Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 92 of 343
Found at i:30623292 original size:20 final size:20
Alignment explanation
Indices: 30623267--30623332 Score: 55
Period size: 20 Copynumber: 3.3 Consensus size: 20
30623257 CCAAGTGAAC
30623267 TCGGACTCAACTCAACGAGT
1 TCGGACTCAACTCAACGAGT
** * **
30623287 TCGGA--CATTTGCATCTGAAC
1 TCGGACTCAACT-CAAC-GAGT
30623307 TCGGACTCAACTCAACGAGT
1 TCGGACTCAACTCAACGAGT
30623327 TCGGAC
1 TCGGAC
30623333 ATTGCATCCA
Statistics
Matches: 32, Mismatches: 10, Indels: 8
0.64 0.20 0.16
Matches are distributed among these distances:
18 3 0.09
19 3 0.09
20 20 0.62
21 3 0.09
22 3 0.09
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (20 bp):
TCGGACTCAACTCAACGAGT
Found at i:30623351 original size:45 final size:43
Alignment explanation
Indices: 30623215--30623376 Score: 233
Period size: 44 Copynumber: 3.8 Consensus size: 43
30623205 ACCCGCCCAT
* * *
30623215 AAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCC
1 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATT-GCATCC
30623259 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT-C
1 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACA-TTGCATCC
30623302 ---TGAACTCGGACTCAACTCAACGAGTTCGGACATTGCATCC
1 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTGCATCC
30623342 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 --AAGTGAACTCGGACTCAACTCAACGAGTTCGGA
30623377 TGCCAACCAT
Statistics
Matches: 108, Mismatches: 3, Indels: 13
0.87 0.02 0.10
Matches are distributed among these distances:
39 6 0.06
40 33 0.31
43 1 0.01
44 36 0.33
45 32 0.30
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (43 bp):
AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTGCATCC
Found at i:30623367 original size:85 final size:84
Alignment explanation
Indices: 30623218--30623376 Score: 266
Period size: 85 Copynumber: 1.9 Consensus size: 84
30623208 CGCCCATAAG
* *
30623218 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCAAGTGAACTCGGACTCAACTCAAC
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCAAGTGAACTCGGACTCAACTCAAC
30623283 GAGTTCGGACATTTGCATC
66 GAGTTCGGACATTTGCATC
*
30623302 TGAACTCGGACTCAACTCAACGAGTTCGGACATT-GCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCC--AAGTGAACTCGGACTCAACTCA
30623366 ACGAGTTCGGA
64 ACGAGTTCGGA
30623377 TGCCAACCAT
Statistics
Matches: 70, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
83 6 0.09
84 31 0.44
85 33 0.47
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.21
Consensus pattern (84 bp):
TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGACATTTGCATC
Found at i:30625785 original size:15 final size:15
Alignment explanation
Indices: 30625756--30625805 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
30625746 CAAAGATAAC
*
30625756 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
30625770 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
30625785 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
30625800 AAGAAA
1 AAGAAA
30625806 CCCAAGATAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.60, C:0.12, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:30625814 original size:15 final size:15
Alignment explanation
Indices: 30625767--30625814 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
30625757 AGAAAACCGA
30625767 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
30625781 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
30625797 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
30625812 ATA
1 ATA
30625815 CGATACTATG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 26 0.96
16 1 0.04
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:30628799 original size:46 final size:47
Alignment explanation
Indices: 30628724--30628854 Score: 201
Period size: 48 Copynumber: 2.8 Consensus size: 47
30628714 TGTAACCCGC
* * * *
30628724 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC-GCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCTGCAT
*
30628770 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTC-TGCAT
30628818 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
30628855 TGCCAACATC
Statistics
Matches: 77, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
46 37 0.48
48 40 0.52
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (47 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCTGCAT
Found at i:30636721 original size:91 final size:91
Alignment explanation
Indices: 30636556--30636721 Score: 198
Period size: 91 Copynumber: 1.8 Consensus size: 91
30636546 CTGACAATCT
*
30636556 GTATAAGGCTTTTCAGCCTTTCTCCGATACTTATGCTTAATGCCATTCTGTTTAACTGGCAGCTT
1 GTATAAGGCTTTTCAGCCTTTCTCCAATACTTATGCTTAATGCCATTCTGTTTAACTGGCAGCTT
*
30636621 GCTGCATATTACGGCCTGTAGCCTCC
66 GCTACATATTACGGCCTGTAGCCTCC
** * *
30636647 GTATAAGGCTATTT-AGCCTTT-TGTAATACTTATGGCTT-ATAGCCGTTCTG-TTAACT-GTAG
1 GTATAAGGCT-TTTCAGCCTTTCTCCAATACTTAT-GCTTAAT-GCCATTCTGTTTAACTGGCAG
30636707 CGTTGCTACGATATT
63 C-TTGCTAC-ATATT
30636722 TATGGCCTTT
Statistics
Matches: 64, Mismatches: 6, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
89 4 0.06
90 23 0.36
91 34 0.53
92 3 0.05
ACGTcount: A:0.20, C:0.22, G:0.19, T:0.39
Consensus pattern (91 bp):
GTATAAGGCTTTTCAGCCTTTCTCCAATACTTATGCTTAATGCCATTCTGTTTAACTGGCAGCTT
GCTACATATTACGGCCTGTAGCCTCC
Found at i:30636919 original size:26 final size:26
Alignment explanation
Indices: 30636889--30636939 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
30636879 ATCTGATTTA
*
30636889 CTGATTCTG-TACTGGCTTAGGCCCAC
1 CTGATTCTGTTAATGGC-TAGGCCCAC
30636915 CTGATTCTGTTAATGGCTAGGCCCA
1 CTGATTCTGTTAATGGCTAGGCCCA
30636940 ACTATTACTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 17 0.74
27 6 0.26
ACGTcount: A:0.18, C:0.27, G:0.24, T:0.31
Consensus pattern (26 bp):
CTGATTCTGTTAATGGCTAGGCCCAC
Found at i:30639362 original size:39 final size:39
Alignment explanation
Indices: 30639318--30639556 Score: 317
Period size: 39 Copynumber: 6.0 Consensus size: 39
30639308 ATTATATTAT
* *
30639318 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
30639357 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
30639396 CAGCACGAAGCCT--GGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
30639433 CAGCACGAAGCCTGCGGGACTTTAG-CCGGATACATTTCCATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGAT--A----C----ATTTC
30639481 CAGCACGAAGCCT--GGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
30639518 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
30639557 AGTGTCTTGC
Statistics
Matches: 181, Mismatches: 4, Indels: 30
0.84 0.02 0.14
Matches are distributed among these distances:
37 55 0.30
38 6 0.03
39 82 0.45
40 1 0.01
41 1 0.01
44 1 0.01
45 1 0.01
46 10 0.06
47 6 0.03
48 18 0.10
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:30639534 original size:85 final size:86
Alignment explanation
Indices: 30639391--30639556 Score: 316
Period size: 85 Copynumber: 1.9 Consensus size: 86
30639381 GCCCGGATAC
*
30639391 ATTTCCAGCACGAAGCCTGGGACTTTGGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTT
1 ATTTCCAGCACGAAGCCTGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTT
30639456 AG-CCGGATACATTTCCATAT
66 AGCCCGGATACATTTCCATAT
30639476 ATTTCCAGCACGAAGCCTGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTT
1 ATTTCCAGCACGAAGCCTGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTT
30639541 AGCCCGGATACATTTC
66 AGCCCGGATACATTTC
30639557 AGTGTCTTGC
Statistics
Matches: 79, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
85 66 0.84
86 13 0.16
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.24
Consensus pattern (86 bp):
ATTTCCAGCACGAAGCCTGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTT
AGCCCGGATACATTTCCATAT
Found at i:30645201 original size:39 final size:38
Alignment explanation
Indices: 30645157--30645395 Score: 293
Period size: 39 Copynumber: 6.0 Consensus size: 38
30645147 ATTATATTAT
*
30645157 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTT-ACCCGGATACATTTC
*
30645196 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTT-ACCCGGATACATTTC
*
30645235 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTT-ACCCGGATACATTTC
*
30645274 CAGCACGAAGCCTGCGGGACTTTAGCCGGATACATTTCCATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTACCCGGAT--A----C----ATTTC
30645322 CAGCACGAAGCCT--GGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTA-CCCGGATACATTTC
*
30645359 CAGCACGAAGCCTGCGGGACTTTAGCCGGATACATTT
1 CAGCACGAAGCCTGCGGGACTTTACCCGGATACATTT
30645396 TCAGTGTCTT
Statistics
Matches: 180, Mismatches: 7, Indels: 27
0.84 0.03 0.13
Matches are distributed among these distances:
37 18 0.10
38 18 0.10
39 107 0.59
40 1 0.01
41 1 0.01
44 1 0.01
45 1 0.01
46 9 0.05
47 6 0.03
48 18 0.10
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (38 bp):
CAGCACGAAGCCTGCGGGACTTTACCCGGATACATTTC
Found at i:30645286 original size:78 final size:77
Alignment explanation
Indices: 30645157--30645395 Score: 329
Period size: 78 Copynumber: 3.0 Consensus size: 77
30645147 ATTATATTAT
* * *
30645157 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAG-
30645222 CCGGATACATTTC
65 CCGGATACATTTC
*
30645235 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGC
30645300 CGGATACATTTCCATATATTTC
66 CGGAT--A----C----ATTTC
30645322 CAGCACGAAGCCT--GGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGC
30645385 CGGATACATTT
66 CGGATACATTT
30645396 TCAGTGTCTT
Statistics
Matches: 146, Mismatches: 5, Indels: 23
0.84 0.03 0.13
Matches are distributed among these distances:
75 4 0.03
77 6 0.04
78 60 0.41
79 2 0.01
83 2 0.01
85 54 0.37
87 18 0.12
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (77 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGC
CGGATACATTTC
Found at i:30645367 original size:37 final size:37
Alignment explanation
Indices: 30645317--30645395 Score: 133
Period size: 37 Copynumber: 2.1 Consensus size: 37
30645307 ATTTCCATAT
30645317 ATTTCCAGCACGAAGCCT-GGGACTTTAGCCCGGATAC
1 ATTTCCAGCACGAAGCCTCGGGACTTTAG-CCGGATAC
30645354 ATTTCCAGCACGAAGCCTGCGGGACTTTAGCCGGATAC
1 ATTTCCAGCACGAAGCCT-CGGGACTTTAGCCGGATAC
30645392 ATTT
1 ATTT
30645396 TCAGTGTCTT
Statistics
Matches: 40, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
37 18 0.45
38 12 0.30
39 10 0.25
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (37 bp):
ATTTCCAGCACGAAGCCTCGGGACTTTAGCCGGATAC
Found at i:30645375 original size:85 final size:86
Alignment explanation
Indices: 30645230--30645395 Score: 307
Period size: 85 Copynumber: 1.9 Consensus size: 86
30645220 GCCCGGATAC
*
30645230 ATTTCCAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACT
1 ATTTCCAGCACGAAGCCT-CGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACT
30645295 TTAGCCGGATACATTTCCATAT
65 TTAGCCGGATACATTTCCATAT
30645317 ATTTCCAGCACGAAGCCT-GGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTT
1 ATTTCCAGCACGAAGCCTCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTT
30645381 TAGCCGGATACATTT
66 TAGCCGGATACATTT
30645396 TCAGTGTCTT
Statistics
Matches: 78, Mismatches: 1, Indels: 2
0.96 0.01 0.02
Matches are distributed among these distances:
85 60 0.77
87 18 0.23
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (86 bp):
ATTTCCAGCACGAAGCCTCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTT
TAGCCGGATACATTTCCATAT
Found at i:30648915 original size:42 final size:41
Alignment explanation
Indices: 30648794--30648957 Score: 157
Period size: 42 Copynumber: 3.9 Consensus size: 41
30648784 TACTGTACCA
* *
30648794 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCGTATTG
1 ATGCCATATCCCAGATATGGTCTTACATG-AATCTCATATCG
* * * *
30648836 ATGCCAATAGCCTAGCTATGGTCTTACACGAAATCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACATG-AATCTCATATCG
* * * *
30648879 ATGCCATATCTCAAATATGGTCTTATATGAATTCTCATACCG
