Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 91 of 343
Found at i:30227565 original size:10 final size:9
Alignment explanation
Indices: 30227493--30227547 Score: 58
Period size: 10 Copynumber: 5.8 Consensus size: 9
30227483 AGGCAACCCA
*
30227493 ATTTATATT
1 ATTTATTTT
30227502 -TTTATTTT
1 ATTTATTTT
30227510 ATTTTATTTT
1 A-TTTATTTT
30227520 ATTTTATTTTT
1 A-TTTA-TTTT
30227531 ATTTATTTT
1 ATTTATTTT
30227540 ATCTTATT
1 AT-TTATT
30227548 ATTTTATTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
8 7 0.17
9 6 0.15
10 23 0.56
11 5 0.12
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (9 bp):
ATTTATTTT
Found at i:30227576 original size:28 final size:28
Alignment explanation
Indices: 30227493--30227567 Score: 86
Period size: 28 Copynumber: 2.7 Consensus size: 28
30227483 AGGCAACCCA
30227493 ATTTATATTTTTATTTTATTTTAT--T-TT
1 ATTT-TATTTTTA-TTTATTTTATCATATT
*
30227520 ATTTTATTTTTATTTATTTTATCTTATT
1 ATTTTATTTTTATTTATTTTATCATATT
30227548 ATTTTATTATTTA-TTATTTT
1 ATTTTATT-TTTATTTATTTT
30227568 CAGATATTAA
Statistics
Matches: 44, Mismatches: 0, Indels: 7
0.86 0.00 0.14
Matches are distributed among these distances:
25 10 0.23
26 8 0.18
27 5 0.11
28 17 0.39
29 4 0.09
ACGTcount: A:0.23, C:0.01, G:0.00, T:0.76
Consensus pattern (28 bp):
ATTTTATTTTTATTTATTTTATCATATT
Found at i:30228565 original size:11 final size:11
Alignment explanation
Indices: 30228551--30228576 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
30228541 AAAATTCTAT
30228551 AAAAAAAGAAA
1 AAAAAAAGAAA
30228562 AAAAAAAGAAA
1 AAAAAAAGAAA
30228573 AAAA
1 AAAA
30228577 GTCATATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAAAGAAA
Found at i:30231640 original size:24 final size:24
Alignment explanation
Indices: 30231591--30231640 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
30231581 TTGTGCTATA
* *
30231591 TTATGTTGCATGTTTTGGAATGGC
1 TTATGTGGCATGTTTTGGAATAGC
30231615 TTATGTGGCATGTTTTGTG-ATAGC
1 TTATGTGGCATGTTTTG-GAATAGC
30231639 TT
1 TT
30231641 GAATATGATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 22 0.96
25 1 0.04
ACGTcount: A:0.16, C:0.08, G:0.28, T:0.48
Consensus pattern (24 bp):
TTATGTGGCATGTTTTGGAATAGC
Found at i:30238362 original size:19 final size:19
Alignment explanation
Indices: 30238338--30238375 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
30238328 ATTTAATATT
30238338 TGTAAAAGATAATTTTTCA
1 TGTAAAAGATAATTTTTCA
30238357 TGTAAAAGATAATTTTTCA
1 TGTAAAAGATAATTTTTCA
30238376 CTTTGAGTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.05, G:0.11, T:0.42
Consensus pattern (19 bp):
TGTAAAAGATAATTTTTCA
Found at i:30238393 original size:22 final size:24
Alignment explanation
Indices: 30238365--30238419 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
30238355 CATGTAAAAG
30238365 ATAATTTTTCA-CTT-TGAGTAGC
1 ATAATTTTTCATCTTATGAGTAGC
*
30238387 ATAA-TTTTCATTTTTATGAGTAGC
1 ATAATTTTTCA-TCTTATGAGTAGC
30238411 ATAATTTTT
1 ATAATTTTT
30238420 GTTTTTAATC
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
21 6 0.21
22 4 0.14
23 2 0.07
24 12 0.43
25 4 0.14
ACGTcount: A:0.29, C:0.09, G:0.11, T:0.51
Consensus pattern (24 bp):
ATAATTTTTCATCTTATGAGTAGC
Found at i:30239774 original size:20 final size:20
Alignment explanation
Indices: 30239749--30239794 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
30239739 ATTTAACTAA
30239749 TTAACTACT-AGCTAACAACC
1 TTAACTACTGA-CTAACAACC
* *
30239769 TTAACTGCTGACTATCAACC
1 TTAACTACTGACTAACAACC
30239789 TTAACT
1 TTAACT
30239795 GTTATTCTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 22 0.96
21 1 0.04
ACGTcount: A:0.35, C:0.28, G:0.07, T:0.30
Consensus pattern (20 bp):
TTAACTACTGACTAACAACC
Found at i:30241923 original size:30 final size:30
Alignment explanation
Indices: 30241889--30241948 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
30241879 ATTTAATACG
30241889 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
30241919 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
30241949 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:30249390 original size:47 final size:47
Alignment explanation
Indices: 30249258--30249523 Score: 424
Period size: 47 Copynumber: 5.6 Consensus size: 47
30249248 TATTTGAATA
30249258 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
30249307 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
30249356 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
30249403 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
30249450 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
30249497 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
30249524 TCCCGAAGGG
Statistics
Matches: 207, Mismatches: 10, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
47 146 0.71
49 61 0.29
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:30251292 original size:37 final size:37
Alignment explanation
Indices: 30251234--30251308 Score: 114
Period size: 37 Copynumber: 2.0 Consensus size: 37
30251224 TGGGAAAAAT
* * *
30251234 TTGGTGACCCGATTTCGTATGTTTATGGATGTTTAAG
1 TTGGTGACCCAATTTCATATGTTTATGAATGTTTAAG
*
30251271 TTGGTGACCCAATTTTATATGTTTATGAATGTTTAAG
1 TTGGTGACCCAATTTCATATGTTTATGAATGTTTAAG
30251308 T
1 T
30251309 CCGGTAACGC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.23, C:0.09, G:0.23, T:0.45
Consensus pattern (37 bp):
TTGGTGACCCAATTTCATATGTTTATGAATGTTTAAG
Found at i:30254574 original size:15 final size:15
Alignment explanation
Indices: 30254554--30254582 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
30254544 TATCAACCTT
30254554 AACTATTATTCTAAA
1 AACTATTATTCTAAA
30254569 AACTATTATTCTAA
1 AACTATTATTCTAA
30254583 CATCGAGTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.45, C:0.14, G:0.00, T:0.41
Consensus pattern (15 bp):
AACTATTATTCTAAA
Found at i:30258925 original size:74 final size:77
Alignment explanation
Indices: 30258843--30259017 Score: 207
Period size: 80 Copynumber: 2.3 Consensus size: 77
30258833 TTTGAAAAAT
30258843 GTATCGATACTATGG-AAAGG-GT-ATTAAT-ACA-TTTGTTTTTTACTAAATTTTTTCAAACAT
1 GTATCGATACTA-GGCAAAGGTGTCA-TAATCACACTTTGTTTTTTACTAAATTTTTTCAAACAT
* * *
30258903 CGAAGCTTAAATTG
64 CAAAGCTCAAATTA
* * *
30258917 GTATCGATACCAGGCAAAGGTGTCGATAATCGACACCTTTTTTTTTTGCTAAATTTTTTCAAACA
1 GTATCGATACTAGGCAAAGGTGTC-ATAATC-ACA-CTTTGTTTTTTACTAAATTTTTTCAAACA
30258982 TCAAAGCTCAAATTA
63 TCAAAGCTCAAATTA
*
30258997 GTATCGATACTGGGCAAAGGT
1 GTATCGATACTAGGCAAAGGT
30259018 ATTGATACTT
Statistics
Matches: 85, Mismatches: 8, Indels: 10
0.83 0.08 0.10
Matches are distributed among these distances:
73 2 0.02
74 16 0.19
75 2 0.02
76 4 0.05
77 1 0.01
78 3 0.04
80 57 0.67
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.36
Consensus pattern (77 bp):
GTATCGATACTAGGCAAAGGTGTCATAATCACACTTTGTTTTTTACTAAATTTTTTCAAACATCA
AAGCTCAAATTA
Found at i:30270406 original size:19 final size:20
Alignment explanation
Indices: 30270382--30270438 Score: 73
Period size: 19 Copynumber: 3.0 Consensus size: 20
30270372 TAATGGTGTT
30270382 TGATTAGTGGAATTATGT-C
1 TGATTAGTGGAATTATGTGC
* *
30270401 TGATTAGTGGAACTAGGTGC
1 TGATTAGTGGAATTATGTGC
*
30270421 -GATTAGTGGAATCATGTG
1 TGATTAGTGGAATTATGTG
30270439 TGCATATAAG
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
19 31 0.97
20 1 0.03
ACGTcount: A:0.26, C:0.07, G:0.32, T:0.35
Consensus pattern (20 bp):
TGATTAGTGGAATTATGTGC
Found at i:30272677 original size:93 final size:93
Alignment explanation
Indices: 30272565--30272736 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
30272555 GCCCGTAAGT
* *
30272565 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTTGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTC-GGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
30272629 ACGAGCTCGGATGCCTAGTTACATCTCTC
65 ACGAGCTCGGATGCCTAGTTACATCTCTC
*
30272658 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
30272723 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
30272737 CAAATATCCC
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:30272732 original size:46 final size:46
Alignment explanation
Indices: 30272560--30272732 Score: 206
Period size: 46 Copynumber: 3.7 Consensus size: 46
30272550 AACCCGCCCG
*
30272560 TAAGTGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTC-GGACGCTCGCATCCA
* * * * *
30272606 TAAGTGAACTTGGACTCAACTCAACGAGCTCGGATGCCTAG-TTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACG-CTCGCATCCA
*** *
30272652 TCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCA
1 TAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCA
*
30272699 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
30272733 TGCCCAAATA
Statistics
Matches: 105, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
45 2 0.02
46 68 0.65
47 35 0.33
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCA
Found at i:30272751 original size:46 final size:45
Alignment explanation
Indices: 30272608--30272751 Score: 123
Period size: 46 Copynumber: 3.1 Consensus size: 45
30272598 CGCATCCATA
* * * *
30272608 AGTGAACTTGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATCCC
* * * *
30272656 --TCGAACTCGGACTCAACTCAACGAGTTCGGACGCTC-GCATCCATA
1 AGT-GAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--C
*
30272701 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCCC
30272747 AGTGA
1 AGTGA
30272752 CATGTCACTT
Statistics
Matches: 76, Mismatches: 13, Indels: 16
0.72 0.12 0.15
Matches are distributed among these distances:
43 4 0.05
46 38 0.50
47 30 0.39
48 4 0.05
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCCC
Found at i:30274930 original size:266 final size:266
Alignment explanation
Indices: 30274452--30274932 Score: 829
Period size: 266 Copynumber: 1.8 Consensus size: 266
30274442 TTGACGTTAA
* * * *
30274452 ATGATGATATGAAAGGATTGATGAGTTAAATGATATACTTATATATGAGAAATCTATTTATTTTA
1 ATGATGATATAAAAGGATTGACGAGTTAAATGATATACTTATATATCAGAAATCCATTTATTTTA
* *
30274517 TGGATGAATTTACCTATATCATGGATAAATACACTAACTCGTGAATTGATAATGTTGTTTAGGCT
66 TGGATGAATTTACCTATATCATGGATAAATACACTAAATCGTGAATTGATAATATTGTTTAGGCT
* *
30274582 TATGTTAAGTATTTGAAATGGAATAGAAAGTAAGTAAATGAAATGGTTCCTAATCTTATGAAAAG
131 TATGTTAAGTATTTGAAATGGAATAGAAAGTAAGTAAATGAAATGGTTCATAATCTTACGAAAAG
*
30274647 GTTGATGATTGCGTAATATGAAACGGGTAAAAAAGGGGAGTGAAACGGTAAGTTCATAATTAGGA
196 GTTGATGATTACGTAATATGAAACGGGTAAAAAAGGGGAGTGAAACGGTAAGTTCATAATTAGGA
30274712 TGTAAT
261 TGTAAT
* *
30274718 ATGATGATATAAAAGGATTGACGAGTTAAATGATGTACTTATATGTCAGAAATCCATTTATTTTA
1 ATGATGATATAAAAGGATTGACGAGTTAAATGATATACTTATATATCAGAAATCCATTTATTTTA
*
30274783 TGGATGAATTTACCTATATCATGGATAAATGCACTAAATCGTGAATTGATAATATTGTTTAGGCT
66 TGGATGAATTTACCTATATCATGGATAAATACACTAAATCGTGAATTGATAATATTGTTTAGGCT
*
30274848 TATGTTAAGTATTTGAAATGGAATGGAAAGTAAGTAAAT-AGAATGGTTCATAATCTTACGAAAA
131 TATGTTAAGTATTTGAAATGGAATAGAAAGTAAGTAAATGA-AATGGTTCATAATCTTACGAAAA
30274912 GGTTGATGATTACGTAATATG
195 GGTTGATGATTACGTAATATG
30274933 TCTTATAAAA
Statistics
Matches: 201, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
265 1 0.00
266 200 1.00
ACGTcount: A:0.38, C:0.07, G:0.21, T:0.35
Consensus pattern (266 bp):
ATGATGATATAAAAGGATTGACGAGTTAAATGATATACTTATATATCAGAAATCCATTTATTTTA
TGGATGAATTTACCTATATCATGGATAAATACACTAAATCGTGAATTGATAATATTGTTTAGGCT
TATGTTAAGTATTTGAAATGGAATAGAAAGTAAGTAAATGAAATGGTTCATAATCTTACGAAAAG
GTTGATGATTACGTAATATGAAACGGGTAAAAAAGGGGAGTGAAACGGTAAGTTCATAATTAGGA
TGTAAT
