Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 87 of 343
Found at i:28928438 original size:81 final size:81
Alignment explanation
Indices: 28928292--28928447 Score: 226
Period size: 81 Copynumber: 1.9 Consensus size: 81
28928282 TGCTATATAA
* *
28928292 TCAACTCGCACACTTAGTGCCACATAATCAAATCTCCACACTTAGTGCTACATAGTCAACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATC-AATCTCCACACTTAGTGCAACATAGTCAAATCGCA
28928357 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * *
28928374 TCAATTCGCACACTTAGTG-CATCATATTC-ATTTCGCACACTTAGTGCAACATAGTCAAATCGC
1 TCAACTCGCACACTTAGTGCCA-CATAATCAATCTC-CACACTTAGTGCAACATAGTCAAATCGC
28928437 ACACTTAGTGC
64 ACACTTAGTGC
28928448 TGTACATTTA
Statistics
Matches: 67, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
80 4 0.06
81 39 0.58
82 24 0.36
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAATCTCCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:28932540 original size:17 final size:17
Alignment explanation
Indices: 28932518--28932550 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
28932508 GTTAGTGAAC
*
28932518 ATTGTCGTTGCATTTTT
1 ATTGTCATTGCATTTTT
28932535 ATTGTCATTGCATTTT
1 ATTGTCATTGCATTTT
28932551 AATGTTAGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.12, G:0.15, T:0.58
Consensus pattern (17 bp):
ATTGTCATTGCATTTTT
Found at i:28933116 original size:11 final size:11
Alignment explanation
Indices: 28933096--28933126 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
28933086 CTTTTTCACA
*
28933096 AAAAAAAGAAG
1 AAAAATAGAAG
28933107 AAAAATAGAAG
1 AAAAATAGAAG
28933118 AAAAATAGA
1 AAAAATAGA
28933127 CATATATTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.77, C:0.00, G:0.16, T:0.06
Consensus pattern (11 bp):
AAAAATAGAAG
Found at i:28937072 original size:5 final size:5
Alignment explanation
Indices: 28937053--28937127 Score: 50
Period size: 5 Copynumber: 15.2 Consensus size: 5
28937043 TTCGGCTATG
* *
28937053 AGAGA A-AGT AGAGA AGAGA AGAAA AGAAGA AGAGAA AGTAGA AGAG-
1 AGAGA AGAGA AGAGA AGAGA AGAGA AG-AGA AGAG-A AG-AGA AGAGA
* * *
28937099 A-AGT AGAGA AGAG- AGAGA AAAGA AAAGA A
1 AGAGA AGAGA AGAGA AGAGA AGAGA AGAGA A
28937128 AAAGAAGAAG
Statistics
Matches: 57, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
3 2 0.04
4 9 0.16
5 34 0.60
6 10 0.18
7 2 0.04
ACGTcount: A:0.63, C:0.00, G:0.33, T:0.04
Consensus pattern (5 bp):
AGAGA
Found at i:28937083 original size:11 final size:11
Alignment explanation
Indices: 28937069--28937141 Score: 64
Period size: 11 Copynumber: 6.8 Consensus size: 11
28937059 AGTAGAGAAG
28937069 AGAAGAAAAGA
1 AGAAGAAAAGA
*
28937080 AGAAGAGAAAGT
1 AGAAGA-AAAGA
* *
28937092 AGAAGAGAAGT
1 AGAAGAAAAGA
*
28937103 AG-AGAAGAG-
1 AGAAGAAAAGA
28937112 AG-AGAAAAGA
1 AGAAGAAAAGA
28937122 A-AAGAAAAAGA
1 AGAAG-AAAAGA
28937133 AGAAGAAAA
1 AGAAGAAAA
28937142 AACCTATATC
Statistics
Matches: 52, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
9 8 0.15
10 8 0.15
11 23 0.44
12 13 0.25
ACGTcount: A:0.67, C:0.00, G:0.30, T:0.03
Consensus pattern (11 bp):
AGAAGAAAAGA
Found at i:28937103 original size:41 final size:42
Alignment explanation
Indices: 28937053--28937138 Score: 131
Period size: 41 Copynumber: 2.1 Consensus size: 42
28937043 TTCGGCTATG
* *
28937053 AGAGAAAGTAGAGAAGAGA-AGAAAAGAAGAAGAGAAAGTAGA
1 AGAGAAAGTAGAGAAGAGAGAGAAAAGAA-AAGAAAAAGAAGA
28937095 AGAG-AAGTAGAGAAGAGAGAGAAAAGAAAAGAAAAAGAAGA
1 AGAGAAAGTAGAGAAGAGAGAGAAAAGAAAAGAAAAAGAAGA
28937136 AGA
1 AGA
28937139 AAAAACCTAT
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
41 28 0.68
42 13 0.32
ACGTcount: A:0.64, C:0.00, G:0.33, T:0.03
Consensus pattern (42 bp):
AGAGAAAGTAGAGAAGAGAGAGAAAAGAAAAGAAAAAGAAGA
Found at i:28941832 original size:5 final size:5
Alignment explanation
Indices: 28941822--28941850 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
28941812 GTAGATGAAG
28941822 AGAAA AGAAA AGAAA AGAAA AGAAA AGAA
1 AGAAA AGAAA AGAAA AGAAA AGAAA AGAA
28941851 GGGAAAGAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (5 bp):
AGAAA
Found at i:28941856 original size:15 final size:15
Alignment explanation
Indices: 28941795--28941867 Score: 67
Period size: 15 Copynumber: 4.7 Consensus size: 15
28941785 GGCTATGGGG
28941795 GAAAAGAAGAAGAGAAA
1 GAAAAGAAG-AGA-AAA
* *
28941812 GTAGATGAAGAGAAAA
1 G-AAAAGAAGAGAAAA
*
28941828 GAAAAGAAAAGAAAA
1 GAAAAGAAGAGAAAA
*
28941843 GAAAAGAAG-GGAAA
1 GAAAAGAAGAGAAAA
28941857 GAATAAGAAGA
1 GAA-AAGAAGA
28941868 AAGGAAGTAG
Statistics
Matches: 46, Mismatches: 7, Indels: 7
0.77 0.12 0.12
Matches are distributed among these distances:
14 7 0.15
15 25 0.54
16 4 0.09
17 4 0.09
18 6 0.13
ACGTcount: A:0.67, C:0.00, G:0.29, T:0.04
Consensus pattern (15 bp):
GAAAAGAAGAGAAAA
Found at i:28942883 original size:15 final size:15
Alignment explanation
Indices: 28942846--28942874 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
28942836 ATTTCCTATC
28942846 TAATAATAATAATTA
1 TAATAATAATAATTA
28942861 TAATAATAATAATT
1 TAATAATAATAATT
28942875 TTATAAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
TAATAATAATAATTA
Found at i:28942916 original size:25 final size:26
Alignment explanation
Indices: 28942861--28942922 Score: 81
Period size: 25 Copynumber: 2.4 Consensus size: 26
28942851 ATAATAATTA
*
28942861 TAATAATAATAATTTTATAAATATATC
1 TAATAATAA-AAATTTATAAATATATC
* *
28942888 TAATAATAAAAATTTA-AAATATCTG
1 TAATAATAAAAATTTATAAATATATC
28942913 TAATAATAAA
1 TAATAATAAA
28942923 TACAATAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
25 17 0.53
26 6 0.19
27 9 0.28
ACGTcount: A:0.56, C:0.03, G:0.02, T:0.39
Consensus pattern (26 bp):
TAATAATAAAAATTTATAAATATATC
Found at i:28948154 original size:48 final size:48
Alignment explanation
Indices: 28948083--28948400 Score: 394
Period size: 48 Copynumber: 6.6 Consensus size: 48
28948073 AAATGAGATT
28948083 CTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGC
1 CTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGC
* **
28948131 CTGTGTAAGACCATGTCTGGGACATGGCAT-GAGCGATAATATATGTTT
1 CTGTGTAAGACCATGTCTGGGACATGGCATCG-GCGATGATATATGTGC
* * *
28948179 CTGTGTAAGACCATGTCTGGGACATGGCATTGACGATGTTATATGTGC
1 CTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGC
* * *
28948227 ATGTGTAAAACCATGTCTGGGACATGGCATCGGCGATGATATATGTGG
1 CTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGC
* * *
28948275 CTGTGTAAGACTATGTCTGGGACATGGCATCGGTGATTATATATGTGC
1 CTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGC
* * * * *
28948323 CAT-TGTAAGACCATGTCTGGGACATGGAATTTGTGCTGAT-ATGTATAT-T
1 C-TGTGTAAGACCATGTCTGGGACATGGCA-TCG-GC-GATGATATATGTGC
*
28948372 C-ATGTAAGACCATGTCTGGGACATGGCAT
1 CTGTGTAAGACCATGTCTGGGACATGGCAT
28948401 TGGTACATTA
Statistics
Matches: 235, Mismatches: 28, Indels: 15
0.85 0.10 0.05
Matches are distributed among these distances:
47 2 0.01
48 218 0.93
49 5 0.02
50 7 0.03
51 3 0.01
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.31
Consensus pattern (48 bp):
CTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGC
Found at i:28948344 original size:144 final size:146
Alignment explanation
Indices: 28948080--28948400 Score: 453
Period size: 144 Copynumber: 2.2 Consensus size: 146
28948070 GCTAAATGAG
28948080 ATTC-TGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCTGTGTAAGACCA
1 ATTCATGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCTGTGTAAGACCA
** *
28948144 TGTCTGGGACATGGCATGAGCGATAATATATGTTTCTGTGTAAGACCATGTCTGGGACATGGCA-
66 TGTCTGGGACATGGCATGAGCGATAATATATGTGCCTGTGTAAGACCATGTCTGGGACATGGAAT
*
28948208 TTG-AC-GATGT-TAT
131 TTGTACTGATATGTAT
* *
28948221 ATGTGCATGTGTAAAACCATGTCTGGGACATGGCATCGGCGATGATATATGTGGCTGTGTAAGAC
1 AT-T-CATGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCTGTGTAAGAC
* * *
28948286 TATGTCTGGGACATGGCATCG-GTGATTATATATGTGCCAT-TGTAAGACCATGTCTGGGACATG
64 CATGTCTGGGACATGGCAT-GAGCGATAATATATGTGCC-TGTGTAAGACCATGTCTGGGACATG
*
28948349 GAATTTGTGCTGATATGTAT
127 GAATTTGTACTGATATGTAT
28948369 ATTCA--TGTAAGACCATGTCTGGGACATGGCAT
1 ATTCATGTGTAAGACCATGTCTGGGACATGGCAT
28948401 TGGTACATTA
Statistics
Matches: 160, Mismatches: 11, Indels: 15
0.86 0.06 0.08
Matches are distributed among these distances:
141 2 0.01
142 1 0.01
143 1 0.01
144 138 0.86
145 5 0.03
146 3 0.02
147 5 0.03
148 5 0.03
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (146 bp):
ATTCATGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCTGTGTAAGACCA
TGTCTGGGACATGGCATGAGCGATAATATATGTGCCTGTGTAAGACCATGTCTGGGACATGGAAT
TTGTACTGATATGTAT
Found at i:28952569 original size:61 final size:61
Alignment explanation
Indices: 28952454--28952570 Score: 153
Period size: 61 Copynumber: 1.9 Consensus size: 61
28952444 ATGTGAAATC
* *
28952454 AACACGGCCTGCACTTCCGTACACGGCCAAACCACATGCCCGTGTAGTTCTAGCAAGCTCT
1 AACACGGCCTGCACTTCCCTACACGGCCAAACCACATGCCCGTGTACTTCTAGCAAGCTCT
* * ** * * *
28952515 AACACGGCTTGGACTTCCCTACACGGGTAGACCACATGCCCGTGTCCTTTTAGCAA
1 AACACGGCCTGCACTTCCCTACACGGCCAAACCACATGCCCGTGTACTTCTAGCAA
28952571 AATCAGGCAC
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
61 47 1.00
ACGTcount: A:0.24, C:0.34, G:0.21, T:0.21
Consensus pattern (61 bp):
AACACGGCCTGCACTTCCCTACACGGCCAAACCACATGCCCGTGTACTTCTAGCAAGCTCT
Found at i:28952666 original size:13 final size:13
Alignment explanation
Indices: 28952648--28952672 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
28952638 AAGAAATCGA
28952648 ACACGGGCGTGTC
1 ACACGGGCGTGTC
28952661 ACACGGGCGTGT
1 ACACGGGCGTGT
28952673 TCCTGTCGAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.28, G:0.40, T:0.16
Consensus pattern (13 bp):
ACACGGGCGTGTC
Found at i:28957806 original size:44 final size:44
Alignment explanation
Indices: 28957753--28958232 Score: 582
Period size: 44 Copynumber: 10.9 Consensus size: 44
28957743 ATCTCTTATT
* *
28957753 TTCGATCTGCTCTCTACCAATACAGAGATGCCAAATCTGCTATC
1 TTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCTATC
* *
28957797 TTTGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTACTATC
1 TTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCTATC
*
28957841 TTCGATCTGCTCTCCGCCAATACAGAGACGCCAAATCTGCTATC
1 TTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCTATC
* * * **
28957885 TTCGATCTGCTCTCCGCCAATACAGTGATGCCAAATCTATTATC
1 TTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCTATC
* * * * *
28957929 TTCGATCTTCCCTCTGTCAACACAGAGATGCCAAATCTGCTATC
1 TTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCTATC
* * * * *
28957973 TTTGATCTGCCCTTTGACAATACAGACACGCCAAATCTGCTATC
1 TTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCTATC
* * * * * *
28958017 TTCGATCTACTCCCTACCAATATAGATACGCCAAATCTGTTATC
1 TTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCTATC
* * *
28958061 TTCGATCTGCTCTATGCTAATACAGAGATGCCAAATCTGCTATC
1 TTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCTATC
* * ** * * **
28958105 CTCTATCTATTCTCTGCTAATACAGAGACGTCAAATCTATTATC
1 TTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCTATC
*
28958149 TTCGATCTGCTCTCCGCCAATACAGAGACGCCAAATCTGCTATC
1 TTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCTATC
* * * *
28958193 TTCAATCTGCTCTCTGTCAACACAGAGATGCCAAATCTGC
1 TTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGC
28958233 AAGATTCGCC
Statistics
Matches: 368, Mismatches: 68, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 368 1.00
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.30
Consensus pattern (44 bp):
TTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCTATC
Found at i:28970202 original size:130 final size:128
Alignment explanation
Indices: 28969810--28970221 Score: 325
Period size: 131 Copynumber: 3.2 Consensus size: 128
28969800 TTGCCTCACC
* * * * * * *
28969810 TTAG-AAA-ATGAGTGAAATCCCGAAGAGATATTCGATTATTTTTAACAAACGAGAGATTGCAAC
1 TTAGAAAACATGAATGAAATACCAAAGAAATATTCGATT-GTTTTAACAAACG-GAAATCGCAAC
* * *
28969873 CCAGTATGATAGGGCACT-ATTCCCCAAATTGCCAAACATCGAACATTTCCTTTGTTTTAAA-GA
64 CCAGTACGATAGGGCA-TGATT-CCCAAATTGCCAAACATCGAACA-TGCCTTCGTTTTAAAGGA
28969936 TTTT
126 -TTT
* * * * ** *
28969940 TTAGAAAACGTGAGTGAAATTCCAAAGGAACCTTCGATTGTTTTAAGCAAACGAAAATGCGCAAC
1 TTAGAAAACATGAATGAAATACCAAAGAAATATTCGATTGTTTTAA-CAAACGGAAAT-CGCAAC
* ** * * * * * *
28970005 CCAGCACGATAGGGCGCGATTCTCAAATCGCCAGACATCGAAGATCGCTTTCGTTTTGAGAGG-T
64 CCAGTACGATAGGGCATGATTCCCAAATTGCCAAACATCGAACAT-GCCTTCGTTTT-AAAGGAT
28970069 TT
127 TT
* * *
28970071 TTA-ATAAACATTAATGAAA-ACCGAAAGAAATATTCGATTGTTTTGAACAAATGGAAATCACAA
1 TTAGA-AAACATGAATGAAATACC-AAAGAAATATTCGATTGTTTT-AACAAACGGAAATCGCAA
* **
28970134 CCCAGTACGATAGGGCATGATTCCCGAATTGTAAAACATCGAACACTGCCTTCGTTTTAAAGGAT
63 CCCAGTACGATAGGGCATGATTCCCAAATTGCCAAACATCGAACA-TGCCTTCGTTTTAAAGGA-
28970199 TTT
126 TTT
* * *
28970202 TTTGAATACATGAGTGAAAT
1 TTAGAAAACATGAATGAAAT
28970222 TTTGGAGGGA
Statistics
Matches: 217, Mismatches: 49, Indels: 30
0.73 0.17 0.10
Matches are distributed among these distances:
129 4 0.02
130 57 0.26
131 100 0.46
132 55 0.25
133 1 0.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (128 bp):
TTAGAAAACATGAATGAAATACCAAAGAAATATTCGATTGTTTTAACAAACGGAAATCGCAACCC
AGTACGATAGGGCATGATTCCCAAATTGCCAAACATCGAACATGCCTTCGTTTTAAAGGATTT
Found at i:28971697 original size:18 final size:18
Alignment explanation
Indices: 28971674--28971708 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
28971664 AAATAAATAT
*
28971674 ATATATATTTACATATAG
1 ATATATATATACATATAG
28971692 ATATATATATACATATA
1 ATATATATATACATATA
28971709 TATCAGTGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.49, C:0.06, G:0.03, T:0.43
Consensus pattern (18 bp):
ATATATATATACATATAG
Found at i:28973620 original size:40 final size:40
Alignment explanation
Indices: 28973530--28973754 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
28973520 TTGAATGATG
* * * *
28973530 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
28973570 TCCGGACTAAGAT-TCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
28973610 TCTGGGCTAAG-CCTGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
28973649 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
28973689 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
28973730 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
28973755 AACGAGGAGC
Statistics
Matches: 159, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
39 31 0.19
40 118 0.74
41 10 0.06
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:28973772 original size:80 final size:79
Alignment explanation
Indices: 28973624--28973777 Score: 204
Period size: 80 Copynumber: 1.9 Consensus size: 79
28973614 GGCTAAGCCT
* ** *
28973624 GAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 GAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAA
28973689 TCCGGGTTAAGTCCC
66 TCC-GGTTAAGTCCC
* *
28973704 GAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTA
1 GAAGGCATTGGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTA
*
28973767 TATCCGGTTAA
64 AATCCGGTTAA
28973778 ATTCTGAAGG
Statistics
Matches: 65, Mismatches: 7, Indels: 5
0.84 0.09 0.06
Matches are distributed among these distances:
79 7 0.11
80 56 0.86
81 2 0.03
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (79 bp):
GAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAA
TCCGGTTAAGTCCC
Found at i:28976207 original size:22 final size:23
Alignment explanation
Indices: 28976177--28976223 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
28976167 TTATAATTTA
28976177 TTGGTTTTATGTTTATT-GTTTGT
1 TTGGTTTTAT-TTTATTGGTTTGT
*
28976200 TTGG-TTTATTTTTTTGGTTTGT
1 TTGGTTTTATTTTATTGGTTTGT
28976222 TT
1 TT
28976224 TGTGTTTGCA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 5 0.23
22 13 0.59
23 4 0.18
ACGTcount: A:0.06, C:0.00, G:0.21, T:0.72
Consensus pattern (23 bp):
TTGGTTTTATTTTATTGGTTTGT
Found at i:28979701 original size:26 final size:26
Alignment explanation
Indices: 28979672--28979723 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
28979662 ATTTATTAAA
28979672 GACTTTTTTAAAATAGCTAAGCCTTT
1 GACTTTTTTAAAATAGCTAAGCCTTT
28979698 GACTTTTTTAAAATAGCTAAGCCTTT
1 GACTTTTTTAAAATAGCTAAGCCTTT
28979724 TAATTTCGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.15, G:0.12, T:0.42
Consensus pattern (26 bp):
GACTTTTTTAAAATAGCTAAGCCTTT
Found at i:28986761 original size:55 final size:53
Alignment explanation
Indices: 28986575--28986829 Score: 227
Period size: 55 Copynumber: 4.8 Consensus size: 53
28986565 ACGAAGGTAC
* * * * *
28986575 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA
* * *
28986624 CTTACCATTGCCATGTCTTGACATGGTCTTACTTGGTATCCTTGCCTTATGAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAA
* * *
28986677 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCC-TTGCCTTAT-G-AA
* ***
28986732 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA
* * * *
28986785 CCTTACCAATTGCCATGCCTTGGCATGGTCTTAGATGGTATCCTT
1 -CTTACCAA-TGCCATGTCTTGACATGGTCTTACATGGGATCCTT
28986830 AAACCCTAAT
Statistics
Matches: 172, Mismatches: 23, Indels: 16
0.82 0.11 0.08
Matches are distributed among these distances:
49 38 0.22
50 1 0.01
52 2 0.01
53 48 0.28
54 10 0.06
55 71 0.41
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (53 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAA
Found at i:28986774 original size:108 final size:110
Alignment explanation
Indices: 28986622--28986822 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
28986612 ATCCTTTTGA
* * *
28986622 AACTTACCATTGCCATGTCTTGACATGGTCTTACTTGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
28986685 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
28986730 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
*
28986795 TGCCATGCCTTGGCATGGTCTTAGATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
28986823 TATCCTTAAA
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.58
109 7 0.08
110 27 0.33
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:28993746 original size:16 final size:16
Alignment explanation
Indices: 28993727--28993757 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
28993717 CTTCTTCACT
28993727 TACTTACTTACTTAAA
1 TACTTACTTACTTAAA
28993743 TACTTACTTACTTAA
1 TACTTACTTACTTAA
28993758 TCAAATTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.35, C:0.19, G:0.00, T:0.45
Consensus pattern (16 bp):
TACTTACTTACTTAAA
Found at i:28993763 original size:20 final size:20
Alignment explanation
Indices: 28993724--28993763 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
28993714 AAACTTCTTC
* *
28993724 ACTTACTTACTTACTTAAAT
1 ACTTACTTACTTAATCAAAT
28993744 ACTTACTTACTTAATCAAAT
1 ACTTACTTACTTAATCAAAT
28993764 TTATTAATAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.38, C:0.20, G:0.00, T:0.42
Consensus pattern (20 bp):
ACTTACTTACTTAATCAAAT
Found at i:28996730 original size:21 final size:21
Alignment explanation
Indices: 28996706--28996747 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
28996696 TTAAGGTGTA
28996706 TGCCTAGCAATTGCACCTTAG
1 TGCCTAGCAATTGCACCTTAG
*
28996727 TGCCTAGCAATTGTACCTTAG
1 TGCCTAGCAATTGCACCTTAG
28996748 CGCCAAATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (21 bp):
TGCCTAGCAATTGCACCTTAG
Found at i:28999002 original size:7 final size:7
Alignment explanation
Indices: 28998983--28999066 Score: 55
Period size: 7 Copynumber: 12.1 Consensus size: 7
28998973 AAACTATGGC
28998983 CCAT-AA
1 CCATAAA
*
28998989 CCTTAAA
1 CCATAAA
28998996 CCATAAA
1 CCATAAA
28999003 CC-TCAAA
1 CCAT-AAA
*
28999010 CCCTAAA
1 CCATAAA
*
28999017 CCCTAAA
1 CCATAAA
*
28999024 ACATAAA
1 CCATAAA
28999031 CCATAAA
1 CCATAAA
** *
28999038 TTATTAA
1 CCATAAA
* *
28999045 CCTTACA
1 CCATAAA
*
28999052 CCCTAAA
1 CCATAAA
28999059 CCATAAA
1 CCATAAA
28999066 C
1 C
28999067 TACAACTATT
Statistics
Matches: 59, Mismatches: 16, Indels: 5
0.74 0.20 0.06
Matches are distributed among these distances:
6 4 0.07
7 54 0.92
8 1 0.02
ACGTcount: A:0.48, C:0.32, G:0.00, T:0.20
Consensus pattern (7 bp):
CCATAAA
Found at i:28999967 original size:36 final size:40
Alignment explanation
Indices: 28999927--29000004 Score: 92
Period size: 39 Copynumber: 2.0 Consensus size: 40
28999917 TCAAGTTGCT
* *
28999927 ATGT-ACA-TTTTGTGGCATTTT-TT-CAAAGCGCTACTA
1 ATGTAACACTTTTGCGGCATTTTATTCCAAAGCGCCACTA
*
28999963 ATGTAACACTTTTTGCGGCATTTTATTCCTAAGCGCCACTA
1 ATGTAACAC-TTTTGCGGCATTTTATTCCAAAGCGCCACTA
29000004 A
1 A
29000005 AATTTTAATT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
36 4 0.12
37 3 0.09
39 13 0.38
40 2 0.06
41 12 0.35
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (40 bp):
ATGTAACACTTTTGCGGCATTTTATTCCAAAGCGCCACTA
Found at i:29010985 original size:26 final size:26
Alignment explanation
Indices: 29010949--29011002 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
29010939 GTTGTGGTTG
*
29010949 ATAGATTAACTAAATCAGCGCATTTT
1 ATAGATTAACTAAATCAGCCCATTTT
29010975 ATAGATTAACTAAATCAGCCCATTTT