1 ATGCCATATCCCAGATATGGTCTTACATGAA-TCTCATATCG
* * * *
30648921 ATGGCATAACCCATATATGGTCTTACACGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACATG-AATCTCA
30648958 GTAACCCTAA
Statistics
Matches: 98, Mismatches: 21, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
41 2 0.02
42 59 0.60
43 37 0.38
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACATGAATCTCATATCG
Found at i:30649990 original size:13 final size:13
Alignment explanation
Indices: 30649972--30650017 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
30649962 CCAAACGTCA
30649972 AAATTTTTGAACG
1 AAATTTTTGAACG
*
30649985 AAATTTTCATG--CA
1 AAATTTT--TGAACG
30649998 AAATTTTTGAACG
1 AAATTTTTGAACG
30650011 AAATTTT
1 AAATTTT
30650018 CATGAAATCA
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
11 2 0.07
13 23 0.85
15 2 0.07
ACGTcount: A:0.39, C:0.09, G:0.11, T:0.41
Consensus pattern (13 bp):
AAATTTTTGAACG
Found at i:30649999 original size:26 final size:26
Alignment explanation
Indices: 30649970--30650021 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
30649960 GCCCAAACGT
30649970 CAAAATTTTTGAACGAAATTTTCATG
1 CAAAATTTTTGAACGAAATTTTCATG
30649996 CAAAATTTTTGAACGAAATTTTCATG
1 CAAAATTTTTGAACGAAATTTTCATG
30650022 AAATCATTCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (26 bp):
CAAAATTTTTGAACGAAATTTTCATG
Found at i:30656370 original size:71 final size:68
Alignment explanation
Indices: 30656284--30656478 Score: 252
Period size: 68 Copynumber: 2.8 Consensus size: 68
30656274 CGATTTATCT
* * * *
30656284 CGTAGCTCTCTTGTCTACATGGTG-TCCTTCACTTGGAATCACTA-ATGCGACCTAGGTACATTT
1 CGTAGCTCTCTTGTCTACATGG-GATACATC-C--CGAATCAC-ACATGCGACCTAGCTACATTT
30656347 ATCTCTCA
61 ATCTCTCA
* *
30656355 CGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACATGTGACCTAGCTACATTTATCTC
1 CGTAGCTCTCTTGTCTACATGGGATACATCCCGAATCACACATGCGACCTAGCTACATTTATCTC
30656420 TCA
66 TCA
*
30656423 CGTAGCTCTCTTGTCTACATGGGATACATCCC-ATATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGGATACATCCCGA-ATCACACATGCGACCTAGCTAC
30656479 TATATAGTAT
Statistics
Matches: 114, Mismatches: 7, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
67 1 0.01
68 85 0.75
70 2 0.02
71 26 0.23
ACGTcount: A:0.23, C:0.29, G:0.16, T:0.32
Consensus pattern (68 bp):
CGTAGCTCTCTTGTCTACATGGGATACATCCCGAATCACACATGCGACCTAGCTACATTTATCTC
TCA
Found at i:30656417 original size:68 final size:68
Alignment explanation
Indices: 30656332--30656478 Score: 276
Period size: 68 Copynumber: 2.2 Consensus size: 68
30656322 TCACTAATGC
* *
30656332 GACCTAGGTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACA
1 GACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCATATCACACA
30656397 TGT
66 TGT
30656400 GACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCATATCACACA
1 GACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCATATCACACA
30656465 TGT
66 TGT
30656468 GACCTAGCTAC
1 GACCTAGCTAC
30656479 TATATAGTAT
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 77 1.00
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.31
Consensus pattern (68 bp):
GACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCATATCACACA
TGT
Found at i:30656495 original size:68 final size:67
Alignment explanation
Indices: 30656332--30656496 Score: 233
Period size: 68 Copynumber: 2.4 Consensus size: 67
30656322 TCACTAATGC
* * * *
30656332 GACCTAGGTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACA
1 GACCTAGCTACATATATATCT-ACGTAGCTCTCTTGTCTACATGGGATACATCCCATATCACACA
30656397 TGT
65 TGT
* *
30656400 GACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCATATCACACA
1 GACCTAGCTACATATATATCT-ACGTAGCTCTCTTGTCTACATGGGATACATCCCATATCACACA
30656465 TGT
65 TGT
30656468 GACCTAGCTACTATATAGTATCT-CGTAGC
1 GACCTAGCTAC-ATATA-TATCTACGTAGC
30656497 CTTCTCGTAC
Statistics
Matches: 91, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
68 83 0.91
69 4 0.04
70 4 0.04
ACGTcount: A:0.25, C:0.28, G:0.15, T:0.32
Consensus pattern (67 bp):
GACCTAGCTACATATATATCTACGTAGCTCTCTTGTCTACATGGGATACATCCCATATCACACAT
GT
Found at i:30658860 original size:40 final size:40
Alignment explanation
Indices: 30658805--30658988 Score: 266
Period size: 40 Copynumber: 4.6 Consensus size: 40
30658795 CGGATGATAA
* *
30658805 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
30658845 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-T
*
30658885 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA-A
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
* *
30658924 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAGTTACTATAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATT
* *
30658965 -CGGGCTAAGCCCCGAAGGAATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
30658989 AGCAAGTAGC
Statistics
Matches: 133, Mismatches: 7, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
39 38 0.29
40 94 0.71
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
Found at i:30658957 original size:79 final size:81
Alignment explanation
Indices: 30658801--30658988 Score: 294
Period size: 79 Copynumber: 2.4 Consensus size: 81
30658791 TATTCGGATG
* *
30658801 ATAA-CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGC
1 ATAATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGTCCCGAAGGC
*
30658865 ATTTGTGCGAGTTACT
66 ATTTGTCCGAGTTACT
*
30658881 AT-ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA-ACCGGGCTAAGTCCCGAAGGC
1 ATAATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGTCCCGAAGGC
30658944 ATTTGTCCGAGTTACT
66 ATTTGTCCGAGTTACT
* *
30658960 ATAAT-CGGGCTAAGCCCCGAAGGAATTTG
1 ATAATCCGGGCTAAGTCCCGAAGGCATTTG
30658989 AGCAAGTAGC
Statistics
Matches: 100, Mismatches: 6, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
79 60 0.60
80 40 0.40
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
ATAATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGTCCCGAAGGC
ATTTGTCCGAGTTACT
Found at i:30659010 original size:79 final size:79
Alignment explanation
Indices: 30658801--30659021 Score: 279
Period size: 79 Copynumber: 2.8 Consensus size: 79
30658791 TATTCGGATG
* *
30658801 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGT-GACTAATTCCGGGCTAAGTCCCGAAGGC
1 ATAATCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAG-CTAA-TCCGGGCTAAGTCCCGAAGGC
*
30658865 ATTTGTGCGAGTTACT
64 ATTTGTCCGAGTTACT
* *
30658881 AT-ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAAACCGGGCTAAGTCCCGAAGGC
1 ATAAT-CGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TAGCTAATCCGGGCTAAGTCCCGAAGGC
30658944 ATTTGTCCGAGTTACT
64 ATTTGTCCGAGTTACT
* * * * *
30658960 ATAATCGGGCTAAGCCCCGAAGGAATTTGAGCAAGTAGCTATATCC-GGCTAAATTCCGAAGG
1 ATAATCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTA-ATCCGGGCTAAGTCCCGAAGG
30659022 TACTTGGTTT
Statistics
Matches: 124, Mismatches: 11, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
78 2 0.02
79 81 0.65
80 40 0.32
81 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
ATAATCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTAATCCGGGCTAAGTCCCGAAGGCAT
TTGTCCGAGTTACT
Found at i:30667212 original size:65 final size:65
Alignment explanation
Indices: 30667135--30667323 Score: 206
Period size: 68 Copynumber: 2.8 Consensus size: 65
30667125 CGATTTATCT
* * * *
30667135 CGTAGCTCTCTTGTCTACATGGTG-TCCTTCACTTGGAATCACTCA-TG-TAG-TACATTTATCT
1 CGTAGCTCTCTTGTCTACATGG-GATACATC-C--CGAATCACACAGTGCTAGCTACATTTATCT
30667196 CTCA
62 CTCA
*
30667200 CGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACATGTGACCTAGCTACATTTATCTC
1 CGTAGCTCTCTTGTCTACATGGGATACATCCCGAATCACACA-GTG--CTAGCTACATTTATCTC
30667265 TCA
63 TCA
*
30667268 CGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGGATACATCCCGAATCACACA-GTG--CTAGCTAC
30667324 TATATAGTAT
Statistics
Matches: 112, Mismatches: 5, Indels: 11
0.88 0.04 0.09
Matches are distributed among these distances:
62 8 0.07
64 4 0.04
65 26 0.23
67 3 0.03
68 71 0.63
ACGTcount: A:0.22, C:0.29, G:0.16, T:0.33
Consensus pattern (65 bp):
CGTAGCTCTCTTGTCTACATGGGATACATCCCGAATCACACAGTGCTAGCTACATTTATCTCTCA
Found at i:30667274 original size:68 final size:68
Alignment explanation
Indices: 30667185--30667323 Score: 278
Period size: 68 Copynumber: 2.0 Consensus size: 68
30667175 ACTCATGTAG
30667185 TACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACATGTGACCT
1 TACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACATGTGACCT
30667250 AGC
66 AGC
30667253 TACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACATGTGACCT
1 TACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACATGTGACCT
30667318 AGC
66 AGC
30667321 TAC
1 TAC
30667324 TATATAGTAT
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 71 1.00
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.32
Consensus pattern (68 bp):
TACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACATGTGACCT
AGC
Found at i:30667356 original size:68 final size:67
Alignment explanation
Indices: 30667185--30667349 Score: 235
Period size: 68 Copynumber: 2.4 Consensus size: 67
30667175 ACTCATGTAG
* *
30667185 TACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACATGTGACCT
1 TACATATATATCT-ACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACATGTGACCT
30667250 AGC
65 AGC
* *
30667253 TACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACATGTGACCT
1 TACATATATATCT-ACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACATGTGACCT
30667318 AGC
65 AGC
30667321 TACTATATAGTATCT-CGTAGC-CTTCTTGT
1 TAC-ATATA-TATCTACGTAGCTC-TCTTGT
30667350 ACACATGATG
Statistics
Matches: 92, Mismatches: 2, Indels: 6
0.92 0.02 0.06
Matches are distributed among these distances:
67 1 0.01
68 83 0.90
69 4 0.04
70 4 0.04
ACGTcount: A:0.23, C:0.28, G:0.15, T:0.35
Consensus pattern (67 bp):
TACATATATATCTACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACATGTGACCTA
GC
Found at i:30672386 original size:68 final size:65
Alignment explanation
Indices: 30672311--30672458 Score: 163
Period size: 64 Copynumber: 2.2 Consensus size: 65
30672301 CATCATGTGT
* * * *
30672311 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTG-TACACCAT
1 ACAAGAGAGCTAC-AG-CA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGGTGAGACACCAT
30672375 GTAG
62 GTAG
* * * *
30672379 ACAAGAGAGCTACTGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAACGACACCATGT
1 ACAAGAGAGCTACAGCATATATGTAGCTAGGTCGCATGCGTGATACCAGGTG-A-GACACCATGT
30672444 AG
64 AG
30672446 ACAAGAGAGCTAC
1 ACAAGAGAGCTAC
30672459 GAGATAAACT
Statistics
Matches: 69, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
64 27 0.39
65 3 0.04
66 1 0.01
67 25 0.36
68 13 0.19
ACGTcount: A:0.32, C:0.18, G:0.28, T:0.22
Consensus pattern (65 bp):
ACAAGAGAGCTACAGCATATATGTAGCTAGGTCGCATGCGTGATACCAGGTGAGACACCATGTAG
Found at i:30672416 original size:64 final size:64
Alignment explanation
Indices: 30672335--30672506 Score: 188
Period size: 67 Copynumber: 2.7 Consensus size: 64
30672325 AGACATTATG
* * *
30672335 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACTG-GATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTAC-GAGATAA
* * * * *
30672399 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAACGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTAAGTG---TACACCATGTAGACAAGAGAGCTACGAGAT
30672464 AA
63 AA
* *
30672466 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT
1 A-TGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGT
30672507 GTACAAAAGA
Statistics
Matches: 89, Mismatches: 14, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
63 8 0.09
64 27 0.30
66 23 0.26
67 29 0.33
68 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:30676781 original size:43 final size:43
Alignment explanation
Indices: 30676725--30676847 Score: 115
Period size: 43 Copynumber: 2.9 Consensus size: 43
30676715 TACATGAATC
* *
30676725 GCATCCATCATGAACTCAGATCACTCAACGAGCTCGGATGCTA
1 GCATCCATAATGAACTCAGACCACTCAACGAGCTCGGATGCTA
