Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 94 of 343
Found at i:31305668 original size:43 final size:43
Alignment explanation
Indices: 31305620--31305788 Score: 225
Period size: 43 Copynumber: 4.0 Consensus size: 43
31305610 GTTACTGAGA
*
31305620 TGTGATTACATGTAAGACCATGTCTTGGACATTTGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTTGGACATTGGCATTGTAT
* **
31305663 TGTGATTA-GTGTAAGACCATGT-TTGGGACACGGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTT-GGACATTGGCATTGTAT
* ** *
31305705 TGTGATTACGTAAAAGACCATGTCTAGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTTGGACATTGGCATTGTAT
* *
31305748 TATGATTACATGTAAGACCATGTGTTGGACATTGGCATTGT
1 TGTGATTACATGTAAGACCATGTCTTGGACATTGGCATTGT
31305789 TATTCGATTT
Statistics
Matches: 108, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
41 2 0.02
42 35 0.32
43 70 0.65
44 1 0.01
ACGTcount: A:0.27, C:0.13, G:0.25, T:0.36
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTTGGACATTGGCATTGTAT
Found at i:31308763 original size:23 final size:19
Alignment explanation
Indices: 31308721--31308758 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
31308711 AAATTTGAGA
31308721 TAGAAATAATTATTTTATG
1 TAGAAATAATTATTTTATG
31308740 TAGAAATAATTATTTTATG
1 TAGAAATAATTATTTTATG
31308759 GATGTTATGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.11, T:0.47
Consensus pattern (19 bp):
TAGAAATAATTATTTTATG
Found at i:31309974 original size:48 final size:48
Alignment explanation
Indices: 31309901--31310063 Score: 227
Period size: 48 Copynumber: 3.4 Consensus size: 48
31309891 ATGAGATTCT
* ** * * * *
31309901 GTGTAAGACCATTTCTAAGAAATGGCATCGGCGAGGATATATGTGCCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTGCCA
* *
31309949 GTGTAAGACCATGTCTGGGACATGGCATCAGCGTTGATATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTGCCA
*
31309997 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGACATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTGCCA
*
31310045 ATGTAAGACCATGTCTGGG
1 GTGTAAGACCATGTCTGGG
31310064 TGTATGATAA
Statistics
Matches: 102, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 102 1.00
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.26
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTGCCA
Found at i:31320751 original size:43 final size:43
Alignment explanation
Indices: 31320703--31320869 Score: 153
Period size: 43 Copynumber: 3.9 Consensus size: 43
31320693 CCGAGATGTG
*
31320703 ATTACATGTAAGACCATGTCTGGGACATTGGTATTGTATTGTC
1 ATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTGTC
* * *
31320746 ATTACATGTAAGACCGTTTCTGGTACATTGGCATTGCTA-T-TC
1 ATTACATGTAAGACCATGTCTGGGACATTGGCATTG-TATTGTC
*** * * *
31320788 GATTTTGTGTAAGACCCTGTCTGGGACAGTGGCATTG-ATCTGTG
1 -ATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT-TGTC
* * * *
31320832 ATAACATGTAAGACCATATCTAGGATA-TGGCATTGTAT
1 ATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
31320870 GAGCTTTATG
Statistics
Matches: 98, Mismatches: 20, Indels: 12
0.75 0.15 0.09
Matches are distributed among these distances:
41 1 0.01
42 10 0.10
43 84 0.86
44 3 0.03
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (43 bp):
ATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTGTC
Found at i:31324652 original size:49 final size:49
Alignment explanation
Indices: 31324580--31324753 Score: 213
Period size: 49 Copynumber: 3.5 Consensus size: 49
31324570 TGAGGTCACG
**
31324580 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGGCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGGCGCA
* * * * * * **
31324629 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGGCGCA
* * * *
31324678 CTGTGTAGTATTAAGTGCAGGCTACTACGTGTACCAAATTATTGGTCGCA
1 -TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGGCGCA
31324728 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
31324754 TGCGCACCAG
Statistics
Matches: 102, Mismatches: 22, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
49 65 0.64
50 37 0.36
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGGCGCA
Found at i:31324751 original size:99 final size:100
Alignment explanation
Indices: 31324575--31324757 Score: 305
Period size: 99 Copynumber: 1.8 Consensus size: 100