1 ATAGATTAACTAAATCAGCCCATTTT
29011001 AT
1 AT
29011003 TCTAGTATGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.39, C:0.17, G:0.09, T:0.35
Consensus pattern (26 bp):
ATAGATTAACTAAATCAGCCCATTTT
Found at i:29014392 original size:93 final size:93
Alignment explanation
Indices: 29014264--29014435 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
29014254 GCCCATAAGT
* * * *
29014264 GAACTCGGACTCAACTCAATAAGCTTGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTTCGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
29014329 CGAGCTCGGATGCCTAGTTACGTCTCTC
66 CGAGCTCGGATGCCTAGTTACGTCTCTC
*
29014357 GAACTCGGACTCAACTCAACGAG-TTCCGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACAAGCTT-CGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
29014421 ACGAGTTCGGATGCC
65 ACGAGCTCGGATGCC
29014436 CAAATACCCT
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTTCGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACGTCTCTC
Found at i:29014424 original size:46 final size:44
Alignment explanation
Indices: 29014256--29014429 Score: 161
Period size: 46 Copynumber: 3.8 Consensus size: 44
29014246 TGTAACCCGC
** * *
29014256 CCATAAGTGAACTCGGACTCAACTCAATAAGCTTGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TT-CGCATTCGCAT
* * *
29014302 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGCATTCGC-A--T
* * ***
29014348 ACGTCTCTCGAACTCGGACTCAACTCAACGAGTTCCGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTT-CG-CATTCGCAT
29014395 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
29014430 GATGCCCAAA
Statistics
Matches: 101, Mismatches: 20, Indels: 15
0.74 0.15 0.11
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 3 0.03
46 58 0.57
47 28 0.28
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (44 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGCATTCGCAT
Found at i:29014450 original size:46 final size:45
Alignment explanation
Indices: 29014307--29014450 Score: 123
Period size: 46 Copynumber: 3.1 Consensus size: 45
29014297 CGCATCCATA
* * * *
29014307 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACGTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA-ATAC-CCT
* * * * *
29014354 -CTCGAACTCGGACTCAACTCAACGAGTTCCGACATTCGC-AT-CCAT
1 AGT-GAACTCGGACTCAACTCAACGAGTT-CG-GATGCCCAATACCCT
29014399 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATACCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AATACCCT
29014446 AGTGA
1 AGTGA
29014451 TATGTCACTT
Statistics
Matches: 75, Mismatches: 14, Indels: 17
0.71 0.13 0.16
Matches are distributed among these distances:
44 4 0.05
45 3 0.04
46 34 0.45
47 29 0.39
48 2 0.03
49 3 0.04
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATACCCT
Found at i:29016919 original size:27 final size:27
Alignment explanation
Indices: 29016886--29016949 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
29016876 CCCCAAGGTA
*
29016886 GGTAAAATGACCAAAATACCCCTATAG
1 GGTAAAATGACCAAAATACCCCTAGAG
* ***
29016913 GGTAAAATGACTATTTTACCCCTAGAG
1 GGTAAAATGACCAAAATACCCCTAGAG
29016940 GGT-AAATGAC
1 GGTAAAATGAC
29016950 TGATTTGTGC
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 7 0.22
27 25 0.78
ACGTcount: A:0.39, C:0.19, G:0.19, T:0.23
Consensus pattern (27 bp):
GGTAAAATGACCAAAATACCCCTAGAG
Found at i:29016955 original size:27 final size:27
Alignment explanation
Indices: 29016902--29016955 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
29016892 ATGACCAAAA
*
29016902 TACCCCTATAGGGTAAAATGACTATTT
1 TACCCCTAGAGGGTAAAATGACTATTT
29016929 TACCCCTAGAGGGT-AAATGACTGATTT
1 TACCCCTAGAGGGTAAAATGACT-ATTT
29016956 GTGCTATGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 8 0.32
27 17 0.68
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (27 bp):
TACCCCTAGAGGGTAAAATGACTATTT
Found at i:29017149 original size:20 final size:20
Alignment explanation
Indices: 29017126--29017254 Score: 186
Period size: 20 Copynumber: 6.5 Consensus size: 20
29017116 GTGGACCTAC
29017126 TGATGGCTTTGTGCCACTAT
1 TGATGGCTTTGTGCCACTAT
*
29017146 TGATGGCTTTGTGCCGCTAT
1 TGATGGCTTTGTGCCACTAT
* *
29017166 TGATGTCTTTGTGCCACTAG
1 TGATGGCTTTGTGCCACTAT
*
29017186 TGATGGCTTTGTGCCACTAG
1 TGATGGCTTTGTGCCACTAT
*
29017206 TGATGGCTTTGTGACACTAT
1 TGATGGCTTTGTGCCACTAT
* *
29017226 TGATGGCTTTGTGCCCCTAC
1 TGATGGCTTTGTGCCACTAT
*
29017246 CGATGGCTT
1 TGATGGCTT
29017255 CGAGCCGCTA
Statistics
Matches: 98, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 98 1.00
ACGTcount: A:0.14, C:0.21, G:0.27, T:0.38
Consensus pattern (20 bp):
TGATGGCTTTGTGCCACTAT
Found at i:29017265 original size:20 final size:20
Alignment explanation
Indices: 29017227--29017266 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
29017217 TGACACTATT
* *
29017227 GATGGCTTTGTGCCCCTACC
1 GATGGCTTCGAGCCCCTACC
*
29017247 GATGGCTTCGAGCCGCTACC
1 GATGGCTTCGAGCCCCTACC
29017267 CATAGCTTTG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.12, C:0.35, G:0.28, T:0.25
Consensus pattern (20 bp):
GATGGCTTCGAGCCCCTACC
Found at i:29017275 original size:60 final size:60
Alignment explanation
Indices: 29017151--29017278 Score: 139
Period size: 60 Copynumber: 2.1 Consensus size: 60
29017141 ACTATTGATG
* * * ** * * *** *
29017151 GCTTTGTGCCGCTATTGATGTCTTTGTGCCACTAGTGATGGCTTTGTGCCACTAGTGATG
1 GCTTTGTGACACTATTGATGGCTTTGTGCCACTACCGATGGCTTCGAGCCACTACCCATA
* *
29017211 GCTTTGTGACACTATTGATGGCTTTGTGCCCCTACCGATGGCTTCGAGCCGCTACCCATA
1 GCTTTGTGACACTATTGATGGCTTTGTGCCACTACCGATGGCTTCGAGCCACTACCCATA
29017271 GCTTTGTG
1 GCTTTGTG
29017279 CCATATACTG
Statistics
Matches: 55, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
60 55 1.00
ACGTcount: A:0.14, C:0.24, G:0.27, T:0.35
Consensus pattern (60 bp):
GCTTTGTGACACTATTGATGGCTTTGTGCCACTACCGATGGCTTCGAGCCACTACCCATA
Found at i:29017342 original size:26 final size:25
Alignment explanation
Indices: 29017290--29017365 Score: 71
Period size: 26 Copynumber: 2.9 Consensus size: 25
29017280 CATATACTGA
** *
29017290 TACTGGCAGCTTTGCTATGTTACTAT
1 TACTGG-AGCTTTGCTGCGATACTAT
*
29017316 TACTGGTAGCTTTGCTGCGATATTAT
1 TACTGG-AGCTTTGCTGCGATACTAT
* *
29017342 TACTAGGAGCTATGCTGCAATACT
1 TACT-GGAGCTTTGCTGCGATACT
29017366 GGTGTGTTGG
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
26 39 0.95
27 2 0.05
ACGTcount: A:0.22, C:0.18, G:0.21, T:0.38
Consensus pattern (25 bp):
TACTGGAGCTTTGCTGCGATACTAT
Found at i:29018694 original size:9 final size:9
Alignment explanation
Indices: 29018664--29018700 Score: 58
Period size: 9 Copynumber: 4.1 Consensus size: 9
29018654 TATATGCAAA
29018664 TTTTGTG-T
1 TTTTGTGAT
29018672 ATTTTGTGAT
1 -TTTTGTGAT
29018682 TTTTGTGAT
1 TTTTGTGAT
29018691 TTTTGTGAT
1 TTTTGTGAT
29018700 T
1 T
29018701 AAGGACTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 26 0.96
10 1 0.04
ACGTcount: A:0.11, C:0.00, G:0.22, T:0.68
Consensus pattern (9 bp):
TTTTGTGAT
Found at i:29034705 original size:22 final size:22
Alignment explanation
Indices: 29034677--29034727 Score: 102
Period size: 22 Copynumber: 2.3 Consensus size: 22
29034667 TCAAAATGCT
29034677 TACACATAATAGCCTTAGACAA
1 TACACATAATAGCCTTAGACAA
29034699 TACACATAATAGCCTTAGACAA
1 TACACATAATAGCCTTAGACAA
29034721 TACACAT
1 TACACAT
29034728 TCCTGAGCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.45, C:0.24, G:0.08, T:0.24
Consensus pattern (22 bp):
TACACATAATAGCCTTAGACAA
Found at i:29039267 original size:47 final size:47
Alignment explanation
Indices: 29039213--29039405 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
29039203 TTAGGATTTT
** * *
29039213 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
29039260 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
29039307 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
29039354 ATGTG-TGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
29039400 ATGTGA
1 ATGTGA
29039406 AATATGTATG
Statistics
Matches: 133, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
46 40 0.30
47 93 0.70
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:29039313 original size:22 final size:22
Alignment explanation
Indices: 29039242--29039313 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
29039232 GTATATATGA
29039242 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
29039264 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
29039289 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
29039311 GAT
1 GAT
29039314 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:29039359 original size:24 final size:24
Alignment explanation
Indices: 29039286--29039361 Score: 70
Period size: 24 Copynumber: 3.2 Consensus size: 24
29039276 CATGCATATA
29039286 TGTGATAAGGCCGAATGGCCAATG
1 TGTGATAAGGCCGAATGGCCAATG
* * *
29039310 TGATGA-ATGTG-AGCAT-G-CATATG
1 TG-TGATAAG-GCCGAATGGCCA-ATG
29039333 TGTGATAAGGCCGAATGGCCAATG
1 TGTGATAAGGCCGAATGGCCAATG
29039357 TGTGA
1 TGTGA
29039362 ATATGAACAT
Statistics
Matches: 39, Mismatches: 6, Indels: 14
0.66 0.10 0.24
Matches are distributed among these distances:
22 6 0.15
23 11 0.28
24 16 0.41
25 6 0.15
ACGTcount: A:0.29, C:0.13, G:0.33, T:0.25
Consensus pattern (24 bp):
TGTGATAAGGCCGAATGGCCAATG
Found at i:29039478 original size:50 final size:50
Alignment explanation
Indices: 29039370--29039484 Score: 167
Period size: 50 Copynumber: 2.3 Consensus size: 50
29039360 GAATATGAAC
* *
29039370 ATGCATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
1 ATGCGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAGAT
* * *
29039420 ATGTGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGCGAT
1 ATGCGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAGAT
*
29039470 GTGCGTATATTGTGG
1 ATGCGTATA-TGTGG
29039485 CCGAACGACC
Statistics
Matches: 57, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
50 52 0.91
51 5 0.09
ACGTcount: A:0.30, C:0.08, G:0.30, T:0.31
Consensus pattern (50 bp):
ATGCGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAGAT
Found at i:29039718 original size:37 final size:37
Alignment explanation
Indices: 29039610--29039718 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
29039600 GGAAATATAT
*
29039610 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
29039647 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
29039684 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
29039719 CGTCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:29041020 original size:23 final size:23