* ** * *
30676768 GCATCTATAATGAACTTGGACCTCTCAATGAGCTCGGATGCTA
1 GCATCCATAATGAACTCAGACCACTCAACGAGCTCGGATGCTA
* * * * *
30676811 -CATACC-TCACGAACCCGGACCACTCAACGAGTTCGGA
1 GCAT-CCATAATGAACTCAGACCACTCAACGAGCTCGGA
30676848 CTTCTTAGTT
Statistics
Matches: 64, Mismatches: 15, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
42 27 0.42
43 37 0.58
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (43 bp):
GCATCCATAATGAACTCAGACCACTCAACGAGCTCGGATGCTA
Found at i:30678258 original size:46 final size:46
Alignment explanation
Indices: 30678205--30678380 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
30678195 TATTTGGGCA
*
30678205 TCCGAACTCGTTGAGTTGAGTCCGGGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
30678251 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
* * *
30678298 TCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
30678344 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
30678381 GTGGGTTACA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 64 0.60
47 31 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.19, C:0.21, G:0.31, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:30678360 original size:93 final size:93
Alignment explanation
Indices: 30678201--30678373 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
30678191 GGGATATTTG
* * * *
30678201 GGCATCCGAACTCGTTGAGTTGAGTCCGGGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
30678266 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
30678294 GGCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
30678359 TTGAGTCTGAGTTCG
66 TTGAGTCCGAGTTCG
30678374 CTTATGGGTG
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:30681928 original size:51 final size:49
Alignment explanation
Indices: 30681860--30681995 Score: 191
Period size: 51 Copynumber: 2.7 Consensus size: 49
30681850 TGTGAGGTCG
30681860 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAA-T-TGATCA
* * * * * *
30681911 CGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAATTGATCA
*
30681960 CATGTGTAGTACTATGTGCAGGCTACTATGCGTACC
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
30681996 AGATAGCTTT
Statistics
Matches: 76, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
49 37 0.49
50 1 0.01
51 38 0.50
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (49 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAATTGATCA
Found at i:30681985 original size:49 final size:51
Alignment explanation
Indices: 30681855--30682000 Score: 206
Period size: 49 Copynumber: 2.9 Consensus size: 51
30681845 TCTATTGTGA
* *
30681855 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTGT
* * * * *
30681906 GATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAA-T-T
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTGT
*
30681955 GGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATA
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
30682001 GCTTTGGCTA
Statistics
Matches: 83, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
49 41 0.49
50 1 0.01
51 41 0.49
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.28
Consensus pattern (51 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTGT
Found at i:30685161 original size:17 final size:17
Alignment explanation
Indices: 30685139--30685174 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
30685129 TAGAATCGGG
*
30685139 TTGAGAAAATTATTTAA
1 TTGAGAAAATTAATTAA
30685156 TTGAGAAAATTAATTAA
1 TTGAGAAAATTAATTAA
30685173 TT
1 TT
30685175 AATATTAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.11, T:0.42
Consensus pattern (17 bp):
TTGAGAAAATTAATTAA
Found at i:30689080 original size:27 final size:27
Alignment explanation
Indices: 30689042--30689095 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
30689032 AAAAAAAATA
30689042 GTAATTATATATAATATTGCATTCATT
1 GTAATTATATATAATATTGCATTCATT
30689069 GTAATTATATATAATATTGCATTCATT
1 GTAATTATATATAATATTGCATTCATT
30689096 CACTTGCATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.37, C:0.07, G:0.07, T:0.48
Consensus pattern (27 bp):
GTAATTATATATAATATTGCATTCATT
Found at i:30689962 original size:26 final size:27
Alignment explanation
Indices: 30689933--30690007 Score: 93
Period size: 26 Copynumber: 2.9 Consensus size: 27
30689923 ATCACCCCAA
**
30689933 TACCCTCT-GTAAAATTTAGATGATTT
1 TACCCTCTCGTAAAATTTAGACAATTT
*
30689959 TACCC-CTCGTATAATTTAGACAATTT
1 TACCCTCTCGTAAAATTTAGACAATTT
*
30689985 TA-CCTCTCGTAAAATTTAAACAA
1 TACCCTCTCGTAAAATTTAGACAA
30690008 AATTCATTCA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
25 4 0.10
26 38 0.90
ACGTcount: A:0.35, C:0.20, G:0.08, T:0.37
Consensus pattern (27 bp):
TACCCTCTCGTAAAATTTAGACAATTT
Found at i:30692432 original size:37 final size:37
Alignment explanation
Indices: 30692326--30692434 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
30692316 AGCTCAGATG
* * *
30692326 AAATCTCCACACGAAGTTATCGGGTCTTACCCAGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
30692363 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
30692400 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
30692435 ATATATATTT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:30693480 original size:50 final size:50
Alignment explanation
Indices: 30692586--30693473 Score: 1361
Period size: 50 Copynumber: 17.7 Consensus size: 50
30692576 CATCGCCTAC
* *
30692586 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--ATAC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
*
30692634 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
* *
30692684 ATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTC--ATAC
1 ATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCATATAT
30692732 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATATAT
*
30692784 ATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
* *
30692834 ATATTTCGCATTAGCCATTCGGCTTTACCACATATGCATATCTCATACATATTT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT--ATA--T
30692888 CATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
1 -ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT--ATA--T
*
30692943 CATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATAC
1 -ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
*
30692992 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATAC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
30693040 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
* *
30693090 ACATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
** *
30693140 ATATTTTGCATTAGCCATTCGGCTTTACCACATATACATATCTC--ATAC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
30693188 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATATAT
* *
30693240 ATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTC--ATAC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
30693288 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
* *
30693338 ACATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
* *
30693388 ATATTTCACATTAGCCATTCGACTTTACCACATATACCTATCTCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
30693438 ATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATA
30693474 TGTATCTTAT
Statistics
Matches: 784, Mismatches: 35, Indels: 40
0.91 0.04 0.05
Matches are distributed among these distances:
48 271 0.35
49 2 0.00
50 315 0.40
51 3 0.00
52 95 0.12
54 1 0.00
55 97 0.12
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.37
Consensus pattern (50 bp):
ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
Found at i:30696636 original size:43 final size:42
Alignment explanation
Indices: 30696588--30696684 Score: 142
Period size: 42 Copynumber: 2.3 Consensus size: 42
30696578 TATCCTAGAT
* *
30696588 ATGGTCTTACATGTTAT-CACATATCGATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATGC-CATAT-GATGCCAATGTCCCAGAC
*
30696631 ATGGTCTTACACGTAATGCTATATGATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATGCCATATGATGCCAATGTCCCAGAC
30696673 ATGGTCTTACAC
1 ATGGTCTTACAC
30696685 ATAACCATGT
Statistics
Matches: 50, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
42 30 0.60
43 19 0.38
44 1 0.02
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.30
Consensus pattern (42 bp):
ATGGTCTTACACGTAATGCCATATGATGCCAATGTCCCAGAC
Found at i:30702324 original size:29 final size:29
Alignment explanation
Indices: 30702271--30702330 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
30702261 AAAAGAAAAA
* *
30702271 TCCCAAAATGTTACAAATTCGAAAAACAC
1 TCCCAAAATGTTACAAAATCAAAAAACAC
*
30702300 TCCCAAAATGTTACAAACAT-AAAAAATAC
1 TCCCAAAATGTTACAAA-ATCAAAAAACAC
30702329 TC
1 TC
30702331 ACTTCTCGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 26 0.96
30 1 0.04
ACGTcount: A:0.50, C:0.23, G:0.05, T:0.22
Consensus pattern (29 bp):
TCCCAAAATGTTACAAAATCAAAAAACAC
Found at i:30702736 original size:21 final size:21
Alignment explanation
Indices: 30702712--30702751 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
30702702 TTCATACCTC
30702712 CAAATCATTGTACATTTTCTT
1 CAAATCATTGTACATTTTCTT
30702733 CAAATCATTGTACATTTTC
1 CAAATCATTGTACATTTTC
30702752 GTACTTCCAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.20, G:0.05, T:0.45
Consensus pattern (21 bp):
CAAATCATTGTACATTTTCTT
Found at i:30706598 original size:55 final size:55
Alignment explanation
Indices: 30706514--30706627 Score: 201
Period size: 55 Copynumber: 2.1 Consensus size: 55
30706504 ACCCTGAAAC
* *
30706514 ACAATTTAATACGAATCAGCAAATCAAAATCGAACTTAATATGATTTATCAACCA
1 ACAATTTAATACCAATCAACAAATCAAAATCGAACTTAATATGATTTATCAACCA
*
30706569 ACAATTTAATACCAATCAACATATCAAAATCGAACTTAATATGATTTATCAACCA
1 ACAATTTAATACCAATCAACAAATCAAAATCGAACTTAATATGATTTATCAACCA
30706624 ACAA
1 ACAA
30706628 CCATAGTTAA
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.48, C:0.19, G:0.05, T:0.27
Consensus pattern (55 bp):
ACAATTTAATACCAATCAACAAATCAAAATCGAACTTAATATGATTTATCAACCA
Found at i:30718068 original size:24 final size:24
Alignment explanation
Indices: 30718041--30718124 Score: 80
Period size: 25 Copynumber: 3.4 Consensus size: 24
30718031 CTGGAGGCCT
*
30718041 AGCCTCTTTTAAT-AATTGGGGCAA
1 AGCC-CTTTTAATAAACTGGGGCAA
*
30718065 AGCCCTTTTTGATAAACTGGGGCAA
1 AGCCC-TTTTAATAAACTGGGGCAA
** * *
30718090 AGCCCTTTTCGGTAAACTGGAGCAT
1 AGCCCTTTT-AATAAACTGGGGCAA
30718115 AGCCCTTTTA
1 AGCCCTTTTA
30718125 GAATTTTCTC
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
23 1 0.02
24 14 0.27
25 36 0.71
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.31
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTGGGGCAA
Found at i:30718091 original size:25 final size:25
Alignment explanation
Indices: 30718057--30718123 Score: 98
Period size: 25 Copynumber: 2.7 Consensus size: 25
30718047 TTTTAATAAT
*
30718057 TGGGGCAAAGCCCTTTTTGATAAAC
1 TGGGGCAAAGCCCTTTTCGATAAAC
*
30718082 TGGGGCAAAGCCCTTTTCGGTAAAC
1 TGGGGCAAAGCCCTTTTCGATAAAC
* *
30718107 TGGAGCATAGCCCTTTT
1 TGGGGCAAAGCCCTTTT
30718124 AGAATTTTCT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.28
Consensus pattern (25 bp):
TGGGGCAAAGCCCTTTTCGATAAAC
Found at i:30718389 original size:27 final size:27
Alignment explanation
Indices: 30718347--30718460 Score: 165
Period size: 27 Copynumber: 4.2 Consensus size: 27
30718337 TCCCACAAGT
* *
30718347 GTATCTCGGTAATTCTACCCTACAGCG
1 GTATTTCGGTAATTCTACCCTACAGGG
* * *
30718374 GTATTCCAGTATTTCTACCCTACAGGG
1 GTATTTCGGTAATTCTACCCTACAGGG
*
30718401 GTATTTTGGTAATTCTACCCTACAGGG
1 GTATTTCGGTAATTCTACCCTACAGGG
*
30718428 GTATTTCGGTAATTCTACCCAACAGGG
1 GTATTTCGGTAATTCTACCCTACAGGG
30718455 GTATTT
1 GTATTT
30718461 TGATATTTTA
Statistics
Matches: 76, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 76 1.00
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.34
Consensus pattern (27 bp):
GTATTTCGGTAATTCTACCCTACAGGG
Found at i:30718548 original size:54 final size:53