31324565 TATTGTGAGG
***
31324575 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGGCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAATTGGGCGCATGTGTAGTACT
31324640 AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
66 AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
* * *
31324675 TCAC-TGTGTAGTATTAAGTGCAGGCTACTACGTGTACCAAATTATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAATTGGGCGCATGTGTAGTACT
31324739 AAGTGCAGGCTACTATGCG
66 AAGTGCAGGCTACTATGCG
31324758 CACCAGATAG
Statistics
Matches: 77, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
99 73 0.95
100 4 0.05
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAATTGGGCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
Found at i:31326179 original size:20 final size:20
Alignment explanation
Indices: 31326151--31326188 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
31326141 CAATGTTAAA
31326151 GTTGGGAAAGACTATGGTAT
1 GTTGGGAAAGACTATGGTAT
* *
31326171 GTTGTGAAAGATTATGGT
1 GTTGGGAAAGACTATGGT
31326189 GAGTTGCAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.29, C:0.03, G:0.34, T:0.34
Consensus pattern (20 bp):
GTTGGGAAAGACTATGGTAT
Found at i:31326194 original size:20 final size:19
Alignment explanation
Indices: 31326150--31326194 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
31326140 GCAATGTTAA
31326150 AGTTGGGAAAGACTATGGT
1 AGTTGGGAAAGACTATGGT
* *
31326169 ATGTTGTGAAAGATTATGGT
1 A-GTTGGGAAAGACTATGGT
31326189 GAGTTG
1 -AGTTG
31326195 CAAGTTGGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 1 0.05
20 20 0.91
21 1 0.05
ACGTcount: A:0.29, C:0.02, G:0.36, T:0.33
Consensus pattern (19 bp):
AGTTGGGAAAGACTATGGT
Found at i:31331189 original size:40 final size:40
Alignment explanation
Indices: 31331144--31331225 Score: 164
Period size: 40 Copynumber: 2.0 Consensus size: 40
31331134 AATTGAAGAG
31331144 TATAATTGAAGTAGAGGTCCTTAAATGGTAATTAAACCAT
1 TATAATTGAAGTAGAGGTCCTTAAATGGTAATTAAACCAT
31331184 TATAATTGAAGTAGAGGTCCTTAAATGGTAATTAAACCAT
1 TATAATTGAAGTAGAGGTCCTTAAATGGTAATTAAACCAT
31331224 TA
1 TA
31331226 GGTTTTCATG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.40, C:0.10, G:0.17, T:0.33
Consensus pattern (40 bp):
TATAATTGAAGTAGAGGTCCTTAAATGGTAATTAAACCAT
Found at i:31332338 original size:53 final size:53
Alignment explanation
Indices: 31332160--31332366 Score: 173
Period size: 53 Copynumber: 3.8 Consensus size: 53
31332150 ATTAGGGTTT
* * * * * *
31332160 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGC
* * * * * * * * * *
31332214 AAGAAAATCATATGAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * *
31332269 AAAGAT-CCAATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACC-ATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* * *
31332322 AAGGATACCACGTAAGACCATGTCAAGACATGGAAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
31332367 TAAAAAGAAA
Statistics
Matches: 116, Mismatches: 33, Indels: 9
0.73 0.21 0.06
Matches are distributed among these distances:
53 43 0.37
54 38 0.33
55 35 0.30
ACGTcount: A:0.39, C:0.17, G:0.24, T:0.20
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:31337990 original size:55 final size:54
Alignment explanation
Indices: 31337855--31338043 Score: 155
Period size: 55 Copynumber: 3.5 Consensus size: 54
31337845 GTTTAAGGAT
* * * ** *
31337855 ACCAAGTAAGACCATGTCAAGGCATGGCATTGGTAAGTTTTACAAGGCAAGGAA
1 ACCATGTAAGACCATGTCAAGGCATGGCATTGATAACTACTACAAGGCAAAGAA
* * * * *
31337909 ATCATATAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGCAAAGAT
1 ACCATGTAAGACCATGTCAAGGCATGGCATTGAT-AACTACTACAAGGCAAAGAA
* * * * * * * * * *
31337964 CCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTC-ATAAGGCAAGGAT
1 ACCATGTAAGACCATGTCAAGGCATGGCATTGATAACTACTACAAGGCAAAGAA
* *
31338017 ACCACGTAAGACCATGTCAAGACATGG
1 ACCATGTAAGACCATGTCAAGGCATGG
31338044 AAATGGTAAG
Statistics
Matches: 108, Mismatches: 26, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
53 35 0.32
54 32 0.30
55 41 0.38
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.20
Consensus pattern (54 bp):
ACCATGTAAGACCATGTCAAGGCATGGCATTGATAACTACTACAAGGCAAAGAA
Found at i:31338029 original size:53 final size:53
Alignment explanation
Indices: 31337849--31338055 Score: 216