Found at i:30285151 original size:27 final size:27
Alignment explanation
Indices: 30285113--30285166 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
30285103 ACCATAGATG
*
30285113 TCACATCTAATTCTGGAATCATGCCTT
1 TCACAACTAATTCTGGAATCATGCCTT
*
30285140 TCACAACTAATTTTGGAATCATGCCTT
1 TCACAACTAATTCTGGAATCATGCCTT
30285167 ACCCTCCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.28, C:0.24, G:0.11, T:0.37
Consensus pattern (27 bp):
TCACAACTAATTCTGGAATCATGCCTT
Found at i:30289789 original size:42 final size:42
Alignment explanation
Indices: 30289743--30289938 Score: 167
Period size: 42 Copynumber: 4.5 Consensus size: 42
30289733 TGTCTTAGAC
* ** *
30289743 ATGGTCTTACATGGTATCTCACATCGATGCCATATCCCAGAT
1 ATGGTCTTACACGAAATCTCATATCGATGCCATATCCCAGAT
* * * *
30289785 ATGGTCTTATACGAAATCTCATTTCGATGCCATGTCCCAGAC
1 ATGGTCTTACACGAAATCTCATATCGATGCCATATCCCAGAT
* ** *
30289827 GTGGTCTTACACGAAATCTCATATTAATGCCATATCCTAGAT
1 ATGGTCTTACACGAAATCTCATATCGATGCCATATCCCAGAT
* * ** *
30289869 ATGGTCTTACAAGATGACACATACTGATGCCGACGCCATATCCCAGAT
1 ATGGTCTTAC---ACGA-A-AT-CTCATATCGATGCCATATCCCAGAT
**
30289917 ATGGTCTTACACGGGATCTCAT
1 ATGGTCTTACACGAAATCTCAT
30289939 CAACCCAAAT
Statistics
Matches: 119, Mismatches: 29, Indels: 12
0.74 0.18 0.08
Matches are distributed among these distances:
42 81 0.68
43 2 0.02
45 5 0.04
46 1 0.01
47 2 0.02
48 28 0.24
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (42 bp):
ATGGTCTTACACGAAATCTCATATCGATGCCATATCCCAGAT
Found at i:30292744 original size:33 final size:33
Alignment explanation
Indices: 30292702--30292768 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
30292692 ACCCAGATGA
30292702 TAGTCAATTACCAACTCATAATCTTTTATCAAC
1 TAGTCAATTACCAACTCATAATCTTTTATCAAC
30292735 TAGTCAATTACCAACTCATAATCTTTTATCAAC
1 TAGTCAATTACCAACTCATAATCTTTTATCAAC
30292768 T
1 T
30292769 CTAGCCACCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.36, C:0.24, G:0.03, T:0.37
Consensus pattern (33 bp):
TAGTCAATTACCAACTCATAATCTTTTATCAAC
Found at i:30292769 original size:18 final size:18
Alignment explanation
Indices: 30292713--30292769 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
30292703 AGTCAATTAC
30292713 CAACTCATAATCTTTTAT
1 CAACTCATAATCTTTTAT
* ** *
30292731 CAA--C-TAGTCAATTAC
1 CAACTCATAATCTTTTAT
30292746 CAACTCATAATCTTTTAT
1 CAACTCATAATCTTTTAT
30292764 CAACTC
1 CAACTC
30292770 TAGCCACCTC
Statistics
Matches: 28, Mismatches: 8, Indels: 6
0.67 0.19 0.14
Matches are distributed among these distances:
15 10 0.36
16 1 0.04
17 1 0.04
18 16 0.57
ACGTcount: A:0.35, C:0.26, G:0.02, T:0.37
Consensus pattern (18 bp):
CAACTCATAATCTTTTAT
Found at i:30295424 original size:18 final size:18
Alignment explanation
Indices: 30295401--30295437 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
30295391 AAGTTAAATT
30295401 ACATGGGTAATAATCCTC
1 ACATGGGTAATAATCCTC
30295419 ACATGGGTAATAATCCTC
1 ACATGGGTAATAATCCTC
30295437 A
1 A
30295438 ATCTCAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (18 bp):
ACATGGGTAATAATCCTC
Found at i:30306016 original size:39 final size:39
Alignment explanation
Indices: 30305983--30306069 Score: 138
Period size: 39 Copynumber: 2.2 Consensus size: 39
30305973 CCGGCAATTA
*
30305983 GCCTGCTAGGTATAAACTTGAACTTATCACCGGCACGAG
1 GCCTGCTAGGTATAAACCTGAACTTATCACCGGCACGAG
* **
30306022 GCCTGCTAGGTATAAACCTGAATTTATCACTAGCACGAG
1 GCCTGCTAGGTATAAACCTGAACTTATCACCGGCACGAG
30306061 GCCTGCTAG
1 GCCTGCTAG
30306070 ACATTAAGTC
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.24
Consensus pattern (39 bp):
GCCTGCTAGGTATAAACCTGAACTTATCACCGGCACGAG
Found at i:30309319 original size:49 final size:50
Alignment explanation
Indices: 30309242--30309473 Score: 263
Period size: 49 Copynumber: 4.7 Consensus size: 50
30309232 TACTAAGTGC
* * * *
30309242 AGTACTAAGTTCAGGCTACTACGTGTACCGGATTATT-GGTCGCATGTGT
1 AGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACATGTGT
* * * * * * *
30309291 AGTACTAAGTGTAGGCTACTATGCGTACCCGATAACTTCGATCACGTGTGT
1 AGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TTAGGTCACATGTGT
* ** *
30309342 AGTACTAAGTGCA-GCTACTACGTGTATCAGATGGTTAGGTCACGTGTGT
1 AGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACATGTGT
*
30309391 AGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCGCATGTGT
1 AGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACATGTGT
* * *
30309440 AGTACTAAGTGCAGACTACTATGCGTACCAGATA
1 AGTACTAAGTGCAGGCTACTACGTGTACCAGATA
30309474 GCTTTGGCTA
Statistics
Matches: 154, Mismatches: 26, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
49 96 0.62
50 37 0.24
51 21 0.14
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.29
Consensus pattern (50 bp):
AGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACATGTGT
Found at i:30309419 original size:100 final size:97
Alignment explanation
Indices: 30309242--30309472 Score: 273
Period size: 100 Copynumber: 2.3 Consensus size: 97
30309232 TACTAAGTGC
* * * * *
30309242 AGTACTAAGTTCAGGCTACTACGTGTACCGGATTATTGGTCGCATGTGTAGTACTAAGTGTAGGC
1 AGTACTAAGTGCA-GCTACTACGTGTACCAGATGATTGGTCACATGTGTAGTACTAAGTGCAGGC
* * *
30309307 TACTATGCGTACCCGATAACTTCGATCACGTGTGT
65 TACTACGCGTACCAGATAA-TT-GATCACATGTGT
* * *
30309342 AGTACTAAGTGCAGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGCAGGC
1 AGTACTAAGTGCAGCTACTACGTGTACCAGATGATT-GGTCACATGTGTAGTACTAAGTGCAGGC
* * *
30309407 TACTACGTGTACCAGATAATTGGTCGCATGTGT
65 TACTACGCGTACCAGATAATTGATCACATGTGT
* *
30309440 AGTACTAAGTGCAGACTACTATGCGTACCAGAT
1 AGTACTAAGTGCAG-CTACTACGTGTACCAGAT
30309473 AGCTTTGGCT
Statistics
Matches: 112, Mismatches: 17, Indels: 5
0.84 0.13 0.04
Matches are distributed among these distances:
98 23 0.21
99 36 0.32
100 53 0.47
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (97 bp):
AGTACTAAGTGCAGCTACTACGTGTACCAGATGATTGGTCACATGTGTAGTACTAAGTGCAGGCT
ACTACGCGTACCAGATAATTGATCACATGTGT
Found at i:30312537 original size:39 final size:40
Alignment explanation
Indices: 30312492--30312602 Score: 98
Period size: 40 Copynumber: 2.8 Consensus size: 40
30312482 CGGGGTTTAG
* * *
30312492 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
30312531 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * *
30312571 CCGGATATAGTCGCTAGCACAAATGCCTTCGG
1 CCGGATATAACCACTAGCATAAAGGCCTTCGG
30312603 ATCTTAGTCC
Statistics
Matches: 60, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
39 15 0.25
40 45 0.75
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:30312562 original size:40 final size:41
Alignment explanation
Indices: 30312515--30312700 Score: 223
Period size: 41 Copynumber: 4.6 Consensus size: 41
30312505 CTCGCACAAG
* * * * *
30312515 GCCTTCGGGTCTTAACCCGGATATGGTCAC-TAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGCTTAGCACAAAA
* *
30312555 GCCTTCGGGACTTAGCCCGGATATAGTCGC-TAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGCTTAGCACAAAA
* * *
30312595 GCCTTCGGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGCTTAGCACAAAA
* * * *
30312636 GCCTTCGGATCTTAGTCCGGATGTAGTCGCTTACCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGCTTAGCACAAAA
*
30312677 GCCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
30312701 CATTCGAGTA
Statistics
Matches: 130, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
40 61 0.47
41 69 0.53
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (41 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCGCTTAGCACAAAA
Found at i:30312656 original size:81 final size:82
Alignment explanation
Indices: 30312515--30312698 Score: 205
Period size: 81 Copynumber: 2.3 Consensus size: 82
30312505 CTCGCACAAG
* * * * * *
30312515 GCCTTCGG-GTCTTAACCCGGATATGGTCAC-TAGCATAAATGCCTTCGGGACTTAGCCCGGATA
1 GCCTTCGGAG-CTTAGCCCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGCCCGGATA
* *
30312578 TAGTCGC-TAGCACAAAT
65 TAGTCGCTTACCACAAAA
* * * *
30312595 GCCTTCGGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAAGCCTTC-GGATCTTAGTCCGGATG
1 GCCTTCGGAGCTTAGCCCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGA-CTTAGCCCGGATA
30312659 TAGTCGCTTACCACAAAA
65 TAGTCGCTTACCACAAAA
*
30312677 GCCTTCGGGGCTTAGCCCGGAT
1 GCCTTCGGAGCTTAGCCCGGAT
30312699 ATCATTCGAG
Statistics
Matches: 85, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
80 26 0.31
81 32 0.38
82 27 0.32
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.26
Consensus pattern (82 bp):
GCCTTCGGAGCTTAGCCCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT
AGTCGCTTACCACAAAA
Found at i:30313929 original size:38 final size:38
Alignment explanation
Indices: 30313887--30313962 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
30313877 CAAGAACTCC
30313887 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
30313925 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
30313963 AAAGGATGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.32
Consensus pattern (38 bp):
TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
Found at i:30320624 original size:39 final size:40
Alignment explanation
Indices: 30320579--30320666 Score: 97
Period size: 40 Copynumber: 2.2 Consensus size: 40
30320569 CGGGGTTTAG
* * *
30320579 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
30320618 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
30320658 CCGGATATA
1 CCGGATATA
30320667 GTCGCTGCAG
Statistics
Matches: 39, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
39 15 0.38
40 24 0.62
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:30329753 original size:46 final size:46
Alignment explanation
Indices: 30329703--30329875 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 46
30329693 TGGTTGAGCA
* *
30329703 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
30329749 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
30329796 TCCGAACTCGTTGAGTTGAGTCCTAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
30329842 CCCGAGCTCATTAAGTTGAGTTCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
30329876 GGGGCGGGTT
Statistics
Matches: 102, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 57 0.56
47 28 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:30329859 original size:93 final size:93
Alignment explanation
Indices: 30329700--30329870 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
30329690 GGATGGTTGA
* * * *
30329700 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGCCCGAACTCATTAAGT
30329765 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
30329793 GCATCCGAACTCGTTGAGTTGAGTCCTAGTTCACTTATGGATGCGAACGCCCGAGCTCATTAAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGCCCGAACTCATTAAGT
*
30329858 TGAGTTCGAGTTC
66 TGAGTCCGAGTTC
30329871 ACTTAGGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGCCCGAACTCATTAAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:30331508 original size:48 final size:48
Alignment explanation
Indices: 30331469--30331657 Score: 279
Period size: 48 Copynumber: 3.9 Consensus size: 48
30331459 TACATAAATC
* ** *
30331469 CACATATCATTACCGATGCCATGTCTTAGACATGGTCTTACACTGGCG
1 CACATATCATCACCGATGCCATGTCCCAGACATGGTCTTACACTGGCA
* * * *
30331517 CACATATCATCACTGTTGCCATGTCCCAAACATGGTCTTATACTGGCA
1 CACATATCATCACCGATGCCATGTCCCAGACATGGTCTTACACTGGCA
30331565 CACATATCATCACCGATGCCATGTCCCAGACATGGTCTTACACTGGCA
1 CACATATCATCACCGATGCCATGTCCCAGACATGGTCTTACACTGGCA
** *
30331613 CACATATCATTGCCGATGCCATGTCCTAGACATGGTCTTACACTG