Alignment explanation
Indices: 29040994--29041060 Score: 56
Period size: 23 Copynumber: 3.2 Consensus size: 23
29040984 GTGATATATG
29040994 GCTAAGTCCCGAAGAGCATTCGT
1 GCTAAGTCCCGAAGAGCATTCGT
* * * *
29041017 GCT-AGT---G-ATA-TATCCGG
1 GCTAAGTCCCGAAGAGCATTCGT
29041034 GCTAAGTCCCGAAGAGCATTCGT
1 GCTAAGTCCCGAAGAGCATTCGT
29041057 GCTA
1 GCTA
29041061 GTGATGTATC
Statistics
Matches: 30, Mismatches: 8, Indels: 12
0.60 0.16 0.24
Matches are distributed among these distances:
17 7 0.23
18 5 0.17
19 1 0.03
21 1 0.03
22 5 0.17
23 11 0.37
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (23 bp):
GCTAAGTCCCGAAGAGCATTCGT
Found at i:29041282 original size:157 final size:155
Alignment explanation
Indices: 29040983--29041362 Score: 647
Period size: 157 Copynumber: 2.4 Consensus size: 155
29040973 GAGAATTGAG
29040983 AGTGATATATGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAG
1 AGTGATATA-GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAG
*
29041048 AGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCTGCTAGTGATGTATCCGG
65 AGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCTGCTAGTGATGTATCCGG
29041113 GCTAAGTCCCGAAGAGCATTCGTGCT
130 GCTAAGTCCCGAAGAGCATTCGTGCT
*
29041139 AGTGATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAA
1 AGTGATAT--AGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAA
29041204 GAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCC
64 GAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCGAAGAGCATTC-TGCTAGTGATGTATCC
29041269 GGGCTAAGT-CCGAAGAGCATTCGTGCT
128 GGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * * *
29041296 AGTGATATATGCTAA-ACCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGA
1 AGTGATATAGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGA
29041360 GCA
66 GCA
29041363 ATCATGCTGG
Statistics
Matches: 213, Mismatches: 8, Indels: 8
0.93 0.03 0.03
Matches are distributed among these distances:
154 48 0.23
155 5 0.02
156 8 0.04
157 127 0.60
158 25 0.12
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (155 bp):
AGTGATATAGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGA
GCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCTGCTAGTGATGTATCCGGG
CTAAGTCCCGAAGAGCATTCGTGCT
Found at i:29041374 original size:40 final size:40
Alignment explanation
Indices: 29040993--29041362 Score: 596
Period size: 40 Copynumber: 9.5 Consensus size: 40
29040983 AGTGATATAT
29040993 GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCG
1 GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCG
*
29041033 GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCG
1 GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCG
*
29041073 GGCTAAGTCCCGAAGAGCATTC-TGCTAGTGATGTATCCG
1 GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCG
29041112 GGCTAAGTCCCGAAGAGCATTCGTGCTAGTG--ATATCCG
1 GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCG
29041150 GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCG
1 GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCG
*
29041190 GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCG
1 GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCG
* *
29041230 GACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCG
1 GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCG
29041270 GGCTAAGT-CCGAAGAGCATTCGTGCTAGTGATATAT---
1 GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCG
* * *
29041306 -GCTAA-ACCCGAAGAGCATTCGTGCTGGTGTTATATCCG
1 GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCG
*
29041344 GGCTAGGTCCCGAAGAGCA
1 GGCTAAGTCCCGAAGAGCA
29041363 ATCATGCTGG
Statistics
Matches: 310, Mismatches: 11, Indels: 18
0.91 0.03 0.05
Matches are distributed among these distances:
35 31 0.10
38 37 0.12
39 70 0.23
40 172 0.55
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCG
Found at i:29041412 original size:197 final size:194
Alignment explanation
Indices: 29040993--29041375 Score: 592
Period size: 197 Copynumber: 2.0 Consensus size: 194
29040983 AGTGATATAT
* *
29040993 GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTG
1 GGCTAAGTCCAGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTCCCGAAGAGCATTCGTG
* *
29041058 CTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCTGCTAGTGATGTATCCGGGCTAAGTCCC
66 CTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCTGCTAGTGATATAT-C--GCTAAGACCC
* *
29041123 GAAGAGCATTCGTGCTAGTGATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
128 GAAGAGCATTCGTGCTAGTGATATCCGGGCTAAGTCCCGAAGAGCAATCATGCTAGTGATATATC
29041188 CG
193 CG
* *
29041190 GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTG
1 GGCTAAGTCCAGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTCCCGAAGAGCATTCGTG
29041255 CTAGTGATGTATCCGGGCTAAGT-CCGAAGAGCATTCGTGCTAGTGATATAT-GCTAA-ACCCGA
66 CTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTC-TGCTAGTGATATATCGCTAAGACCCGA
* * *
29041317 AGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
130 AGAGCATTCGTGCTAGTG--ATATCCGGGCTAAGTCCCGAAGAGCAATCATGCTAGTGA
29041376 CGTGTATTCG
Statistics
Matches: 174, Mismatches: 9, Indels: 9
0.91 0.05 0.05
Matches are distributed among these distances:
192 22 0.13
193 5 0.03
194 35 0.20
196 13 0.07
197 99 0.57
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (194 bp):
GGCTAAGTCCAGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTCCCGAAGAGCATTCGTG
CTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCTGCTAGTGATATATCGCTAAGACCCGAA
GAGCATTCGTGCTAGTGATATCCGGGCTAAGTCCCGAAGAGCAATCATGCTAGTGATATATCCG
Found at i:29045425 original size:46 final size:46
Alignment explanation
Indices: 29045329--29045511 Score: 207
Period size: 46 Copynumber: 4.1 Consensus size: 46
29045319 TAGATGTTTA
** * * *
29045329 TGATGAATGT-AATGTGTATATATGAGAT-AGCTGAATGGCCAATG
1 TGATGAATGTGAACATGCATATATGTGATAAGCCGAATGGCCAATG
*
29045373 TGATGAATGTGAACATGCATATATGTGATAAGGCCGAAT-GCCCATG
1 TGATGAATGTGAACATGCATATATGTGATAA-GCCGAATGGCCAATG
* *
29045419 TGATGAATGTGAGCA--CATATGTGTGATAAGCCGAATGGCCAATG
1 TGATGAATGTGAACATGCATATATGTGATAAGCCGAATGGCCAATG
* * *
29045463 TGATGAATATGAACATGCATATATGTGGTAAAG-CGAATGGCTAATG
1 TGATGAATGTGAACATGCATATATGTGAT-AAGCCGAATGGCCAATG
29045509 TGA
1 TGA
29045512 AATATGTATG
Statistics
Matches: 118, Mismatches: 14, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
43 7 0.06
44 42 0.36
45 14 0.12
46 46 0.39
47 9 0.08
ACGTcount: A:0.34, C:0.11, G:0.27, T:0.28
Consensus pattern (46 bp):
TGATGAATGTGAACATGCATATATGTGATAAGCCGAATGGCCAATG
Found at i:29045768 original size:34 final size:36
Alignment explanation
Indices: 29045713--29045815 Score: 140
Period size: 34 Copynumber: 2.9 Consensus size: 36
29045703 GGAAATATAT
29045713 TCCGGGTAAGACCCGATGACTACGTTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTTGGAGATTATG
* *
29045749 TCC-GGTAAGA-CCGATGACTAC-TGGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTTGGAGATTATG
* *
29045782 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGT-TGGAGATT
29045816 TCGTCTGAGC
Statistics
Matches: 58, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
33 13 0.22
34 18 0.31
35 16 0.28
36 4 0.07
37 7 0.12
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.26
Consensus pattern (36 bp):
TCCGGGTAAGACCCGATGACTACGTTGGAGATTATG
Found at i:29046980 original size:37 final size:37
Alignment explanation
Indices: 29046919--29047063 Score: 140
Period size: 36 Copynumber: 4.0 Consensus size: 37
29046909 GTGTGAGATA
* *
29046919 TATATCGGGCT-ATTCCCGAA-GCATTTGTGCGGTGT
1 TATATCCGGCTAAGTCCCGAAGGCATTTGTGCGGTGT
** * *
29046954 TATATTAGGCTAAGTCCCGAAGGCA-TTCTGC-TTGT
1 TATATCCGGCTAAGTCCCGAAGGCATTTGTGCGGTGT
*
29046989 TATATCCGAGCTAAGTCCCAAAGGCATTTG-GCTGGT-T
1 TATATCCG-GCTAAGTCCCGAAGGCATTTGTGC-GGTGT
* * *
29047026 TATACCCGGCTAAGTCCCGAAGGCATTCGTGCTGTGT
1 TATATCCGGCTAAGTCCCGAAGGCATTTGTGCGGTGT
29047063 T
1 T
29047064 TTATACGAGG
Statistics
Matches: 88, Mismatches: 14, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
35 18 0.20
36 52 0.59
37 17 0.19
38 1 0.01
ACGTcount: A:0.21, C:0.22, G:0.26, T:0.32
Consensus pattern (37 bp):
TATATCCGGCTAAGTCCCGAAGGCATTTGTGCGGTGT
Found at i:29047029 original size:72 final size:76
Alignment explanation
Indices: 29046939--29047080 Score: 195
Period size: 72 Copynumber: 1.9 Consensus size: 76
29046929 TATTCCCGAA
** *
29046939 GCATTTGTGCGGTGTTATATTAGGCTAAGTCCCGAAGGCATTC-TGCT-TGTTATATCCGA-GCT
1 GCATTTGTGCGGTGTTATACCAGGCTAAGTCCCGAAGGCATTCGTGCTGTGTTATATACGAGGCT
29047001 AAGTCCCAAAG
66 AAGTCCCAAAG
* *
29047012 GCATTTG-GCTGGT-TTATACCCGGCTAAGTCCCGAAGGCATTCGTGCTGTGTTTTATACGAGGC
1 GCATTTGTGC-GGTGTTATACCAGGCTAAGTCCCGAAGGCATTCGTGCTGTGTTATATACGAGGC
29047075 TAAGTC
65 TAAGTC
29047081 TCGACGGCTT
Statistics
Matches: 60, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
72 28 0.47
73 14 0.23
74 10 0.17
75 8 0.13
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (76 bp):
GCATTTGTGCGGTGTTATACCAGGCTAAGTCCCGAAGGCATTCGTGCTGTGTTATATACGAGGCT
AAGTCCCAAAG
Found at i:29047078 original size:39 final size:39
Alignment explanation
Indices: 29046960--29047096 Score: 146
Period size: 36 Copynumber: 3.7 Consensus size: 39
29046950 GTGTTATATT
* *
29046960 AGGCTAAGTCCCGAAGGCATTC-TGCT-TGTTATATCCG
1 AGGCTAAGTCCCGAAGGCATTCGTGCTGTGTTTTATACG
* * *
29046997 A-GCTAAGTCCCAAAGGCATTTG-GCTG-G-TTTATACC
1 AGGCTAAGTCCCGAAGGCATTCGTGCTGTGTTTTATACG
*
29047032 CGGCTAAGTCCCGAAGGCATTCGTGCTGTGTTTTATACG
1 AGGCTAAGTCCCGAAGGCATTCGTGCTGTGTTTTATACG
* *
29047071 AGGCTAAGTCTCGACGGC-TT-GTGCTG
1 AGGCTAAGTCCCGAAGGCATTCGTGCTG
29047097 GTATTCATAT
Statistics
Matches: 82, Mismatches: 12, Indels: 12
0.77 0.11 0.11
Matches are distributed among these distances:
35 5 0.06
36 41 0.50
37 11 0.13
38 3 0.04
39 22 0.27
ACGTcount: A:0.20, C:0.23, G:0.27, T:0.29
Consensus pattern (39 bp):
AGGCTAAGTCCCGAAGGCATTCGTGCTGTGTTTTATACG
Found at i:29053633 original size:38 final size:39
Alignment explanation
Indices: 29053591--29053789 Score: 279
Period size: 38 Copynumber: 5.3 Consensus size: 39
29053581 GTGTGAGATA
* *
29053591 TATATCCGGGCTAATTCCCGAAGGCATT-TTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
29053629 TATAT-C-GGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
29053666 TATATCC-GGCTAAGTCCCAAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
29053704 TATA-CCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* * * *
29053742 TATAT-CGGGCTAAGTCTCG-ACGC-TTTGTGCTGGTAT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
