1 GTA-TTTCAGTAATTTTACAAATCGAGG
26949692 GTATTTCAGTAATTT
1 GTATTTCAGTAATTT
26949707 GGTAAACTAA
Statistics
Matches: 191, Mismatches: 27, Indels: 23
0.79 0.11 0.10
Matches are distributed among these distances:
25 4 0.02
26 37 0.19
27 142 0.74
28 8 0.04
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.39
Consensus pattern (27 bp):
GTATTTCAGTAATTTTACAAATCGAGG
Found at i:26951255 original size:29 final size:29
Alignment explanation
Indices: 26951185--26951309 Score: 171
Period size: 29 Copynumber: 4.3 Consensus size: 29
26951175 AAGTCTGCAT
* **
26951185 ACATGCATATGGCCCCCTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
26951213 TCATTCATAGGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
26951242 ACATTCTTATGGCCCATTAGGCACAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
26951271 ACATTCATATGGCCCATTAGGCCTAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
26951300 ACATTCATAT
1 ACATTCATAT
26951310 ACATGCTTCC
Statistics
Matches: 84, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
28 19 0.23
29 65 0.77
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:26951543 original size:16 final size:16
Alignment explanation
Indices: 26951519--26951561 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
26951509 GTAGCTAAAC
* *
26951519 TTTCAGCTTTTTGACA
1 TTTCGGCTTTTCGACA
*
26951535 TTTCGGCTTTTCGGCA
1 TTTCGGCTTTTCGACA
*
26951551 TTTTGGCTTTT
1 TTTCGGCTTTT
26951562 GCTGATCTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.09, C:0.19, G:0.19, T:0.53
Consensus pattern (16 bp):
TTTCGGCTTTTCGACA
Found at i:26956632 original size:56 final size:56
Alignment explanation
Indices: 26956565--26956701 Score: 238
Period size: 56 Copynumber: 2.4 Consensus size: 56
26956555 TCCCAGACAG
*
26956565 GGTCTTACTCGCACACATATATCGTAGTCAAATATCAATGCCAATGTATAAAACGT
1 GGTCTTACTCGCACACATATATCGAAGTCAAATATCAATGCCAATGTATAAAACGT
* *
26956621 GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAATGTATAAAACGT
1 GGTCTTACTCGCACACATATATCGAAGTCAAATATCAATGCCAATGTATAAAACGT
*
26956677 GGTCTTACTCGCATACATATATCGA
1 GGTCTTACTCGCACACATATATCGA
26956702 TGCCATGGTA
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 77 1.00
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGAAGTCAAATATCAATGCCAATGTATAAAACGT
Found at i:26957333 original size:15 final size:15
Alignment explanation
Indices: 26957310--26957340 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
26957300 GCAAAAATTC
26957310 CAATACAAAACATAT
1 CAATACAAAACATAT
*
26957325 CAATCCAAAACATAT
1 CAATACAAAACATAT
26957340 C
1 C
26957341 TTTCATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:26959499 original size:25 final size:25
Alignment explanation
Indices: 26959470--26959517 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
26959460 TTATAATATG
* *
26959470 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
26959495 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
26959518 GTTTATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:26959601 original size:11 final size:11
Alignment explanation
Indices: 26959565--26959620 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
26959555 TATGGTATGT
26959565 ATGATATGCAC
1 ATGATATGCAC
* *
26959576 ATGACATG--T
1 ATGATATGCAC
26959585 ATGATATGCAC
1 ATGATATGCAC
*
26959596 ATGATATG--T
1 ATGATATGCAC
26959605 ATGATATGCAC
1 ATGATATGCAC
26959616 ATGAT
1 ATGAT
26959621 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:26959620 original size:20 final size:20
Alignment explanation
Indices: 26959560--26959620 Score: 113
Period size: 20 Copynumber: 3.0 Consensus size: 20
26959550 ATAAATATGG
26959560 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
*
26959580 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
26959600 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
26959620 T
1 T
26959621 GTATTCATAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.34, C:0.11, G:0.20, T:0.34
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:26959737 original size:23 final size:24
Alignment explanation
Indices: 26959669--26959752 Score: 125
Period size: 26 Copynumber: 3.4 Consensus size: 24
26959659 GGAGGAAGTG
*
26959669 TAAAAGGGCTTATGCCCTAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
26959693 GATAAAAGGGCTTATGCCCCAGTTAT
1 --TAAAAGGGCTTATGCCCCAGTTAT
26959719 TAAAAGGGCTT-TGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
26959742 TAAAAGAGGCT
1 TAAAAG-GGCT
26959753 AGGCCTCCAA
Statistics
Matches: 56, Mismatches: 1, Indels: 4
0.92 0.02 0.07
Matches are distributed among these distances:
23 18 0.32
24 15 0.27
26 23 0.41
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.29
Consensus pattern (24 bp):
TAAAAGGGCTTATGCCCCAGTTAT
Found at i:26967533 original size:20 final size:20
Alignment explanation
Indices: 26967467--26967533 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
26967457 ATTTTGATAA
*
26967467 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
26967487 ACATGACATGTATCATATGC
1 ACATGATATGTATGATATGC