1 CACATATCATCACCGATGCCATGTCCCAGACATGGTCTTACACTG
30331658 AATCTCATTT
Statistics
Matches: 126, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 126 1.00
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.28
Consensus pattern (48 bp):
CACATATCATCACCGATGCCATGTCCCAGACATGGTCTTACACTGGCA
Found at i:30333669 original size:27 final size:28
Alignment explanation
Indices: 30333634--30333686 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
30333624 TTATTTAGAA
* *
30333634 ATCAGTGTTAA-CTGGGCCTTAGCCCAT
1 ATCAATGTTAATCTGGGCCATAGCCCAT
*
30333661 ATCAATGTTAATTTGGGCCATAGCCC
1 ATCAATGTTAATCTGGGCCATAGCCC
30333687 CTTACAGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 10 0.45
28 12 0.55
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (28 bp):
ATCAATGTTAATCTGGGCCATAGCCCAT
Found at i:30338202 original size:41 final size:41
Alignment explanation
Indices: 30338140--30338289 Score: 194
Period size: 41 Copynumber: 3.7 Consensus size: 41
30338130 TCGGGGTTTA
*
30338140 AATCTGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* *
30338181 AATCCGAGCTTGGTCTCGAAGGGATTTTAAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * * *
30338222 AA-CCGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
30338262 AATCCGAGCTTGGTCTCGAAGGGCTTTT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTT
30338290 TGAGTAGCAC
Statistics
Matches: 89, Mismatches: 19, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
40 30 0.34
41 59 0.66
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
Found at i:30341121 original size:28 final size:27
Alignment explanation
Indices: 30341020--30341121 Score: 71
Period size: 28 Copynumber: 3.5 Consensus size: 27
30341010 TCAGTGTTAA
* * *
30341020 CTGGGCCTTAGCCCATATCAATGTTAAT
1 CTGGGCC-TAGCCCATATCAGTATCAAT
*
30341048 CTGGGCCATAGCTCCTTA-CAGTATCAGAGTAT
1 CTGGGCC-TAGC-CCATATCAGTATC--A--AT
*
30341080 ATTGGGCCTAGCCCATATCAGTATCAAT
1 -CTGGGCCTAGCCCATATCAGTATCAAT
30341108 CTGGGCCGTAGCCC
1 CTGGGCC-TAGCCC
30341122 TATTACAAGT
Statistics
Matches: 58, Mismatches: 8, Indels: 16
0.71 0.10 0.20
Matches are distributed among these distances:
27 6 0.10
28 23 0.40
29 4 0.07
30 2 0.03
31 4 0.07
32 13 0.22
33 6 0.10
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (27 bp):
CTGGGCCTAGCCCATATCAGTATCAAT
Found at i:30341141 original size:60 final size:59
Alignment explanation
Indices: 30341021--30341157 Score: 145
Period size: 60 Copynumber: 2.3 Consensus size: 59
30341011 CAGTGTTAAC
* *
30341021 TGGGCCTTAGCCCATATCAATGTTAATCTGGGCCATAGCTCCTTACAGTATCAGAGTATAT
1 TGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCTCCTTACAG-ATCAGAGTATAT
* *
30341082 TGGGCCTAGCCCATATCAGTATCAATCTGGGCCGTAGC-CCTATTACA-AGTC-GAGATATAT
1 TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCTCC--TTACAGA-TCAGAG-TATAT
* *
30341142 TGGGCCTTGGCCATAT
1 TGGGCCTAGCCCATAT
30341158 TATCACAGTT
Statistics
Matches: 66, Mismatches: 6, Indels: 9
0.81 0.07 0.11
Matches are distributed among these distances:
59 6 0.09
60 49 0.74
61 11 0.17
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (59 bp):
TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCTCCTTACAGATCAGAGTATAT
Found at i:30341204 original size:19 final size:20
Alignment explanation
Indices: 30341162--30341205 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
30341152 CCATATTATC
** *
30341162 ACAGTTGGGCCCATTTCAAT
1 ACAGTTGGGCCCATAACAAA
30341182 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCATAACAAA
30341201 ACAGT
1 ACAGT
30341206 CTCATATGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (20 bp):
ACAGTTGGGCCCATAACAAA
Found at i:30347145 original size:54 final size:54
Alignment explanation
Indices: 30347007--30347257 Score: 179
Period size: 54 Copynumber: 4.6 Consensus size: 54
30346997 TTAGTTTACC
* * **
30347007 AAATTACCAAAATACCCCTGGTTTGTAAAATTA-CAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTATAAAATTACCGAAATACCCTC-AATTTGTA
* * * *
30347060 AAATTATCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTA
1 AAATTACCAAAATACCCCTGGTTTATAAAATTACCGAAATACCCTCAATTTGTA
* * ** * * *
30347114 AAATTACCAAAATACCCCTGATTTACAAAATTATAGAAA-ACCCTTGACTTTCTAA
1 AAATTACCAAAATACCCCTGGTTTATAAAATTACCGAAATACCC-TCAATTTGT-A
* ** * * * *
30347169 AAATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAATGCCCTCGATTTGTA
1 AAATTACCA-AAATACCCCTGGTTTATAAAATTACCGAAATACCCTCAATTTGTA
* *** *
30347223 GAATTACCATTTTA-CCCTCGATTTATAAAATTACC
1 AAATTACCAAAATACCCCT-GGTTTATAAAATTACC
30347258 ATTTTACCCT
Statistics
Matches: 152, Mismatches: 38, Indels: 15
0.74 0.19 0.07
Matches are distributed among these distances:
53 36 0.24
54 74 0.49
55 39 0.26
56 3 0.02
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.32
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGGTTTATAAAATTACCGAAATACCCTCAATTTGTA
Found at i:30347146 original size:27 final size:27
Alignment explanation
Indices: 30347007--30347133 Score: 177
Period size: 27 Copynumber: 4.7 Consensus size: 27
30346997 TTAGTTTACC
30347007 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
30347034 AAATTA-CAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
30347060 AAATTATCAAAATACCACTGGTTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
30347087 AAATTACCGAAATA-CCCTCAATTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
30347114 AAATTACCAAAATACCCCTG
1 AAATTACCAAAATACCCCTG
30347134 ATTTACAAAA
Statistics
Matches: 87, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
26 29 0.33
27 54 0.62
28 4 0.05
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.29
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:30347198 original size:28 final size:28
Alignment explanation
Indices: 30347135--30347198 Score: 71
Period size: 28 Copynumber: 2.3 Consensus size: 28
30347125 ATACCCCTGA
*
30347135 TTTAC-AAAATTATAGAAAACCCTTGAC
1 TTTACAAAAATTATAGAAAACCATTGAC
*
30347162 TTT-CTAAAAATTATAGAAATACCATTG-G
1 TTTAC-AAAAATTATAGAAA-ACCATTGAC
30347190 TTTACAAAA
1 TTTACAAAA
30347199 TTACTGAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
26 1 0.03
27 3 0.10
28 20 0.65
29 7 0.23
ACGTcount: A:0.45, C:0.14, G:0.08, T:0.33
Consensus pattern (28 bp):
TTTACAAAAATTATAGAAAACCATTGAC
Found at i:30347200 original size:109 final size:107
Alignment explanation
Indices: 30347007--30347231 Score: 265
Period size: 109 Copynumber: 2.1 Consensus size: 107
30346997 TTAGTTTACC
* ** * *
30347007 AAATTACCAAAATACCCCTGGTTTGTAAAATTACAAAATACCCCTGGTTTGTAAAATTATCAAAA
1 AAATTACCAAAATACCCCTGATTTACAAAATTACAAAATACCCCTGCTTTCTAAAATTATCAAAA
***
30347072 TACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTA
66 TACCACTGGTTTACAAAATTACCGAAATACCCTCAATTTGTA
* *
30347114 AAATTACCAAAATACCCCTGATTTACAAAATTATAGAAA-ACCCTTGACTTTCTAAAAATTAT-A
1 AAATTACCAAAATACCCCTGATTTACAAAATTACA-AAATACCCCTG-CTTTCT-AAAATTATCA
* * * *
30347177 GAAATACCATTGGTTTACAAAATTACTGAAATGCCCTCGATTTGTA
63 -AAATACCACTGGTTTACAAAATTACCGAAATACCCTCAATTTGTA
*
30347223 GAATTACCA
1 AAATTACCA
30347232 TTTTACCCTC
Statistics
Matches: 99, Mismatches: 15, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
107 37 0.37
108 8 0.08
109 54 0.55
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (107 bp):
AAATTACCAAAATACCCCTGATTTACAAAATTACAAAATACCCCTGCTTTCTAAAATTATCAAAA
TACCACTGGTTTACAAAATTACCGAAATACCCTCAATTTGTA
Found at i:30347239 original size:109 final size:109
Alignment explanation
Indices: 30347059--30347255 Score: 254
Period size: 109 Copynumber: 1.8 Consensus size: 109
30347049 CCTGGTTTGT
***
30347059 AAAATTATCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
1 AAAATTATCAAAATACCACTGGTTTACAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
30347124 AATACCC-CTGATTTACAAAATTATAGAAAACCCTTGACTTTCTA
66 AATACCCTC-GATTTACAAAATTATAGAAAACCCTTGACTTTCTA
* * * * *
30347168 AAAATTAT-AGAAATACCATTGGTTTACAAAATTACTGAAATGCCCTCGATTTGTAGAATTACCA
1 AAAATTATCA-AAATACCACTGGTTTACAAAATTACCGAAATACCCTCAATTTGTAAAATTACCA
*** *
30347232 TTTTACCCTCGATTTATAAAATTA
65 AAATACCCTCGATTTACAAAATTA
30347256 CCATTTTACC
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
108 1 0.01
109 72 0.97
110 1 0.01
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.32
Consensus pattern (109 bp):
AAAATTATCAAAATACCACTGGTTTACAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
AATACCCTCGATTTACAAAATTATAGAAAACCCTTGACTTTCTA
Found at i:30347240 original size:27 final size:27
Alignment explanation
Indices: 30347210--30347353 Score: 164
Period size: 27 Copynumber: 5.3 Consensus size: 27
30347200 TACTGAAATG
* *
30347210 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
30347237 CCCTCGATTTATAAAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
* * * **
30347264 CCCTTGAATTACAAAATTACTGTTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
30347291 CCCTCGATTTATAAAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
* * * *
30347318 CCCT-TAGTTTACAAAATTATCGTTTTA
1 CCCTCGA-TTTATAAAATTACCATTTTA
*
30347345 CCATCGATT
1 CCCTCGATT
30347354 GTGAAATTAC
Statistics
Matches: 97, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
26 1 0.01
27 95 0.98
28 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.41
Consensus pattern (27 bp):
CCCTCGATTTATAAAATTACCATTTTA
Found at i:30347290 original size:54 final size:54
Alignment explanation
Indices: 30347232--30347353 Score: 194
Period size: 54 Copynumber: 2.3 Consensus size: 54
30347222 AGAATTACCA
30347232 TTTTACCCTCGATTTATAAAATTACCATTTTACCCTT-GAATTACAAAATTA-CTG
1 TTTTACCCTCGATTTATAAAATTACCATTTTACCCTTAG-ATTACAAAATTATC-G
*
30347286 TTTTACCCTCGATTTATAAAATTACCATTTTACCCTTAGTTTACAAAATTATCG
1 TTTTACCCTCGATTTATAAAATTACCATTTTACCCTTAGATTACAAAATTATCG
*
30347340 TTTTACCATCGATT
1 TTTTACCCTCGATT
30347354 GTGAAATTAC
Statistics
Matches: 64, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
54 62 0.97
55 2 0.03
ACGTcount: A:0.31, C:0.20, G:0.06, T:0.43
Consensus pattern (54 bp):
TTTTACCCTCGATTTATAAAATTACCATTTTACCCTTAGATTACAAAATTATCG
Found at i:30347334 original size:81 final size:81
Alignment explanation
Indices: 30347191--30347372 Score: 206
Period size: 81 Copynumber: 2.3 Consensus size: 81
30347181 TACCATTGGT
* * * * *
30347191 TTACAAAATTACTGAAATGCCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATAAAATTA
1 TTACAAAATTACTGAAATACCCTCGATTTATAAAATTACCATTTTACCCTAGATTTACAAAATTA
30347256 CCATTTTACCCTTGAA
66 CCATTTTACCCTTGAA
***
30347272 TTACAAAATTACTGTTTTACCCTCGATTTATAAAATTACCATTTTACCCTTAG-TTTACAAAATT
1 TTACAAAATTACTGAAATACCCTCGATTTATAAAATTACCATTTTACCC-TAGATTTACAAAATT
* * * *
30347336 ATCGTTTTACCATCG-A
65 ACCATTTTACCCTTGAA
***
30347352 TTGTGAAATTACTGAAATACC
1 TTACAAAATTACTGAAATACC
30347373 TTTGTAGGAT
Statistics
Matches: 82, Mismatches: 18, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
80 16 0.20
81 64 0.78
82 2 0.02
ACGTcount: A:0.34, C:0.20, G:0.08, T:0.38
Consensus pattern (81 bp):
TTACAAAATTACTGAAATACCCTCGATTTATAAAATTACCATTTTACCCTAGATTTACAAAATTA
CCATTTTACCCTTGAA
Found at i:30347388 original size:27 final size:27
Alignment explanation
Indices: 30347358--30347767 Score: 414
Period size: 27 Copynumber: 15.3 Consensus size: 27
30347348 TCGATTGTGA
* ** *
30347358 AATTACTGAAATACCTTTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* ** *
30347385 AATTA-CAAAATACCCCTTGT-TTGTAA
1 AATTACCGAAATACCCC-TGTAGGGTAG
* ** *
30347411 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* * * *