Alignment explanation
Indices: 30718481--30718672 Score: 204
Period size: 54 Copynumber: 3.5 Consensus size: 53
30718471 CAAATTGAGA
* * * * * *
30718481 GTATTTCGATAATTTCACAAATCAGGAGTATTTTGGTAATTTTACAAGCCATGG
1 GTATTTTGGTAATTTTACAAATCAGG-GTATTTTAGTAATTTTACAAACCAAGG
* * *
30718535 GTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAATCAGGG
1 GTATTTTGGTAATTTTACAAATCA-GGGTATTTTAGTAATTTTACAAACCAAGG
** **
30718589 GTATTTTGGTAATTTTACTGATCGAGGGTATTTTAGTAATTTTGTAAACCAAGG
1 GTATTTTGGTAATTTTACAAATC-AGGGTATTTTAGTAATTTTACAAACCAAGG
* **
30718643 GTATTTTAGTAATTTTGTAAATCGAGGGTA
1 GTATTTTGGTAATTTTACAAATC-AGGGTA
30718673 AAACGATAAT
Statistics
Matches: 116, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
54 113 0.97
55 3 0.03
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (53 bp):
GTATTTTGGTAATTTTACAAATCAGGGTATTTTAGTAATTTTACAAACCAAGG
Found at i:30718663 original size:27 final size:27
Alignment explanation
Indices: 30718490--30718658 Score: 178
Period size: 27 Copynumber: 6.3 Consensus size: 27
30718480 AGTATTTCGA
* * *
30718490 TAATTTCACAAATC-AGGAGTATTTTGG
1 TAATTTTACAAACCAAGG-GTATTTTAG
* * *
30718517 TAATTTTACAAGCCATGGGTATTTTGG
1 TAATTTTACAAACCAAGGGTATTTTAG
*
30718544 TAATTTTACAAACCAGGGGTATTTTAG
1 TAATTTTACAAACCAAGGGTATTTTAG
* * *
30718571 TAATTTTACAAATCAGGGGTATTTTGG
1 TAATTTTACAAACCAAGGGTATTTTAG
** * *
30718598 TAATTTTACTGATCGAGGGTATTTTAG
1 TAATTTTACAAACCAAGGGTATTTTAG
**
30718625 TAATTTTGTAAACCAAGGGTATTTTAG
1 TAATTTTACAAACCAAGGGTATTTTAG
30718652 TAATTTT
1 TAATTTT
30718659 GTAAATCGAG
Statistics
Matches: 121, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
27 119 0.98
28 2 0.02
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
TAATTTTACAAACCAAGGGTATTTTAG
Found at i:30718665 original size:81 final size:81
Alignment explanation
Indices: 30718490--30718658 Score: 241
Period size: 81 Copynumber: 2.1 Consensus size: 81
30718480 AGTATTTCGA
* * *
30718490 TAATTTCACAAATCAGGAGTATTTTGGTAATTTTACAAGCCATGGGTATTTTGGTAATTTTACAA
1 TAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAGCCATGGGTATTTTAGTAATTTTACAA
*
30718555 ACCAGGGGTATTTTAG
66 ACCAAGGGTATTTTAG
* * * **
30718571 TAATTTTACAAATCAGGGGTATTTTGGTAATTTTACTGATCGA-GGGTATTTTAGTAATTTTGTA
1 TAATTTTACAAATCAGGGGTATTTTGGTAATTTTAC-AAGCCATGGGTATTTTAGTAATTTTACA
30718635 AACCAAGGGTATTTTAG
65 AACCAAGGGTATTTTAG
30718652 TAATTTT
1 TAATTTT
30718659 GTAAATCGAG
Statistics
Matches: 78, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
81 75 0.96
82 3 0.04
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (81 bp):
TAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAGCCATGGGTATTTTAGTAATTTTACAA
ACCAAGGGTATTTTAG
Found at i:30718682 original size:27 final size:27
Alignment explanation
Indices: 30718651--30719048 Score: 553
Period size: 27 Copynumber: 14.7 Consensus size: 27
30718641 GGGTATTTTA
* *
30718651 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
30718678 ATAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
30718705 ATAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
30718732 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
30718759 GTAATTCTATAAATTGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
30718786 GTAATTCTATAAATCTAAGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
30718813 GTAATTCTATAAATCTAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
30718840 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
30718867 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
30718894 GTAATTCTTTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
30718921 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
30718948 GTAATTTTATAAATTGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
30718975 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
30719002 ATAATTCTGTATATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
30719029 GTAATTTTACAAATTGAGGG
1 GTAATTCTATAAATCGAGGG
30719049 CATTTCAGTA
Statistics
Matches: 333, Mismatches: 38, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 333 1.00
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.30
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:30718683 original size:81 final size:81
Alignment explanation
Indices: 30718533--30718683 Score: 187
Period size: 81 Copynumber: 1.9 Consensus size: 81
30718523 TACAAGCCAT
* * **** *
30718533 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAATCAGGGGTATTTTGG
1 GGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAATCAGGGGTAAAACGA
30718598 TAATTTTACTGATCGA
66 TAATTTTACTGATCGA
** **
30718614 GGGTATTTTAGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATC-GAGGGTAAAACG
1 GGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAATCAG-GGGTAAAACG
30718678 ATAATT
65 ATAATT
30718684 CTGTAAATCG
Statistics
Matches: 58, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
80 1 0.02
81 57 0.98
ACGTcount: A:0.31, C:0.07, G:0.22, T:0.40
Consensus pattern (81 bp):
GGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAATCAGGGGTAAAACGA
TAATTTTACTGATCGA
Found at i:30721378 original size:27 final size:27
Alignment explanation
Indices: 30721337--30721390 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
30721327 TGTCATGTGA
* *
30721337 AATTGAATGACAAATTATTGTTACATG
1 AATTGAATGACAAATTACTATTACATG
**
30721364 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGACAAATTACTATTACATG
30721391 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.41, C:0.07, G:0.13, T:0.39
Consensus pattern (27 bp):
AATTGAATGACAAATTACTATTACATG
Found at i:30727726 original size:43 final size:43
Alignment explanation
Indices: 30727691--30727839 Score: 192
Period size: 43 Copynumber: 3.5 Consensus size: 43
30727681 TGTCCTGGAT
* *
30727691 ATGGTCTTACATGTTATCACATATCGATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATCACATATCGATGCCAATGTCCCAGAC
** * *
30727734 ATGGTCTTACACAAAATCATATAACGATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATCACATATCGATGCCAATGTCCCAGAC
* *
30727777 ATGGTCTTACACGTAATCGCAATAT-GATGCCAATGTCCCAGGC
1 ATGGTCTTACACGTAATCAC-ATATCGATGCCAATGTCCCAGAC
* *
30727820 ATGGTCTCACACATAATCAC
1 ATGGTCTTACACGTAATCAC
30727840 CTCTTTTTAA
Statistics
Matches: 90, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
43 87 0.97
44 3 0.03
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (43 bp):
ATGGTCTTACACGTAATCACATATCGATGCCAATGTCCCAGAC
Found at i:30742684 original size:31 final size:31
Alignment explanation
Indices: 30742646--30742708 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
30742636 AACACGGGAG
* *
30742646 TGTGTCTTGGCCGTGTGAAACCTGGACCTAA
1 TGTGTCTTGGCCATGTGAAACCTAGACCTAA
30742677 TGTGTCTTGGCCATGTGAAACCTAGACCTAA
1 TGTGTCTTGGCCATGTGAAACCTAGACCTAA
30742708 T
1 T
30742709 TTCAAATTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.30
Consensus pattern (31 bp):
TGTGTCTTGGCCATGTGAAACCTAGACCTAA
Found at i:30749042 original size:40 final size:40
Alignment explanation
Indices: 30748972--30749148 Score: 216
Period size: 40 Copynumber: 4.5 Consensus size: 40
30748962 ACCCAAGTAT
*
30748972 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
*
30749011 CTTCGGGTCTTAGCCCGAATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
30749051 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * * *
30749091 CTTCGGGACATAGCCTGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
30749131 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
30749149 TTATCATCCG
Statistics
Matches: 116, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.11
40 100 0.86
41 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:30755008 original size:43 final size:43
Alignment explanation
Indices: 30754947--30755054 Score: 139
Period size: 43 Copynumber: 2.5 Consensus size: 43
30754937 ATAGGATTTC
*
30754947 TGATATGTGTTCTCGTGTAAGAAGACATCTGGGA-AGTTGGCAT
1 TGATATGTGTTCTCGTGTAAGAACACATCTGGGACA-TTGGCAT
* *
30754990 TGATATGTGTTCTCGTGTAAGACCACGTCTGGGACATTGGCAT
1 TGATATGTGTTCTCGTGTAAGAACACATCTGGGACATTGGCAT
* *
30755033 CGATATGTGATT-ACGTGTAAGA
1 TGATATGTG-TTCTCGTGTAAGA
30755055 CCTTCTATGG
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
43 55 0.95
44 3 0.05
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.32
Consensus pattern (43 bp):
TGATATGTGTTCTCGTGTAAGAACACATCTGGGACATTGGCAT
Found at i:30755055 original size:43 final size:43
Alignment explanation
Indices: 30754960--30755118 Score: 162
Period size: 43 Copynumber: 3.7 Consensus size: 43
30754950 TATGTGTTCT
** * * *
30754960 CGTGTAAGAAGACATCTGGGA-AGTTGGCATTGATATGTG-TTCT
1 CGTGTAAGACCACGTCTGGGACA-TTGGCATCGATATGTGATT-A
30755003 CGTGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTA
* * * *
30755046 CGTGTAAGACCTTC-TATGGGACAGTGGCATCAATATGTGATTA
1 CGTGTAAGACC-ACGTCTGGGACATTGGCATCGATATGTGATTA
* * *
30755089 CATGTAAGACCACGTTTGGGACGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACATTGGCAT
30755119 TGTATGATAT
Statistics
Matches: 98, Mismatches: 14, Indels: 8
0.82 0.12 0.07
Matches are distributed among these distances:
42 1 0.01
43 93 0.95
44 4 0.04
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTA
Found at i:30760845 original size:37 final size:37
Alignment explanation
Indices: 30760795--30760873 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
30760785 TTATTACGAA
* * *
30760795 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
30760832 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
30760869 GTCTT
1 GTCTT
30760874 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:30761069 original size:47 final size:47
Alignment explanation
Indices: 30760991--30761468 Score: 760
Period size: 47 Copynumber: 9.9 Consensus size: 47
30760981 CCCTTCGGGA
* * * * * *
30760991 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
30761038 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30761085 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30761132 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30761179 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30761228 C-TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30761276 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30761323 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA-G-------GC
30761378 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
30761425 CTTATCACATATATACACTTTCACATTCATCACATCGGTCATTA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
30761469 CGCCATACTA
Statistics
Matches: 409, Mismatches: 11, Indels: 22
0.93 0.02 0.05
Matches are distributed among these distances:
47 267 0.65
48 49 0.12
49 46 0.11
54 1 0.00
55 46 0.11
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:30761370 original size:191 final size:189
Alignment explanation
Indices: 30760991--30761468 Score: 780
Period size: 191 Copynumber: 2.5 Consensus size: 189
30760981 CCCTTCGGGA
* * * * * *
30760991 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGG-CCTATCACATATATAC
30761054 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
65 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
30761119 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
130 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30761179 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATATA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCAC--ATATATA
30761244 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
64 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
30761309 ATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
129 ATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
30761370 CTTATCGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 CTTAT---C--A-CATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC-TATCACAT
*
30761435 ATATACACTTTCACATTCATCACATCGGTCATTA
59 ATATACACTTTCACATTCATCACATCGGCCATTA
30761469 CGCCATACTA