26967507 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
26967527 ACATGAT
1 ACATGAT
26967534 GTATTCATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:26967694 original size:24 final size:24
Alignment explanation
Indices: 26967582--26967762 Score: 249
Period size: 25 Copynumber: 7.4 Consensus size: 24
26967572 GGAGGAAGTG
* *
26967582 TAAAAGGGCTTATGCCCTAATTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
* *
26967606 GATAAAGGGCTTATGCCCTAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
*
26967631 GATAAAGGGCTTATGCCCCAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
*
26967656 AATAAAGGGCTTATGCCCCAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
26967681 TAAAAGGG-TCTATGCCCCAGTTAT
1 TAAAAGGGCT-TATGCCCCAGTTAT
26967705 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
26967729 TAAAAGGGCTT-TGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
26967752 TAAAAGAGGCT
1 TAAAAG-GGCT
26967763 AGGCCTCAAG
Statistics
Matches: 148, Mismatches: 5, Indels: 8
0.92 0.03 0.05
Matches are distributed among these distances:
23 19 0.13
24 58 0.39
25 71 0.48
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (24 bp):
TAAAAGGGCTTATGCCCCAGTTAT
Found at i:26968010 original size:31 final size:30
Alignment explanation
Indices: 26967970--26968033 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 30
26967960 CGTTTACTGT
*
26967970 AAAAGCTTCGGCCTAGTAATATGAAATATG
1 AAAAGCTTCGGCCCAGTAATATGAAATATG
**
26968000 AAAAGGCTTCGGCCCAGTGTTATGAAATATG
1 AAAA-GCTTCGGCCCAGTAATATGAAATATG
26968031 AAA
1 AAA
26968034 TATGAAAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 4 0.13
31 26 0.87
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.25
Consensus pattern (30 bp):
AAAAGCTTCGGCCCAGTAATATGAAATATG
Found at i:26972031 original size:55 final size:54
Alignment explanation
Indices: 26971904--26972091 Score: 215
Period size: 55 Copynumber: 3.5 Consensus size: 54
26971894 AACTTACCAT
* * *
26971904 TGCCATGTCTTGACATGGTCTTAC-GTGGTATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATTGG-ATCCTTGCCTTATAGAACTCATCAA
* *
26971957 TGCCATGCCTTGGCATGGTCTTACATTGGA-CCTTTGCCTTATAGTAACTCATCAG
1 TGCCATGCCTTGACATGGTCTTACATTGGATCC-TTGCCTTATAG-AACTCATCAA
* * *
26972012 TGCCATGTCTTGACATGGTCTTACA-T-GATTTCCTTGCCTTATAGAACTTATAAA
1 TGCCATGCCTTGACATGGTCTTACATTGGA--TCCTTGCCTTATAGAACTCATCAA
*
26972066 TGCCATGCCTTGGCATGGTCTTACAT
1 TGCCATGCCTTGACATGGTCTTACAT
26972092 GATATCCTTA
Statistics
Matches: 115, Mismatches: 12, Indels: 14
0.82 0.09 0.10
Matches are distributed among these distances:
52 2 0.02
53 34 0.30
54 35 0.30
55 42 0.37
56 2 0.02
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.36
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATTGGATCCTTGCCTTATAGAACTCATCAA
Found at i:26972135 original size:47 final size:47
Alignment explanation
Indices: 26972079--26972200 Score: 226
Period size: 47 Copynumber: 2.6 Consensus size: 47
26972069 CATGCCTTGG
* *
26972079 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
26972126 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
26972173 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
26972201 GTGACAATGC
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:26972361 original size:44 final size:44
Alignment explanation
Indices: 26972295--26972378 Score: 107
Period size: 44 Copynumber: 1.9 Consensus size: 44
26972285 TCCTTGACTG
* *
26972295 TCAATTCCTCCTTAAATGCCATGTTATGAA-CATGGACTTTTCCA
1 TCAATTCCTCCTTAAATGCCATGGTA-CAACCATGGACTTTTCCA
* * *
26972339 TCAATTCTTCCTTAATTTCCATGGTACAACCATGGACTTT
1 TCAATTCCTCCTTAAATGCCATGGTACAACCATGGACTTT
26972379 GAGATATCAA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
43 2 0.06
44 32 0.94
ACGTcount: A:0.26, C:0.25, G:0.11, T:0.38
Consensus pattern (44 bp):
TCAATTCCTCCTTAAATGCCATGGTACAACCATGGACTTTTCCA
Found at i:26975020 original size:68 final size:68
Alignment explanation
Indices: 26974906--26975099 Score: 170
Period size: 68 Copynumber: 2.9 Consensus size: 68
26974896 TAGATGGTAT
* * * * *
26974906 GTAGCTAGGTCACATGTGTAATA-C-GGGATGTATACCATGT-GTACAAGAGAGCTACGAGACAT
1 GTAGCTAGGTCGCATGCGTGATACCAGTGATGTACACCATGTAG-ACAAGAGAGCTACGAGACA-
26974968 TATGAG
64 TAT-AG
* * *
26974974 GTAGCTAGGTCGCATG-GATGATACTA-TG-TGTACACCATGTAGACAAGAGAGCTATG-G-GAT
1 GTAGCTAGGTCGCATGCG-TGATACCAGTGATGTACACCATGTAGACAAGAGAGCTACGAGACAT
*
26975034 ATAT
65 ATAG
* * * *
26975038 GTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 GTAGCTAGGTCGCATGCGTGATACCA-GTGATGTACACCATGTAGACAAGAGAGCTACGAGA
26975100 TAAATTGGCT
Statistics
Matches: 102, Mismatches: 14, Indels: 19
0.76 0.10 0.14
Matches are distributed among these distances:
64 22 0.22
65 4 0.04
66 3 0.03
67 27 0.26
68 44 0.43
69 2 0.02
ACGTcount: A:0.31, C:0.16, G:0.30, T:0.23
Consensus pattern (68 bp):
GTAGCTAGGTCGCATGCGTGATACCAGTGATGTACACCATGTAGACAAGAGAGCTACGAGACATA
TAG
Found at i:26978719 original size:8 final size:8
Alignment explanation
Indices: 26978706--26978737 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
26978696 CTAGATCGGC
26978706 AAAAGCCG
1 AAAAGCCG