30347438 AATTACCGAAATACCCTTATAGAGCAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
30347465 AATTACCGGAATACCCTTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
30347492 AATTACCAAAATATCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
30347519 AATTACCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
30347546 AATTACCAAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
30347573 AATTATTGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
30347600 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
30347627 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
30347654 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
30347681 AATTACCGAAATACCCCTGTAAAGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
30347708 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
30347735 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
30347761 AATTACC
1 AATTACC
30347768 ATTTTACCTC
Statistics
Matches: 318, Mismatches: 61, Indels: 9
0.82 0.16 0.02
Matches are distributed among these distances:
26 32 0.10
27 286 0.90
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:30348246 original size:22 final size:22
Alignment explanation
Indices: 30348194--30348258 Score: 87
Period size: 22 Copynumber: 3.0 Consensus size: 22
30348184 TTAAAGCCTT
*
30348194 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTTTGTGCCAAC
*
30348216 CT-ACATATGGCTTTGTGCCAAC
1 CTGA-TTATGGCTTTGTGCCAAC
*
30348238 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTTTGTGCCAA
30348259 ACGTATTTGC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 1 0.03
22 35 0.95
23 1 0.03
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (22 bp):
CTGATTATGGCTTTGTGCCAAC
Found at i:30348447 original size:27 final size:27
Alignment explanation
Indices: 30348417--30348518 Score: 125
Period size: 27 Copynumber: 3.8 Consensus size: 27
30348407 ATTCTGTTAA
* *
30348417 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
30348444 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
* *
30348471 GTGGCTCTGCCATAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
30348498 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
30348519 ATAACTGAGC
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
26 8 0.12
27 50 0.77
28 7 0.11
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.37
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:30348694 original size:6 final size:6
Alignment explanation
Indices: 30348685--30348760 Score: 57
Period size: 6 Copynumber: 12.3 Consensus size: 6
30348675 TACCTGATAT
* * *
30348685 TGATTC TGATTT TGATTT TG-TTACC TGATAC TGATTC TGATTC TGATTC
1 TGATTC TGATTC TGATTC TGATT--C TGATTC TGATTC TGATTC TGATTC
* *
30348734 T-ATCACC TAATTC TGATTC TGATTC TG
1 TGAT--TC TGATTC TGATTC TGATTC TG
30348761 TCACCTAAAA
Statistics
Matches: 57, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
5 4 0.07
6 46 0.81
7 4 0.07
8 3 0.05
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (6 bp):
TGATTC
Found at i:30348710 original size:31 final size:31
Alignment explanation
Indices: 30348655--30348757 Score: 125
Period size: 31 Copynumber: 3.3 Consensus size: 31
30348645 TTCCATTCAC
* *
30348655 ATTCTGATTTTTAATTCTGTTACCTGATATTG
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
*
30348687 ATTCTGATTTTGATTTTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* * * * *
30348718 ATTCTGATTCTGATTCTATCACCTAATTCTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
30348749 ATTCTGATT
1 ATTCTGATT
30348758 CTGTCACCTA
Statistics
Matches: 62, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
31 55 0.89
32 7 0.11
ACGTcount: A:0.21, C:0.16, G:0.13, T:0.50
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:30348746 original size:25 final size:26
Alignment explanation
Indices: 30348718--30348784 Score: 100
Period size: 25 Copynumber: 2.6 Consensus size: 26
30348708 CCTGATACTG
30348718 ATTCTGATTCTGATTCTATCACCT-A
1 ATTCTGATTCTGATTCTATCACCTAA
*
30348743 ATTCTGATTCTGATTCTGTCACCTAAA
1 ATTCTGATTCTGATTCTATCACCT-AA
*
30348770 ATTTTGATTCTGATT
1 ATTCTGATTCTGATT
30348785 TTGATTCTAG
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
25 23 0.61
27 15 0.39
ACGTcount: A:0.24, C:0.19, G:0.10, T:0.46
Consensus pattern (26 bp):
ATTCTGATTCTGATTCTATCACCTAA
Found at i:30357878 original size:33 final size:33
Alignment explanation
Indices: 30357841--30357907 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
30357831 ATGAAAACTG
*
30357841 TGGGTTTTTGTAAGAGGGATTATGAATCGACTA
1 TGGGTTTTTATAAGAGGGATTATGAATCGACTA
30357874 TGGGTTTTTATAAGAGGGATTATGAATCGACTA
1 TGGGTTTTTATAAGAGGGATTATGAATCGACTA
30357907 T
1 T
30357908 ACTTGGGTAG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.28, C:0.06, G:0.28, T:0.37
Consensus pattern (33 bp):
TGGGTTTTTATAAGAGGGATTATGAATCGACTA
Found at i:30363903 original size:59 final size:59
Alignment explanation
Indices: 30363811--30363928 Score: 236
Period size: 59 Copynumber: 2.0 Consensus size: 59
30363801 TCGGTTTGGC
30363811 GGTGATAAAAATTACAAGGTGTAGTAGGTTTTGAAATGAGCACTACTTGGAGATCATGT
1 GGTGATAAAAATTACAAGGTGTAGTAGGTTTTGAAATGAGCACTACTTGGAGATCATGT
30363870 GGTGATAAAAATTACAAGGTGTAGTAGGTTTTGAAATGAGCACTACTTGGAGATCATGT
1 GGTGATAAAAATTACAAGGTGTAGTAGGTTTTGAAATGAGCACTACTTGGAGATCATGT
30363929 TCTTTGTCTA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 59 1.00
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.31
Consensus pattern (59 bp):
GGTGATAAAAATTACAAGGTGTAGTAGGTTTTGAAATGAGCACTACTTGGAGATCATGT
Found at i:30372007 original size:40 final size:40
Alignment explanation
Indices: 30371952--30372059 Score: 173
Period size: 40 Copynumber: 2.7 Consensus size: 40
30371942 TGGAAAAAAA
*
30371952 TATAACCGGGTTAAGTCCCGAAGGCATTCGTACGGGTTAT
1 TATAACTGGGTTAAGTCCCGAAGGCATTCGTACGGGTTAT
* *
30371992 TATAACTGGGTTAAGTCCCAAAGGCATTCGTGCGGGTTAT
1 TATAACTGGGTTAAGTCCCGAAGGCATTCGTACGGGTTAT
30372032 TATAA-TCGGGTTAAGTCCCGAAGGCATT
1 TATAACT-GGGTTAAGTCCCGAAGGCATT
30372060 TGTGCTGGTT
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
39 1 0.02
40 62 0.98
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.29
Consensus pattern (40 bp):
TATAACTGGGTTAAGTCCCGAAGGCATTCGTACGGGTTAT
Found at i:30375390 original size:28 final size:28
Alignment explanation
Indices: 30375342--30375432 Score: 132
Period size: 28 Copynumber: 3.2 Consensus size: 28
30375332 ATGTGACAGT
30375342 CACCAGATACAGAT-ATCTTGTGGCAGTGC
1 CACCAGA-ACAGATAAT-TTGTGGCAGTGC
*
30375371 CACCAGAACAGATAATTTGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCAGTGC
30375399 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGATAATTTGTGGCAGT-GC
30375427 CACCAG
1 CACCAG
30375433 GACGCTTCCT
Statistics
Matches: 58, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
28 49 0.84
29 9 0.16
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.20
Consensus pattern (28 bp):
CACCAGAACAGATAATTTGTGGCAGTGC
Found at i:30375585 original size:28 final size:28
Alignment explanation
Indices: 30375538--30375602 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
30375528 AAATTAACCC
*
30375538 TAGGGGTATAAAGGTCATTTTGCACACA
1 TAGGGGTATAAAGGTAATTTTGCACACA
* *
30375566 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCACACA
30375594 TAGGGGTAT
1 TAGGGGTAT
30375603 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.31, C:0.09, G:0.28, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCACACA
Found at i:30388105 original size:48 final size:48
Alignment explanation
Indices: 30388032--30388331 Score: 501
Period size: 48 Copynumber: 6.2 Consensus size: 48
30388022 TACAAGATAA
* *
30388032 ATATATATATGTGCGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGT--GGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
30388082 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
30388130 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
**
30388178 ATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
30388226 ATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
30388274 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
30388322 ATGTGTATAT
1 ATATGTATAT
30388332 ATTGTGGCCG
Statistics
Matches: 235, Mismatches: 15, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
48 224 0.95
50 11 0.05
ACGTcount: A:0.36, C:0.07, G:0.25, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:30388514 original size:37 final size:37
Alignment explanation
Indices: 30388464--30388534 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
30388454 AGAAATATAT
*
30388464 TCTGGGTAAGACCCGATGACTACGTGTGGCGATTTTG
1 TCTGGGTAAGACCCGATAACTACGTGTGGCGATTTTG
*
30388501 TCTGGGTAAGACCCGATAACTACGTGTGGGGATT
1 TCTGGGTAAGACCCGATAACTACGTGTGGCGATT
30388535 ATTCGAGCTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.21, C:0.18, G:0.32, T:0.28
Consensus pattern (37 bp):
TCTGGGTAAGACCCGATAACTACGTGTGGCGATTTTG
Found at i:30389742 original size:41 final size:40
Alignment explanation
Indices: 30389652--30389752 Score: 130
Period size: 40 Copynumber: 2.5 Consensus size: 40
30389642 CATCCAATGC
* * *
30389652 TACCGAAGTACAAATAGGGGTGTGTATGTGCAATCAGGGG
1 TACCAAAGTACAAATAGGGGTGCGTACGTGCAATCAGGGG
* *
30389692 TACCAAAGTACAAATAGGGGTGCGTACGTGTAATTCAGGTG
1 TACCAAAGTACAAATAGGGGTGCGTACGTGCAA-TCAGGGG
* *
30389733 TACCAAAGTAGAAACAGGGG
1 TACCAAAGTACAAATAGGGG
30389753 CATGTATGTG
Statistics
Matches: 53, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
40 29 0.55
41 24 0.45
ACGTcount: A:0.34, C:0.14, G:0.32, T:0.21
Consensus pattern (40 bp):
TACCAAAGTACAAATAGGGGTGCGTACGTGCAATCAGGGG
Found at i:30389765 original size:81 final size:80
Alignment explanation
Indices: 30389659--30389948 Score: 357
Period size: 81 Copynumber: 3.6 Consensus size: 80
30389649 TGCTACCGAA
* ** * * * * * ** *
30389659 GTACAAATAGGGGTGTGTATGTGCAA-TCAGGGGTACCAAAGTACAAATAGGGGTGCGTACGTGT
1 GTACAAAAAGGGGCATGTATGTGCAATTTAGGAGTACCGAAGTACAAAAAAGGGCACATA-GTGT
* ** *
30389723 AATTCAGGTGTACCAAA
65 AATTTAGG-GTACTGAT
* * * * *
30389740 GTAGAAACAGGGGCATGTATGTGCAATTTAGGGGTACTGAAGTACAAAAAACGGCACATATGTGT
1 GTACAAAAAGGGGCATGTATGTGCAATTTAGGAGTACCGAAGTACAAAAAAGGGCACATA-GTGT
30389805 AATTTAGGGTACTGAT
65 AATTTAGGGTACTGAT
*
30389821 GTACAAAAAGGGGCATGTATGTGCAATTTAGGAGTACCGAAGTACAAAAAAGGGCACATATTGTA
1 GTACAAAAAGGGGCATGTATGTGCAATTTAGGAGTACCGAAGTACAAAAAAGGGCACATAGTGTA
30389886 ATTTAGGGTACTGAT
66 ATTTAGGGTACTGAT
30389901 GTACAAAAAGGGGCATGTATGTGCAATTTAGGAGTACCGAAGTACAAA
1 GTACAAAAAGGGGCATGTATGTGCAATTTAGGAGTACCGAAGTACAAA
30389949 CAGGGGTACT
Statistics
Matches: 184, Mismatches: 24, Indels: 3
0.87 0.11 0.01
Matches are distributed among these distances:
80 67 0.36
81 82 0.45
82 35 0.19
ACGTcount: A:0.36, C:0.12, G:0.28, T:0.24
Consensus pattern (80 bp):
GTACAAAAAGGGGCATGTATGTGCAATTTAGGAGTACCGAAGTACAAAAAAGGGCACATAGTGTA
ATTTAGGGTACTGAT
Found at i:30389783 original size:41 final size:41
Alignment explanation
Indices: 30389656--30389954 Score: 264
Period size: 41 Copynumber: 7.4 Consensus size: 41
30389646 CAATGCTACC
* ** * *
30389656 GAAGTACAAATAGGGGTGTGTATGTGCAA-TCAGGGGTACC
1 GAAGTACAAAAAGGGGCATGTATGTGCAATTTAGGGGTACT
* * *** * * * * *
30389696 AAAGTACAAATAGGGGTGCGTACGTGTAATTCAGGTGTACC
1 GAAGTACAAAAAGGGGCATGTATGTGCAATTTAGGGGTACT
* * *
30389737 AAAGTAGAAACAGGGGCATGTATGTGCAATTTAGGGGTACT
1 GAAGTACAAAAAGGGGCATGTATGTGCAATTTAGGGGTACT
** ** *
30389778 GAAGTACAAAAAACGGCACATATGTGTAATTTA-GGGTACT
1 GAAGTACAAAAAGGGGCATGTATGTGCAATTTAGGGGTACT