Period size: 53 Copynumber: 3.8 Consensus size: 53
31337839 ATTAGGGTTT
* * * * *
31337849 AAGGATACCAAGTAAGACCATGTCAAGGCATGGCATTGGTAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAG-TTCATAAGGC
* * * * * * *
31337903 AAGGAAATCATATAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * * * *
31337958 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCATAAGGC
* *
31338011 AAGGATACCACGTAAGACCATGTCAAGACATGGAAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
31338056 TAAAAAGAAA
Statistics
Matches: 122, Mismatches: 29, Indels: 5
0.78 0.19 0.03
Matches are distributed among these distances:
53 45 0.37
54 38 0.31
55 39 0.32
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:31345995 original size:40 final size:40
Alignment explanation
Indices: 31345911--31346135 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
31345901 TTGAATGATG
* * * *
31345911 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
31345951 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
31345991 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
31346030 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
31346070 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
31346111 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
31346136 AATGAGGAGC
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 121 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:31346153 original size:80 final size:80
Alignment explanation
Indices: 31345911--31346168 Score: 233
Period size: 80 Copynumber: 3.2 Consensus size: 80
31345901 TTGAATGATG
* * * * * * *
31345911 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCAT
** *
31345974 TTGTGCGAGAT-ACTAAT
64 TTGAACGAG-TGACTAAA
* *
31345991 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
** *
31346055 GTGCGAGTTACTAAA
66 GAACGAGTGACTAAA
* *
31346070 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
* *
31346134 TGAATGAG-GAGCTATA
65 TGAACGAGTGA-CTAAA
* *
31346150 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
31346169 TACGTGATTT
Statistics
Matches: 153, Mismatches: 19, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.01
79 74 0.48
80 75 0.49
81 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
GAACGAGTGACTAAA
Found at i:31346157 original size:119 final size:119
Alignment explanation
Indices: 31345911--31346168 Score: 274
Period size: 119 Copynumber: 2.2 Consensus size: 119
31345901 TTGAATGATG
* *
31345911 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* ** *
31345976 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
* * * **
31346030 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * *
31346093 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAATGAG-GAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTGA-CTAAA
* *
31346150 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
31346169 TACGTGATTT
Statistics
Matches: 116, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
118 3 0.03
119 83 0.72
120 30 0.26
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
Found at i:31348245 original size:25 final size:26
Alignment explanation
Indices: 31348196--31348245 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
31348186 TAAATTTTTT
*
31348196 TTATTAAAATATATTTAACAATAATC
1 TTATTAAAATATATATAACAATAATC
*
31348222 TTATTAAAATTTA-ATAACAATAAT
1 TTATTAAAATATATATAACAATAAT
31348246 TATCTACCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (26 bp):
TTATTAAAATATATATAACAATAATC
Found at i:31348388 original size:44 final size:45
Alignment explanation
Indices: 31348319--31348411 Score: 116
Period size: 44 Copynumber: 2.1 Consensus size: 45
31348309 TACAACATCT
* * *
31348319 ATTCCATTCAACCAAACACGAGAATT-TTATTATAGCTCTATTCC
1 ATTCCATTCAACCAAACAAGAGAATTATGATTACAGCTCTATTCC
** *
31348363 ATTCCATTCAACCAAACAATTGAATTACTGATTACAGCTTTATTCC
1 ATTCCATTCAACCAAACAAGAGAATTA-TGATTACAGCTCTATTCC
31348409 ATT
1 ATT
31348412 ACAACTCTAT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
44 23 0.56
46 18 0.44
ACGTcount: A:0.34, C:0.24, G:0.06, T:0.35
Consensus pattern (45 bp):
ATTCCATTCAACCAAACAAGAGAATTATGATTACAGCTCTATTCC
Found at i:31348414 original size:16 final size:16
Alignment explanation