26978714 AAAAGCCG
1 AAAAGCCG
*
26978722 AAATGCCG
1 AAAAGCCG
26978730 AAAAGCCG
1 AAAAGCCG
26978738 GTATTTTGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.47, C:0.25, G:0.25, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:26979016 original size:28 final size:28
Alignment explanation
Indices: 26978984--26979048 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
26978974 ATTTACTAGA
*
26978984 ATACCCCTATGTATGCAAAATTACCATC
1 ATACCCCTATGTATGCAAAATGACCATC
* * *
26979012 ATACCCCTATGTGTGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATC
26979040 ATACCCCTA
1 ATACCCCTA
26979049 GGGTTAATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.32, C:0.29, G:0.09, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATC
Found at i:26979195 original size:28 final size:27
Alignment explanation
Indices: 26979164--26979243 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
26979154 CTGGTGCCTA
*
26979164 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAA-TATCTGTTCTGGTGGCAC
** *
26979192 TGCCACGTATATTTGTTCTGGTGGCAC
1 TGCCACAAATATCTGTTCTGGTGGCAC
*
26979219 TGCCATAAAATATCTGTATCTGGTG
1 TGCCA-CAAATATCTGT-TCTGGTG
26979244 ACTCTGTCAC
Statistics
Matches: 42, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
27 21 0.50
28 14 0.33
29 7 0.17
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.35
Consensus pattern (27 bp):
TGCCACAAATATCTGTTCTGGTGGCAC
Found at i:26986565 original size:16 final size:15
Alignment explanation
Indices: 26986539--26986570 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
26986529 GCTAGATTGG
26986539 CAAAAGCCGAAAAGC
1 CAAAAGCCGAAAAGC
26986554 CAAAATGCCGAAAAGC
1 CAAAA-GCCGAAAAGC
26986570 C
1 C
26986571 GGTATTTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.50, C:0.28, G:0.19, T:0.03
Consensus pattern (15 bp):
CAAAAGCCGAAAAGC
Found at i:26986851 original size:28 final size:28
Alignment explanation
Indices: 26986819--26986883 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
26986809 ATTTACTAGA
*
26986819 ATACCCCTATGTATGCAAAATTACCATC
1 ATACCCCTATGTATGCAAAATGACCATC
* * *
26986847 ATACCCCTATGTGTGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATC
26986875 ATACCCCTA
1 ATACCCCTA
26986884 GGGTTAATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.32, C:0.29, G:0.09, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATC
Found at i:26987089 original size:29 final size:28
Alignment explanation
Indices: 26986999--26987089 Score: 67
Period size: 27 Copynumber: 3.2 Consensus size: 28
26986989 CTGGTTGCTA
* * * *
26986999 TGCCACAAATTATCTGTTCTAGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
* ** *
26987027 TGCTAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
* *
26987054 TGCCACAAAATATTTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
26987083 TGTCACA
1 TGCCACA
26987090 TTTTCTGTAT
Statistics
Matches: 48, Mismatches: 13, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
27 21 0.44
28 12 0.25
29 15 0.31
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.34
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:26997372 original size:246 final size:246
Alignment explanation
Indices: 26996938--26997400 Score: 899
Period size: 246 Copynumber: 1.9 Consensus size: 246
26996928 TAAAATGCCC
26996938 TAAATGTGTGTTTTTGGATTGATTTGAATGAATGTGAGTTTGAATAAGTTAAATTTGAATTTATA
1 TAAATGTGTGTTTTTGGATTGATTTGAATGAATGTGAGTTTGAATAAGTTAAATTTGAATTTATA
* *
26997003 TAGATCAAGAATTTGAAAAAGTAGAATTAGATCGGGGGAAAGTTGAAAGTCGTCGAGTACCTGAT
66 TAGATCAAGAATTTAAAAAAGTAAAATTAGATCGGGGGAAAGTTGAAAGTCGTCGAGTACCTGAT
26997068 TCCATCTATCCGAATTAGTACGAGGTACGCCTATATACAAATAAATGTATTTGAAATGGTTTATT
131 TCCATCTATCCGAATTAGTACGAGGTACGCCTATATACAAATAAATGTATTTGAAATGGTTTATT
*
26997133 TGTGCTTATATGCTATTGAATAATGATAAATGGCTTTATATTGAATAATGA
196 TATGCTTATATGCTATTGAATAATGATAAATGGCTTTATATTGAATAATGA
26997184 TAAATGTGTGTTTTTGGATTGATTTGAATGAATGTGAGTTTGAATAAGTTAAATTTGAATTTATA
1 TAAATGTGTGTTTTTGGATTGATTTGAATGAATGTGAGTTTGAATAAGTTAAATTTGAATTTATA
26997249 TAGATCAAGAATTTAAAAAAGTAAAATTAGATCGGGGGAAAGTTGAAAGTCGTCGAGTACCTGAT
66 TAGATCAAGAATTTAAAAAAGTAAAATTAGATCGGGGGAAAGTTGAAAGTCGTCGAGTACCTGAT
26997314 TCCATCTATCCGAATTAGTACGAGGTACGCCTATATACAAATAAATGTATTTGAAATGGTTTATT
131 TCCATCTATCCGAATTAGTACGAGGTACGCCTATATACAAATAAATGTATTTGAAATGGTTTATT
26997379 TATGCTTATATGCTATTGAATA
196 TATGCTTATATGCTATTGAATA
26997401 TGAGATATCT
Statistics
Matches: 214, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
246 214 1.00
ACGTcount: A:0.35, C:0.08, G:0.20, T:0.37
Consensus pattern (246 bp):
TAAATGTGTGTTTTTGGATTGATTTGAATGAATGTGAGTTTGAATAAGTTAAATTTGAATTTATA
TAGATCAAGAATTTAAAAAAGTAAAATTAGATCGGGGGAAAGTTGAAAGTCGTCGAGTACCTGAT
TCCATCTATCCGAATTAGTACGAGGTACGCCTATATACAAATAAATGTATTTGAAATGGTTTATT
TATGCTTATATGCTATTGAATAATGATAAATGGCTTTATATTGAATAATGA
Found at i:26999168 original size:27 final size:26
Alignment explanation
Indices: 26999151--26999220 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 26
26999141 ATATTAAGTC
26999151 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATAT-ATCAACT