29053778 TATATCCGGGCT
1 TATATCCGGGCT
29053790 TAAAGTCCGC
Statistics
Matches: 148, Mismatches: 8, Indels: 11
0.89 0.05 0.07
Matches are distributed among these distances:
36 35 0.24
37 26 0.18
38 87 0.59
ACGTcount: A:0.19, C:0.22, G:0.28, T:0.31
Consensus pattern (39 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
Found at i:29053807 original size:39 final size:36
Alignment explanation
Indices: 29053591--29053815 Score: 156
Period size: 38 Copynumber: 6.0 Consensus size: 36
29053581 GTGTGAGATA
* *
29053591 TATATCCGGGCTAATTCCCGAAGGCATTT-TGCTGGTGT
1 TATATCCGGGCTAAGT-CCG-ACGC-TTTGTGCTGGTGT
* *
29053629 TATAT-C-GGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGT-CCG-ACGC-TTTGTGCTGGTGT
* * *
29053666 TATATCC-GGCTAAGTCCCAAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGT-CC-GACGC-TTTGTGCTGGTGT
* *
29053704 TATA-CCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGT-CCG-ACGC-TTTGTGCTGGTGT
*
29053742 TATAT-CGGGCTAAGTCTCGACGCTTTGTGCTGGTAT
1 TATATCCGGGCTAAGTC-CGACGCTTTGTGCTGGTGT
* *
29053778 TATATCCGGGCTTAAAGTCCGCATGCTTTGTGGTGGTG
1 TATATCCGGGC-T-AAGTCCG-ACGCTTTGTGCTGGTG
29053816 ATTGATTTGG
Statistics
Matches: 166, Mismatches: 10, Indels: 21
0.84 0.05 0.11
Matches are distributed among these distances:
36 35 0.21
37 26 0.16
38 87 0.52
39 18 0.11
ACGTcount: A:0.18, C:0.21, G:0.29, T:0.32
Consensus pattern (36 bp):
TATATCCGGGCTAAGTCCGACGCTTTGTGCTGGTGT
Found at i:29060343 original size:39 final size:39
Alignment explanation
Indices: 29060300--29060505 Score: 297
Period size: 39 Copynumber: 5.3 Consensus size: 39
29060290 GTGTGAGATA
* *
29060300 TATATCCGGGCTAATTCCCGAAGGCATTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* *
29060339 TATATCTGAGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* *
29060378 TATATCCGAGCTAAGTCCCAAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
29060417 TATACCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* * * * *
29060456 TATATCCAGGCTAAGTCTCGACGGC-TTTGTGCTGGTAT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
29060494 TATATCCGGGCT
1 TATATCCGGGCT
29060506 TAAAGTCCTG
Statistics
Matches: 151, Mismatches: 16, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
38 22 0.15
39 129 0.85
ACGTcount: A:0.19, C:0.22, G:0.28, T:0.31
Consensus pattern (39 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
Found at i:29063851 original size:39 final size:39
Alignment explanation
Indices: 29063720--29063849 Score: 188
Period size: 39 Copynumber: 3.3 Consensus size: 39
29063710 GTCTTTAGGC
* *
29063720 CCGGATACATTTCCAGCACGTAGCCTGCGGACCTCAAGT
1 CCGGATATATTTCCAGCACGTAGCCTGTGGACCTCAAGT
* *
29063759 CCGGATATATTTCCAACACGTAGCTTGTGGACCTCAAGT
1 CCGGATATATTTCCAGCACGTAGCCTGTGGACCTCAAGT
* * *
29063798 CCGGATATATTTCTAGCATGTAGCCTGTGAACCTCAAGT
1 CCGGATATATTTCCAGCACGTAGCCTGTGGACCTCAAGT
*
29063837 CCGGATATGTTTC
1 CCGGATATATTTC
29063850 TAAATATCAT
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 81 1.00
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.28
Consensus pattern (39 bp):
CCGGATATATTTCCAGCACGTAGCCTGTGGACCTCAAGT
Found at i:29067331 original size:46 final size:47
Alignment explanation
Indices: 29067210--29067331 Score: 138
Period size: 46 Copynumber: 2.6 Consensus size: 47
29067200 TGTCTTCGAC
* * *
29067210 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGACTCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
* * * *
29067260 ATGGGCTTACATGGCTCATCCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGACTCATTCCTGTCTCCAAAGCCAATATATCTAAT
*
29067306 ATGGACTTACATGACTCATTTCTGTC
1 ATGGACTTACATGACTCATTCCTGTC
29067332 CTGTCCTGTC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
46 32 0.52
50 29 0.48
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.35
Consensus pattern (47 bp):
ATGGACTTACATGACTCATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:29075478 original size:20 final size:20
Alignment explanation
Indices: 29075453--29075499 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
29075443 AACAGGGGTC
29075453 ACACGCCTGTGTGGCTTGGG
1 ACACGCCTGTGTGGCTTGGG
*
29075473 ACACGCTTGTGTGGCTTGGG
1 ACACGCCTGTGTGGCTTGGG
29075493 ACACGCC
1 ACACGCC
29075500 CGTGCGGGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.13, C:0.28, G:0.36, T:0.23
Consensus pattern (20 bp):
ACACGCCTGTGTGGCTTGGG
Found at i:29081689 original size:45 final size:45
Alignment explanation
Indices: 29081639--29081727 Score: 133
Period size: 45 Copynumber: 2.0 Consensus size: 45
29081629 AAAACATGTG
* *
29081639 TCACATATATCACGAACTCAGACCATAACTCAATGAGTTCAGATA
1 TCACATATATCACGAACTCAAACCACAACTCAATGAGTTCAGATA
* * *
29081684 TCACATATATCATGAGCTGAAACCACAACTCAATGAGTTCAGAT
1 TCACATATATCACGAACTCAAACCACAACTCAATGAGTTCAGAT
29081728 TACATAAGTC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.39, C:0.24, G:0.12, T:0.25
Consensus pattern (45 bp):
TCACATATATCACGAACTCAAACCACAACTCAATGAGTTCAGATA
Found at i:29103337 original size:42 final size:42
Alignment explanation
Indices: 29103223--29103350 Score: 102
Period size: 43 Copynumber: 3.0 Consensus size: 42
29103213 ATATGTGTTC
* *
29103223 TCGTGTAAGACCAC-GTCTGGGACATTGGCATCG-ACTTATGATT
1 TCGTGTAAGACC-CTGTCTGGGAAAGTGGCATCGTA-TT-TGATT
* * * * *
29103266 TATGTGTAA-ACCATGTTTAGG-ACGTTGGCATCGTATTTGATT
1 T-CGTGTAAGACCCTGTCTGGGAAAG-TGGCATCGTATTTGATT
*
29103308 TCGTGTAAGACCCTGTCTGGGAAAGTGGCATTGATATTTGATT
1 TCGTGTAAGACCCTGTCTGGGAAAGTGGCATCG-TATTTGATT
29103351 ACATGTAATA
Statistics
Matches: 65, Mismatches: 13, Indels: 14
0.71 0.14 0.15
Matches are distributed among these distances:
41 6 0.09
42 22 0.34
43 30 0.46
44 7 0.11
ACGTcount: A:0.23, C:0.16, G:0.26, T:0.35
Consensus pattern (42 bp):
TCGTGTAAGACCCTGTCTGGGAAAGTGGCATCGTATTTGATT
Found at i:29121753 original size:26 final size:26
Alignment explanation
Indices: 29121724--29121774 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
29121714 GACAGGGTTG
29121724 TATGATTGAGCAGCTGCAGACGACGC
1 TATGATTGAGCAGCTGCAGACGACGC
**
29121750 TATGATTGAGCAGCTGGGGACGACG
1 TATGATTGAGCAGCTGCAGACGACG
29121775 TATTGTCCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.20, G:0.35, T:0.20
Consensus pattern (26 bp):
TATGATTGAGCAGCTGCAGACGACGC
Found at i:29126510 original size:35 final size:35
Alignment explanation
Indices: 29126444--29126511 Score: 102
Period size: 35 Copynumber: 1.9 Consensus size: 35
29126434 ACATATTCAT
*
29126444 GATCAATTCCATATTAATATAGGTCTTATAGGTAA
1 GATCAATTCCATATTAATATAGGTCTCATAGGTAA
*
29126479 GATCAATTCCATATTAATGTA-GTCATCATAGGT
1 GATCAATTCCATATTAATATAGGTC-TCATAGGT
29126512 GCTTTACATT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 3 0.10
35 27 0.90
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37
Consensus pattern (35 bp):
GATCAATTCCATATTAATATAGGTCTCATAGGTAA
Found at i:29129117 original size:47 final size:47
Alignment explanation
Indices: 29129000--29129201 Score: 334
Period size: 47 Copynumber: 4.3 Consensus size: 47
29128990 CCCTTCGGGA
* * * * * *
29129000 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
29129047 C-TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
29129093 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
29129140 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
29129187 CTTATCACATATATA
1 CTTATCACATATATA
29129202 TATACACTTT
Statistics
Matches: 146, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
46 39 0.27
47 107 0.73
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:29139083 original size:5 final size:6
Alignment explanation
Indices: 29139066--29139090 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
29139056 TAAACATGTA
29139066 TATTTT TATTTT TATTTT TATTTT T
1 TATTTT TATTTT TATTTT TATTTT T
29139091 TTAAGAACAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TATTTT
Found at i:29142283 original size:13 final size:13
Alignment explanation
Indices: 29142265--29142308 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
29142255 TCAATCTTAA
*
29142265 GCACGGGTGGTGC
1 GCACGGGCGGTGC
29142278 GCACGGGCGGTGC
1 GCACGGGCGGTGC
29142291 GCACGGGC-GTGTC
1 GCACGGGCGGTG-C
29142304 GCACG
1 GCACG
29142309 CCCGTGCTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
12 3 0.10
13 26 0.90
ACGTcount: A:0.09, C:0.30, G:0.50, T:0.11
Consensus pattern (13 bp):
GCACGGGCGGTGC
Found at i:29145216 original size:79 final size:81
Alignment explanation
Indices: 29145080--29145264 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
29145070 TTGAATGATG
*
29145080 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
29145144 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
29145159 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
29145221 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
29145239 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
29145265 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:29145278 original size:40 final size:40
Alignment explanation
Indices: 29145081--29145264 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
29145071 TGAATGATGT
* * * *
29145081 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
29145121 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
29145161 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
29145199 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
29145240 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
29145265 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:29145286 original size:79 final size:79
Alignment explanation
Indices: 29145081--29145297 Score: 201
Period size: 79 Copynumber: 2.7 Consensus size: 79
29145071 TGAATGATGT
** * * * **
29145081 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
29145144 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
29145161 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
29145226 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
29145240 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
29145298 TACGTGATTT
Statistics
Matches: 116, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 71 0.61
80 42 0.36
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:29153177 original size:79 final size:81
Alignment explanation
Indices: 29153041--29153225 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
29153031 TTGAATGATG
*
29153041 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