Indices: 31348393--31348463 Score: 90
Period size: 16 Copynumber: 4.4 Consensus size: 16
31348383 TGAATTACTG
*
31348393 ATTACAGCTTTATTCC
1 ATTACAGCTCTATTCC
*
31348409 ATTACAACTCTATTCC
1 ATTACAGCTCTATTCC
*
31348425 ATTACAGCTCTATTCA
1 ATTACAGCTCTATTCC
*
31348441 ATTACAG-TCCTATTCT
1 ATTACAGCT-CTATTCC
31348457 ATTACAG
1 ATTACAG
31348464 TGAACCAAAC
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
15 1 0.02
16 48 0.98
ACGTcount: A:0.30, C:0.25, G:0.06, T:0.39
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:31349489 original size:17 final size:17
Alignment explanation
Indices: 31349467--31349499 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
31349457 ACGATTAGTA
31349467 GCATAGGGAGCTTCGTT
1 GCATAGGGAGCTTCGTT
31349484 GCATAGGGAGCTTCGT
1 GCATAGGGAGCTTCGT
31349500 CGCAATGAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.18, C:0.18, G:0.36, T:0.27
Consensus pattern (17 bp):
GCATAGGGAGCTTCGTT
Found at i:31357806 original size:30 final size:31
Alignment explanation
Indices: 31357764--31357832 Score: 104
Period size: 30 Copynumber: 2.3 Consensus size: 31
31357754 AAAAGAAAAC
*
31357764 AGTTTAGTGACTTAAATAAAAACTTTTGAAT
1 AGTTTAGTGACTTAAATAAAAACTTTCGAAT
*
31357795 AGTTTA-TGACTTAAATGAAAACTTTCGAAT
1 AGTTTAGTGACTTAAATAAAAACTTTCGAAT
*
31357825 AATTTAGT
1 AGTTTAGT
31357833 AACAATTTTG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
30 27 0.79
31 7 0.21
ACGTcount: A:0.41, C:0.07, G:0.13, T:0.39
Consensus pattern (31 bp):
AGTTTAGTGACTTAAATAAAAACTTTCGAAT
Found at i:31368886 original size:43 final size:43
Alignment explanation
Indices: 31368838--31368937 Score: 157
Period size: 43 Copynumber: 2.3 Consensus size: 43
31368828 TTCAATGATC
* *
31368838 TCGCACACTTAGTGCCAATTAATTAG-TCGAAGTTATAATTGTA
1 TCGCACACTTAGTGCCAAATAATTAGCT-GAAGCTATAATTGTA
31368881 TCGCACACTTAGTGCCAAATAATTAGCTGAAGCTATAATTGTA
1 TCGCACACTTAGTGCCAAATAATTAGCTGAAGCTATAATTGTA
*
31368924 TCACACACTTAGTG
1 TCGCACACTTAGTG
31368938 TCATTTACTC
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
43 52 0.98
44 1 0.02
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (43 bp):
TCGCACACTTAGTGCCAAATAATTAGCTGAAGCTATAATTGTA
Found at i:31375378 original size:29 final size:29
Alignment explanation
Indices: 31375328--31375396 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 29
31375318 TAGGAATAGA
*
31375328 AAATTCCATTAGGATATCTTAAATTAATT
1 AAATTTCATTAGGATATCTTAAATTAATT
* * * *
31375357 AAATTTCATTAGGTTCTTTTAAGTTAATT
1 AAATTTCATTAGGATATCTTAAATTAATT
*
31375386 -AATTTAATTAG
1 AAATTTCATTAG
31375397 TTTATTTAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
28 10 0.29
29 24 0.71
ACGTcount: A:0.38, C:0.07, G:0.09, T:0.46
Consensus pattern (29 bp):
AAATTTCATTAGGATATCTTAAATTAATT
Found at i:31378506 original size:42 final size:42
Alignment explanation
Indices: 31378395--31378516 Score: 165
Period size: 43 Copynumber: 2.9 Consensus size: 42
31378385 TACTGTACCA
* *
31378395 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATCG
* * *
31378437 ATGCCAATAGCCCAGCTATGGTCTTACACG-AAGTCTTATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGTAA-TCTCATATCG
*
31378480 ATGCCATATCCCAGATATGGTCTTACACGTTATCTCA
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCA
31378517 ATAATCTTAA
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
42 33 0.49
43 35 0.51
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATCG
Found at i:31380346 original size:83 final size:83
Alignment explanation
Indices: 31380234--31380404 Score: 288
Period size: 83 Copynumber: 2.1 Consensus size: 83
31380224 ATGCCAAGCC
* * *
31380234 GTGTGAAAAATCCTGAGCATTCTGTTTTGAAATTTTAAGATGCAAGAGACACATGGCCAAGACAG
1 GTGTGAAAAATCCTGAGCATTCTGATTTGAAATTTTAAGATGCAAGAGACACAAGGCCAAGACAC
31380299 ACGCCCATGTGCTAGGCT
66 ACGCCCATGTGCTAGGCT
* * *
31380317 GTGTGAAAAATCCTGAGCATTCTGATTTGAAATTTTAAGATGCAGGGGACACAAGGCCAAGATAC
1 GTGTGAAAAATCCTGAGCATTCTGATTTGAAATTTTAAGATGCAAGAGACACAAGGCCAAGACAC
31380382 ACGCCCATGTGCTAGGCT
66 ACGCCCATGTGCTAGGCT
31380400 GTGTG
1 GTGTG
31380405 TCACAGACGG
Statistics
Matches: 82, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
83 82 1.00
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (83 bp):