*
26999178 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATAT-ATC-AACT
*
26999206 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
26999221 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (26 bp):
CGCACACTCAGTGCTATATATCAACT
Found at i:26999214 original size:28 final size:28
Alignment explanation
Indices: 26999151--26999248 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
26999141 ATATTAAGTC
*
26999151 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
26999178 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
26999206 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
26999235 CGCACACTTAGTGC
1 CGCACACTTAGTGC
26999249 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:27029861 original size:48 final size:43
Alignment explanation
Indices: 27029809--27030006 Score: 163
Period size: 42 Copynumber: 4.6 Consensus size: 43
27029799 TGATAGCCAG
* *
27029809 TGTAAGACCATATCTAGGATATGGTGTCAGCCTCGGTATGTGATTTCA
1 TGTAAGACCATATCTGGGATATGG-G-CA---TCGATATGTGATTTCA
* *
27029857 TGTAAGACCATATTTGGGATAT-GGCATTGATATGTGATTTCA
1 TGTAAGACCATATCTGGGATATGGGCATCGATATGTGATTTCA
* * * *
27029899 TGTAAGACTATATCTGGGATAT-GGCATTGATATGAGATTTCG
1 TGTAAGACCATATCTGGGATATGGGCATCGATATGTGATTTCA
* * * * *
27029941 TGTAAGACCATGTTTGGGACAT-GGCATCG--ATGTGAAGTCTCG
1 TGTAAGACCATATCTGGGATATGGGCATCGATATGTG-A-TTTCA
* *
27029983 TGTAAGACCATGTCTGGGACATGG
1 TGTAAGACCATATCTGGGATATGG
27030007 CTTTGGATTT
Statistics
Matches: 131, Mismatches: 16, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
40 4 0.03
41 1 0.01
42 101 0.77
43 1 0.01
45 2 0.02
46 1 0.01
47 1 0.01
48 20 0.15
ACGTcount: A:0.26, C:0.14, G:0.27, T:0.33
Consensus pattern (43 bp):
TGTAAGACCATATCTGGGATATGGGCATCGATATGTGATTTCA
Found at i:27029904 original size:42 final size:42
Alignment explanation
Indices: 27029845--27029967 Score: 192
Period size: 42 Copynumber: 2.9 Consensus size: 42
27029835 TCAGCCTCGG
27029845 TATGTGATTTCATGTAAGACCATATTTGGGATATGGCATTGA
1 TATGTGATTTCATGTAAGACCATATTTGGGATATGGCATTGA
* *
27029887 TATGTGATTTCATGTAAGACTATATCTGGGATATGGCATTGA
1 TATGTGATTTCATGTAAGACCATATTTGGGATATGGCATTGA
* * * *
27029929 TATGAGATTTCGTGTAAGACCATGTTTGGGACATGGCAT
1 TATGTGATTTCATGTAAGACCATATTTGGGATATGGCAT
27029968 CGATGTGAAG
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 73 1.00
ACGTcount: A:0.28, C:0.11, G:0.25, T:0.37
Consensus pattern (42 bp):
TATGTGATTTCATGTAAGACCATATTTGGGATATGGCATTGA
Found at i:27029984 original size:42 final size:41
Alignment explanation
Indices: 27029846--27030007 Score: 166
Period size: 42 Copynumber: 3.9 Consensus size: 41
27029836 CAGCCTCGGT
* * *
27029846 ATGTGA-TTTCATGTAAGACCATATTTGGGATATGGCATTG
1 ATGTGAGTTTCGTGTAAGACCATATCTGGGACATGGCATTG
* * *
27029886 ATATGTGA-TTTCATGTAAGACTATATCTGGGATATGGCATTG
1 --ATGTGAGTTTCGTGTAAGACCATATCTGGGACATGGCATTG
* * * *
27029928 ATATGAGATTTCGTGTAAGACCATGTTTGGGACATGGCATCG
1 ATGTGAG-TTTCGTGTAAGACCATATCTGGGACATGGCATTG
* *
27029970 ATGTGAAGTCTCGTGTAAGACCATGTCTGGGACATGGC
1 ATGTG-AGTTTCGTGTAAGACCATATCTGGGACATGGC
27030008 TTTGGATTTC
Statistics
Matches: 105, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
40 5 0.05
42 98 0.93
43 2 0.02
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (41 bp):
ATGTGAGTTTCGTGTAAGACCATATCTGGGACATGGCATTG
Found at i:27029987 original size:84 final size:83
Alignment explanation
Indices: 27029845--27030007 Score: 202
Period size: 84 Copynumber: 1.9 Consensus size: 83
27029835 TCAGCCTCGG
* * * * *
27029845 TATGTGATTTCATGTAAGACCATATTTGGGATATGGCATTGATATGTGATTTCATGTAAGACTAT
1 TATGAGATTTCATGTAAGACCATATTTGGGACATGGCATCGA-ATGTGATCTCATGTAAGACCAT
*
27029910 ATCTGGGATATGGCATTGA
65 ATCTGGGACATGGCATTGA
* * *
27029929 TATGAGATTTCGTGTAAGACCATGTTTGGGACATGGCATCG-ATGTGAAGTCTCGTGTAAGACCA
1 TATGAGATTTCATGTAAGACCATATTTGGGACATGGCATCGAATGTG-A-TCTCATGTAAGACCA
*
27029993 TGTCTGGGACATGGC
64 TATCTGGGACATGGC
27030008 TTTGGATTTC
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
82 5 0.07
83 1 0.01
84 61 0.91
ACGTcount: A:0.26, C:0.13, G:0.27, T:0.34
Consensus pattern (83 bp):
TATGAGATTTCATGTAAGACCATATTTGGGACATGGCATCGAATGTGATCTCATGTAAGACCATA
TCTGGGACATGGCATTGA
Found at i:27033730 original size:23 final size:24
Alignment explanation
Indices: 27033680--27033803 Score: 82
Period size: 23 Copynumber: 5.4 Consensus size: 24
27033670 CAATTCATAA
27033680 GAGCTTACTGTTTTCAGCTCATTG
1 GAGCTTACTGTTTTCAGCTCATTG
* *
27033704 GAGCTTA-TCGTTTT-AGCTCGTTT
1 GAGCTTACT-GTTTTCAGCTCATTG
* * *
27033727 GAGCTTAC--TATTCAGCTTGA-TA
1 GAGCTTACTGTTTTCAGC-TCATTG
* * *
27033749 GAGCTTACAGTTTT-AGCTCAATA
1 GAGCTTACTGTTTTCAGCTCATTG
* * *
27033772 AAGCTTACTG-TTTCAGCTCAATA
1 GAGCTTACTGTTTTCAGCTCATTG
27033795 GAGCTTACT
1 GAGCTTACT
27033804 ATTCATCAGC
Statistics
Matches: 81, Mismatches: 11, Indels: 17
0.74 0.10 0.16
Matches are distributed among these distances:
21 3 0.04
22 17 0.21
23 46 0.57
24 15 0.19
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.39
Consensus pattern (24 bp):
GAGCTTACTGTTTTCAGCTCATTG
Found at i:27033790 original size:68 final size:69