29153105 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
29153120 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
29153182 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
29153200 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
29153226 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:29153239 original size:40 final size:40
Alignment explanation
Indices: 29153042--29153225 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
29153032 TGAATGATGT
* * * *
29153042 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
29153082 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
29153122 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
29153160 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
29153201 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
29153226 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:29153247 original size:79 final size:79
Alignment explanation
Indices: 29153042--29153258 Score: 201
Period size: 79 Copynumber: 2.7 Consensus size: 79
29153032 TGAATGATGT
** * * * **
29153042 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
29153105 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
29153122 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
29153187 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
29153201 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
29153259 TACGTGATTT
Statistics
Matches: 116, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 71 0.61
80 42 0.36
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:29167370 original size:20 final size:21
Alignment explanation
Indices: 29167331--29167370 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
29167321 GTTATAATGA
*
29167331 CCACACGGGCGTGTTGCCCTT
1 CCACACCGGCGTGTTGCCCTT
29167352 CCACACCGGCGTG-TGCCCT
1 CCACACCGGCGTGTTGCCCT
29167371 GATTCAAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.10, C:0.42, G:0.28, T:0.20
Consensus pattern (21 bp):
CCACACCGGCGTGTTGCCCTT
Found at i:29184792 original size:44 final size:44
Alignment explanation
Indices: 29184665--29184782 Score: 119
Period size: 46 Copynumber: 2.6 Consensus size: 44
29184655 TGTGAGCTAG
* * * * **
29184665 TGTAAGACATGTCTGGGACATGCATCGGCCTCAAGAAATAAGTCAA
1 TGTAAGACATGTCCGGGACATGCATCAG-CT-ACGAGATGTGTCAA
* *
29184711 TGTAAGACATGTCTGGGACATGCATCAGCTACGAGATGTGTCAG
1 TGTAAGACATGTCCGGGACATGCATCAGCTACGAGATGTGTCAA
*
29184755 TGTAAGACCATTTCCGGGACATGGCATC
1 TGTAAGA-CATGTCCGGGACAT-GCATC
29184783 GGCACAGATG
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
44 16 0.26
45 14 0.23
46 32 0.52
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (44 bp):
TGTAAGACATGTCCGGGACATGCATCAGCTACGAGATGTGTCAA
Found at i:29187004 original size:46 final size:46
Alignment explanation
Indices: 29186954--29187126 Score: 203
Period size: 46 Copynumber: 3.7 Consensus size: 46
29186944 TTGAGCATCT
29186954 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
* * *
29187000 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCC
*
29187047 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
* *
29187092 TGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 -GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
29187127 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 9, Indels: 20
0.79 0.07 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 58 0.54
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
Found at i:29187107 original size:93 final size:93
Alignment explanation
Indices: 29186948--29187119 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
29186938 GGATGATTGA
* *
29186948 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
29187013 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
29187041 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
29187105 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
29187120 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:29190658 original size:44 final size:45
Alignment explanation
Indices: 29190604--29190797 Score: 135
Period size: 46 Copynumber: 4.2 Consensus size: 45
29190594 CTTAGACAAG
* *
29190604 GTCTTACACTGAC-ACATCTCGTA-GCTGATACATGTCCCAGACAT
1 GTCTTACACTGACTACATCTCG-AGGCCGATACATGTCCCAAACAT
* * *
29190648 GTCTTACACTGGCTTACTTCTCGAGGCCGATGCATGTCCCAAACAT
1 GTCTTACACTGAC-TACATCTCGAGGCCGATACATGTCCCAAACAT
* * * * * *
29190694 GTCTTACACTAGCACT-CGTCTCAATGTCGATGCCATGTCCCAGACAT
1 GTCTTACACT-G-ACTACATCTCGAGGCCGAT-ACATGTCCCAAACAT
* * * * * *
29190741 GGTCTTACACTGGCTCTCATAAT-GTGGCCGATGCATGTCCCAGACAT
1 -GTCTTACACTGACT-ACAT-CTCGAGGCCGATACATGTCCCAAACAT
29190788 GTCTTACACT
1 GTCTTACACT
29190798 AGCACACAAA
Statistics
Matches: 120, Mismatches: 20, Indels: 18
0.76 0.13 0.11
Matches are distributed among these distances:
44 12 0.10
45 1 0.01
46 58 0.48
47 30 0.25
48 18 0.15
49 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (45 bp):
GTCTTACACTGACTACATCTCGAGGCCGATACATGTCCCAAACAT
Found at i:29190685 original size:46 final size:46
Alignment explanation
Indices: 29190634--29190797 Score: 174
Period size: 46 Copynumber: 3.5 Consensus size: 46
29190624 GTAGCTGATA
29190634 CATGTCCCAGACATGTCTTACACTGGCTTACTTCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTTACTTCTCGAGGCCGATG
* * * * *
29190680 CATGTCCCAAACATGTCTTACACTAGC--ACTCGTCTCAATGTCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTTACT--TCTCGAGGCCGATG
** *
29190726 CCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCT-TAC-TTCTCGAGGCCGATG
29190774 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
29190798 AGCACACAAA
Statistics
Matches: 97, Mismatches: 13, Indels: 16
0.77 0.10 0.13
Matches are distributed among these distances:
44 3 0.03
46 46 0.47
47 27 0.28
48 18 0.19
49 1 0.01
50 1 0.01
51 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGGCTTACTTCTCGAGGCCGATG
Found at i:29194212 original size:21 final size:21
Alignment explanation
Indices: 29194186--29194229 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
29194176 TAGACACAGC
**
29194186 GGGTGTTGAGTTTTTGAGATT
1 GGGTGTTGAGTTTCGGAGATT
29194207 GGGTGTTGAGTTTCGGAGATT
1 GGGTGTTGAGTTTCGGAGATT
29194228 GG
1 GG
29194230 TTGTAATTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.14, C:0.02, G:0.43, T:0.41
Consensus pattern (21 bp):
GGGTGTTGAGTTTCGGAGATT
Found at i:29198873 original size:21 final size:21
Alignment explanation
Indices: 29198849--29198888 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
29198839 ATATAAAACA
29198849 AAAAAAATATGAAGTTTTTAG
1 AAAAAAATATGAAGTTTTTAG
* *
29198870 AAAAAAATTTTAAGTTTTT
1 AAAAAAATATGAAGTTTTT
29198889 TTGTCTCCCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (21 bp):
AAAAAAATATGAAGTTTTTAG
Found at i:29199609 original size:20 final size:19
Alignment explanation
Indices: 29199570--29199613 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
29199560 TGATTGGATA
*
29199570 GTGTAAGTGAATTTTGAAT
1 GTGTAAGTGAATTCTGAAT
29199589 GGTGTAAGTGAATTCCT-AAT
1 -GTGTAAGTGAATT-CTGAAT
29199609 GTGTA
1 GTGTA
29199614 TCTATATATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 5 0.23
20 16 0.73
21 1 0.05
ACGTcount: A:0.30, C:0.05, G:0.27, T:0.39
Consensus pattern (19 bp):
GTGTAAGTGAATTCTGAAT
Found at i:29203277 original size:39 final size:39
Alignment explanation
Indices: 29203229--29203307 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
29203219 AAAAGAAAGT
*
29203229 AAGAATAACTAGTTATGGGCTCCAACTTATAGTAAGAAA
1 AAGAATAACTAGTTATGGGCTCCAACTAATAGTAAGAAA
29203268 AAGAATAACTAGTTATGGGCTCCAACTAATAGTAAGAAA
1 AAGAATAACTAGTTATGGGCTCCAACTAATAGTAAGAAA
29203307 A
1 A
29203308 TAGATGGATA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.46, C:0.13, G:0.18, T:0.24
Consensus pattern (39 bp):
AAGAATAACTAGTTATGGGCTCCAACTAATAGTAAGAAA
Found at i:29204493 original size:8 final size:8
Alignment explanation
Indices: 29204480--29204504 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
29204470 AATAAAAAAA
29204480 ATTAAATT
1 ATTAAATT
29204488 ATTAAATT
1 ATTAAATT
29204496 ATTAAATT
1 ATTAAATT
29204504 A
1 A
29204505 AAATTAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (8 bp):
ATTAAATT
Found at i:29206997 original size:18 final size:17
Alignment explanation
Indices: 29206971--29207019 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 17
29206961 GTAAGGGTAA
*
29206971 ATTTTATTTTTTAATATT
1 ATTTAATTTTTTAAT-TT
29206989 ATTTAATTTTTATAATTT
1 ATTTAATTTTT-TAATTT
*
29207007 AATTAATATTTTT
1 ATTTAAT-TTTTT
29207020 TATAATAGTC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 19 0.70
19 8 0.30
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
ATTTAATTTTTTAATTT
Found at i:29209026 original size:22 final size:22
Alignment explanation
Indices: 29208986--29209050 Score: 76
Period size: 22 Copynumber: 3.0 Consensus size: 22
29208976 GCTCGATATT
* * *
29208986 TACGGCCTTTAGCCATTCTGTC
1 TACGGCGTTAAGCCGTTCTGTC
* *
29209008 TATGGCGTTGAGCCGTTCTGTC
1 TACGGCGTTAAGCCGTTCTGTC
*
29209030 TACGGCGTTAAGTCGTTCTGT
1 TACGGCGTTAAGCCGTTCTGT
29209051 TGACTTAGTG
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.12, C:0.25, G:0.26, T:0.37
Consensus pattern (22 bp):
TACGGCGTTAAGCCGTTCTGTC
Found at i:29209235 original size:28 final size:27
Alignment explanation
Indices: 29209191--29209255 Score: 94
Period size: 28 Copynumber: 2.4 Consensus size: 27
29209181 GCATCTGATA
*
29209191 CTGATTCTGTATTGGGCTTAGGCCCAC
1 CTGATTCTGTATTGGGCTAAGGCCCAC
*
29209218 CTGATTCTATTATTGGGCTAAGGCCCAC
1 CTGATTCT-GTATTGGGCTAAGGCCCAC
*
29209246 CTGATACTGT
1 CTGATTCTGT
29209256 TTCTACAATG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 9 0.27
28 24 0.73
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (27 bp):
CTGATTCTGTATTGGGCTAAGGCCCAC
Found at i:29211976 original size:33 final size:33
Alignment explanation
Indices: 29211929--29211993 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
29211919 ATATCTGCAT
*
29211929 CTGATACTGATTCTA-TATTGGGCTAAAGCCCAC
1 CTGATACTGATTCTACGA-TGGGCTAAAGCCCAC
* *
29211962 CTGATACTGTTTCTACGATGGGCTCAAGCCCA
1 CTGATACTGATTCTACGATGGGCTAAAGCCCA
29211994 ATCTGTTTCT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 27 0.96
34 1 0.04
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (33 bp):
CTGATACTGATTCTACGATGGGCTAAAGCCCAC
Found at i:29212716 original size:7 final size:7
Alignment explanation
Indices: 29212701--29212731 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