Statistics
Matches: 271, Mismatches: 8, Indels: 14
0.92 0.03 0.05
Matches are distributed among these distances:
188 10 0.04
189 8 0.03
190 30 0.11
191 138 0.51
194 1 0.00
196 36 0.13
197 42 0.15
198 6 0.02
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (189 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATACA
CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
CGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:30773418 original size:34 final size:34
Alignment explanation
Indices: 30773380--30773447 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
30773370 GCAGTACTAA
30773380 AATTTAACTTCGTACCCAAAGCCTCTTGTAATTT
1 AATTTAACTTCGTACCCAAAGCCTCTTGTAATTT
*
30773414 AATTTAACTTCGTACCCAAAGCTTCTTGTAATTT
1 AATTTAACTTCGTACCCAAAGCCTCTTGTAATTT
30773448 CTTTCAAAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.40
Consensus pattern (34 bp):
AATTTAACTTCGTACCCAAAGCCTCTTGTAATTT
Found at i:30780210 original size:27 final size:27
Alignment explanation
Indices: 30780180--30780598 Score: 382
Period size: 27 Copynumber: 15.7 Consensus size: 27
30780170 TAATAAAGAG
* *
30780180 AAATTACCAAAATACCCCCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
30780207 AAATTATCGAAATACCCTCGA-CTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
* *
30780233 AAATTACCAAAATACCCTCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * * *
30780260 AAATTACTGGAAT-CCCCCGATTTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
* *
30780286 AAATTACCAAAACACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
30780313 AAATTACCAAAATACCCCCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
30780340 AAATTACTGAAATA-CCTTGATTATG--
1 AAATTACCGAAATACCCTCGATT-TGTA
* **
30780365 AGATTACTAAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
30780392 AAATTACCGAAATACCCTCGAGTTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
* * **
30780419 AAATTATCGAAACACCCTTAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * * *
30780446 AAATTATCGAAATATCCTTGATTTGTT
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
30780473 AAATTACTGAAATACCATCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
30780500 AAATTACTGAAATACCCTCAATTTATA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
30780527 AAATTACCGAAACACCCCCGATTTATA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
30780554 AAATTATCGAAATACCCTTG-TAGTGTA
1 AAATTACCGAAATACCCTCGAT-TTGTA
* *
30780581 AAATTCCCAAAATACCCT
1 AAATTACCGAAATACCCT
30780599 TGTAGTGTAA
Statistics
Matches: 317, Mismatches: 68, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
25 14 0.04
26 54 0.17
27 249 0.79
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGATTTGTA
Found at i:30780418 original size:133 final size:132
Alignment explanation
Indices: 30780180--30780597 Score: 491
Period size: 133 Copynumber: 3.1 Consensus size: 132
30780170 TAATAAAGAG
* *
30780180 AAATTACCAAAATACCCCCGATTTGTAAAATTA-TCGAAATACCCTCGACTGTGAAATTACCAAA
1 AAATTACCAAAATACCCCCGATTTGTAAAATTACT-GAAATA-CCTCGA-TTTGAAATTACTAAA
* * * * *
30780244 ATACCCTCAATTTGTAAAATTACTGGAAT-CCCCCGATTTGTGAAATTACCAAAACACCCTCGAT
63 ATACCCTCAATTTGTAAAATTACCGAAATACCCCCGATTTGTGAAATTATCGAAACACCCTTGAT
30780308 TTGTA
128 TTGTA
* *
30780313 AAATTACCAAAATACCCCCGATTTGTAAAATTACTGAAATACCTTGATTATGAGATTACTAAAAT
1 AAATTACCAAAATACCCCCGATTTGTAAAATTACTGAAATACCTCGATT-TGAAATTACTAAAAT
* * * *
30780378 ACCCTCGATTTGTAAAATTACCGAAATACCCTCGAGTTGTGAAATTATCGAAACACCCTTAATTT
65 ACCCTCAATTTGTAAAATTACCGAAATACCCCCGATTTGTGAAATTATCGAAACACCCTTGATTT
30780443 GTA
130 GTA
* * * ** * * *
30780446 AAATTATCGAAATATCCTTGATTTGTTAAATTACTGAAATACCATCAATTTGTAAAATTACTGAA
1 AAATTACCAAAATACCCCCGATTTGTAAAATTACTGAAATACC-TCGATTTG--AAATTACTAAA
* * * * *
30780511 ATACCCTCAATTTATAAAATTACCGAAACACCCCCGATTTATAAAATTATCGAAATACCCTTG-T
63 ATACCCTCAATTTGTAAAATTACCGAAATACCCCCGATTTGTGAAATTATCGAAACACCCTTGAT
*
30780575 AGTGTA
128 -TTGTA
*
30780581 AAATTCCCAAAATACCC
1 AAATTACCAAAATACCC
30780598 TTGTAGTGTA
Statistics
Matches: 241, Mismatches: 37, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
131 1 0.00
132 42 0.17
133 112 0.46
134 6 0.02
135 80 0.33
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (132 bp):
AAATTACCAAAATACCCCCGATTTGTAAAATTACTGAAATACCTCGATTTGAAATTACTAAAATA
CCCTCAATTTGTAAAATTACCGAAATACCCCCGATTTGTGAAATTATCGAAACACCCTTGATTTG
TA
Found at i:30780622 original size:27 final size:27
Alignment explanation
Indices: 30780552--30780624 Score: 101
Period size: 27 Copynumber: 2.7 Consensus size: 27
30780542 CCCCGATTTA
30780552 TAAAATTATCGAAATACCCTTGTAGTG
1 TAAAATTATCGAAATACCCTTGTAGTG
** *
30780579 TAAAATTCCCAAAATACCCTTGTAGTG
1 TAAAATTATCGAAATACCCTTGTAGTG
* *
30780606 TAAAATGATCGACATACCC
1 TAAAATTATCGAAATACCC
30780625 CTATAAAGTA
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (27 bp):
TAAAATTATCGAAATACCCTTGTAGTG
Found at i:30784723 original size:46 final size:46
Alignment explanation
Indices: 30784656--30784830 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
30784646 TGTAACCCGC
*
30784656 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
30784702 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * * * *
30784752 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
30784795 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
30784831 ATTCTCAACC
Statistics
Matches: 107, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 62 0.58
47 27 0.25
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:30784779 original size:93 final size:93
Alignment explanation
Indices: 30784664--30784832 Score: 302
Period size: 93 Copynumber: 1.8 Consensus size: 93
30784654 GCCCATAAGT
* * *
30784664 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
30784729 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
30784757 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
30784822 CGAGTTCGGAT
66 CGAGTTCGGAT
30784833 TCTCAACCAT
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:30793594 original size:31 final size:31
Alignment explanation
Indices: 30793556--30793616 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
30793546 AAACTGTCAC
30793556 ACGCCCGTGTAGATGGGTCGTGTGGATTCAA
1 ACGCCCGTGTAGATGGGTCGTGTGGATTCAA
30793587 ACGCCCGTGTAGATGGGTCGTGTGGATTCA
1 ACGCCCGTGTAGATGGGTCGTGTGGATTCA
30793617 CACACTTGTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.18, C:0.20, G:0.36, T:0.26
Consensus pattern (31 bp):
ACGCCCGTGTAGATGGGTCGTGTGGATTCAA
Found at i:30802952 original size:12 final size:12
Alignment explanation
Indices: 30802935--30802960 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
30802925 CCACAAACTC
30802935 TCTTCCTCTCAT
1 TCTTCCTCTCAT
30802947 TCTTCCTCTCAT
1 TCTTCCTCTCAT
30802959 TC
1 TC
30802961 ATTCATAGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.42, G:0.00, T:0.50
Consensus pattern (12 bp):
TCTTCCTCTCAT
Found at i:30803758 original size:21 final size:20
Alignment explanation
Indices: 30803732--30803771 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
30803722 GCATTACGGT
30803732 AAGTTGGGCCTCAAGGGGCTG
1 AAGTTGGGCCT-AAGGGGCTG
*
30803753 AAGTTGGGCCTAATGGGCT
1 AAGTTGGGCCTAAGGGGCT
30803772 TTCGGGCCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.20, C:0.17, G:0.40, T:0.23
Consensus pattern (20 bp):
AAGTTGGGCCTAAGGGGCTG
Found at i:30804149 original size:20 final size:20
Alignment explanation
Indices: 30804124--30804190 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
30804114 ATTTTGATAT
*
30804124 ACATGAT-TGATATGATTTGC
1 ACATGATATG-TATGATATGC
30804144 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
30804164 GCATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
30804184 ACATGAT
1 ACATGAT
30804191 GTATTCATAA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.36
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:30804311 original size:25 final size:26
Alignment explanation
Indices: 30804240--30804336 Score: 153
Period size: 26 Copynumber: 3.8 Consensus size: 26
30804230 GAGGAAGTGC
*
30804240 AAAAGGGCTTATGTCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
30804266 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
30804292 AAAAGGGCTT-TGCCCCAGTTTACTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
30804317 AAAAGGGCTT-TGCCACAGTT
1 AAAAGGGCTTATGCCCCAGTT
30804337 ATTAAAGAGG
Statistics
Matches: 68, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
25 33 0.49
26 35 0.51
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.30
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:30804319 original size:51 final size:51
Alignment explanation
Indices: 30804240--30804336 Score: 151
Period size: 51 Copynumber: 1.9 Consensus size: 51
30804230 GAGGAAGTGC
* * *
30804240 AAAAGGGCTTATGTCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACTGAAAAGGGCTT-TGCCACAGTTTATTG
30804292 AAAAGGGCTT-TGCCCCAGTTTACTGAAAAGGGCTTTGCCACAGTT
1 AAAAGGGCTTATGCCCCAGTTTACTGAAAAGGGCTTTGCCACAGTT
30804337 ATTAAAGAGG
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
50 9 0.21
51 23 0.55
52 10 0.24
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.30
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTACTGAAAAGGGCTTTGCCACAGTTTATTG
Found at i:30808121 original size:40 final size:40
Alignment explanation
Indices: 30808027--30808171 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
30808017 TACTCGAATG
*
30808027 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
30808068 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
30808108 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
30808148 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
30808172 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:30823113 original size:28 final size:29
Alignment explanation
Indices: 30823073--30823143 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
30823063 ATAGTAAGTC
30823073 CGCACACTTAGTGCT-TA-ATAATCAAACT
1 CGCACACTTAGTGCTATACAT-ATCAAACT
* *
30823101 CGCACACTTAGTGCTATACATTTTAAACT
1 CGCACACTTAGTGCTATACATATCAAACT
30823130 CGCACACTTAGTGC
1 CGCACACTTAGTGC
30823144 CAATCTCATT
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
28 15 0.38
29 22 0.56
30 2 0.05
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.30
Consensus pattern (29 bp):
CGCACACTTAGTGCTATACATATCAAACT
Found at i:30830532 original size:20 final size:20
Alignment explanation
Indices: 30830507--30830553 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
30830497 ATTTTAATAT
*
30830507 ACATGAT-TGATATGATTTGC
1 ACATGATATG-TATGATATGC
30830527 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
30830547 ACATGAT
1 ACATGAT
30830554 GTATTCATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 23 0.92
21 2 0.08
ACGTcount: A:0.34, C:0.11, G:0.19, T:0.36
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:30830654 original size:27 final size:26
Alignment explanation
Indices: 30830603--30830752 Score: 234
Period size: 26 Copynumber: 5.8 Consensus size: 26
30830593 GAAGAAGTGC
30830603 AAAAGGGCTTATG-CCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
30830628 AAAAAGGGCTTATGCCCCAGTTTATTG
1 -AAAAGGGCTTATGCCCCAGTTTATTG
30830655 AAAAAGGGCTTATGCCCCAGTTTATTG
1 -AAAAGGGCTTATGCCCCAGTTTATTG
*
30830682 AAAAGGACTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
30830708 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
30830733 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
30830753 ATTAAAGAGG
Statistics
Matches: 119, Mismatches: 4, Indels: 3
0.94 0.03 0.02
Matches are distributed among these distances:
25 33 0.28
26 47 0.39
27 39 0.33
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:30830686 original size:53 final size:52
Alignment explanation
Indices: 30830603--30830752 Score: 234
Period size: 53 Copynumber: 2.9 Consensus size: 52
30830593 GAAGAAGTGC