GTGTGAAAAATCCTGAGCATTCTGATTTGAAATTTTAAGATGCAAGAGACACAAGGCCAAGACAC
ACGCCCATGTGCTAGGCT
Found at i:31381382 original size:25 final size:25
Alignment explanation
Indices: 31381352--31381448 Score: 72
Period size: 25 Copynumber: 3.9 Consensus size: 25
31381342 CCCTCTCTCA
31381352 AGCCATATAACAGGAAGCTCATATG
1 AGCCATATAACAGGAAGCTCATATG
* * *
31381377 AGCCATGTAACGGGAAGCTTAT-TCG
1 AGCCATATAACAGGAAGCTCATAT-G
* ** * *
31381402 GGCTGTATAACGGGAAGCTCATAAG
1 AGCCATATAACAGGAAGCTCATATG
* * *
31381427 AGCCACA-ATCAGGAAGTTCATA
1 AGCCATATAACAGGAAGCTCATA
31381449 CAAGCCAATA
Statistics
Matches: 54, Mismatches: 16, Indels: 5
0.72 0.21 0.07
Matches are distributed among these distances:
24 13 0.24
25 41 0.76
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.21
Consensus pattern (25 bp):
AGCCATATAACAGGAAGCTCATATG
Found at i:31382024 original size:5 final size:5
Alignment explanation
Indices: 31381995--31382033 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
31381985 TAAATTTAGC
* *
31381995 TCAAT TTAAT ACAAT TCATAT TCAAT TCAAT TCAAT TCA
1 TCAAT TCAAT TCAAT TCA-AT TCAAT TCAAT TCAAT TCA
31382034 CATCTTAGAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 24 0.83
6 5 0.17
ACGTcount: A:0.41, C:0.18, G:0.00, T:0.41
Consensus pattern (5 bp):
TCAAT
Found at i:31387651 original size:29 final size:29
Alignment explanation
Indices: 31387595--31387650 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
31387585 GGCCCCAAAT
*
31387595 TTTTATTTTATTACTAGTATATATTTTTA
1 TTTTATTGTATTACTAGTATATATTTTTA
* *
31387624 TTTTATTGTATTAC-ATTTTATATTTTT
1 TTTTATTGTATTACTAGTATATATTTTT
31387651 TTTAAAAGGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 11 0.46
29 13 0.54
ACGTcount: A:0.25, C:0.04, G:0.04, T:0.68
Consensus pattern (29 bp):
TTTTATTGTATTACTAGTATATATTTTTA
Found at i:31390618 original size:16 final size:16
Alignment explanation
Indices: 31390597--31390630 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
31390587 GTTGATCGTT
*
31390597 AATTAAATTGTAGGTC
1 AATTAAATTGCAGGTC
31390613 AATTAAATTGCAGGTC
1 AATTAAATTGCAGGTC
31390629 AA
1 AA
31390631 CATAGGAGTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.41, C:0.09, G:0.18, T:0.32
Consensus pattern (16 bp):
AATTAAATTGCAGGTC
Found at i:31394002 original size:24 final size:24
Alignment explanation
Indices: 31393974--31394021 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
31393964 AGATAAAGGA
31393974 AAGCTAAAGAGAGAGGCTTTAAAG
1 AAGCTAAAGAGAGAGGCTTTAAAG
* *
31393998 AAGCTAAAGAGGGAGGTTTTAAAG
1 AAGCTAAAGAGAGAGGCTTTAAAG
31394022 CTTGAATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.44, C:0.06, G:0.31, T:0.19
Consensus pattern (24 bp):
AAGCTAAAGAGAGAGGCTTTAAAG
Found at i:31397126 original size:18 final size:19
Alignment explanation
Indices: 31397100--31397136 Score: 67
Period size: 18 Copynumber: 2.0 Consensus size: 19
31397090 TTCCAGAATA
31397100 TATTGAATTTCCAAAACGT
1 TATTGAATTTCCAAAACGT
31397119 TATT-AATTTCCAAAACGT
1 TATTGAATTTCCAAAACGT
31397137 CACTTGTCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.38, C:0.16, G:0.08, T:0.38
Consensus pattern (19 bp):
TATTGAATTTCCAAAACGT
Found at i:31413835 original size:15 final size:16
Alignment explanation
Indices: 31413801--31413837 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
31413791 ACCCAACCTA
*
31413801 ACCCAAAACCCAGAAG
1 ACCCAAAACCCACAAG
31413817 -CCCAAAACCC-CAAG
1 ACCCAAAACCCACAAG
31413831 ACCCAAA
1 ACCCAAA
31413838 TCAAAAACAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
14 3 0.16
15 16 0.84
ACGTcount: A:0.49, C:0.43, G:0.08, T:0.00
Consensus pattern (16 bp):
ACCCAAAACCCACAAG
Found at i:31413930 original size:29 final size:29
Alignment explanation
Indices: 31413898--31413962 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
31413888 TGCCCTCTGA
31413898 CACCAGCACCGGTCACCATCCCCTGGCGC
1 CACCAGCACCGGTCACCATCCCCTGGCGC
*
31413927 CACCAGCACCGGTCACCATCCCCTGGTGC
1 CACCAGCACCGGTCACCATCCCCTGGCGC
31413956 CACCAGC
1 CACCAGC
31413963 TCTGCTCCAC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.18, C:0.51, G:0.20, T:0.11
Consensus pattern (29 bp):
CACCAGCACCGGTCACCATCCCCTGGCGC
Found at i:31415402 original size:3 final size:3
Alignment explanation