* * *
30389818 GATGTACAAAAAGGGGCATGTATGTGCAATTTAGGAGTACC
1 GAAGTACAAAAAGGGGCATGTATGTGCAATTTAGGGGTACT
* ** *
30389859 GAAGTACAAAAAAGGGCACATAT-TGTAATTTA-GGGTACT
1 GAAGTACAAAAAGGGGCATGTATGTGCAATTTAGGGGTACT
* * *
30389898 GATGTACAAAAAGGGGCATGTATGTGCAATTTAGGAGTACC
1 GAAGTACAAAAAGGGGCATGTATGTGCAATTTAGGGGTACT
*
30389939 GAAGTACAAACAGGGG
1 GAAGTACAAAAAGGGG
30389955 TACTGAAGTA
Statistics
Matches: 208, Mismatches: 47, Indels: 7
0.79 0.18 0.03
Matches are distributed among these distances:
39 24 0.12
40 75 0.36
41 109 0.52
ACGTcount: A:0.35, C:0.12, G:0.29, T:0.23
Consensus pattern (41 bp):
GAAGTACAAAAAGGGGCATGTATGTGCAATTTAGGGGTACT
Found at i:30389826 original size:40 final size:40
Alignment explanation
Indices: 30389757--30389948 Score: 233
Period size: 40 Copynumber: 4.8 Consensus size: 40
30389747 CAGGGGCATG
*
30389757 TATGTGCAATTTAGGGGTACTGAAGTACAAAAAACGGCACA
1 TATGTGCAATTTA-GGGTACTGAAGTACAAAAAAGGGCACA
* * * **
30389798 TATGTGTAATTTAGGGTACTGATGTACAAAAAGGGGCATG
1 TATGTGCAATTTAGGGTACTGAAGTACAAAAAAGGGCACA
*
30389838 TATGTGCAATTTAGGAGTACCGAAGTACAAAAAAGGGCACA
1 TATGTGCAATTTAGG-GTACTGAAGTACAAAAAAGGGCACA
* * * **
30389879 TAT-TGTAATTTAGGGTACTGATGTACAAAAAGGGGCATG
1 TATGTGCAATTTAGGGTACTGAAGTACAAAAAAGGGCACA
*
30389918 TATGTGCAATTTAGGAGTACCGAAGTACAAA
1 TATGTGCAATTTAGG-GTACTGAAGTACAAA
30389949 CAGGGGTACT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 23 0.18
40 56 0.44
41 48 0.38
ACGTcount: A:0.37, C:0.11, G:0.26, T:0.26
Consensus pattern (40 bp):
TATGTGCAATTTAGGGTACTGAAGTACAAAAAAGGGCACA
Found at i:30389919 original size:80 final size:81
Alignment explanation
Indices: 30389748--30389948 Score: 368
Period size: 80 Copynumber: 2.5 Consensus size: 81
30389738 AAGTAGAAAC
* *
30389748 AGGGGCATGTATGTGCAATTTAGGGGTACTGAAGTACAAAAAACGGCACATATGTGTAATTTAGG
1 AGGGGCATGTATGTGCAATTTAGGAGTACCGAAGTACAAAAAACGGCACATATGTGTAATTTAGG
30389813 GTACTGATGTACAAAA
66 GTACTGATGTACAAAA
*
30389829 AGGGGCATGTATGTGCAATTTAGGAGTACCGAAGTACAAAAAAGGGCACATAT-TGTAATTTAGG
1 AGGGGCATGTATGTGCAATTTAGGAGTACCGAAGTACAAAAAACGGCACATATGTGTAATTTAGG
30389893 GTACTGATGTACAAAA
66 GTACTGATGTACAAAA
30389909 AGGGGCATGTATGTGCAATTTAGGAGTACCGAAGTACAAA
1 AGGGGCATGTATGTGCAATTTAGGAGTACCGAAGTACAAA
30389949 CAGGGGTACT
Statistics
Matches: 117, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
80 67 0.57
81 50 0.43
ACGTcount: A:0.36, C:0.11, G:0.27, T:0.25
Consensus pattern (81 bp):
AGGGGCATGTATGTGCAATTTAGGAGTACCGAAGTACAAAAAACGGCACATATGTGTAATTTAGG
GTACTGATGTACAAAA
Found at i:30389962 original size:20 final size:20
Alignment explanation
Indices: 30389934--30389974 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
30389924 CAATTTAGGA
*
30389934 GTACCGAAGTACAAACAGGG
1 GTACCGAAGTAAAAACAGGG
* *
30389954 GTACTGAAGTAAAAATAGGG
1 GTACCGAAGTAAAAACAGGG
30389974 G
1 G
30389975 CATGTCTGTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.41, C:0.12, G:0.32, T:0.15
Consensus pattern (20 bp):
GTACCGAAGTAAAAACAGGG
Found at i:30393197 original size:57 final size:57
Alignment explanation
Indices: 30393096--30393231 Score: 181
Period size: 57 Copynumber: 2.4 Consensus size: 57
30393086 CTCCCTTTAA
*
30393096 ACAAAGGCTTCCTTTAACAGAGATAGCAACAAAGGCTCCCTTTTAACAAAGATTACC
1 ACAAAGGCTTCCTTTAACAGAGATAACAACAAAGGCTCCCTTTTAACAAAGATTACC
* *
30393153 ACAAAGGCTTCCATTTAACAGAGATAACCACAAAGGCT-TCTTTTAACAAAGA-TAGCC
1 ACAAAGGCTTCC-TTTAACAGAGATAACAACAAAGGCTCCCTTTTAACAAAGATTA-CC
* *
30393210 ATAGAGGCTT--TTTAACAGAGAT
1 ACAAAGGCTTCCTTTAACAGAGAT
30393232 CGCCACAAAA
Statistics
Matches: 72, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
54 12 0.17
56 2 0.03
57 35 0.49
58 23 0.32
ACGTcount: A:0.39, C:0.21, G:0.15, T:0.24
Consensus pattern (57 bp):
ACAAAGGCTTCCTTTAACAGAGATAACAACAAAGGCTCCCTTTTAACAAAGATTACC
Found at i:30393231 original size:26 final size:28
Alignment explanation
Indices: 30393096--30393273 Score: 155
Period size: 29 Copynumber: 6.3 Consensus size: 28
30393086 CTCCCTTTAA
* *
30393096 ACAAAGGCTTCCTTTAACAGAGATAGCA
1 ACAAAGGCTTCTTTTAACAGAGATAGCC
* *
30393124 ACAAAGGCTCCCTTTTAACAAAGATTA-CC
1 ACAAAGGCT-TCTTTTAACAGAGA-TAGCC
* *
30393153 ACAAAGGCTTCCATTTAACAGAGATAACC
1 ACAAAGGCTT-CTTTTAACAGAGATAGCC
*
30393182 ACAAAGGCTTCTTTTAACAAAGATAGCC
1 ACAAAGGCTTCTTTTAACAGAGATAGCC
* * *
30393210 ATAGAGGC-T-TTTTAACAGAGATCGCC
1 ACAAAGGCTTCTTTTAACAGAGATAGCC
* * * * * *
30393236 ACAAAAGTTTCCATTTAATAAATATAGCC
1 ACAAAGGCTT-CTTTTAACAGAGATAGCC
30393265 ACAAAGGCT
1 ACAAAGGCT
30393274 AACTTAAATA
Statistics
Matches: 118, Mismatches: 25, Indels: 13
0.76 0.16 0.08
Matches are distributed among these distances:
26 19 0.16
27 2 0.02
28 32 0.27
29 63 0.53
30 2 0.02
ACGTcount: A:0.39, C:0.22, G:0.15, T:0.24
Consensus pattern (28 bp):
ACAAAGGCTTCTTTTAACAGAGATAGCC
Found at i:30393267 original size:83 final size:84
Alignment explanation
Indices: 30393096--30393273 Score: 205
Period size: 83 Copynumber: 2.1 Consensus size: 84
30393086 CTCCCTTTAA
* * *
30393096 ACAAAGGCTTCCTTTAACAGAGATAGCAACAAAGGCTCCCTTTTAACAAAGATTACCACAAAGGC
1 ACAAAGGCTTCCTTTAACAAAGATAGCAACAAAGGCT--CTTTTAACAAAGATCACCACAAAAGC
*
30393161 TTCCATTTAACAGAGATAACC
64 TTCCATTTAACAAAGATAACC
* * * * * * *
30393182 ACAAAGGCTTCTTTTAACAAAGATAGCCATAGAGGCT-TTTTAACAGAGATCGCCACAAAAGTTT
1 ACAAAGGCTTCCTTTAACAAAGATAGCAACAAAGGCTCTTTTAACAAAGATCACCACAAAAGCTT
* * *
30393246 CCATTTAATAAATATAGCC
66 CCATTTAACAAAGATAACC
30393265 ACAAAGGCT
1 ACAAAGGCT
30393274 AACTTAAATA
Statistics
Matches: 78, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
83 46 0.59
86 32 0.41
ACGTcount: A:0.39, C:0.22, G:0.15, T:0.24
Consensus pattern (84 bp):
ACAAAGGCTTCCTTTAACAAAGATAGCAACAAAGGCTCTTTTAACAAAGATCACCACAAAAGCTT
CCATTTAACAAAGATAACC
Found at i:30402460 original size:10 final size:10
Alignment explanation
Indices: 30402447--30402471 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
30402437 GCACATATAA
30402447 TCACATTTAG
1 TCACATTTAG
30402457 TCACATTTAG
1 TCACATTTAG
30402467 TCACA
1 TCACA
30402472 GTGTATGATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.32, C:0.24, G:0.08, T:0.36
Consensus pattern (10 bp):
TCACATTTAG
Found at i:30405240 original size:44 final size:43
Alignment explanation
Indices: 30405112--30405256 Score: 127
Period size: 44 Copynumber: 3.4 Consensus size: 43
30405102 GAACGTCCTG
* * *
30405112 GACATGGTCTTACATGT-AATTCAGTATCGATGCCTCTGTCCCA
1 GACATGGTCTTACACGTAAATTCA-AATCGATGCCTATGTCCCA
* * * *
30405155 GATAGGGTCTT--ACGTGAAA-TCAGATACAATGCCTATGTCCCA
1 GACATGGTCTTACACGT-AAATTCAAAT-CGATGCCTATGTCCCA
*
30405197 GACATGGTCTTACACGTAAATCTCAAATCGATGCCTGTGTCCCA
1 GACATGGTCTTACACGTAAAT-TCAAATCGATGCCTATGTCCCA
* **
30405241 GATACAGTCTTACACG
1 GACATGGTCTTACACG
30405257 ATATCTCAGA
Statistics
Matches: 81, Mismatches: 14, Indels: 13
0.75 0.13 0.12
Matches are distributed among these distances:
41 5 0.06
42 26 0.32
43 14 0.17
44 31 0.38
45 5 0.06
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (43 bp):
GACATGGTCTTACACGTAAATTCAAATCGATGCCTATGTCCCA
Found at i:30407367 original size:25 final size:26
Alignment explanation
Indices: 30407329--30407401 Score: 105
Period size: 25 Copynumber: 2.9 Consensus size: 26
30407319 TTGAATGATC
*
30407329 TCGACAATTAAATTGTAAATTATAA-
1 TCGACAATTGAATTGTAAATTATAAT
30407354 TCGACAATTGAATTGTAAATTATAAT
1 TCGACAATTGAATTGTAAATTATAAT
* *
30407380 TTG-CAATTGAATTATAAATTAT
1 TCGACAATTGAATTGTAAATTAT
30407402 GTAAGTAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
25 42 0.95
26 2 0.05
ACGTcount: A:0.44, C:0.07, G:0.10, T:0.40
Consensus pattern (26 bp):
TCGACAATTGAATTGTAAATTATAAT
Found at i:30407621 original size:29 final size:29
Alignment explanation
Indices: 30407588--30407648 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
30407578 TGGCCCATAT
30407588 ATCACAACACAAATAAGTGAGTACTCACA
1 ATCACAACACAAATAAGTGAGTACTCACA
30407617 ATCACAACACAAATAAGTGAGTACTCACA
1 ATCACAACACAAATAAGTGAGTACTCACA
30407646 ATC
1 ATC
30407649 CTATGGCATG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.48, C:0.25, G:0.10, T:0.18
Consensus pattern (29 bp):
ATCACAACACAAATAAGTGAGTACTCACA
Found at i:30409756 original size:44 final size:42
Alignment explanation
Indices: 30409611--30409767 Score: 156
Period size: 43 Copynumber: 3.7 Consensus size: 42
30409601 AGCTTGTATA
* * *
30409611 ATGCCAATGTCCCAGACGTGGTCGTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGAAATCAAA-ATCG
* * * * *
30409654 ATGCCACTGTCCCAGATAGGGTCTTACATGAAATC-ATATACA
1 ATGCCAATGTCCCAGACATGGTCTTACATGAAATCAAAAT-CG
*
30409696 ATGCCAATGTGCCAGACATGGTCTTAGACAT-AAATCACAAATCG
1 ATGCCAATGTCCCAGACATGGTCTT--ACATGAAATCA-AAATCG
* *
30409740 ATGCCAATGTCTCAGACGTGGTCTTACA
1 ATGCCAATGTCCCAGACATGGTCTTACA
30409768 CGATAACACA
Statistics
Matches: 92, Mismatches: 17, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
41 2 0.02
42 26 0.28
43 34 0.37
44 27 0.29
45 3 0.03
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGAAATCAAAATCG
Found at i:30411622 original size:21 final size:21
Alignment explanation
Indices: 30411596--30411636 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
30411586 TGGTCCGTAA
30411596 GCCCATTGGGCCCAATTTTTG
1 GCCCATTGGGCCCAATTTTTG
* *
30411617 GCCCATTTGGCCCATTTTTT
1 GCCCATTGGGCCCAATTTTT
30411637 CGAAGTACGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.12, C:0.29, G:0.20, T:0.39
Consensus pattern (21 bp):
GCCCATTGGGCCCAATTTTTG
Found at i:30419493 original size:51 final size:51
Alignment explanation
Indices: 30419408--30419556 Score: 207
Period size: 51 Copynumber: 2.9 Consensus size: 51
30419398 AGGATGTTAC
*
30419408 AGTGGTCC-TCACATAGTACCAC-CATTGTA-GCCAAAGCTATTTTCTTCACAA
1 AGTGG-CCTTCACATAGTACCACAC-TT-TAGGCCAAAGCTATTTTATTCACAA
* *
30419459 AGTGGCCTTCACATAGTCCCACAC-TTATGTCCAAAGCTATTTTATTCACAA
1 AGTGGCCTTCACATAGTACCACACTTTA-GGCCAAAGCTATTTTATTCACAA
30419510 AGTGGCCTTCACATAGTACCACACTTTAGGCCAAAGCTATTTTATTC
1 AGTGGCCTTCACATAGTACCACACTTTAGGCCAAAGCTATTTTATTC
30419557 CTAAGGTTCA
Statistics
Matches: 88, Mismatches: 5, Indels: 10
0.85 0.05 0.10
Matches are distributed among these distances:
49 2 0.02
50 3 0.03
51 79 0.90
52 4 0.05
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (51 bp):
AGTGGCCTTCACATAGTACCACACTTTAGGCCAAAGCTATTTTATTCACAA
Found at i:30419625 original size:24 final size:24
Alignment explanation
Indices: 30419593--30419663 Score: 88
Period size: 24 Copynumber: 2.8 Consensus size: 24
30419583 CTTAGCACCA
*
30419593 TGCCATGGACTTGTTTCACTTAGG
1 TGCCATGGACTTATTTCACTTAGG
*
30419617 TGCCATGGACTTATTTCACTTAGCACAT
1 TGCCATGGACTTATTTCACTTAG----G
30419645 TGCCATGGACTTATTTCAC
1 TGCCATGGACTTATTTCAC
30419664 AGTTGAGGGT
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
24 22 0.54
28 19 0.46
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37
Consensus pattern (24 bp):
TGCCATGGACTTATTTCACTTAGG
Found at i:30419649 original size:28 final size:27
Alignment explanation
Indices: 30419580--30419663 Score: 111
Period size: 28 Copynumber: 3.1 Consensus size: 27
30419570 GGGAAATTTC
*
30419580 TCACTTAGCACCATGCCATGGACTTGTT
1 TCACTTAGCA-CATGCCATGGACTTATT
*
30419608 TCACTTAG---GTGCCATGGACTTATT
1 TCACTTAGCACATGCCATGGACTTATT
30419632 TCACTTAGCACATTGCCATGGACTTATT
1 TCACTTAGCACA-TGCCATGGACTTATT
30419660 TCAC
1 TCAC
30419664 AGTTGAGGGT
Statistics
Matches: 49, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
24 22 0.45
28 27 0.55