30830603 AAAAGGGCTTATG-CCCAGTTTATTGAAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG-AAAAGGGCTTATGCCCCAGTTTATTG
*
30830655 AAAAAGGGCTTATGCCCCAGTTTATTGAAAAGGACTTATGCCCCAGTTTATTG
1 -AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTATTG
**
30830708 AAAAGGGCTT-TGCCCCAGTTTACCGAAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTT
30830753 ATTAAAGAGG
Statistics
Matches: 92, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
50 10 0.11
51 22 0.24
52 10 0.11
53 38 0.41
54 12 0.13
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.29
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTATTG
Found at i:30838635 original size:25 final size:25
Alignment explanation
Indices: 30838607--30838654 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
30838597 TTATATTATG
* * *
30838607 AAAATGACTGTTTTGCCCCTAGGTA
1 AAAATGACCGTTATACCCCTAGGTA
30838632 AAAATGACCGTTATACCCCTAGG
1 AAAATGACCGTTATACCCCTAGG
30838655 GTTTACTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (25 bp):
AAAATGACCGTTATACCCCTAGGTA
Found at i:30838715 original size:20 final size:20
Alignment explanation
Indices: 30838690--30838736 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
30838680 ATTTTGATAT
*
30838690 ACATGAT-TGACATGATTTGC
1 ACATGATATG-CATGATATGC
*
30838710 ACATGATATGTATGATATGC
1 ACATGATATGCATGATATGC
30838730 ACATGAT
1 ACATGAT
30838737 GTATTCATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 22 0.92
21 2 0.08
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGCATGATATGC
Found at i:30838841 original size:26 final size:27
Alignment explanation
Indices: 30838788--30838871 Score: 147
Period size: 26 Copynumber: 3.2 Consensus size: 27
30838778 GGAAGTGCAG
30838788 AAGGGCTTA-GCCCCAGTTTATTGAAA
1 AAGGGCTTATGCCCCAGTTTATTGAAA
30838814 AAGGGCTTATGCCCCAGTTTATTGAAA
1 AAGGGCTTATGCCCCAGTTTATTGAAA
30838841 AAGGG-TTATGCCCCAGTTTATTG-AA
1 AAGGGCTTATGCCCCAGTTTATTGAAA
30838866 AAGGGC
1 AAGGGC
30838872 CTCAAGATAT
Statistics
Matches: 56, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
25 7 0.12
26 27 0.48
27 22 0.39
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (27 bp):
AAGGGCTTATGCCCCAGTTTATTGAAA
Found at i:30844763 original size:46 final size:45
Alignment explanation
Indices: 30844696--30844870 Score: 140
Period size: 46 Copynumber: 3.8 Consensus size: 45
30844686 TGTAACCCGC
** *
30844696 CCATAAGCAAACTCGGACTCAACTCAACGAGCTCGGGCATTCACAG
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCATTC-CAG
* * *
30844742 CCATAGGTGAACTCAGACTCAACTCAACGAGTTC-GG-ATGCCTAG
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCATTCC-AG
* * * * * * * *
30844786 TTACATTTCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 --CCA--TAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCATTC-CAG
30844835 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGG
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGG
30844871 ATGCTCAACC
Statistics
Matches: 100, Mismatches: 20, Indels: 18
0.72 0.14 0.13
Matches are distributed among these distances:
43 1 0.01
44 5 0.05
45 4 0.04
46 56 0.56
47 27 0.27
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.20
Consensus pattern (45 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCATTCCAG
Found at i:30844864 original size:93 final size:93
Alignment explanation
Indices: 30844705--30844874 Score: 277
Period size: 93 Copynumber: 1.8 Consensus size: 93
30844695 CCCATAAGCA
* * *
30844705 AACTCGGACTCAACTCAACGAGCTCGGGCATTCACAGCCATAGGTGAACTCAGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCAGACATTCACAGCCATAAGTGAACTCAGACTCAACTCAAC
*
30844770 GAGTTCGGATGCCTAGTTACATTTCACG
66 GAGCTCGGATGCCTAGTTACATTTCACG
* * *
30844798 AACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCAGACATTCACAGCCATAAGTGAACTCAGACTCAACTCAAC
30844863 GAGCTCGGATGC
66 GAGCTCGGATGC
30844875 TCAACCATCC
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCAGACATTCACAGCCATAAGTGAACTCAGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATTTCACG
Found at i:30846418 original size:27 final size:27
Alignment explanation
Indices: 30846387--30846573 Score: 193
Period size: 27 Copynumber: 6.9 Consensus size: 27
30846377 AGACCCCGGT
*
30846387 TTGTAAAATTACCGAAATACCCCTAGA
1 TTGTAAAATTATCGAAATACCCCTAGA
* *
30846414 TTGTAAAATTATCAAAATACCCCCA-A
1 TTGTAAAATTATCGAAATACCCCTAGA
* *
30846440 TTTGTAAAATTATCAAAATACCCCCAGA
1 -TTGTAAAATTATCGAAATACCCCTAGA
* * *
30846468 TTGCAAAATTA-CTGAAATAACCCTAGT
1 TTGTAAAATTATC-GAAATACCCCTAGA
* * *
30846495 TTGTAAAATTACCAAAATA-CCCTTGTA
1 TTGTAAAATTATCGAAATACCCCTAG-A
*
30846522 TTGTAAAATTATCGAAATA-CCCTTGTA
1 TTGTAAAATTATCGAAATACCCCTAG-A
*
30846549 GTGTAAAATTATCGAAATACCCCTA
1 TTGTAAAATTATCGAAATACCCCTA
30846574 TAGGATAAAA
Statistics
Matches: 138, Mismatches: 16, Indels: 11
0.84 0.10 0.07
Matches are distributed among these distances:
26 7 0.05
27 125 0.91
28 6 0.04
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (27 bp):
TTGTAAAATTATCGAAATACCCCTAGA
Found at i:30846526 original size:81 final size:81
Alignment explanation
Indices: 30846391--30846543 Score: 218
Period size: 81 Copynumber: 1.9 Consensus size: 81
30846381 CCCGGTTTGT
* *
30846391 AAAATTACCGAAATACCCCTAGATTGTAAAATTATCAAAATACCCCCAATTTGTAAAATTATCAA
1 AAAATTACCGAAATAACCCTAGATTGTAAAATTACCAAAATACCCCCAATTTGTAAAATTATCAA
30846456 AATACCCCCAGATTGC
66 AATACCCCCAGATTGC
* * *** *
30846472 AAAATTACTGAAATAACCCTAGTTTGTAAAATTACCAAAATA-CCCTTGTATTGTAAAATTATCG
1 AAAATTACCGAAATAACCCTAGATTGTAAAATTACCAAAATACCCCCAAT-TTGTAAAATTATCA
30846536 AAATACCC
65 AAATACCC
30846544 TTGTAGTGTA
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
80 4 0.06
81 59 0.94
ACGTcount: A:0.43, C:0.21, G:0.08, T:0.28
Consensus pattern (81 bp):
AAAATTACCGAAATAACCCTAGATTGTAAAATTACCAAAATACCCCCAATTTGTAAAATTATCAA
AATACCCCCAGATTGC
Found at i:30846557 original size:81 final size:81
Alignment explanation
Indices: 30846388--30846573 Score: 216
Period size: 81 Copynumber: 2.3 Consensus size: 81
30846378 GACCCCGGTT
* *
30846388 TGTAAAATTACCGAAATACCCCTAGATTGTAAAATTATCAAAATACCCCCAATTTGTAAAATTAT
1 TGTAAAATTACTGAAATACCCCTAGATTGTAAAATTACCAAAATACCCCCAATTTGTAAAATTAT
*
30846453 CAAAATACCCCCAGAT
66 CAAAATACCCCCAGAG
* * * ***
30846469 TGCAAAATTACTGAAATAACCCTAGTTTGTAAAATTACCAAAATA-CCCTTGTATTGTAAAATTA
1 TGTAAAATTACTGAAATACCCCTAGATTGTAAAATTACCAAAATACCCCCAAT-TTGTAAAATTA
* **
30846533 TCGAAATA-CCCTTGTAG
65 TCAAAATACCCCCAG-AG
30846550 TGTAAAATTA-TCGAAATACCCCTA
1 TGTAAAATTACT-GAAATACCCCTA
30846574 TAGGATAAAA
Statistics
Matches: 88, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
80 9 0.10
81 79 0.90
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (81 bp):
TGTAAAATTACTGAAATACCCCTAGATTGTAAAATTACCAAAATACCCCCAATTTGTAAAATTAT
CAAAATACCCCCAGAG
Found at i:30847399 original size:31 final size:31
Alignment explanation
Indices: 30847339--30847399 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
30847329 GTATTGGGCT
* *
30847339 TAGGCCCATTTGTTCTATTATTGGTTTGTGC
1 TAGGCCCAATTGTTCTATTATTGGGTTGTGC
*
30847370 TAGGCCCAATTGATTCTGTTA-TGGGTTGTG
1 TAGGCCCAATTG-TTCTATTATTGGGTTGTG
30847400 ACCCAAATGA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
31 19 0.73
32 7 0.27
ACGTcount: A:0.15, C:0.15, G:0.26, T:0.44
Consensus pattern (31 bp):
TAGGCCCAATTGTTCTATTATTGGGTTGTGC
Found at i:30848178 original size:13 final size:13
Alignment explanation
Indices: 30848160--30848186 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
30848150 TTGGTGGACT
30848160 TAAAATATTTTTC
1 TAAAATATTTTTC
30848173 TAAAATATTTTTC
1 TAAAATATTTTTC
30848186 T
1 T
30848187 GAATGTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.56
Consensus pattern (13 bp):
TAAAATATTTTTC
Found at i:30850771 original size:27 final size:27
Alignment explanation
Indices: 30850740--30850866 Score: 170
Period size: 27 Copynumber: 4.7 Consensus size: 27
30850730 CCCTAGTTTT
*
30850740 TAAAATTACTAAAATACCCTCAGA-TTG
1 TAAAATTACCAAAATACCCTC-GATTTG
30850767 TAAAATTACCAAAATACCCTCGATTTG
1 TAAAATTACCAAAATACCCTCGATTTG
* *
30850794 TAATATTACCAAAATACCC-C-ATATTA
1 TAAAATTACCAAAATACCCTCGAT-TTG
*
30850820 TAAAATTACCAAAATACCTTCGATTTG
1 TAAAATTACCAAAATACCCTCGATTTG
*
30850847 TAAAATTATCAAAATACCCT
1 TAAAATTACCAAAATACCCT
30850867 TGTAGTGTAA
Statistics
Matches: 88, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
25 2 0.02
26 22 0.25
27 62 0.70
28 2 0.02
ACGTcount: A:0.44, C:0.20, G:0.05, T:0.31
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCTCGATTTG
Found at i:30850828 original size:53 final size:54
Alignment explanation
Indices: 30850740--30850866 Score: 193
Period size: 53 Copynumber: 2.4 Consensus size: 54
30850730 CCCTAGTTTT
* *
30850740 TAAAATTACTAAAATACCCTCAGATTGTAAAATTACCAAAATACCCTCGATTTG
1 TAAAATTACCAAAATACCCTCAGATTATAAAATTACCAAAATACCCTCGATTTG
* * *
30850794 TAATATTACCAAAATACCC-CATATTATAAAATTACCAAAATACCTTCGATTTG
1 TAAAATTACCAAAATACCCTCAGATTATAAAATTACCAAAATACCCTCGATTTG
*
30850847 TAAAATTATCAAAATACCCT
1 TAAAATTACCAAAATACCCT
30850867 TGTAGTGTAA
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
53 48 0.74
54 17 0.26
ACGTcount: A:0.44, C:0.20, G:0.05, T:0.31
Consensus pattern (54 bp):
TAAAATTACCAAAATACCCTCAGATTATAAAATTACCAAAATACCCTCGATTTG
Found at i:30850875 original size:27 final size:26
Alignment explanation
Indices: 30850740--30850919 Score: 148
Period size: 27 Copynumber: 6.7 Consensus size: 26
30850730 CCCTAGTTTT
* *
30850740 TAAAATTACTAAAATACCCTCAGATTG
1 TAAAATTACCAAAATACCCT-TGATTG
*
30850767 TAAAATTACCAAAATACCCTCGATTTG
1 TAAAATTACCAAAATACCCTTGA-TTG
* * *
30850794 TAATATTACCAAAATACCCCAT-ATTA
1 TAAAATTACCAAAATA-CCCTTGATTG
30850820 TAAAATTACCAAAATA-CCTTCGATTTG
1 TAAAATTACCAAAATACCCTT-GA-TTG
* *
30850847 TAAAATTATCAAAATACCCTTGTAGTG
1 TAAAATTACCAAAATACCCTTG-ATTG
*** * *
30850874 TAAAATTATTGAAGTACCCTTGTAGTG
1 TAAAATTACCAAAATACCCTTG-ATTG
* *
30850901 TAAAATTATCGAAATACCC
1 TAAAATTACCAAAATACCC
30850920 CAGTTGGGTA
Statistics
Matches: 130, Mismatches: 16, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
24 3 0.02
26 20 0.15
27 99 0.76
28 8 0.06
ACGTcount: A:0.42, C:0.18, G:0.08, T:0.32
Consensus pattern (26 bp):
TAAAATTACCAAAATACCCTTGATTG
Found at i:30856105 original size:42 final size:41
Alignment explanation
Indices: 30855954--30856106 Score: 121
Period size: 42 Copynumber: 3.7 Consensus size: 41
30855944 TGAGTTTACC
* * * * *
30855954 TGTAAGAACCATATCTGAGATATGACATCATTGTGATATTTCA
1 TGTAAG-ACCATATCTGGGATATGGCATCAATATGAGA-TTCA
* * * * * * *
30855997 TGTAAGACCAT-GCTAGGACATGGAATCGATATGAGAATCG
1 TGTAAGACCATATCTGGGATATGGCATCAATATGAGATTCA
*
30856037 TGTAAGACCATCA-CTGGGCTATTGGCATCAATATGAGATTCCA
1 TGTAAGACCAT-ATCTGGGATA-TGGCATCAATATGAGATT-CA
*
30856080 CGTAAGACCATATCTGGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
30856107 TGGTACAATT
Statistics
Matches: 84, Mismatches: 21, Indels: 11
0.72 0.18 0.09
Matches are distributed among these distances:
40 13 0.15
41 20 0.24
42 27 0.32
43 24 0.29
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (41 bp):
TGTAAGACCATATCTGGGATATGGCATCAATATGAGATTCA
Found at i:30858045 original size:33 final size:33
Alignment explanation
Indices: 30858003--30858161 Score: 273
Period size: 33 Copynumber: 4.8 Consensus size: 33
30857993 TGAATAACAT
30858003 AGTATCAGTACAGTCTGGGCCAAAGCCCTATTC
1 AGTATCAGTACAGTCTGGGCCAAAGCCCTATTC
30858036 AGTATCAGTACAGTCTGGGCCAAAGCCCTATTC
1 AGTATCAGTACAGTCTGGGCCAAAGCCCTATTC
30858069 AGTATCAGTACAGTCTGGGCCAAAGCCCTATTC
1 AGTATCAGTACAGTCTGGGCCAAAGCCCTATTC
* * *
30858102 AGTATCAGTACATTCTGGGCCTAAGCCCTATAC
1 AGTATCAGTACAGTCTGGGCCAAAGCCCTATTC
* *
30858135 AGAATCAGTACAGTCTGGGCCTAAGCC
1 AGTATCAGTACAGTCTGGGCCAAAGCC
30858162 TTATATAGTA
Statistics
Matches: 121, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 121 1.00
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (33 bp):
AGTATCAGTACAGTCTGGGCCAAAGCCCTATTC
Found at i:30858590 original size:27 final size:26
Alignment explanation