Indices: 31415394--31415418 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
31415384 AGTTATTCTT
31415394 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
31415419 CTTCTTTGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:31422418 original size:12 final size:12
Alignment explanation
Indices: 31422385--31422419 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
31422375 TGACACAAGA
31422385 TATTCTTTAAAT
1 TATTCTTTAAAT
*
31422397 TACTCTTTTAAAT
1 TATTC-TTTAAAT
31422410 TATTCTTTAA
1 TATTCTTTAA
31422420 TTAACATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.31, C:0.11, G:0.00, T:0.57
Consensus pattern (12 bp):
TATTCTTTAAAT
Found at i:31424107 original size:40 final size:40
Alignment explanation
Indices: 31424023--31424206 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
31424013 TTGAATGCTG
* * * *
31424023 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
31424062 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
31424103 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
31424143 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
31424183 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
31424207 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:31424160 original size:80 final size:81
Alignment explanation
Indices: 31424023--31424203 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
31424013 TTGAATGCTG
* * *
31424023 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
31424087 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
31424103 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
31424164 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
31424183 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
31424204 ATTGAATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:31424227 original size:39 final size:38
Alignment explanation
Indices: 31424104--31424253 Score: 122
Period size: 40 Copynumber: 3.8 Consensus size: 38
31424094 GTTATTAATT
* ** * *
31424104 CCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTACT-ATA
** * *
31424144 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTACT-ATA
*
31424183 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATGA
1 -CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTAT-A
* *
31424223 CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 CCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
31424254 GAGCTATATC
Statistics
Matches: 92, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
39 32 0.35
40 60 0.65
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTATA
Found at i:31425940 original size:39 final size:38
Alignment explanation
Indices: 31425840--31425948 Score: 94
Period size: 44 Copynumber: 2.7 Consensus size: 38
31425830 TTTTTTTATG
* * *
31425840 CTATTACAATTCTATTCCATTCAACTAAGCATAAGAATA
1 CTATTACAGTTTTATTCCATTCAACCAA-CATAAGAATA
*
31425879 CTATTACAGTTTTATTTCATTCCATTCAACCAA-ATAATTGATTA
1 CTATTACAG---T-TTT-ATTCCATTCAACCAACATAA--GAATA
31425923 CTATTACAGTTTTATTCCATTACAAC
1 CTATTACAGTTTTATTCCATT-CAAC
31425949 TTTATTTTAT
Statistics
Matches: 58, Mismatches: 4, Indels: 15
0.75 0.05 0.19
Matches are distributed among these distances:
39 16 0.28
40 7 0.12
41 1 0.02
42 5 0.09
43 2 0.03
44 27 0.47
ACGTcount: A:0.36, C:0.20, G:0.05, T:0.39
Consensus pattern (38 bp):
CTATTACAGTTTTATTCCATTCAACCAACATAAGAATA
Found at i:31427408 original size:30 final size:32
Alignment explanation
Indices: 31427353--31427416 Score: 87
Period size: 30 Copynumber: 2.1 Consensus size: 32
31427343 TAATAAAAGT
*
31427353 AAAATTGTAATTTGATCTCTTTAAAAATGATA
1 AAAATTGTAATTTAATCTCTTTAAAAATGATA
* *
31427385 AAAATT-TAATTTAAT-TTTTTAAAAATTATA
1 AAAATTGTAATTTAATCTCTTTAAAAATGATA
31427415 AA
1 AA
31427417 GATATAGACT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 15 0.52
31 8 0.28
32 6 0.21
ACGTcount: A:0.48, C:0.03, G:0.05, T:0.44
Consensus pattern (32 bp):
AAAATTGTAATTTAATCTCTTTAAAAATGATA
Found at i:31428651 original size:19 final size:19
Alignment explanation
Indices: 31428593--31428656 Score: 58
Period size: 20 Copynumber: 3.3 Consensus size: 19
31428583 TTTTAGTAGG
* * *
31428593 AAAAAAAATAAAACCACGA
1 AAAAAAAATGAAACAAGGA
* *
31428612 AAGGAAAAATGAAACAGGGA