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.35
Consensus pattern (27 bp):
TCACTTAGCACATGCCATGGACTTATT
Found at i:30427606 original size:51 final size:51
Alignment explanation
Indices: 30427528--30427676 Score: 223
Period size: 51 Copynumber: 2.9 Consensus size: 51
30427518 AGGATGTTAC
* *
30427528 AGTGGTCC-TCACATAGTACCACCCTTGTAGCCAAAGCTATTTTCTTCACAA
1 AGTGG-CCTTCACATAGTACCACACTTGTAGCCAAAGCTATTTTATTCACAA
*
30427579 AGTGGCCTTCACATAGTCCCACACTTGT-GTCCAAAGCTATTTTATTCACAA
1 AGTGGCCTTCACATAGTACCACACTTGTAG-CCAAAGCTATTTTATTCACAA
30427630 AGTGGCCTTCACATAGTACCACACTTG-AGGCCAAAGCTATTTTATTC
1 AGTGGCCTTCACATAGTACCACACTTGTA-GCCAAAGCTATTTTATTC
30427677 CTAAGGTTCA
Statistics
Matches: 90, Mismatches: 4, Indels: 8
0.88 0.04 0.08
Matches are distributed among these distances:
50 3 0.03
51 86 0.96
52 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.30
Consensus pattern (51 bp):
AGTGGCCTTCACATAGTACCACACTTGTAGCCAAAGCTATTTTATTCACAA
Found at i:30427745 original size:24 final size:24
Alignment explanation
Indices: 30427712--30427862 Score: 185
Period size: 24 Copynumber: 6.0 Consensus size: 24
30427702 ACTTAGCACC
*
30427712 ATGCCATGGACTTGTTTCACTTAG
1 ATGCCATGGACTTATTTCACTTAG
*
30427736 GTGCCATGGACTTATTTCACTTAG
1 ATGCCATGGACTTATTTCACTTAG
30427760 CACATTGCCATGGACTTATTTCACTTAG
1 ---A-TGCCATGGACTTATTTCACTTAG
*
30427788 ATGCCATGGTCTTATTTCACTTAG
1 ATGCCATGGACTTATTTCACTTAG
30427812 CACATTGCCATGGACTTATTTCACTTAG
1 ---A-TGCCATGGACTTATTTCACTTAG
* *
30427840 ATGTCATGGTCTTATTTCACTTA
1 ATGCCATGGACTTATTTCACTTA
30427863 ACACAATGCC
Statistics
Matches: 112, Mismatches: 7, Indels: 16
0.83 0.05 0.12
Matches are distributed among these distances:
24 64 0.57
25 2 0.02
27 1 0.01
28 45 0.40
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.39
Consensus pattern (24 bp):
ATGCCATGGACTTATTTCACTTAG
Found at i:30427775 original size:52 final size:52
Alignment explanation
Indices: 30427700--30427874 Score: 280
Period size: 52 Copynumber: 3.4 Consensus size: 52
30427690 GGGAAATTTC
* * *
30427700 TCACTTAGCACCA-TGCCATGGACTTGTTTCACTTAGGTGCCATGGACTTATT
1 TCACTTAGCA-CATTGCCATGGACTTATTTCACTTAGATGCCATGGTCTTATT
30427752 TCACTTAGCACATTGCCATGGACTTATTTCACTTAGATGCCATGGTCTTATT
1 TCACTTAGCACATTGCCATGGACTTATTTCACTTAGATGCCATGGTCTTATT
*
30427804 TCACTTAGCACATTGCCATGGACTTATTTCACTTAGATGTCATGGTCTTATT
1 TCACTTAGCACATTGCCATGGACTTATTTCACTTAGATGCCATGGTCTTATT
* *
30427856 TCACTTAACACAATGCCAT
1 TCACTTAGCACATTGCCAT
30427875 ATCCTGGATA
Statistics
Matches: 116, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
51 2 0.02
52 114 0.98
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (52 bp):
TCACTTAGCACATTGCCATGGACTTATTTCACTTAGATGCCATGGTCTTATT
Found at i:30430629 original size:51 final size:51
Alignment explanation
Indices: 30430551--30430699 Score: 223
Period size: 51 Copynumber: 2.9 Consensus size: 51
30430541 AGGATGTTAC
* *
30430551 AGTGGTCC-TCACATAGTACCACCCTTGTAGCCAAAGCTATTTTCTTCACAA
1 AGTGG-CCTTCACATAGTACCACACTTGTAGCCAAAGCTATTTTATTCACAA
*
30430602 AGTGGCCTTCACATAGTCCCACACTTGT-GTCCAAAGCTATTTTATTCACAA
1 AGTGGCCTTCACATAGTACCACACTTGTAG-CCAAAGCTATTTTATTCACAA
30430653 AGTGGCCTTCACATAGTACCACACTTG-AGGCCAAAGCTATTTTATTC
1 AGTGGCCTTCACATAGTACCACACTTGTA-GCCAAAGCTATTTTATTC
30430700 CTAAGGTTCA
Statistics
Matches: 90, Mismatches: 4, Indels: 8
0.88 0.04 0.08
Matches are distributed among these distances:
50 3 0.03
51 86 0.96
52 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.30
Consensus pattern (51 bp):
AGTGGCCTTCACATAGTACCACACTTGTAGCCAAAGCTATTTTATTCACAA
Found at i:30430768 original size:24 final size:24
Alignment explanation
Indices: 30430735--30430885 Score: 185
Period size: 24 Copynumber: 6.0 Consensus size: 24
30430725 ACTTAGCACC
*
30430735 ATGCCATGGACTTGTTTCACTTAG
1 ATGCCATGGACTTATTTCACTTAG
*
30430759 GTGCCATGGACTTATTTCACTTAG
1 ATGCCATGGACTTATTTCACTTAG
30430783 CACATTGCCATGGACTTATTTCACTTAG
1 ---A-TGCCATGGACTTATTTCACTTAG
*
30430811 ATGCCATGGTCTTATTTCACTTAG
1 ATGCCATGGACTTATTTCACTTAG
30430835 CACATTGCCATGGACTTATTTCACTTAG
1 ---A-TGCCATGGACTTATTTCACTTAG
* *
30430863 ATGTCATGGTCTTATTTCACTTA
1 ATGCCATGGACTTATTTCACTTA
30430886 ACACAATGCC
Statistics
Matches: 112, Mismatches: 7, Indels: 16
0.83 0.05 0.12
Matches are distributed among these distances:
24 64 0.57
25 2 0.02
27 1 0.01
28 45 0.40
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.39
Consensus pattern (24 bp):
ATGCCATGGACTTATTTCACTTAG
Found at i:30430798 original size:52 final size:52
Alignment explanation
Indices: 30430723--30430897 Score: 280
Period size: 52 Copynumber: 3.4 Consensus size: 52
30430713 GGGAAATTTC
* * *
30430723 TCACTTAGCACCA-TGCCATGGACTTGTTTCACTTAGGTGCCATGGACTTATT
1 TCACTTAGCA-CATTGCCATGGACTTATTTCACTTAGATGCCATGGTCTTATT
30430775 TCACTTAGCACATTGCCATGGACTTATTTCACTTAGATGCCATGGTCTTATT
1 TCACTTAGCACATTGCCATGGACTTATTTCACTTAGATGCCATGGTCTTATT
*
30430827 TCACTTAGCACATTGCCATGGACTTATTTCACTTAGATGTCATGGTCTTATT
1 TCACTTAGCACATTGCCATGGACTTATTTCACTTAGATGCCATGGTCTTATT
* *
30430879 TCACTTAACACAATGCCAT
1 TCACTTAGCACATTGCCAT
30430898 ATCCTGGATA
Statistics
Matches: 116, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
51 2 0.02
52 114 0.98
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (52 bp):
TCACTTAGCACATTGCCATGGACTTATTTCACTTAGATGCCATGGTCTTATT
Found at i:30435298 original size:39 final size:40
Alignment explanation
Indices: 30435197--30435381 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
30435187 TCGAATGATG
* * *
30435197 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
30435236 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
30435277 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGGTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
30435316 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * * *
30435355 AACCAGGCTATGTCCCGAAAGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
30435382 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 35 0.29
40 77 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:30435333 original size:79 final size:80
Alignment explanation
Indices: 30435197--30435353 Score: 212
Period size: 79 Copynumber: 2.0 Consensus size: 80
30435187 TCGAATGATG
* * *
30435197 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTGGTGCGAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
30435262 GTGCGAGTTACTAAT
66 GTGCGAGTTACTAAT
* * **
30435277 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGGT-ACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTGGTGCGAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
30435339 TTGTGCGAGTTACTA
64 TTGTGCGAGTTACTA
30435354 TAACCAGGCT
Statistics
Matches: 68, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
78 1 0.01
79 47 0.69
80 20 0.29
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTGGTGCGAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAT
Found at i:30435403 original size:79 final size:79
Alignment explanation
Indices: 30435250--30435414 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
30435240 GGACTAAGAT
* * * **
30435250 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGGTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCAGGCTAAGCCCGAAAGCATTGGAACGAGGTACTAA
*
30435315 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
30435329 CCGAAGGCATTTGTGCGAGTTACT-ATAACCAGGCTATGTCCCGAAAGCATTTGAACGA-GTAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCAGGCTAAG-CCCGAAAGCATTGGAACGAGGTA-C
* *
30435392 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
30435408 CCGAAGG
1 CCGAAGG
30435415 TACGCGATTC
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.67
80 22 0.30
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCAGGCTAAGCCCGAAAGCATTGGAACGAGGTACTAA
ATCCGGGTTAAATC
Found at i:30443477 original size:40 final size:39
Alignment explanation
Indices: 30443287--30443470 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 39
30443277 CGAATGATGT
* * *
30443287 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGA-TCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACT-A-AA
* *
30443327 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
* *
30443367 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGGTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
30443405 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
30443446 CCGGGCTATGTCCCGAAAGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
30443471 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 13, Indels: 16
0.81 0.09 0.11
Matches are distributed among these distances:
39 34 0.28
40 78 0.63
41 11 0.09
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:30443492 original size:79 final size:79
Alignment explanation
Indices: 30443339--30443503 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
30443329 GGACTAAGAT
* * **
30443339 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGGTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAAGCATTGGAACGAGGTACTAA
*
30443404 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
30443418 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAAGCATTTGAACGA-GTAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAAGCATTGGAACGAGGTA-C
* *
30443481 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
30443497 CCGAAGG
1 CCGAAGG
30443504 TATGCGATTC
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 50 0.68
80 22 0.30
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAAGCATTGGAACGAGGTACTAA
ATCCGGGTTAAATC
Found at i:30448011 original size:20 final size:21
Alignment explanation
Indices: 30447972--30448012 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
30447962 ACTTGTATAA
*
30447972 CTATCATCAAACCTTCAAAAT
1 CTATCATCAAACCATCAAAAT
*
30447993 CTATCAT-AAATCATCAAAAT
1 CTATCATCAAACCATCAAAAT
30448013 ACATTCTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.29
Consensus pattern (21 bp):
CTATCATCAAACCATCAAAAT
Found at i:30453313 original size:48 final size:48
Alignment explanation
Indices: 30453256--30453579 Score: 235
Period size: 48 Copynumber: 6.7 Consensus size: 48
30453246 TGGGAGCCAA
* * *
30453256 TGTAAGACCATGTTTGGAACACGGCATCGGTATTGTTATGAGAGCTAG
1 TGTAAGACCATGTTTGGAACATGGCATCGGCATTGATATGAGAGCTAG
* * * ** *
30453304 TGTAAGACCATGTCTAGG-ACATGGCAACGGCCTCAATAT-ACGAGCCAG
1 TGTAAGACCATGT-TTGGAACATGGCATCGGCATTGATATGA-GAGCTAG
* * ** **
30453352 TGAAAGACCATGTTTGGAGCATGGCATCAACATTGCCATGAGAGCTAG
1 TGTAAGACCATGTTTGGAACATGGCATCGGCATTGATATGAGAGCTAG
* * * * * ** * *
30453400 TGTAATACCATGTTTGGGACATGGCAACGACCTCAATATGGGAGCCAG
1 TGTAAGACCATGTTTGGAACATGGCATCGGCATTGATATGAGAGCTAG
* *
30453448 TGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTAT-ATGTG-TCAG
1 TGTAAGACCATGTTTGGAACATGGCATCGGCATTGATATGA-GAGCT-AG
* * ** * * *
30453496 TGTAAGACCATGTCTGGGACATGGCATCGGCACCGATGTATGAAAGCCAA
1 TGTAAGACCATGTTTGGAACATGGCATCGGCATTGA--TATGAGAGCTAG
* *
30453546 TGTAAGACCATGTTCAGG-ACATGGCATCGACATT
1 TGTAAGACCATGTT-TGGAACATGGCATCGGCATT
30453580 TTACCCTTTT
Statistics
Matches: 206, Mismatches: 59, Indels: 20
0.72 0.21 0.07
Matches are distributed among these distances:
47 4 0.02
48 164 0.80
49 4 0.02
50 31 0.15
51 3 0.01
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (48 bp):
TGTAAGACCATGTTTGGAACATGGCATCGGCATTGATATGAGAGCTAG
Found at i:30453420 original size:96 final size:96
Alignment explanation
Indices: 30453249--30453521 Score: 325