Indices: 30858560--30858647 Score: 86
Period size: 27 Copynumber: 3.3 Consensus size: 26
30858550 GGGCATAATC
30858560 GTCATTTTACCATACAGGGGTATTACA
1 GTCATTTTACC-TACAGGGGTATTACA
* * *
30858587 GTCACTTTACCCTACAGGGGCATTACG
1 GTCATTTTA-CCTACAGGGGTATTACA
* * **
30858614 GTCTTTTTACCTATTAGGGGTATTTTA
1 GTCATTTTACCTA-CAGGGGTATTACA
30858641 GTCATTT
1 GTCATTT
30858648 CGCCTACAAG
Statistics
Matches: 48, Mismatches: 11, Indels: 4
0.76 0.17 0.06
Matches are distributed among these distances:
26 4 0.08
27 42 0.88
28 2 0.04
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.39
Consensus pattern (26 bp):
GTCATTTTACCTACAGGGGTATTACA
Found at i:30858697 original size:27 final size:27
Alignment explanation
Indices: 30858667--30858719 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
30858657 GGGTGTTTTG
*
30858667 GTAAATCTACAAACCAAAGGTATTTCA
1 GTAAATCTAAAAACCAAAGGTATTTCA
* * *
30858694 GTAATTTTAAAAACCAATGGTATTTC
1 GTAAATCTAAAAACCAAAGGTATTTC
30858720 TATAATTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.42, C:0.15, G:0.11, T:0.32
Consensus pattern (27 bp):
GTAAATCTAAAAACCAAAGGTATTTCA
Found at i:30858779 original size:27 final size:27
Alignment explanation
Indices: 30858740--30858973 Score: 181
Period size: 27 Copynumber: 8.7 Consensus size: 27
30858730 AGAAAGTCAA
*
30858740 GGGTATTTCT-GTAATTTTATAAATTAG
1 GGGTATTT-TAGTAATTTTACAAATTAG
* * *
30858767 GGGTATTTTTGTAATTTTCCAAATTAA
1 GGGTATTTTAGTAATTTTACAAATTAG
* * * *
30858794 GGGTATTTCAGTAATATTCCAAATCAG
1 GGGTATTTTAGTAATTTTACAAATTAG
* * *
30858821 GGGTATTTTGGTAATTTTAAAAATTAA
1 GGGTATTTTAGTAATTTTACAAATTAG
* *
30858848 GGGT-TTTTCAGTAATTTTAC-AAGTCG
1 GGGTATTTT-AGTAATTTTACAAATTAG
* * **
30858874 AGGGTA-TTTCGATAATTTTATAGGTT-G
1 -GGGTATTTTAG-TAATTTTACAAATTAG
* * *
30858901 AGGGTATTTCAGTAATTTCACAAACTAG
1 -GGGTATTTTAGTAATTTTACAAATTAG
**
30858929 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTAGTAATTTTACAAATTAG
*
30858956 GGGTATTTTGGTAATTTT
1 GGGTATTTTAGTAATTTT
30858974 GTAAACCAAA
Statistics
Matches: 163, Mismatches: 36, Indels: 16
0.76 0.17 0.07
Matches are distributed among these distances:
26 9 0.06
27 149 0.91
28 5 0.03
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (27 bp):
GGGTATTTTAGTAATTTTACAAATTAG
Found at i:30858823 original size:54 final size:54
Alignment explanation
Indices: 30858685--30858951 Score: 245
Period size: 54 Copynumber: 4.9 Consensus size: 54
30858675 ACAAACCAAA
* * ** * *
30858685 GGTATTTCAGTAATTTTAAAAACCAATGGTATTTCTA-TAATTTTTAGAAAGTCAAG
1 GGTATTTCAGTAATTTTACAAATCAGGGGTATTT-TAGTAA-TTTTACAAA-TTAAG
* * * * *
30858741 GGTATTTCTGTAATTTTATAAATTAGGGGTATTTTTGTAATTTTCCAAATTAAG
1 GGTATTTCAGTAATTTTACAAATCAGGGGTATTTTAGTAATTTTACAAATTAAG
* * * *
30858795 GGTATTTCAGTAATATTCCAAATCAGGGGTATTTTGGTAATTTTAAAAATTAAG
1 GGTATTTCAGTAATTTTACAAATCAGGGGTATTTTAGTAATTTTACAAATTAAG
* * * * ** *
30858849 GGTTTTTCAGTAATTTTACAAGTC-GAGGGTA-TTTCGATAATTTTATAGGTTGAG
1 GGTATTTCAGTAATTTTACAAATCAG-GGGTATTTTAG-TAATTTTACAAATTAAG
*
30858903 GGTATTTCAGTAATTTCACAAA-CTAGGGGTATTTTAGTAATTTTACAAA
1 GGTATTTCAGTAATTTTACAAATC-AGGGGTATTTTAGTAATTTTACAAA
30858952 CCAGGGGTAT
Statistics
Matches: 171, Mismatches: 34, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
53 6 0.04
54 121 0.71
55 13 0.08
56 31 0.18
ACGTcount: A:0.33, C:0.08, G:0.18, T:0.42
Consensus pattern (54 bp):
GGTATTTCAGTAATTTTACAAATCAGGGGTATTTTAGTAATTTTACAAATTAAG
Found at i:30858960 original size:54 final size:54
Alignment explanation
Indices: 30858674--30858973 Score: 230
Period size: 54 Copynumber: 5.5 Consensus size: 54
30858664 TTGGTAAATC
* * * * **
30858674 TACAAACCAAAGGTATTTCAGTAATTTTAAAAACCAATGGTATTTCTA-TAATTTT
1 TACAAATCAAGGGTATTTCAGTAATTTTACAAACTAGGGGTATTT-TAGTAA-TTT
* * * * *
30858729 TAGAAAGTCAAGGGTATTTCTGTAATTTTATAAATTAGGGGTATTTTTGTAATTT
1 TACAAA-TCAAGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTAGTAATTT
* * * * *
30858784 TCCAAATTAAGGGTATTTCAGTAATATTCCAAA-TCAGGGGTATTTTGGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTTTACAAACT-AGGGGTATTTTAGTAATTT
* * * * * *
30858838 TAAAAATTAAGGGTTTTTCAGTAATTTTAC-AAGTCGAGGGTA-TTTCGATAATTT
1 TACAAATCAAGGGTATTTCAGTAATTTTACAAACTAG-GGGTATTTTAG-TAATTT
* ** ** *
30858892 TATAGGTTGAGGGTATTTCAGTAATTTCACAAACTAGGGGTATTTTAGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTAGTAATTT
* * **
30858946 TACAAACCAGGGGTATTTTGGTAATTTT
1 TACAAATCAAGGGTATTTCAGTAATTTT
30858974 GTAAACCAAA
Statistics
Matches: 193, Mismatches: 44, Indels: 17
0.76 0.17 0.07
Matches are distributed among these distances:
53 8 0.04
54 130 0.67
55 21 0.11
56 34 0.18
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.41
Consensus pattern (54 bp):
TACAAATCAAGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTAGTAATTT
Found at i:30858960 original size:81 final size:80
Alignment explanation
Indices: 30858685--30858973 Score: 231
Period size: 81 Copynumber: 3.5 Consensus size: 80
30858675 ACAAACCAAA
* * * * * *
30858685 GGTATTTCAGTAATTTTAAAAACCAATGGTATTTCTATAATTTTTAGAAAGTCAAGGGTATTTCT
1 GGTATTTTAGTAATTTTACAAACCAAGGGTATTTCGATAATTTTTAG---GTTAAGGGTATTTCA
*
30858750 GTAATTTTATAAATTAGG
63 GTAATTTTAAAAATTAGG
* * ** ** ** * * **
30858768 GGTATTTTTGTAATTTTCCAAATTAAGGGTATTTC-AGTAATATTCCAAATCAGGGGTATTTTGG
1 GGTATTTTAGTAATTTTACAAACCAAGGGTATTTCGA-TAAT-TTTTAGGTTAAGGGTATTTCAG
*
30858832 TAATTTTAAAAATTAAG
64 TAATTTTAAAAATTAGG
** * *
30858849 GGT-TTTTCAGTAATTTTACAAGTCGAGGGTATTTCGATAATTTTATAGGTTGAGGGTATTTCAG
1 GGTATTTT-AGTAATTTTACAAACCAAGGGTATTTCGATAATTTT-TAGGTTAAGGGTATTTCAG
* * *
30858913 TAATTTCACAAACTAGG
64 TAATTTTAAAAATTAGG
* * *
30858930 GGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTT
1 GGTATTTTAGTAATTTTACAAACCAAGGGTATTTCGATAATTTT
30858974 GTAAACCAAA
Statistics
Matches: 160, Mismatches: 40, Indels: 14
0.75 0.19 0.07
Matches are distributed among these distances:
80 6 0.04
81 113 0.71
82 6 0.04
83 32 0.20
84 3 0.02
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (80 bp):
GGTATTTTAGTAATTTTACAAACCAAGGGTATTTCGATAATTTTTAGGTTAAGGGTATTTCAGTA
ATTTTAAAAATTAGG
Found at i:30858981 original size:27 final size:27
Alignment explanation
Indices: 30858674--30858973 Score: 144
Period size: 27 Copynumber: 11.0 Consensus size: 27
30858664 TTGGTAAATC
** *
30858674 TACAAACCAAAGGTATTTCAGTAATTT
1 TACAAACCAGGGGTATTTTAGTAATTT
* **
30858701 TAAAAACCAATGGTATTTCTA-TAATTTT
1 TACAAACCAGGGGTATTT-TAGTAA-TTT
* * *
30858729 TAGAAAGTCAAGGGTATTTCT-GTAATTT
1 TACAAA-CCAGGGGTATTT-TAGTAATTT
* ** *
30858757 TATAAATTAGGGGTATTTTTGTAATTT
1 TACAAACCAGGGGTATTTTAGTAATTT
* ** * * *
30858784 TCCAAATTAAGGGTATTTCAGTAATAT
1 TACAAACCAGGGGTATTTTAGTAATTT
* * *
30858811 TCCAAATCAGGGGTATTTTGGTAATTT
1 TACAAACCAGGGGTATTTTAGTAATTT
* ** *
30858838 TAAAAATTAAGGGT-TTTTCAGTAATTT
1 TACAAACCAGGGGTATTTT-AGTAATTT
** *
30858865 TACAAGTC-GAGGGTA-TTTCGATAATTT
1 TACAAACCAG-GGGTATTTTAG-TAATTT
* **** *
30858892 TA-TAGGTTGAGGGTATTTCAGTAATTT
1 TACAAACCAG-GGGTATTTTAGTAATTT
* *
30858919 CACAAACTAGGGGTATTTTAGTAATTT
1 TACAAACCAGGGGTATTTTAGTAATTT
*
30858946 TACAAACCAGGGGTATTTTGGTAATTT
1 TACAAACCAGGGGTATTTTAGTAATTT
30858973 T
1 T
30858974 GTAAACCAAA
Statistics
Matches: 217, Mismatches: 44, Indels: 24
0.76 0.15 0.08
Matches are distributed among these distances:
26 8 0.04
27 171 0.79
28 23 0.11
29 15 0.07
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.41
Consensus pattern (27 bp):
TACAAACCAGGGGTATTTTAGTAATTT
Found at i:30858988 original size:27 final size:27
Alignment explanation
Indices: 30858904--30858997 Score: 64
Period size: 27 Copynumber: 3.5 Consensus size: 27
30858894 TAGGTTGAGG
* * * ***
30858904 GTATTTCAGTAATTTCACAAACTAGGG
1 GTATTTTAGTAATTTTACAAACCAAAA
***
30858931 GTATTTTAGTAATTTTACAAACCAGGG
1 GTATTTTAGTAATTTTACAAACCAAAA
* **
30858958 GTATTTTGGTAATTTTGTAAACCAAAA
1 GTATTTTAGTAATTTTACAAACCAAAA
*
30858985 GTA-TTCAGTAATT
1 GTATTTTAGTAATT
30858998 CTACCCTACA
Statistics
Matches: 56, Mismatches: 11, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
26 8 0.14
27 48 0.86
ACGTcount: A:0.34, C:0.11, G:0.17, T:0.38
Consensus pattern (27 bp):
GTATTTTAGTAATTTTACAAACCAAAA
Found at i:30859020 original size:27 final size:27
Alignment explanation
Indices: 30858987--30859061 Score: 105
Period size: 27 Copynumber: 2.8 Consensus size: 27
30858977 AACCAAAAGT
30858987 ATTCAGTAATTCTACCCTACAAGGGCA
1 ATTCAGTAATTCTACCCTACAAGGGCA
* * *
30859014 TTTCAGTAATTCTACACTACAGGGGCA
1 ATTCAGTAATTCTACCCTACAAGGGCA
* *
30859041 ATTCAGTAATACTAGCCTACA
1 ATTCAGTAATTCTACCCTACA
30859062 GATATGAGAT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (27 bp):
ATTCAGTAATTCTACCCTACAAGGGCA
Found at i:30861119 original size:33 final size:33
Alignment explanation
Indices: 30861076--30861185 Score: 157
Period size: 33 Copynumber: 3.3 Consensus size: 33
30861066 AGTGAATAAC
* *
30861076 ACAGTATCAGTACAGTCTGGGCCAAAGGCCTAT
1 ACAGTATCAGTACAGTCTGGGCCTAAGCCCTAT
* * *
30861109 CCAGTATCAGTATAATCTGGGCCTAAGCCCTAT
1 ACAGTATCAGTACAGTCTGGGCCTAAGCCCTAT
*
30861142 ACAGTATCAGTACAGTCTGGACCTAAGCCCTAT
1 ACAGTATCAGTACAGTCTGGGCCTAAGCCCTAT
*
30861175 ACAGTAGCAGT
1 ACAGTATCAGT
30861186 GTTGGCCTAA
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 67 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (33 bp):
ACAGTATCAGTACAGTCTGGGCCTAAGCCCTAT
Found at i:30861194 original size:28 final size:30
Alignment explanation
Indices: 30861128--30861198 Score: 92
Period size: 33 Copynumber: 2.3 Consensus size: 30
30861118 GTATAATCTG
*
30861128 GGCCTAAGCCCTATACAGTATCAGTACAGTCT
1 GGCCTAAGCCCTATACAGTAGCAGT--AGTCT
30861160 GGACCTAAGCCCTATACAGTAGCAGT-GT-T
1 GG-CCTAAGCCCTATACAGTAGCAGTAGTCT
30861189 GGCCTAAGCC
1 GGCCTAAGCC
30861199 AAATGCAGTA
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
28 8 0.22
29 3 0.08
30 2 0.05
32 2 0.05
33 22 0.59
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.23
Consensus pattern (30 bp):
GGCCTAAGCCCTATACAGTAGCAGTAGTCT
Found at i:30861705 original size:27 final size:27
Alignment explanation
Indices: 30861675--30861727 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
30861665 GGGTGTTTTG
30861675 GTAAATCTACAAACCAAGGGTATTTCA
1 GTAAATCTACAAACCAAGGGTATTTCA
* * * *
30861702 GTAATTTTGCAAACCAATGGTATTTC
1 GTAAATCTACAAACCAAGGGTATTTC
30861728 TCTAATTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (27 bp):
GTAAATCTACAAACCAAGGGTATTTCA
Found at i:30861874 original size:27 final size:27
Alignment explanation
Indices: 30861690--30861900 Score: 165
Period size: 27 Copynumber: 7.8 Consensus size: 27
30861680 TCTACAAACC
* **
30861690 AAGGGTATTTCAGTAATTTTGCAAACC
1 AAGGGTATTTCAGTAATTTTACAAATT
* ** * *
30861717 AATGGTATTTCTCTAATTTTTAGAAAGTC
1 AAGGGTATTTCAGTAA-TTTTACAAA-TT
* **
30861746 AAGGATATTT-ATGTAATTTTGTAAATT
1 AAGGGTATTTCA-GTAATTTTACAAATT
* * *
30861773 AGGGGTATTTCTGTAATTTTCCAAATT
1 AAGGGTATTTCAGTAATTTTACAAATT
* * *
30861800 AAGGGTATTTCAGTAATATTCCAAATC
1 AAGGGTATTTCAGTAATTTTACAAATT
* **
30861827 AGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTCAGTAATTTTACAAATT
*
30861854 AAGGGTATTTCAGTAATTTTAC-AAGT
1 AAGGGTATTTCAGTAATTTTACAAATT
** *
30861880 GGGGGTATTTCGGTAATTTTA
1 AAGGGTATTTCAGTAATTTTA
30861901 TAGGTTGATG
Statistics
Matches: 145, Mismatches: 35, Indels: 9
0.77 0.19 0.05
Matches are distributed among these distances:
26 21 0.14
27 98 0.68
28 14 0.10
29 12 0.08
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
AAGGGTATTTCAGTAATTTTACAAATT
Found at i:30861914 original size:53 final size:54
Alignment explanation
Indices: 30861690--30861981 Score: 232
Period size: 54 Copynumber: 5.4 Consensus size: 54
30861680 TCTACAAACC
* * ** ** * *
30861690 AAGGGTATTTCAGTAATTTTGCAAACCAATGGTATTTCTCTAATTTTTAGAAAGTC
1 AAGGGTATTTCAGTAATTTTACAAATCAGGGGTATTTCGGTAA-TTTTACAAA-TT
* ** * * *
30861746 AAGGATATTT-ATGTAATTTTGTAAATTAGGGGTATTTCTGTAATTTTCCAAATT
1 AAGGGTATTTCA-GTAATTTTACAAATCAGGGGTATTTCGGTAATTTTACAAATT
* * *