Alignment explanation
Indices: 27033679--27033808 Score: 165
Period size: 68 Copynumber: 1.9 Consensus size: 69
27033669 TCAATTCATA
* * ** * ** *
27033679 AGAGCTTACTGTTTTCAGCTCATTGGAGCTTATCGTTTTAGCTCGTTTGAGCTTACTATTCAGCT
1 AGAGCTTACAGTTTTCAGCTCAATAAAGCTTATCGTTTCAGCTCAATAGAGCTTACTATTCAGCT
27033744 TGAT
66 TGAT
27033748 AGAGCTTACAGTTTT-AGCTCAATAAAGCTTA-CTGTTTCAGCTCAATAGAGCTTACTATTCA
1 AGAGCTTACAGTTTTCAGCTCAATAAAGCTTATC-GTTTCAGCTCAATAGAGCTTACTATTCA
27033809 TCAGCTCAGG
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
67 1 0.02
68 37 0.71
69 14 0.27
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.38
Consensus pattern (69 bp):
AGAGCTTACAGTTTTCAGCTCAATAAAGCTTATCGTTTCAGCTCAATAGAGCTTACTATTCAGCT
TGAT
Found at i:27042404 original size:20 final size:20
Alignment explanation
Indices: 27042379--27042427 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
27042369 TTAGAGAGTC
27042379 ACACGCCCGCGTGGCTTGGG
1 ACACGCCCGCGTGGCTTGGG
27042399 ACACGCCCGCGTGGCTTGGG
1 ACACGCCCGCGTGGCTTGGG
27042419 ACACGCCCG
1 ACACGCCCG
27042428 TGTCCTCAGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.12, C:0.39, G:0.37, T:0.12
Consensus pattern (20 bp):
ACACGCCCGCGTGGCTTGGG
Found at i:27043922 original size:21 final size:21
Alignment explanation
Indices: 27043892--27043973 Score: 67
Period size: 21 Copynumber: 3.8 Consensus size: 21
27043882 TACATACATC
27043892 ATGAGCTCAGACCACAACTCA
1 ATGAGCTCAGACCACAACTCA
* *
27043913 ATGAGTTCAGATGTCACATACATC-
1 ATGAGCTCAGA--CCACA-AC-TCA
*
27043937 ATGAACTCAGACCACAACTCA
1 ATGAGCTCAGACCACAACTCA
* * *
27043958 ATAAGTTCAGATCACA
1 ATGAGCTCAGACCACA
27043974 TAGTTCCTAG
Statistics
Matches: 47, Mismatches: 9, Indels: 10
0.71 0.14 0.15
Matches are distributed among these distances:
20 2 0.04
21 24 0.51
22 4 0.09
23 4 0.09
24 11 0.23
25 2 0.04
ACGTcount: A:0.39, C:0.27, G:0.13, T:0.21
Consensus pattern (21 bp):
ATGAGCTCAGACCACAACTCA
Found at i:27043933 original size:45 final size:45
Alignment explanation
Indices: 27043883--27043969 Score: 156
Period size: 45 Copynumber: 1.9 Consensus size: 45
27043873 AACATGTGCT
* *
27043883 ACATACATCATGAGCTCAGACCACAACTCAATGAGTTCAGATGTC
1 ACATACATCATGAACTCAGACCACAACTCAATAAGTTCAGATGTC
27043928 ACATACATCATGAACTCAGACCACAACTCAATAAGTTCAGAT
1 ACATACATCATGAACTCAGACCACAACTCAATAAGTTCAGAT
27043970 CACATAGTTC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.39, C:0.26, G:0.13, T:0.22
Consensus pattern (45 bp):
ACATACATCATGAACTCAGACCACAACTCAATAAGTTCAGATGTC
Found at i:27046942 original size:30 final size:30
Alignment explanation
Indices: 27046908--27046968 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
27046898 TTCCCGAGCC
*
27046908 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATCCAAAAGTT
* * *
27046938 TAGGGGCAAAATTGTAATTTTCCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATCCAAAAGTT
27046968 T
1 T
27046969 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATCCAAAAGTT
Found at i:27047784 original size:64 final size:64
Alignment explanation
Indices: 27047703--27047886 Score: 187
Period size: 67 Copynumber: 2.8 Consensus size: 64
27047693 AGACATTATG
* *
27047703 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
27047767 ATGTAGCTAGGTCGCATGTGTGGCT-CTAGGTGAAGGACATCATGTAGACAAGAGAGCTACGAGA
1 ATGTAGCTAGGTCGCATGGGT-GATACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
27047831 TAA
62 TAA
* * * *
27047834 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGATACT-ATGTGTACACCATGTAG-ACAAGAGAGC
27047887 CGAACTCTAT
Statistics
Matches: 98, Mismatches: 15, Indels: 15
0.77 0.12 0.12
Matches are distributed among these distances:
62 1 0.01
63 18 0.18
64 24 0.24
65 4 0.04
66 19 0.19
67 32 0.33
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:27068775 original size:47 final size:44
Alignment explanation
Indices: 27068713--27068838 Score: 148
Period size: 47 Copynumber: 2.7 Consensus size: 44
27068703 ATCTCGTAGC
27068713 CGATGCATGTCCTAGACATGTCTTACACTAGCTCTTGTC-TCAATGT-
1 CGATGCATGTCCTAGACATGTCTTACACTAGCTC---TCAT-AATGTG
*
27068759 CGATGCCATGTCCTAGACATGGCCTTACACTAGCTCTCATAATGTGG
1 CGATG-CATGTCCTAGACAT-GTCTTACACTAGCTCTCATAATGT-G
*
27068806 CCGATGCATGTCCTAGACATGTCTTACATTAGC
1 -CGATGCATGTCCTAGACATGTCTTACACTAGC
27068839 ACACAAATAA
Statistics
Matches: 71, Mismatches: 3, Indels: 12
0.83 0.03 0.14
Matches are distributed among these distances:
45 7 0.10
46 17 0.24
47 28 0.39
48 19 0.27
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (44 bp):
CGATGCATGTCCTAGACATGTCTTACACTAGCTCTCATAATGTG
Found at i:27068786 original size:92 final size:93
Alignment explanation
Indices: 27068664--27068838 Score: 239
Period size: 94 Copynumber: 1.9 Consensus size: 93
27068654 CCTCTATACG
*
27068664 TGTCGATACCATGTCTAAGACATGGTCTTACACTAACACATC-T-CGTAGCCGATGCATGTCCTA
1 TGTCGATACCATGTCTAAGACATGGCCTTACACTAACAC-TCATACGTAGCCGATGCATGTCCTA
27068727 GACATGTCTTACACTAGCTCTTGTCTCAA
65 GACATGTCTTACACTAGCTCTTGTCTCAA
* * * * *
27068756 TGTCGATGCCATGTCCT-AGACATGGCCTTACACTAGCTCTCATAATGTGGCCGATGCATGTCCT