Period size: 96 Copynumber: 2.8 Consensus size: 96
30453239 GGTTATGTGG
* * *** **
30453249 GAGCCAATGTAAGACCATGTTTGGAACACGGCATCGGTATTGTTATGAGAGCTAGTGTAAGACCA
1 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAACATTGCCATGAGAGCTAGTGTAAGACCA
*
30453314 TGTCTAGGACATGGCAACGGCCTCAATATAC
66 TGTCTAGGACATGGCAACGACCTCAATATAC
* * *
30453345 GAGCCAGTGAAAGACCATGTTTGGAGCATGGCATCAACATTGCCATGAGAGCTAGTGTAATACCA
1 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAACATTGCCATGAGAGCTAGTGTAAGACCA
* * **
30453410 TGTTTGGGACATGGCAACGACCTCAATATGG
66 TGTCTAGGACATGGCAACGACCTCAATATAC
** ** *
30453441 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTAT-ATGTG-TCAGTGTAAGAC
1 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAACATTGCCATGA-GAGCT-AGTGTAAGAC
*
30453504 CATGTCTGGGACATGGCA
64 CATGTCTAGGACATGGCA
30453522 TCGGCACCGA
Statistics
Matches: 151, Mismatches: 24, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
95 2 0.01
96 149 0.99
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (96 bp):
GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAACATTGCCATGAGAGCTAGTGTAAGACCA
TGTCTAGGACATGGCAACGACCTCAATATAC
Found at i:30456259 original size:39 final size:39
Alignment explanation
Indices: 30456159--30456342 Score: 237
Period size: 40 Copynumber: 4.6 Consensus size: 39
30456149 TTGAATGATG
* * * *
30456159 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
*
30456199 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
30456239 TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
30456278 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
30456319 -CCGGGCTATGTCCGAAGGCATTTG
1 TCCGGGCTAAGTCCGAAGGCATTTG
30456343 AACGAGTAGC
Statistics
Matches: 131, Mismatches: 9, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
39 53 0.40
40 68 0.52
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:30456296 original size:79 final size:81
Alignment explanation
Indices: 30456159--30456342 Score: 243
Period size: 79 Copynumber: 2.3 Consensus size: 81
30456149 TTGAATGATG
*
30456159 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
30456223 TGTGCGAGTTACTA-AA
65 TGTGCGAGTTACTATAA
* * * * **
30456239 TCCGGGTTAAGTCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATT
30456302 TGTGCGAGTTACTATAA
65 TGTGCGAGTTACTATAA
*
30456319 -CCGGGCTATGTCCGAAGGCATTTG
1 TCCGGGCTAAGTCCGAAGGCATTTG
30456343 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 7
0.85 0.08 0.06
Matches are distributed among these distances:
78 1 0.01
79 71 0.77
80 20 0.22
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (81 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTATAA
Found at i:30456349 original size:79 final size:78
Alignment explanation
Indices: 30456212--30456375 Score: 224
Period size: 79 Copynumber: 2.1 Consensus size: 78
30456202 GGACTAAGAT
* **
30456212 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTA-CTA
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCGAAGGCATTTGAACGAG-TAGCTA
*
30456276 AATCCGGGTTAAGTC
65 AATCC-GGTTAAATC
*
30456291 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCGAAGGCATTTGAACGAGTAGCTA
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCGAAGGCATTTGAACGAGTAGCTA
* *
30456355 TATCCGGTTAAATT
65 AATCCGGTTAAATC
30456369 CCGAAGG
1 CCGAAGG
30456376 TACGTGATTT
Statistics
Matches: 76, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
78 16 0.21
79 58 0.76
80 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCGAAGGCATTTGAACGAGTAGCTAA
ATCCGGTTAAATC
Found at i:30456372 original size:39 final size:39
Alignment explanation
Indices: 30456211--30456375 Score: 203
Period size: 39 Copynumber: 4.2 Consensus size: 39
30456201 CGGACTAAGA
*
30456211 TCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG
1 TCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAT
30456250 TCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGT
1 TCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAA-T
* *
30456290 CCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCT-AT
1 TCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGTTAAT
** *
30456328 GTCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAAT
1 -TCCGAAGGCATTTGTGCGAGTTA-CTAAATCCGGGTT-AAT
30456368 TCCGAAGG
1 TCCGAAGG
30456376 TACGTGATTT
Statistics
Matches: 111, Mismatches: 8, Indels: 14
0.83 0.06 0.11
Matches are distributed among these distances:
38 7 0.06
39 69 0.62
40 33 0.30
41 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.27
Consensus pattern (39 bp):
TCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAT
Found at i:30464098 original size:40 final size:40
Alignment explanation
Indices: 30464040--30464217 Score: 245
Period size: 40 Copynumber: 4.5 Consensus size: 40
30464030 TGGATGATAA
** * *
30464040 CCGGGCTAAGTCCCGAAGGCATTTACGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
30464080 CCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
30464120 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
30464160 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
30464200 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
30464218 TACTTGGCTT
Statistics
Matches: 127, Mismatches: 9, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
39 17 0.13
40 110 0.87
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:30472152 original size:40 final size:40
Alignment explanation
Indices: 30472058--30472242 Score: 232
Period size: 40 Copynumber: 4.6 Consensus size: 40
30472048 TATTCGAATG
*
30472058 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * *
30472099 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* *
30472139 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
*
30472179 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
*
30472219 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
30472243 CTTGTGCAAG
Statistics
Matches: 124, Mismatches: 15, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
39 1 0.01
40 93 0.75
41 29 0.23
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:30472226 original size:80 final size:81
Alignment explanation
Indices: 30472058--30472242 Score: 259
Period size: 80 Copynumber: 2.3 Consensus size: 81
30472048 TATTCGAATG
* * *
30472058 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
*
30472123 ATTCGTGCGAGTTGCT
66 ATTCATGCGAGTTGCT
* *
30472139 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
* *
30472202 CATTTATGCTAG-TGACT
65 CATTCATGCGAGTTG-CT
30472219 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
30472243 CTTGTGCAAG
Statistics
Matches: 94, Mismatches: 8, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
79 3 0.03
80 59 0.63
81 32 0.34
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (81 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCT
Found at i:30479087 original size:19 final size:19
Alignment explanation
Indices: 30479063--30479101 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
30479053 GCTATAAAAC
*
30479063 TTAGTAAGCTCGTATGAAA
1 TTAGTAAGCTCATATGAAA
30479082 TTAGTAAGCTCATATGAAA
1 TTAGTAAGCTCATATGAAA
30479101 T
1 T
30479102 AATAATCAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.10, G:0.18, T:0.33
Consensus pattern (19 bp):
TTAGTAAGCTCATATGAAA
Found at i:30484030 original size:43 final size:43
Alignment explanation
Indices: 30483969--30484075 Score: 119
Period size: 43 Copynumber: 2.5 Consensus size: 43
30483959 TCGATGTTAC
* * *
30483969 TGTCCCAGACAG-GGTCTTACACGAAATC-GATTAACGATACCAA
1 TGTCCCAGAC-GTGGTCTTACACGAAATCTCAAT-ACAATACCAA
* * *
30484012 TGTCCCAGACGTGGTCTTACATGTAATCTCAATACAATGCCAA
1 TGTCCCAGACGTGGTCTTACACGAAATCTCAATACAATACCAA
*
30484055 TGTCCCAGACATGGTCTTACA
1 TGTCCCAGACGTGGTCTTACA
30484076 TGTAATCACA
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
42 1 0.02
43 52 0.95
44 2 0.04
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (43 bp):
TGTCCCAGACGTGGTCTTACACGAAATCTCAATACAATACCAA
Found at i:30487487 original size:40 final size:40
Alignment explanation
Indices: 30487440--30487616 Score: 221
Period size: 40 Copynumber: 4.4 Consensus size: 40
30487430 TGATATCCAA
*
30487440 GCTAAGTCCCGAAGGCATTTGTGCGAGTTCCTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
* *
30487480 GCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
* *
30487520 GCAAAGTCCCGAAGGCATTTGTGCGAGTAGTTTCTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGC--G-AGTTACTATATCCGG
* * * *
30487563 ACTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT-CTG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
* *
30487602 GCTAAATCCCAAAGG
1 GCTAAGTCCCGAAGG
30487617 TACTTGGGTT
Statistics
Matches: 118, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
39 13 0.11
40 70 0.59
41 1 0.01
43 34 0.29
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
Found at i:30487585 original size:83 final size:80
Alignment explanation
Indices: 30487443--30487599 Score: 235
Period size: 83 Copynumber: 1.9 Consensus size: 80
30487433 TATCCAAGCT
* * *
30487443 AAGTCCCGAAGGCATTTGTGCGAGTTCCTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-
1 AAGTCCCGAAGGCATTTGTGCGAGTTCCTATATCCGGACTAAGACCCGAAGGCATTTGTGCGAGT
30487507 TGACTATATCCGGGCA
66 TG-CTATATCCGGGCA
*
30487523 AAGTCCCGAAGGCATTTGTGCGAGTAGTTTCTATATCCGGACTAAGACCCGAAGGCATTTGTGCG
1 AAGTCCCGAAGGCATTTGTGC--G-AGTTCCTATATCCGGACTAAGACCCGAAGGCATTTGTGCG
30487588 AGTTGCTATATC
63 AGTTGCTATATC
30487600 TGGCTAAATC
Statistics
Matches: 69, Mismatches: 4, Indels: 5
0.88 0.05 0.06
Matches are distributed among these distances:
80 21 0.30
82 1 0.01
83 45 0.65
84 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (80 bp):
AAGTCCCGAAGGCATTTGTGCGAGTTCCTATATCCGGACTAAGACCCGAAGGCATTTGTGCGAGT
TGCTATATCCGGGCA
Found at i:30492959 original size:40 final size:40
Alignment explanation
Indices: 30492904--30493134 Score: 284
Period size: 40 Copynumber: 5.7 Consensus size: 40
30492894 TATTTGAATG
*
30492904 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTCCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
30492944 ATATCCGGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
30492984 ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
30493027 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* ** *
30493067 ATATCCGGGCTAAGACCCGAAGGCATTTGTGTGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
30493107 ATATCC-GGCTAAATCCCAAAGGTATTTG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTG
30493135 GGTTTGGAAG
Statistics
Matches: 164, Mismatches: 24, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 18 0.11
40 111 0.68
43 35 0.21
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:30493057 original size:83 final size:82
Alignment explanation
Indices: 30492904--30493134 Score: 337
Period size: 83 Copynumber: 2.9 Consensus size: 82
30492894 TATTTGAATG
* *
30492904 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A-AGTTCCTATATCCGGGCTAAGTCCTGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGAGTTGCTATATCCGGGCTAAGTCCCGAAGG
30492967 CATTTGTGCTAGTGACT
66 CATTTGTGCTAGTGACT
* *
30492984 ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-AGTTGCTATATCCGGGCTAAGTCCCGAAG
30493049 GCATTTGTGCTAGTGACT
65 GCATTTGTGCTAGTGACT
* * * *
30493067 ATATCCGGGCTAAGACCCGAAGGCATTTGT--GTGAGTTGCTATATCC-GGCTAAATCCCAAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGAGTTGCTATATCCGGGCTAAGTCCCGAAGG
*
30493129 TATTTG
66 CATTTG