29212691 AACATAGTCG
*
29212701 ATTTCGT
1 ATTTAGT
29212708 ATTTAGT
1 ATTTAGT
29212715 ATTTAGT
1 ATTTAGT
29212722 ATTTAGT
1 ATTTAGT
29212729 ATT
1 ATT
29212732 ATGTATATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.26, C:0.03, G:0.13, T:0.58
Consensus pattern (7 bp):
ATTTAGT
Found at i:29213910 original size:58 final size:58
Alignment explanation
Indices: 29213734--29213912 Score: 223
Period size: 59 Copynumber: 3.1 Consensus size: 58
29213724 ATTGATTTAT
* * * *
29213734 TTTTGAATATTTTTGTTCAAATTATTTGTATATTGTTTCATTTAATAAAGTATAAGTTA
1 TTTTGAATATTTTTGTACAAATTATTT-TATATTGTTTCATTTAATAAAATAGAAGTTC
* * * *
29213793 TTTTGAAAATTTTTGTAAAAATTATTTTTATATTATTTCATTTAATAAAATAGATGTTC
1 TTTTGAATATTTTTGTACAAATTA-TTTTATATTGTTTCATTTAATAAAATAGAAGTTC
* ** * *
29213852 TTTTGAATATTTTTGTACAAATCAAATAATATTGTTTCATTTAATAAATTAGAAGTTC
1 TTTTGAATATTTTTGTACAAATTATTTTATATTGTTTCATTTAATAAAATAGAAGTTC
29213910 TTT
1 TTT
29213913 CAATGTGGAC
Statistics
Matches: 102, Mismatches: 17, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
58 31 0.30
59 68 0.67
60 3 0.03
ACGTcount: A:0.35, C:0.04, G:0.08, T:0.52
Consensus pattern (58 bp):
TTTTGAATATTTTTGTACAAATTATTTTATATTGTTTCATTTAATAAAATAGAAGTTC
Found at i:29228729 original size:30 final size:30
Alignment explanation
Indices: 29228690--29228778 Score: 110
Period size: 29 Copynumber: 3.0 Consensus size: 30
29228680 AAAAAAAATC
*
29228690 CATCTCGTCAAAATAATTTTTTTCAGAACA
1 CATCTCGTCAAAATTATTTTTTTCAGAACA
* *
29228720 CAT-TACGTCAAATTTA-TTTTTTCAGAACC
1 CATCT-CGTCAAAATTATTTTTTTCAGAACA
* *
29228749 CATCTTGTCAAAATTATTTTTTCCAGAACA
1 CATCTCGTCAAAATTATTTTTTTCAGAACA
29228779 ATACTTAGTA
Statistics
Matches: 49, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
29 25 0.51
30 24 0.49
ACGTcount: A:0.34, C:0.20, G:0.07, T:0.39
Consensus pattern (30 bp):
CATCTCGTCAAAATTATTTTTTTCAGAACA
Found at i:29230385 original size:43 final size:43
Alignment explanation
Indices: 29230331--29230438 Score: 126
Period size: 43 Copynumber: 2.5 Consensus size: 43
29230321 GCCCATGTTT
* *
29230331 CCAGACTGTGTACAATTTGAAATAGGGTCACACGGCCATGTCG
1 CCAGACCGTGTACGATTTGAAATAGGGTCACACGGCCATGTCG
** ** * *
29230374 CCAGACCGTGTACGATTCAAAATAGGGTCATGCGGCTATGTGG
1 CCAGACCGTGTACGATTTGAAATAGGGTCACACGGCCATGTCG
* *
29230417 CTAGACCGTCTACGATTTGAAA
1 CCAGACCGTGTACGATTTGAAA
29230439 CAGTGTAACA
Statistics
Matches: 53, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (43 bp):
CCAGACCGTGTACGATTTGAAATAGGGTCACACGGCCATGTCG
Found at i:29234619 original size:45 final size:45
Alignment explanation
Indices: 29234541--29234663 Score: 165
Period size: 45 Copynumber: 2.7 Consensus size: 45
29234531 TGCCATTGTG
* ** ***
29234541 TCTTTCAGTTATGGTCTTACTCACTTCCGTCATAATGCCATAGCA
1 TCTTTCAGCTATGGTCTTACTCGTTTTAATCATAATGCCATAGCA
*
29234586 TCTTTCAGCTATGGTCTTACTCGTTTTAATCATATTGCCATAGCA
1 TCTTTCAGCTATGGTCTTACTCGTTTTAATCATAATGCCATAGCA
* *
29234631 TCTTTCATCTATGGTCTTACTTGTTTTAATCAT
1 TCTTTCAGCTATGGTCTTACTCGTTTTAATCAT
29234664 GTTTATGATA
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 69 1.00
ACGTcount: A:0.21, C:0.23, G:0.12, T:0.44
Consensus pattern (45 bp):
TCTTTCAGCTATGGTCTTACTCGTTTTAATCATAATGCCATAGCA
Found at i:29236582 original size:21 final size:22
Alignment explanation
Indices: 29236536--29236584 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 22
29236526 TGATTTAATT
*
29236536 TAATATATTCTTAATTATTTAA
1 TAATATATTCTTAATTATATAA
29236558 -AATATATT-TATAATT-TATAA
1 TAATATATTCT-TAATTATATAA
29236578 TAATATA
1 TAATATA
29236585 AAATAAATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
20 5 0.21
21 19 0.79
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (22 bp):
TAATATATTCTTAATTATATAA
Found at i:29238646 original size:48 final size:48
Alignment explanation
Indices: 29238587--29238813 Score: 341
Period size: 48 Copynumber: 4.7 Consensus size: 48
29238577 CCGTGGTAAA
* *
29238587 TGTGCCTGTGTAAGACCATGTCTAGGACATGGCATCGGTGATGATATG
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATG
*
29238635 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGTGATGATATG
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATG
* * *
29238683 CGTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATG
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATG
*
29238731 TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATG
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATG
* *
29238779 TGAAT-TCA-TGTAAGACCATGTCGGGGACATGGCAT
1 TG--TGCCAGTGTAAGACCATGTCTGGGACATGGCAT
29238814 TGGTACTTTA
Statistics
Matches: 163, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
48 161 0.99
49 1 0.01
50 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (48 bp):
TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATG
Found at i:29241924 original size:24 final size:24
Alignment explanation
Indices: 29241897--29241994 Score: 153
Period size: 24 Copynumber: 4.0 Consensus size: 24
29241887 AAAGGCTGTC
29241897 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
29241921 GGAG-AGAATTTAGGAGCTGATAAG
1 GGAGAAG-ATTTAGGAGCTGATAAG
* *
29241945 GGAGAGGATTTAGGAGCTGATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
29241969 GGAGAAGATTTAGGAGCTGATCAAG
1 GGAGAAGATTTAGGAGCTGAT-AAG
29241994 G
1 G
29241995 AGCAGGAGTT
Statistics
Matches: 67, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
23 2 0.03
24 61 0.91
25 4 0.06
ACGTcount: A:0.37, C:0.05, G:0.38, T:0.20
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:29243149 original size:31 final size:31
Alignment explanation
Indices: 29243111--29243171 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
29243101 AAATTGGAAT
29243111 AAAGGGCCAACGCGCCCAATTCGGTAAGAAA
1 AAAGGGCCAACGCGCCCAATTCGGTAAGAAA
29243142 AAAGGGCCAACGCGCCCAATTCGGTAAGAA
1 AAAGGGCCAACGCGCCCAATTCGGTAAGAA
29243172 CCCTCGATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.38, C:0.26, G:0.26, T:0.10
Consensus pattern (31 bp):
AAAGGGCCAACGCGCCCAATTCGGTAAGAAA
Found at i:29252321 original size:40 final size:40
Alignment explanation
Indices: 29252266--29252467 Score: 190
Period size: 40 Copynumber: 5.0 Consensus size: 40
29252256 TAAATGCTTT
* * *
29252266 CAGGGATACCAAAGTACAAACAGGGGCACGTATGTGTAAA
1 CAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCAAA
* * * * * *
29252306 TAGAGGTGCCGAAGTACAAGCAGGGGCACATATGTGTAAA
1 CAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCAAA
* ** *
29252346 TAGGGGTACCGAAGTACAAGTAGGAGCACGTATGTGCAAA
1 CAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCAAA
* ** * * * *
29252386 CAGGTGTATTGAAGTACGAATAGGGGCACATATGTCCAAA
1 CAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCAAA
* *
29252426 CAGGGGTACCGAAGTATGAAA-AGGGGCACGTATGTACAAA
1 CAGGGGTACCGAAGTA-CAAACAGGGGCACGTATGTGCAAA
29252466 CA
1 CA
29252468 TTCAATAATT
Statistics
Matches: 132, Mismatches: 29, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
40 130 0.98
41 2 0.02
ACGTcount: A:0.37, C:0.16, G:0.30, T:0.17
Consensus pattern (40 bp):
CAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCAAA
Found at i:29262182 original size:40 final size:40
Alignment explanation
Indices: 29262098--29262281 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
29262088 TTGAATGCTG
* * * *
29262098 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
29262137 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
29262178 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
29262218 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
29262258 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
29262282 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:29262235 original size:80 final size:81
Alignment explanation
Indices: 29262098--29262278 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
29262088 TTGAATGCTG
* * *
29262098 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
29262162 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
29262178 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
29262239 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
29262258 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
29262279 ATTGAATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:29262302 original size:39 final size:38
Alignment explanation
Indices: 29262179--29262328 Score: 131
Period size: 40 Copynumber: 3.8 Consensus size: 38
29262169 GTTATTAATT
* ** * *
29262179 CCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTACTAA-A
** *
29262219 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTACT-AAA
*
29262258 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATAA
1 -CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTA-AA
* *
29262298 CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 CCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
29262329 GAGCTAATCC
Statistics
Matches: 93, Mismatches: 11, Indels: 12
0.80 0.09 0.10
Matches are distributed among these distances:
39 30 0.32
40 63 0.68
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTAAA
Found at i:29270082 original size:40 final size:40
Alignment explanation
Indices: 29269998--29270181 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
29269988 TTGAATGCTG
* * * *
29269998 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
29270037 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
29270078 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
29270118 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
29270158 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
29270182 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:29270135 original size:80 final size:81
Alignment explanation
Indices: 29269998--29270178 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
29269988 TTGAATGCTG
* * *
29269998 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
29270062 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
29270078 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
29270139 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
29270158 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
29270179 ATTGAATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:29270202 original size:39 final size:38
Alignment explanation
Indices: 29270079--29270228 Score: 131
Period size: 40 Copynumber: 3.8 Consensus size: 38
29270069 GTTATTAATT
* ** * *