30861800 AAGGGTATTTCAGTAATATTCCAAATCAGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTCAGTAATTTTACAAATCAGGGGTATTTCGGTAATTTTACAAATT
* * * **
30861854 AAGGGTATTTCAGTAATTTTACAAGT-GGGGGTATTTCGGTAATTTTATAGGTT
1 AAGGGTATTTCAGTAATTTTACAAATCAGGGGTATTTCGGTAATTTTACAAATT
* * * * * ** **
30861907 GATGGTATTTCGGTAATTTCACAAACCAGGGGTACTTT-GGTAATTTTGTAAACC
1 AAGGGTATTTCAGTAATTTTACAAATCAGGGGTA-TTTCGGTAATTTTACAAATT
*
30861961 AAAGGTA-TTCAGTAATTTTAC
1 AAGGGTATTTCAGTAATTTTAC
30861982 CCTACAAGGG
Statistics
Matches: 190, Mismatches: 42, Indels: 11
0.78 0.17 0.05
Matches are distributed among these distances:
53 54 0.28
54 90 0.47
55 12 0.06
56 34 0.18
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.40
Consensus pattern (54 bp):
AAGGGTATTTCAGTAATTTTACAAATCAGGGGTATTTCGGTAATTTTACAAATT
Found at i:30861940 original size:27 final size:27
Alignment explanation
Indices: 30861768--30861952 Score: 137
Period size: 27 Copynumber: 6.9 Consensus size: 27
30861758 GTAATTTTGT
*
30861768 AAATTAGGGGTATTTCTGTAATTTTC-C
1 AAATTAGGGGTATTTCGGTAA-TTTCAC
* *
30861795 AAATTAAGGGTATTTCAGTAATATTC-C
1 AAATTAGGGGTATTTCGGTAAT-TTCAC
* * *
30861822 AAATCAGGGGTATTTTGGTAATTTTAC
1 AAATTAGGGGTATTTCGGTAATTTCAC
* * *
30861849 AAATTAAGGGTATTTCAGTAATTTTAC
1 AAATTAGGGGTATTTCGGTAATTTCAC
* * * *
30861876 -AAGTGGGGGTATTTCGGTAATTTTAT
1 AAATTAGGGGTATTTCGGTAATTTCAC
** *
30861902 AGGTT-GATGGTATTTCGGTAATTTCAC
1 AAATTAG-GGGTATTTCGGTAATTTCAC
**
30861929 AAACCAGGGGTACTTT-GGTAATTT
1 AAATTAGGGGTA-TTTCGGTAATTT
30861953 TGTAAACCAA
Statistics
Matches: 125, Mismatches: 27, Indels: 12
0.76 0.16 0.07
Matches are distributed among these distances:
26 25 0.20
27 96 0.77
28 4 0.03
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (27 bp):
AAATTAGGGGTATTTCGGTAATTTCAC
Found at i:30862025 original size:27 final size:27
Alignment explanation
Indices: 30861967--30862042 Score: 73
Period size: 27 Copynumber: 2.8 Consensus size: 27
30861957 AACCAAAGGT
*
30861967 ATTCAGTAATTTTACCCTACAAGGGCA
1 ATTCAGTAATTCTACCCTACAAGGGCA
* * * * *
30861994 TTTCAGTAATTCTATCCTATACGGGTA
1 ATTCAGTAATTCTACCCTACAAGGGCA
*
30862021 ATTCAGT-ATTACTAGCCTACAA
1 ATTCAGTAATT-CTACCCTACAA
30862043 ATATGAGATC
Statistics
Matches: 38, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
26 3 0.08
27 35 0.92
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.34
Consensus pattern (27 bp):
ATTCAGTAATTCTACCCTACAAGGGCA
Found at i:30864157 original size:33 final size:33
Alignment explanation
Indices: 30864055--30864164 Score: 148
Period size: 33 Copynumber: 3.3 Consensus size: 33
30864045 AGTGAATAAC
** *
30864055 ACAGTATCAGTACAGTCCAGGCCAAAGCCCTAT
1 ACAGTATCAGTACAGTCTGGGCCTAAGCCCTAT
* * *
30864088 TCAATATCAGTACAGTTTGGGCCTAAGCCCTAT
1 ACAGTATCAGTACAGTCTGGGCCTAAGCCCTAT
*
30864121 ACAGTATCAGTACAGTCTGGGCCTAACCCCTAT
1 ACAGTATCAGTACAGTCTGGGCCTAAGCCCTAT
*
30864154 ACAGTAGCAGT
1 ACAGTATCAGT
30864165 GTGGGCCTAA
Statistics
Matches: 66, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 66 1.00
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (33 bp):
ACAGTATCAGTACAGTCTGGGCCTAAGCCCTAT
Found at i:30864169 original size:28 final size:28
Alignment explanation
Indices: 30864095--30864174 Score: 81
Period size: 33 Copynumber: 2.7 Consensus size: 28
30864085 TATTCAATAT
* *
30864095 CAGTA-CAGTTTGGGCCTAAGCCCTATA
1 CAGTAGCAGTCTGGGCCTAACCCCTATA
30864122 CAGTATCAGTACAGTCTGGGCCTAACCCCTATA
1 CAG--T-AG--CAGTCTGGGCCTAACCCCTATA
*
30864155 CAGTAGCAGTGTGGGCCTAA
1 CAGTAGCAGTCTGGGCCTAA
30864175 GCCAAATGCA
Statistics
Matches: 44, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
27 3 0.07
28 13 0.30
29 1 0.02
30 3 0.07
31 1 0.02
33 23 0.52
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (28 bp):
CAGTAGCAGTCTGGGCCTAACCCCTATA
Found at i:30864186 original size:28 final size:27
Alignment explanation
Indices: 30864090--30864187 Score: 70
Period size: 28 Copynumber: 3.3 Consensus size: 27
30864080 AGCCCTATTC
*
30864090 AATATCAGTACAGTTTGGGCCTAAGCCCTA
1 AATA-CAGTACAGTCTGGGCCTAA-CCC-A
*
30864120 TACAGTATCAGTACAGTCTGGGCCTAACCCC
1 -A-A-TA-CAGTACAGTCTGGGCCTAACCCA
* * *
30864151 TATACAGTAGCAGTGTGGGCCTAAGCCA
1 AATACAGTA-CAGTCTGGGCCTAACCCA
*
30864179 AATGCAGTA
1 AATACAGTA
30864188 ACAATATAGT
Statistics
Matches: 56, Mismatches: 8, Indels: 9
0.77 0.11 0.12
Matches are distributed among these distances:
27 5 0.09
28 24 0.43
29 1 0.02
31 1 0.02
32 4 0.07
33 21 0.38
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.23
Consensus pattern (27 bp):
AATACAGTACAGTCTGGGCCTAACCCA
Found at i:30864578 original size:27 final size:26
Alignment explanation
Indices: 30864548--30864648 Score: 87
Period size: 27 Copynumber: 3.8 Consensus size: 26
30864538 GGGCATAATC
30864548 GTCATTTTACCATACAGGGGTATTACA
1 GTCATTTTACC-TACAGGGGTATTACA
* * *
30864575 GTCACTTTACCCTACAGGGGCATTACG
1 GTCATTTTA-CCTACAGGGGTATTACA
* * **
30864602 GTCTTTTTACCTATTAGGGGTATTTTA
1 GTCATTTTACCTA-CAGGGGTATTACA
*
30864629 GTCATTTCT-CCTACAAGGGT
1 GTCATTT-TACCTACAGGGGT
30864649 GTTTTGCTAA
Statistics
Matches: 58, Mismatches: 13, Indels: 7
0.74 0.17 0.09
Matches are distributed among these distances:
26 9 0.16
27 46 0.79
28 3 0.05
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.37
Consensus pattern (26 bp):
GTCATTTTACCTACAGGGGTATTACA
Found at i:30864694 original size:27 final size:27
Alignment explanation
Indices: 30864664--30864956 Score: 159
Period size: 27 Copynumber: 10.9 Consensus size: 27
30864654 GCTAAATCTA
* *
30864664 CAAACCAAGGGTATTTCAATAATTTTG
1 CAAATCAAGGGTATTTCAGTAATTTTG
* *
30864691 CAAACCAATGGTATTTCTA-TAATTTTTAG
1 CAAATCAAGGGTATTTC-AGTAA-TTTT-G
**
30864720 -AAAGTCAAGGGTATTTTTGTAATTTTG
1 CAAA-TCAAGGGTATTTCAGTAATTTTG
* * * *
30864747 TAAATTAGGGGTATTTCTGTAATTTT-
1 CAAATCAAGGGTATTTCAGTAATTTTG
* * * *
30864773 TAAATTAAGGGTATTTTAGTAATTTTC
1 CAAATCAAGGGTATTTCAGTAATTTTG
** *
30864800 CAAATC-AGGGTATTTTGGTAATTTTA
1 CAAATCAAGGGTATTTCAGTAATTTTG
* *
30864826 CAAATTAAGGGTATTTCAGTAATTTTA
1 CAAATCAAGGGTATTTCAGTAATTTTG
* ** * *
30864853 CAAGT-GGGGAGTATTTCGGTAATTTTA
1 CAAATCAAGG-GTATTTCAGTAATTTTG
* ** ** *
30864880 TAGGTTGAGGGTATTTCAGTAATTTTA
1 CAAATCAAGGGTATTTCAGTAATTTTG
* * *
30864907 CAAACCAGGGGTACTTT-GGTAATTTTG
1 CAAATCAAGGGTA-TTTCAGTAATTTTG
* * *
30864934 TAAACCAAAGGTA-TTCAGTAATT
1 CAAATCAAGGGTATTTCAGTAATT
30864957 CTACCCTACA
Statistics
Matches: 215, Mismatches: 39, Indels: 25
0.77 0.14 0.09
Matches are distributed among these distances:
25 2 0.01
26 54 0.25
27 124 0.58
28 21 0.10
29 14 0.07
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
CAAATCAAGGGTATTTCAGTAATTTTG
Found at i:30864891 original size:54 final size:53
Alignment explanation
Indices: 30864670--30864956 Score: 229
Period size: 53 Copynumber: 5.3 Consensus size: 53
30864660 TCTACAAACC
* * * * ** * *
30864670 AAGGGTATTTCAATAATTTTGCAAACCAATGGTATTTCTATAATTTTTAGAAAGTC
1 AAGGGTATTTCAGTAATTTTACAAATC-AGGGTATTTCGGTAA-TTTTATAAA-TT
** ** * *
30864726 AAGGGTATTTTTGTAATTTTGTAAATTAGGGGTATTTCTGTAATTTT-TAAATT
1 AAGGGTATTTCAGTAATTTTACAAATCA-GGGTATTTCGGTAATTTTATAAATT
* * * *
30864779 AAGGGTATTTTAGTAATTTTCCAAATCAGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTCAGTAATTTTACAAATCAGGGTATTTCGGTAATTTTATAAATT
* ** **
30864832 AAGGGTATTTCAGTAATTTTACAAGTGGGGAGTATTTCGGTAATTTTATAGGTT
1 AAGGGTATTTCAGTAATTTTACAAATCAGG-GTATTTCGGTAATTTTATAAATT
* * * **
30864886 GAGGGTATTTCAGTAATTTTACAAACCAGGGGTACTTT-GGTAATTTTGTAAACC
1 AAGGGTATTTCAGTAATTTTACAAATCA-GGGTA-TTTCGGTAATTTTATAAATT
*
30864940 AAAGGTA-TTCAGTAATT
1 AAGGGTATTTCAGTAATT
30864957 CTACCCTACA
Statistics
Matches: 188, Mismatches: 38, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
52 16 0.09
53 65 0.35
54 64 0.34
55 10 0.05
56 33 0.18
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (53 bp):
AAGGGTATTTCAGTAATTTTACAAATCAGGGTATTTCGGTAATTTTATAAATT
Found at i:30864979 original size:27 final size:27
Alignment explanation
Indices: 30864946--30865018 Score: 110
Period size: 27 Copynumber: 2.7 Consensus size: 27
30864936 AACCAAAGGT
30864946 ATTCAGTAATTCTACCCTACAAGGGCA
1 ATTCAGTAATTCTACCCTACAAGGGCA
* *
30864973 TTTCAGTAATTCTACCCTACAGGGGCA
1 ATTCAGTAATTCTACCCTACAAGGGCA
* *
30865000 ATTCAGTAATACTAGCCTA
1 ATTCAGTAATTCTACCCTA
30865019 GAGATTCACA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.29
Consensus pattern (27 bp):
ATTCAGTAATTCTACCCTACAAGGGCA
Found at i:30869488 original size:26 final size:26
Alignment explanation
Indices: 30869452--30869534 Score: 139
Period size: 26 Copynumber: 3.2 Consensus size: 26
30869442 ATGAAATGCC
30869452 TATCATGGAACATTTACCTAAACCAT
1 TATCATGGAACATTTACCTAAACCAT
* *
30869478 TATCATGGAACATTTACGTAATCCAT
1 TATCATGGAACATTTACCTAAACCAT
*
30869504 TATCATGGAACATTTACCTAACCCAT
1 TATCATGGAACATTTACCTAAACCAT
30869530 TATCA
1 TATCA
30869535 ATTTTTACCA
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.33
Consensus pattern (26 bp):
TATCATGGAACATTTACCTAAACCAT
Found at i:30876328 original size:12 final size:11
Alignment explanation
Indices: 30876299--30876347 Score: 53
Period size: 12 Copynumber: 4.1 Consensus size: 11
30876289 TATAAACACC
30876299 TATTATTTATTAT
1 TATT-TTTATT-T
30876312 TATTTTCTATTT
1 TATTTT-TATTT
30876324 TATTTTTATCTT
1 TATTTTTAT-TT
*
30876336 TATTTATATTT
1 TATTTTTATTT
30876347 T
1 T
30876348 TCAATTACTT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
11 6 0.18
12 19 0.58
13 8 0.24
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.73
Consensus pattern (11 bp):
TATTTTTATTT
Found at i:30887252 original size:29 final size:28
Alignment explanation
Indices: 30887220--30887280 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 28
30887210 ATTTATATTC
30887220 ATATGACCCATTAGGCCCAAACCACCTTT
1 ATATGACCCATTAGGCCCAAACCACC-TT
* * *
30887249 ATATGGCCCATTAGGCCCATATCACCTT
1 ATATGACCCATTAGGCCCAAACCACCTT
30887277 ATAT
1 ATAT
30887281 TCATGCTCAC
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 6 0.21
29 23 0.79
ACGTcount: A:0.30, C:0.31, G:0.11, T:0.28
Consensus pattern (28 bp):
ATATGACCCATTAGGCCCAAACCACCTT
Found at i:30889136 original size:28 final size:28
Alignment explanation
Indices: 30889104--30889168 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 28
30889094 ATTTACTAGA
* *
30889104 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATATATGCAAAATGACCATT
* *
30889132 ATACCCCTATATGTGCAAAATGACCTTT
1 ATACCCCTATATATGCAAAATGACCATT
*
30889160 ATAACCCTA
1 ATACCCCTA
30889169 GGGTTAATTT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.35, C:0.26, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATATATGCAAAATGACCATT
Found at i:30889316 original size:28 final size:27
Alignment explanation
Indices: 30889275--30889363 Score: 81
Period size: 27 Copynumber: 3.2 Consensus size: 27
30889265 GGAAGCGTCT
30889275 TGGTGGCTA-TGCCACAAATTATCTGTTC
1 TGGTGGC-ACTGCCACAAA-TATCTGTTC
* * ** * *
30889303 TGGTTGCCCTGCCACGTATATCTATTT
1 TGGTGGCACTGCCACAAATATCTGTTC
30889330 TGGTGGCACTGCCACAAAATATCTGTATC
1 TGGTGGCACTGCCAC-AAATATCTGT-TC
30889359 TGGTG
1 TGGTG
30889364 ACTCTGTCAC
Statistics
Matches: 46, Mismatches: 12, Indels: 5
0.73 0.19 0.08
Matches are distributed among these distances:
27 20 0.43
28 20 0.43
29 6 0.13
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.35
Consensus pattern (27 bp):
TGGTGGCACTGCCACAAATATCTGTTC
Found at i:30893659 original size:79 final size:81
Alignment explanation
Indices: 30893550--30893732 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
30893540 TACTCGTTCA
* *
30893550 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
30893613 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
* **
30893630 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
30893693 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
30893709 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
30893733 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Done.