1 AA-AAAAAATGAAACAAGGA
31428632 ATAAAAAAATGAAA-AAGGA
1 A-AAAAAAATGAAACAAGGA
31428651 AAAAAA
1 AAAAAA
31428657 GAAAAGGAAT
Statistics
Matches: 36, Mismatches: 7, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
18 5 0.14
19 7 0.19
20 23 0.64
21 1 0.03
ACGTcount: A:0.72, C:0.06, G:0.16, T:0.06
Consensus pattern (19 bp):
AAAAAAAATGAAACAAGGA
Found at i:31428661 original size:14 final size:16
Alignment explanation
Indices: 31428634--31428665 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
31428624 AACAGGGAAT
31428634 AAAAAAATGAAAAAGG
1 AAAAAAATGAAAAAGG
31428650 AAAAAAA-G-AAAAGG
1 AAAAAAATGAAAAAGG
31428664 AA
1 AA
31428666 TTGTGGGCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 1 0.06
16 7 0.44
ACGTcount: A:0.78, C:0.00, G:0.19, T:0.03
Consensus pattern (16 bp):
AAAAAAATGAAAAAGG
Found at i:31429608 original size:17 final size:19
Alignment explanation
Indices: 31429566--31429609 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
31429556 TATGAAATTT
*
31429566 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
31429585 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
31429603 AA-TATTA
1 AATTATTA
31429610 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:31429719 original size:15 final size:15
Alignment explanation
Indices: 31429701--31429729 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
31429691 ATATTTATAA
31429701 AATTATTATTATTAT
1 AATTATTATTATTAT
31429716 AATTATTATTATTA
1 AATTATTATTATTA
31429730 GATAGGAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
AATTATTATTATTAT
Found at i:31430680 original size:129 final size:129
Alignment explanation
Indices: 31430450--31430707 Score: 507
Period size: 129 Copynumber: 2.0 Consensus size: 129
31430440 TGGTGAAGGA
*
31430450 GTTGGGGTTTGATCAGGACTCTTGGCAGCATGCCTGAGGCGGTGCCAACGGTGGGCTCTGATCGG
1 GTTGGGGTCTGATCAGGACTCTTGGCAGCATGCCTGAGGCGGTGCCAACGGTGGGCTCTGATCGG
31430515 TCAAGAGTTTGAACGGAATTCAAACATTGAATGTGGCCAAAAATCAAGGAGCAATTCGGGGAAT
66 TCAAGAGTTTGAACGGAATTCAAACATTGAATGTGGCCAAAAATCAAGGAGCAATTCGGGGAAT
31430579 GTTGGGGTCTGATCAGGACTCTTGGCAGCATGCCTGAGGCGGTGCCAACGGTGGGCTCTGATCGG
1 GTTGGGGTCTGATCAGGACTCTTGGCAGCATGCCTGAGGCGGTGCCAACGGTGGGCTCTGATCGG
31430644 TCAAGAGTTTGAACGGAATTCAAACATTGAATGTGGCCAAAAATCAAGGAGCAATTCGGGGAAT
66 TCAAGAGTTTGAACGGAATTCAAACATTGAATGTGGCCAAAAATCAAGGAGCAATTCGGGGAAT
31430708 TGGAATTTAG
Statistics
Matches: 128, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
129 128 1.00
ACGTcount: A:0.26, C:0.18, G:0.33, T:0.23
Consensus pattern (129 bp):
GTTGGGGTCTGATCAGGACTCTTGGCAGCATGCCTGAGGCGGTGCCAACGGTGGGCTCTGATCGG
TCAAGAGTTTGAACGGAATTCAAACATTGAATGTGGCCAAAAATCAAGGAGCAATTCGGGGAAT
Found at i:31430817 original size:15 final size:15
Alignment explanation
Indices: 31430797--31430864 Score: 52
Period size: 15 Copynumber: 4.7 Consensus size: 15
31430787 GATTCAGTTT
31430797 TTTTCTTCTATTTTC
1 TTTTCTTCTATTTTC
* *
31430812 TTTTCTTATCTTTTC
1 TTTTCTTCTATTTTC
** *
31430827 TCCTC-TCTACTTT-
1 TTTTCTTCTATTTTC
*
31430840 TTTTCTTCT-TCTTC
1 TTTTCTTCTATTTTC
*
31430854 TTTTCCTCTAT
1 TTTTCTTCTAT
31430865 AGCCAAATCT
Statistics
Matches: 38, Mismatches: 12, Indels: 6
0.68 0.21 0.11
Matches are distributed among these distances:
13 5 0.13
14 16 0.42
15 17 0.45
ACGTcount: A:0.06, C:0.26, G:0.00, T:0.68
Consensus pattern (15 bp):
TTTTCTTCTATTTTC
Found at i:31432382 original size:60 final size:60
Alignment explanation
Indices: 31432284--31432416 Score: 155
Period size: 60 Copynumber: 2.2 Consensus size: 60
31432274 CTGTGTTAAC
*
31432284 ATGGGCAAGGCCCAATATATCTCGACTTGTAATAGGGCTACGACCCAGATTAATACTGAT
1 ATGGGCTAGGCCCAATATATCTCGACTTGTAATAGGGCTACGACCCAGATTAATACTGAT
* * * * *
31432344 ATGGGCTAGGCCCAATATA-CTCTGA-TACTGTAA-GGGGCTATGGCCTAGATTAATATTGAT
1 ATGGGCTAGGCCCAATATATCTC-GACT--TGTAATAGGGCTACGACCCAGATTAATACTGAT
31432404 ATGGGCTAAGGCC
1 ATGGGCT-AGGCC
31432417 TAATTAACAC
Statistics
Matches: 63, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
59 4 0.06
60 49 0.78
61 10 0.16
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (60 bp):
ATGGGCTAGGCCCAATATATCTCGACTTGTAATAGGGCTACGACCCAGATTAATACTGAT
Found at i:31432430 original size:27 final size:28
Alignment explanation