29270079 CCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTACTAA-A
** *
29270119 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTACT-AAA
*
29270158 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATAA
1 -CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTA-AA
* *
29270198 CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 CCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
29270229 GAGCTATATC
Statistics
Matches: 93, Mismatches: 11, Indels: 12
0.80 0.09 0.10
Matches are distributed among these distances:
39 30 0.32
40 63 0.68
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTAAA
Found at i:29270236 original size:40 final size:39
Alignment explanation
Indices: 29270119--29270241 Score: 97
Period size: 40 Copynumber: 3.1 Consensus size: 39
29270109 GATACTAATT
* ** ** *
29270119 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGT-TTTAAAA
1 CCGGGCTAAGTCCCGAAGGCATT-GAACGAGTGACTATAA
* * *
29270158 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTGAACGAGTGACTATAA
* *
29270198 CCGGGCTATGTCCCGAAGGCACTTGAACGAG-GAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCA-TTGAACGAGTGA-CTATAA
29270238 CCGG
1 CCGG
29270242 TTAAATTCCG
Statistics
Matches: 69, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
39 25 0.36
40 44 0.64
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTGAACGAGTGACTATAA
Found at i:29271743 original size:16 final size:16
Alignment explanation
Indices: 29271722--29271755 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
29271712 ATGTTATAAG
29271722 TTGAGTAAGAATTTAT
1 TTGAGTAAGAATTTAT
29271738 TTGAGTAAGAATTTAT
1 TTGAGTAAGAATTTAT
29271754 TT
1 TT
29271756 ATATATGTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.35, C:0.00, G:0.18, T:0.47
Consensus pattern (16 bp):
TTGAGTAAGAATTTAT
Found at i:29272802 original size:11 final size:11
Alignment explanation
Indices: 29272788--29272821 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
29272778 AAATATATAT
29272788 AAAAATTCT-A
1 AAAAATTCTAA
29272798 AAAAATTCTAA
1 AAAAATTCTAA
29272809 AAAAATTCTAA
1 AAAAATTCTAA
29272820 AA
1 AA
29272822 TATATAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 9 0.39
11 14 0.61
ACGTcount: A:0.65, C:0.09, G:0.00, T:0.26
Consensus pattern (11 bp):
AAAAATTCTAA
Found at i:29272803 original size:10 final size:10
Alignment explanation
Indices: 29272774--29272834 Score: 61
Period size: 10 Copynumber: 5.9 Consensus size: 10
29272764 TTTATATTTT
*
29272774 TAAAAAATATA
1 TAAAAAAT-TC
29272785 TATAAAAATTC
1 TA-AAAAATTC
29272796 TAAAAAATTC
1 TAAAAAATTC
29272806 TAAAAAAATTC
1 T-AAAAAATTC
* *
29272817 TAAAATA-TA
1 TAAAAAATTC
29272826 TAAAAAATT
1 TAAAAAATT
29272835 AAAATTTTCA
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
9 7 0.16
10 15 0.35
11 15 0.35
12 6 0.14
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (10 bp):
TAAAAAATTC
Found at i:29272812 original size:21 final size:22
Alignment explanation
Indices: 29272774--29272832 Score: 79
Period size: 21 Copynumber: 2.8 Consensus size: 22
29272764 TTTATATTTT
*
29272774 TAAAAAATATATATAAAAATTC
1 TAAAAAATATATAAAAAAATTC
*
29272796 TAAAAAAT-TCTAAAAAAATTC
1 TAAAAAATATATAAAAAAATTC
29272817 T--AAAATATATAAAAAA
1 TAAAAAATATATAAAAAA
29272833 TTAAAATTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
19 5 0.15
20 8 0.24
21 12 0.36
22 8 0.24
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.29
Consensus pattern (22 bp):
TAAAAAATATATAAAAAAATTC
Found at i:29274599 original size:63 final size:63
Alignment explanation
Indices: 29274531--29274686 Score: 215
Period size: 63 Copynumber: 2.5 Consensus size: 63
29274521 TTTTAAGCAT
* * *
29274531 AAACAGTGAGTTACATGGCCTGGGCACACGCCCGTGTCCCTGGTCGTATGGA-TTTTATACTAC
1 AAACAGTGAGTTACACGGCCTGGGCACACGCCCGTGCCCCTGGCCGTAT-GATTTTTATACTAC
* ** *
29274594 AAACAGTGAGTTACACGGCCTGGGCACACACCTTTGCCCCTGGCCGTGTGATTTTTATACTAC
1 AAACAGTGAGTTACACGGCCTGGGCACACGCCCGTGCCCCTGGCCGTATGATTTTTATACTAC
* *
29274657 AAACAGTGAGTTACACGACCTAGGCACACG
1 AAACAGTGAGTTACACGGCCTGGGCACACG
29274687 TTCGTGTGAA
Statistics
Matches: 82, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
62 2 0.02
63 80 0.98
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (63 bp):
AAACAGTGAGTTACACGGCCTGGGCACACGCCCGTGCCCCTGGCCGTATGATTTTTATACTAC
Found at i:29275346 original size:27 final size:26
Alignment explanation
Indices: 29275316--29275370 Score: 83
Period size: 27 Copynumber: 2.1 Consensus size: 26
29275306 GATTAATTGC
*
29275316 AAAAGAAGAAAGAAGAAAAAGAAATTA
1 AAAAGAAGAAAGAACAAAAA-AAATTA
*
29275343 AAAAGAAGAAAGAACAACAAAAATTA
1 AAAAGAAGAAAGAACAAAAAAAATTA
29275369 AA
1 AA
29275371 GAATCAAAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 8 0.31
27 18 0.69
ACGTcount: A:0.75, C:0.04, G:0.15, T:0.07
Consensus pattern (26 bp):
AAAAGAAGAAAGAACAAAAAAAATTA
Found at i:29277069 original size:46 final size:46
Alignment explanation
Indices: 29276887--29277087 Score: 169
Period size: 46 Copynumber: 4.3 Consensus size: 46
29276877 ATTTGTTTGT
* * * *
29276887 GAGCTAGTGTAAGACATGTC-AGGGACATGCATCGGCCAC-ATTATGA
1 GAGCCAGTGTAAGACATGTCTA-GGACATGCATCGGCTACGA-GACGA
* * *
29276933 GAGCCAGCGTAAGACCATGTCTAGGACATGGCATCGGC-ATTGAAACGA
1 GAGCCAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCTA-CGAGACGA
* * *
29276981 GAGCTAGTGTAAGACATGTCTAGGACATGTATCAGCCT-CGAGACGTA
1 GAGCCAGTGTAAGACATGTCTAGGACATGCATC-GGCTACGAGACG-A
* * *
29277028 -AGCCAGTGTAAGACATGTTTGGGACATGCATCGGCTACGAGATGA
1 GAGCCAGTGTAAGACATGTCTAGGACATGCATCGGCTACGAGACGA
* *
29277073 TAGTCAGTGTAAGAC
1 GAGCCAGTGTAAGAC
29277088 CGTATCTGGG
Statistics
Matches: 127, Mismatches: 18, Indels: 20
0.77 0.11 0.12
Matches are distributed among these distances:
45 4 0.03
46 68 0.54
47 30 0.24
48 24 0.19
49 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.21
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTAGGACATGCATCGGCTACGAGACGA
Found at i:29278842 original size:41 final size:41
Alignment explanation
Indices: 29278774--29278908 Score: 211
Period size: 41 Copynumber: 3.3 Consensus size: 41
29278764 AAACTGAGCA
29278774 AAAATGCCGCTAAA-A-CAGAGCATTAGCGGCGCTTTTGGT
1 AAAATGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTGGT
* *
29278813 AAAATGCTGCTAAAGACCAGAGCATTAGCGGCGTTTTTGGT
1 AAAATGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTGGT
*
29278854 AAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTGGT
1 AAAATGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTGGT
* *
29278895 AAAACGCCACTAAA
1 AAAATGCCGCTAAA
29278909 AGTTATATAA
Statistics
Matches: 88, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
39 13 0.15
40 1 0.01
41 74 0.84
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.21
Consensus pattern (41 bp):
AAAATGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTGGT
Found at i:29279545 original size:24 final size:24
Alignment explanation
Indices: 29279518--29279566 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
29279508 CATATATTTA
29279518 TTAAAAGTTTATATAAAAATTAAT
1 TTAAAAGTTTATATAAAAATTAAT
29279542 TTAAAAGTTTATATAAAAATTAAT
1 TTAAAAGTTTATATAAAAATTAAT
29279566 T
1 T
29279567 GTTATTTTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (24 bp):
TTAAAAGTTTATATAAAAATTAAT
Found at i:29280057 original size:8 final size:8
Alignment explanation
Indices: 29280012--29280073 Score: 56
Period size: 8 Copynumber: 7.4 Consensus size: 8
29280002 TTTATATGTT
29280012 AATTTAAA
1 AATTTAAA
29280020 AATTATAAA
1 AATT-TAAA
29280029 AATCTTCAAAAA
1 AAT-TT---AAA
29280041 AATTT-AA
1 AATTTAAA
29280048 AATTTAAA
1 AATTTAAA
*
29280056 AA-TAAAA
1 AATTTAAA
29280063 AATTTAAA
1 AATTTAAA
29280071 AAT
1 AAT
29280074 AAAAAATAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 14
0.74 0.03 0.23
Matches are distributed among these distances:
7 13 0.29
8 15 0.33
9 8 0.18
10 1 0.02
11 2 0.04
12 6 0.13
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (8 bp):
AATTTAAA
Found at i:29280058 original size:15 final size:15
Alignment explanation
Indices: 29280038--29280113 Score: 64
Period size: 15 Copynumber: 5.1 Consensus size: 15
29280028 AAATCTTCAA
*
29280038 AAAAATTTAAAATTT
1 AAAAATTAAAAATTT
*
29280053 AAAAATAAAAAATTT
1 AAAAATTAAAAATTT
* *
29280068 AAAAA-TAAAAAATA
1 AAAAATTAAAAATTT
* *
29280082 AAAAATAAAAAACTT
1 AAAAATTAAAAATTT
* * *
29280097 AAATATTTAATATTT
1 AAAAATTAAAAATTT
29280112 AA
1 AA
29280114 TATTTAATAT
Statistics
Matches: 47, Mismatches: 13, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
14 11 0.23
15 36 0.77
ACGTcount: A:0.68, C:0.01, G:0.00, T:0.30
Consensus pattern (15 bp):
AAAAATTAAAAATTT
Found at i:29280062 original size:22 final size:22
Alignment explanation
Indices: 29280037--29280087 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
29280027 AAAATCTTCA
* *
29280037 AAAAAATTTAAAATTTAAAAAT
1 AAAAAATTTAAAAATAAAAAAT
29280059 AAAAAATTTAAAAATAAAAAAT
1 AAAAAATTTAAAAATAAAAAAT
29280081 AAAAAAT
1 AAAAAAT
29280088 AAAAAACTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (22 bp):
AAAAAATTTAAAAATAAAAAAT
Found at i:29280063 original size:14 final size:14
Alignment explanation
Indices: 29280046--29280092 Score: 67
Period size: 14 Copynumber: 3.3 Consensus size: 14
29280036 AAAAAAATTT
29280046 AAAATTTAAAAATAA
1 AAAATTTAAAAAT-A
29280061 AAAATTTAAAAATA
1 AAAATTTAAAAATA
* *
29280075 AAAAATAAAAAATA
1 AAAATTTAAAAATA
29280089 AAAA
1 AAAA
29280093 ACTTAAATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
14 17 0.57
15 13 0.43
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (14 bp):
AAAATTTAAAAATA
Found at i:29280078 original size:7 final size:7
Alignment explanation
Indices: 29280053--29280093 Score: 64
Period size: 7 Copynumber: 5.7 Consensus size: 7
29280043 TTTAAAATTT
29280053 AAAAATA
1 AAAAATA
*
29280060 AAAAATTT
1 AAAAA-TA
29280068 AAAAATA
1 AAAAATA
29280075 AAAAATA
1 AAAAATA
29280082 AAAAATA
1 AAAAATA
29280089 AAAAA
1 AAAAA
29280094 CTTAAATATT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
7 25 0.81
8 6 0.19
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (7 bp):
AAAAATA
Found at i:29280108 original size:7 final size:7
Alignment explanation
Indices: 29280098--29280125 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
29280088 AAAAAACTTA
29280098 AATATTT
1 AATATTT
29280105 AATATTT
1 AATATTT
29280112 AATATTT
1 AATATTT
29280119 AATATTT
1 AATATTT
29280126 TAATCCATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
AATATTT
Done.