30493135 GGTTTGGAAG
Statistics
Matches: 137, Mismatches: 11, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
79 19 0.14
80 43 0.31
81 3 0.02
83 72 0.53
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (82 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGAGTTGCTATATCCGGGCTAAGTCCCGAAGG
CATTTGTGCTAGTGACT
Found at i:30499174 original size:46 final size:47
Alignment explanation
Indices: 30499052--30499174 Score: 146
Period size: 46 Copynumber: 2.7 Consensus size: 47
30499042 TTATGAGAGC
**
30499052 CAGTGTAAGACCATGTCTGGGACATGGCATTGGCATTGAGACGAGTG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACGAGTG
* *
30499099 CTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGC-TATGAGATGTGT-
1 C-AGTGTAAGACCATGTCTGGGACATGGCATCAGCAT-TGAGACGAGTG
* *
30499144 CAGTGTAAGACCACGTATGGGACATGGCATC
1 CAGTGTAAGACCATGTCTGGGACATGGCATC
30499175 GGCACATATA
Statistics
Matches: 66, Mismatches: 6, Indels: 9
0.81 0.07 0.11
Matches are distributed among these distances:
44 9 0.14
45 14 0.21
46 19 0.29
47 15 0.23
48 9 0.14
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (47 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACGAGTG
Found at i:30514266 original size:46 final size:46
Alignment explanation
Indices: 30514121--30514292 Score: 152
Period size: 46 Copynumber: 3.7 Consensus size: 46
30514111 TCACTTGTGT
* * * * * *
30514121 GAGCTAGTGTAAGACATGTTTGAGACATGCATCAGCCAC-ATTATGA
1 GAGCTAGTGTAAGACATGTCTGGGACAGGCATCAGCCTCGA-GACGA
* * * *
30514167 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAG-CGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACA-GGCATCAGCCTCGAGACGA
*
30514214 GTGCTAGTGTAAGACATGTCTGGGACAGGCATCAGCCTCGAGACGTA
1 GAGCTAGTGTAAGACATGTCTGGGACAGGCATCAGCCTCGAGACG-A
* * * *
30514261 -AGCTAGTGTAATATATGCCTGGGACATGCATC
1 GAGCTAGTGTAAGACATGTCTGGGACAGGCATC
30514293 GGCTACGTAA
Statistics
Matches: 101, Mismatches: 20, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
45 12 0.12
46 55 0.54
47 26 0.26
48 7 0.07
49 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
GAGCTAGTGTAAGACATGTCTGGGACAGGCATCAGCCTCGAGACGA
Found at i:30515534 original size:20 final size:21
Alignment explanation
Indices: 30515496--30515534 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
30515486 CTGAAATGGC
*
30515496 CACACGGGCGTGTTGCCCTTG
1 CACACGGACGTGTTGCCCTTG
30515517 CACACGGACGTG-TGCCCT
1 CACACGGACGTGTTGCCCT
30515535 GTCTCAAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.13, C:0.36, G:0.31, T:0.21
Consensus pattern (21 bp):
CACACGGACGTGTTGCCCTTG
Found at i:30564099 original size:27 final size:27
Alignment explanation
Indices: 30564069--30564131 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
30564059 TTTATTCAGT
30564069 AAACCAACTGGCAAACAACAACTTGCC
1 AAACCAACTGGCAAACAACAACTTGCC
* * ** * *
30564096 AAACCAATTGGCGAACTGCAGCTTTCC
1 AAACCAACTGGCAAACAACAACTTGCC
30564123 AAACCAACT
1 AAACCAACT
30564132 AGTGAACCAC
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.40, C:0.32, G:0.13, T:0.16
Consensus pattern (27 bp):
AAACCAACTGGCAAACAACAACTTGCC
Found at i:30570642 original size:32 final size:35
Alignment explanation
Indices: 30570589--30570667 Score: 101
Period size: 33 Copynumber: 2.3 Consensus size: 35
30570579 GCTTAAGCCC
*
30570589 ATTCAGATAACATTGATACTGGGCCAGAG-CCCTT
1 ATTCAGATAACATTGAAACTGGGCCAGAGCCCCTT
* **
30570623 -TTCAGATTACATT-AAACTGGGCCTTAGCCCCTT
1 ATTCAGATAACATTGAAACTGGGCCAGAGCCCCTT
30570656 ATTCAGATAACA
1 ATTCAGATAACA
30570668 GTATGGCCCA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
32 11 0.29
33 17 0.45
34 10 0.26
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.29
Consensus pattern (35 bp):
ATTCAGATAACATTGAAACTGGGCCAGAGCCCCTT
Found at i:30571939 original size:24 final size:24
Alignment explanation
Indices: 30571905--30572004 Score: 132
Period size: 24 Copynumber: 4.2 Consensus size: 24
30571895 CCAACTCCTG
* *
30571905 CTCCTTGATCAGCTCCGAAATCTT
1 CTCCTTTATCAGCTCCTAAATCTT
*
30571929 CTCCTTTATCAGCTCCTAAATCCT
1 CTCCTTTATCAGCTCCTAAATCTT
*
30571953 CTCCCTTATCAGCTCCTAAA-CTCT
1 CTCCTTTATCAGCTCCTAAATCT-T
*
30571977 CTCCCTTATCAGCT-CTAAATCTT
1 CTCCTTTATCAGCTCCTAAATCTT
30572000 CTCCT
1 CTCCT
30572005 GACAACCTTT
Statistics
Matches: 68, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
23 11 0.16
24 57 0.84
ACGTcount: A:0.20, C:0.38, G:0.06, T:0.36
Consensus pattern (24 bp):
CTCCTTTATCAGCTCCTAAATCTT
Found at i:30578559 original size:26 final size:26
Alignment explanation
Indices: 30578530--30578582 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30578520 TCTAACATGC
30578530 ATTTAGGTCAATTTA-CTCCTAGGGGT
1 ATTTAGGT-AATTTATCTCCTAGGGGT
* *
30578556 ATTTCGGTACTTTATCTCCTAGGGGT
1 ATTTAGGTAATTTATCTCCTAGGGGT
30578582 A
1 A
30578583 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.21, C:0.17, G:0.23, T:0.40
Consensus pattern (26 bp):
ATTTAGGTAATTTATCTCCTAGGGGT
Found at i:30579870 original size:24 final size:24
Alignment explanation
Indices: 30579838--30579911 Score: 105
Period size: 24 Copynumber: 3.0 Consensus size: 24
30579828 AACTCCTGCT
30579838 CCTTGATCAGCTCCTAAATCCTCTC
1 CCTT-ATCAGCTCCTAAATCCTCTC
30579863 CCTTATCAGCTCCTAAA-CTCTCTC
1 CCTTATCAGCTCCTAAATC-CTCTC
* *
30579887 CCTTATCAACTCCTAAATCTTCTC
1 CCTTATCAGCTCCTAAATCCTCTC
30579911 C
1 C
30579912 TGACAGCCTT
Statistics
Matches: 45, Mismatches: 2, Indels: 5
0.87 0.04 0.10
Matches are distributed among these distances:
23 1 0.02
24 39 0.87
25 5 0.11
ACGTcount: A:0.22, C:0.41, G:0.04, T:0.34
Consensus pattern (24 bp):
CCTTATCAGCTCCTAAATCCTCTC
Found at i:30586076 original size:27 final size:28
Alignment explanation
Indices: 30585992--30586089 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
30585982 CATGAGATTG
* * * *
30585992 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
30586021 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
30586049 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
30586076 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
30586090 GACTTAAATA
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:30589947 original size:28 final size:28
Alignment explanation
Indices: 30589914--30589970 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
30589904 TTCCCTTATG
30589914 CTTCTTCTGTTAGCCGAAACCTTCTGAT
1 CTTCTTCTGTTAGCCGAAACCTTCTGAT
30589942 CTTCTTCTGTTAGCCGAAACCTTCTGAT
1 CTTCTTCTGTTAGCCGAAACCTTCTGAT
30589970 C
1 C
30589971 ACCCTACTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.18, C:0.30, G:0.14, T:0.39
Consensus pattern (28 bp):
CTTCTTCTGTTAGCCGAAACCTTCTGAT
Found at i:30595677 original size:47 final size:47
Alignment explanation
Indices: 30595603--30595761 Score: 237
Period size: 47 Copynumber: 3.4 Consensus size: 47
30595593 GGTGTACAAG
* *
30595603 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGGATGTGAAA
* * * *
30595650 GTGGATATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAG
1 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGGATGTGAAA
* *
30595697 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGGATGTGAAA
*
30595744 GTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
30595762 TCCCGAAGGG
Statistics
Matches: 99, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 99 1.00
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.28
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGGATGTGAAA
Found at i:30597883 original size:40 final size:40
Alignment explanation
Indices: 30597440--30597871 Score: 666
Period size: 40 Copynumber: 10.8 Consensus size: 40
30597430 GAGAATTGAG
30597440 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
30597480 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
30597520 AGTGATATATCCAGGCTAAGTCCCGAAGACCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
30597560 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
30597600 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
30597640 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
30597680 AGTGATATATCCAGGCTAAGTCCCGAAGAGCATTCGTGCC
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
30597720 AGTGATGTATCCGAACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
30597760 AGTGATGTATCCGGGCTAAGTTCCAAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* ** *
30597800 AGTGATATATCCGTGCTAAACCCCGAAGAGTATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
30597840 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
30597872 ATCATGCTGG
Statistics
Matches: 355, Mismatches: 37, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 355 1.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:30601677 original size:47 final size:47
Alignment explanation
Indices: 30601607--30601765 Score: 246
Period size: 47 Copynumber: 3.4 Consensus size: 47
30601597 GGTGTACAAG
* *
30601607 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGGATGTGAAA
* * *
30601654 GTGTATATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAG
1 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGGATGTGAAA
* *
30601701 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGGATGTGAAA
*
30601748 GTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
30601766 TCCCGAAGGA
Statistics
Matches: 101, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 101 1.00
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGGATGTGAAA
Found at i:30608662 original size:38 final size:37
Alignment explanation
Indices: 30608578--30608713 Score: 173
Period size: 38 Copynumber: 3.5 Consensus size: 37
30608568 GAATCCAGTC
* *
30608578 ACCAGCACAAAACCTGCGGGACTTTAAGCTCGAATATAAT
1 ACCAGCACAAAGCCTGCGGGA-TTTAA-CCCG-ATATAAT
*
30608618 ACCAGCACTAAGCCTGCGGGATTTAACCCAGATATAAT
1 ACCAGCACAAAGCCTGCGGGATTTAACCC-GATATAAT
*
30608656 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACAAAGCCTGCGGGATTTAACCC-GATATAAT
* *
30608694 ACCAGCACATAGCCTACGGG
1 ACCAGCACAAAGCCTGCGGG
30608714 TCTTTAAGCC
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
38 62 0.71
39 6 0.07
40 19 0.22
ACGTcount: A:0.34, C:0.27, G:0.21, T:0.18
Consensus pattern (37 bp):
ACCAGCACAAAGCCTGCGGGATTTAACCCGATATAAT
Found at i:30621152 original size:27 final size:28
Alignment explanation
Indices: 30621068--30621165 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
30621058 CATGAGATTG
* * * *
30621068 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
30621097 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
30621125 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
30621152 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
30621166 GACTGAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:30621176 original size:27 final size:27
Alignment explanation
Indices: 30621068--30621178 Score: 107
Period size: 27 Copynumber: 4.0 Consensus size: 27
30621058 CATGAGATTG
* * * *
30621068 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GGATT-GATTATATA
*
30621097 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCG-GATTGATTATATA
30621125 GCACTAAGTGTGC-GAGTTGATTATATA
1 GCACTAAGTGTGCGGA-TTGATTATATA
* * *
30621152 GCACTGAGTGTGCGGACTGAATATATA
1 GCACTAAGTGTGCGGATTGATTATATA
30621179 TTTTTGAATC
Statistics
Matches: 72, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
26 1 0.01
27 32 0.44
28 22 0.31
29 17 0.24
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.32
Consensus pattern (27 bp):
GCACTAAGTGTGCGGATTGATTATATA
Done.