1 TGTCGATACCATGT-CTAAGACATGGCCTTACACTAACACTCAT-ACGTAGCCGATGCATGTCCT
*
27068820 AGACATGTCTTACATTAGC
64 AGACATGTCTTACACTAGC
27068839 ACACAAATAA
Statistics
Matches: 72, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
91 2 0.03
92 33 0.46
93 2 0.03
94 35 0.49
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (93 bp):
TGTCGATACCATGTCTAAGACATGGCCTTACACTAACACTCATACGTAGCCGATGCATGTCCTAG
ACATGTCTTACACTAGCTCTTGTCTCAA
Found at i:27074529 original size:8 final size:8
Alignment explanation
Indices: 27074516--27074546 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
27074506 ATTAGGGATT
*
27074516 AAAATGTA
1 AAAATGTC
27074524 AAAATGTC
1 AAAATGTC
27074532 AAAATGTC
1 AAAATGTC
27074540 AAAATGT
1 AAAATGT
27074547 GAGGGTTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.55, C:0.06, G:0.13, T:0.26
Consensus pattern (8 bp):
AAAATGTC
Found at i:27075027 original size:42 final size:42
Alignment explanation
Indices: 27074921--27075077 Score: 156
Period size: 43 Copynumber: 3.7 Consensus size: 42
27074911 TGTGTTTCCG
* * * *
27074921 TGTAAGACCACATTTGGGATATTGGCATCG-ACTAATGATTTACC
1 TGTAAGACCACATCTGGGACATTGGCATCGTA-T-TTGATTT-CA
** *
27074965 TGTAAGACCATGTCTTGGACATTGGCATCGTATTTGATTTCA
1 TGTAAGACCACATCTGGGACATTGGCATCGTATTTGATTTCA
* *
27075007 TGTAAGACC-CTATCTGGGACAGTGGCATCGATATTTGATTACA
1 TGTAAGACCAC-ATCTGGGACATTGGCATCG-TATTTGATTTCA
* *
27075050 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACATCTGGGACATTGGCAT
27075078 TGTACAAGAT
Statistics
Matches: 94, Mismatches: 15, Indels: 9
0.80 0.13 0.08
Matches are distributed among these distances:
42 26 0.28
43 40 0.43
44 27 0.29
45 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (42 bp):
TGTAAGACCACATCTGGGACATTGGCATCGTATTTGATTTCA
Found at i:27075619 original size:23 final size:24
Alignment explanation
Indices: 27075593--27075638 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
27075583 AGCCATGTGA
*
27075593 TATGGCTTGGTTCTGGT-TATGAT
1 TATGGCTTGATTCTGGTATATGAT
* *
27075616 TATGGTTTGATTTTGGTATATGA
1 TATGGCTTGATTCTGGTATATGA
27075639 AATGTGATGC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.17, C:0.04, G:0.28, T:0.50
Consensus pattern (24 bp):
TATGGCTTGATTCTGGTATATGAT
Found at i:27077240 original size:58 final size:58
Alignment explanation
Indices: 27077150--27077265 Score: 205
Period size: 58 Copynumber: 2.0 Consensus size: 58
27077140 AACGGGACAC
* * *
27077150 CTAGGATTTCTTTCAAGTTGAATTTCGAAAGAAATGCATCAATTAGAGATTTATCGAT
1 CTAGGATTTCTTTCAAGATGAATTTCAAAAGAAATGCATCAATCAGAGATTTATCGAT
27077208 CTAGGATTTCTTTCAAGATGAATTTCAAAAGAAATGCATCAATCAGAGATTTATCGAT
1 CTAGGATTTCTTTCAAGATGAATTTCAAAAGAAATGCATCAATCAGAGATTTATCGAT
27077266 GAGAAACACA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
58 55 1.00
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.34
Consensus pattern (58 bp):
CTAGGATTTCTTTCAAGATGAATTTCAAAAGAAATGCATCAATCAGAGATTTATCGAT
Found at i:27079991 original size:15 final size:15
Alignment explanation
Indices: 27079971--27080000 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
27079961 TGATAATGAG
27079971 ATAAAAGTAGAACGA
1 ATAAAAGTAGAACGA
27079986 ATAAAAGTAGAACGA
1 ATAAAAGTAGAACGA
27080001 GCTCAGTGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.60, C:0.07, G:0.20, T:0.13
Consensus pattern (15 bp):
ATAAAAGTAGAACGA
Found at i:27082723 original size:42 final size:43
Alignment explanation
Indices: 27082662--27082761 Score: 123
Period size: 42 Copynumber: 2.3 Consensus size: 43
27082652 GACTGATGAT
* *
27082662 TTACCTGTAAGACCATGTCT-AGGAAATTGGCATCG-TATTCGA
1 TTACATGTAAGACCATGTCTGA-GAAAGTGGCATCGATATTCGA
* * * *
27082704 TTTCATGTAAGACCCTGTCTGAGACAGTGGCATCGATATTTGA
1 TTACATGTAAGACCATGTCTGAGAAAGTGGCATCGATATTCGA
27082747 TTACATGTAAGACCA
1 TTACATGTAAGACCA
27082762 CGTCCGGGAC
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
42 28 0.58
43 20 0.42
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (43 bp):
TTACATGTAAGACCATGTCTGAGAAAGTGGCATCGATATTCGA
Found at i:27082778 original size:43 final size:43
Alignment explanation
Indices: 27082623--27082779 Score: 135
Period size: 43 Copynumber: 3.7 Consensus size: 43
27082613 TGTGTTTCCG
* * *
27082623 TGTAAGACCACATCTGGGATGTTGGCATCGACTGA--TGATTTACC
1 TGTAAGACCACGTCTGGGACGTTGGCATCGA-T-ATTTGA-TTACA
* * ** * *
27082667 TGTAAGACCATGTCTAGGAAATTGGCATCG-TATTCGATTTCA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACA
*
27082709 TGTAAGACC-CTGTCTGAGACAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTTGATTACA
*
27082752 TGTAAGACCACGTCCGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
27082780 TGTACGAGCT
Statistics
Matches: 89, Mismatches: 17, Indels: 15
0.74 0.14 0.12
Matches are distributed among these distances:
41 1 0.01
42 28 0.31
43 34 0.38
44 26 0.29
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACA
Found at i:27083320 original size:23 final size:24
Alignment explanation
Indices: 27083294--27083338 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
27083284 AGCCATGTGA
*
27083294 TATGGCTTGGTTTTGGT-TATGAT
1 TATGGCTTGATTTTGGTATATGAT
*
27083317 TATGGTTTGATTTTGGTATATG
1 TATGGCTTGATTTTGGTATATG
27083339 GAATGTGATG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 15 0.79
24 4 0.21
ACGTcount: A:0.16, C:0.02, G:0.29, T:0.53
Consensus pattern (24 bp):
TATGGCTTGATTTTGGTATATGAT
Found at i:27086031 original size:27 final size:27
Alignment explanation
Indices: 27086001--27086118 Score: 155
Period size: 27 Copynumber: 4.4 Consensus size: 27
27085991 GGGCAAAATG
* * * *
27086001 GTAATTTTACCCCACAAGGGTATCTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
27086028 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
27086055 ATAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
** *
27086082 GTAATTCTACTTTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
27086109 GTAATTCTAC
1 GTAATTCTAC
27086119 AACTTATCCA
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 82 1.00
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:27087720 original size:27 final size:27
Alignment explanation
Indices: 27087690--27087867 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
27087680 ATATTAAGTC
* *
27087690 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
27087717 CGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
*
27087745 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* ** ** *
27087772 CGCACACTTAGGGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
27087799 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
27087826 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
27087853 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
27087868 GTACAATTTA
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 103 0.80
28 26 0.20
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:27087829 original size:54 final size:54
Alignment explanation
Indices: 27087690--27087866 Score: 214
Period size: 54 Copynumber: 3.3 Consensus size: 54
27087680 ATATTAAGTC
* *
27087690 CGCACACTCAGTGCTAT-ATAATCAACTCGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGC-ATCATAATCAACTCGCACACTTAGTGCCACATAGTCAAA-T
* * * * *
27087745 CGCACACTTAGTGC-TACATAGTCAACTCGCACACTTAGGGCCGCATGGTCAATT
1 CGCACACTTAGTGCAT-CATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
* ** *
27087799 CGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
27087853 CGCACACTTAGTGC
1 CGCACACTTAGTGC
27087867 TGTACAATTT
Statistics
Matches: 104, Mismatches: 15, Indels: 7
0.83 0.12 0.06
Matches are distributed among these distances:
53 1 0.01
54 59 0.57
55 44 0.42
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.25
Consensus pattern (54 bp):
CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:27087848 original size:81 final size:82
Alignment explanation
Indices: 27087711--27087863 Score: 229
Period size: 81 Copynumber: 1.9 Consensus size: 82
27087701 TGCTATATAA
* *
27087711 TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCTACATAGTCAACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
27087776 CACTTAGGGCCGCATGG
66 CACTTAGGGCCGCATGG
* * **
27087793 TCAATTCGCACACTTAGTG-CATCATATTC-ATTTCGCACACTTAGTGCAACATAGTCAAATCGC
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGC
27087856 ACACTTAG
65 ACACTTAG
27087864 TGCTGTACAA
Statistics
Matches: 64, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 40 0.62
82 24 0.38
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.25
Consensus pattern (82 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
CACTTAGGGCCGCATGG
Found at i:27095829 original size:27 final size:27
Alignment explanation
Indices: 27095799--27095976 Score: 162
Period size: 27 Copynumber: 6.6 Consensus size: 27
27095789 ATATTAAGCC
* *
27095799 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
27095826 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
27095853 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
27095881 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
27095908 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
27095935 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
27095962 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
27095977 GTACAATTTA
Statistics
Matches: 125, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
27 101 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:27095938 original size:82 final size:81
Alignment explanation
Indices: 27095820--27095975 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
27095810 TGCTATATAA
* * *
27095820 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
27095885 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
27095902 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
27095966 CACTTAGTGC
65 CACTTAGTGC
27095976 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:27102561 original size:46 final size:46
Alignment explanation
Indices: 27102494--27102668 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
27102484 TGTAACCCGC
*
27102494 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGGCGTTCGCAT
* * *
27102540 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC--A-GGC--GTTCGCAT
* *
27102590 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGG-CGTTCGCAT
*
27102633 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAG
27102669 ATGCTCAATC
Statistics
Matches: 107, Mismatches: 11, Indels: 21
0.77 0.08 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 58 0.54
47 27 0.25
48 3 0.03
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGGCGTTCGCAT
Found at i:27102613 original size:93 final size:93
Alignment explanation
Indices: 27102501--27102672 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
27102491 CGCCCATAAG
*
27102501 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
*
27102565 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCAGATGCCTAGTTACATCTCA
*
27102594 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
27102659 ACGAGTTCAGATGC
66 ACGAGTTCAGATGC
27102673 TCAATCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCAGATGCCTAGTTACATCTCA
Found at i:27104909 original size:20 final size:20
Alignment explanation
Indices: 27104884--27104923 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
27104874 CCCGTTCCAC
27104884 AACTGAGTTGTTGCAACTTG
1 AACTGAGTTGTTGCAACTTG
27104904 AACTGAGTTGTTGCAACTTG
1 AACTGAGTTGTTGCAACTTG
27104924 GCTCTGATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (20 bp):
AACTGAGTTGTTGCAACTTG
Found at i:27105807 original size:27 final size:26
Alignment explanation
Indices: 27105760--27105810 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
27105750 CGAGGCTGCC
*
27105760 AGATATTGTGACGAAGTCACCAGAAT
1 AGATATTGTGACGAAGCCACCAGAAT
* *
27105786 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
27105811 TTGCAGTAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.20
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAT
Found at i:27106518 original size:54 final size:54
Alignment explanation
Indices: 27106460--27106606 Score: 159
Period size: 54 Copynumber: 2.7 Consensus size: 54
27106450 AGGGGAAAAA
* * ** *
27106460 TGGTAATTTTACCCCACATGGGTATCTCGGTAATTTTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCCACAGGGGTATCTCAATAATTCTACCCTACAGGGGTATTT
* * * *
27106514 TGGTAATTCTACCCTATAGGGGTATTTCAATAATTCTACCCTATAGGGGTATTT
1 TGGTAATTCTACCCCACAGGGGTATCTCAATAATTCTACCCTACAGGGGTATTT
* ** * * *
27106568 TAGTAATTCTACCTTACAAGGGTATTTCGATAATTCTAC
1 TGGTAATTCTACCCCACAGGGGTATCTCAATAATTCTAC
27106607 AACTTATCCA
Statistics
Matches: 79, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 79 1.00
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (54 bp):
TGGTAATTCTACCCCACAGGGGTATCTCAATAATTCTACCCTACAGGGGTATTT
Found at i:27106566 original size:27 final size:27
Alignment explanation
Indices: 27106463--27106606 Score: 135
Period size: 27 Copynumber: 5.3 Consensus size: 27
27106453 GGAAAAATGG
* * * * **
27106463 TAATTTTACCCCACATGGGTATCTCGG
1 TAATTCTACCCTACAGGGGTATTTCAA
* ***
27106490 TAATTTTACCCTACAGGGGTATTTTGG
1 TAATTCTACCCTACAGGGGTATTTCAA
*
27106517 TAATTCTACCCTATAGGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCAA
* * *
27106544 TAATTCTACCCTATAGGGGTATTTTAG
1 TAATTCTACCCTACAGGGGTATTTCAA
* * *
27106571 TAATTCTACCTTACAAGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCAA
27106598 TAATTCTAC
1 TAATTCTAC
27106607 AACTTATCCA
Statistics
Matches: 100, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 100 1.00
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCAA
Found at i:27109697 original size:56 final size:56
Alignment explanation
Indices: 27109636--27109769 Score: 223
Period size: 56 Copynumber: 2.4 Consensus size: 56
27109626 GACCATGGCA
*
27109636 TCGATATATGTGTGCGAGTAAGACCACGTTTAATATGTTGGAATCGATATGTGATT
1 TCGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGAATCGATATGTGATT
* *
27109692 TCGATATATGTGTGCGAGTAAGACCACTTTTAATACGTTGGCATCGATATGTGATT
1 TCGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGAATCGATATGTGATT
* *
27109748 CCGATATATTTGTGCGAGTAAG
1 TCGATATATGTGTGCGAGTAAG
27109770 TCCCTGTCTG
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 73 1.00
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.35
Consensus pattern (56 bp):
TCGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGAATCGATATGTGATT
Found at i:27109790 original size:56 final size:56
Alignment explanation
Indices: 27109637--27109803 Score: 187
Period size: 56 Copynumber: 3.0 Consensus size: 56
27109627 ACCATGGCAT
* * * *
27109637 CGATATATGTGTGCGAGTAAGACCACGTT-TAATATGTTGGAATCGATATGTGATTT
1 CGATATATGTGTGCGAGTAAGACCAC-TTCTAAGACGTTGGCATCGATATGTGATTC
* *
27109693 CGATATATGTGTGCGAGTAAGACCACTTTTAATACGTTGGCATCGATATGTGATTC
1 CGATATATGTGTGCGAGTAAGACCACTTCTAAGACGTTGGCATCGATATGTGATTC
* * ** *
27109749 CGATATATTTGTGCGAGTAAGTCC-CTGTCTGGGACAG-TGGCATTGATATGTGATT
1 CGATATATGTGTGCGAGTAAGACCACT-TCTAAGAC-GTTGGCATCGATATGTGATT
27109804 ACATGTAAGA
Statistics
Matches: 98, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
55 4 0.04
56 93 0.95
57 1 0.01
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.35
Consensus pattern (56 bp):
CGATATATGTGTGCGAGTAAGACCACTTCTAAGACGTTGGCATCGATATGTGATTC
Done.