Indices: 31432378--31432430 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
31432368 ATACTGTAAG
* * *
31432378 GGGCTATGGCCTAGATTAATATTGATAT
1 GGGCTAAGGCCTAGATTAACACTGATAT
31432406 GGGCTAAGGCCTA-ATTAACACTGAT
1 GGGCTAAGGCCTAGATTAACACTGAT
31432431 TTCTGAATAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 10 0.45
28 12 0.55
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (28 bp):
GGGCTAAGGCCTAGATTAACACTGATAT
Found at i:31435012 original size:18 final size:17
Alignment explanation
Indices: 31434984--31435018 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
31434974 ATTATTAAGA
*
31434984 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
31435001 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
31435019 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:31435267 original size:45 final size:44
Alignment explanation
Indices: 31435178--31435272 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 44
31435168 TTACACCTCT
*
31435178 ATTACATTCAACCAAACACAGGATTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACACAGGATTACTATTACACCTCTATTCC
*** *
31435222 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACACAGGA-TTACTATTACACCTCTATTCC
31435267 ATTACA
1 ATTACA
31435273 CCTCTATTCT
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 20 0.44
45 25 0.56
ACGTcount: A:0.34, C:0.27, G:0.06, T:0.33
Consensus pattern (44 bp):
ATTACATTCAACCAAACACAGGATTACTATTACACCTCTATTCC
Found at i:31435272 original size:16 final size:16
Alignment explanation
Indices: 31435251--31435320 Score: 95
Period size: 16 Copynumber: 4.4 Consensus size: 16
31435241 TTGATTTGCT
*
31435251 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
* *
31435267 ATTACACCTCTATTCT
1 ATTACACCTCTAATCC
31435283 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
*
31435299 AATACACCTCTAATCC
1 ATTACACCTCTAATCC
*
31435315 AATACA
1 ATTACA
31435321 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.33, C:0.34, G:0.00, T:0.33
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:31435285 original size:32 final size:32
Alignment explanation
Indices: 31435249--31435310 Score: 106
Period size: 32 Copynumber: 1.9 Consensus size: 32
31435239 AGTTGATTTG
* *
31435249 CTATTACACCTCTATTCCATTACACCTCTATT
1 CTATTACACCTCTAATCCAATACACCTCTATT
31435281 CTATTACACCTCTAATCCAATACACCTCTA
1 CTATTACACCTCTAATCCAATACACCTCTA
31435311 ATCCAATACA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.29, C:0.35, G:0.00, T:0.35
Consensus pattern (32 bp):
CTATTACACCTCTAATCCAATACACCTCTATT
Found at i:31437603 original size:9 final size:9
Alignment explanation
Indices: 31437531--31437583 Score: 79
Period size: 9 Copynumber: 5.9 Consensus size: 9
31437521 TGGTTAAAAC
*
31437531 TTAACTGAA
1 TTAACCGAA
*
31437540 TTAAACGAA
1 TTAACCGAA
*
31437549 TTACCCGAA
1 TTAACCGAA
31437558 TTAACCGAA
1 TTAACCGAA
31437567 TTAACCGAA
1 TTAACCGAA
31437576 TTAACCGA
1 TTAACCGA
31437584 TCACTCGAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 39 1.00
ACGTcount: A:0.43, C:0.21, G:0.11, T:0.25
Consensus pattern (9 bp):
TTAACCGAA
Found at i:31437633 original size:17 final size:17
Alignment explanation
Indices: 31437611--31437745 Score: 72
Period size: 17 Copynumber: 7.4 Consensus size: 17
31437601 ATTGAATCAC
31437611 TACATAATTAAAAACAT
1 TACATAATTAAAAACAT
** * *
31437628 TACATAAGTCTTTGAATCAC
1 TACATAA---TTAAAAACAT
*
31437648 TACATAATTAAAAATAT
1 TACATAATTAAAAACAT
* * *
31437665 TACATAAGTCTATGAATCAC
1 TACATAA-T-TA-AAAACAT
*
31437685 TACATAATTAAAAATAT
1 TACATAATTAAAAACAT
** * *
31437702 TACATAAGTCTTTGAATCAC
1 TACATAA---TTAAAAACAT
31437722 TACATAATTAAAAACAT
1 TACATAATTAAAAACAT
31437739 TACATAA
1 TACATAA
31437746 GTCTTGAAAT
Statistics
Matches: 83, Mismatches: 26, Indels: 18
0.65 0.20 0.14
Matches are distributed among these distances:
17 42 0.51
18 3 0.04
19 3 0.04
20 35 0.42
ACGTcount: A:0.49, C:0.14, G:0.04, T:0.33
Consensus pattern (17 bp):
TACATAATTAAAAACAT
Found at i:31437653 original size:20 final size:20
Alignment explanation
Indices: 31437603--31437728 Score: 90
Period size: 17 Copynumber: 6.8 Consensus size: 20
31437593 TTACTCGAAT
31437603 TGAATCACTACATAA-T-TA
1 TGAATCACTACATAAGTCTA
* * * *
31437621 -AAAACATTACATAAGTCTT
1 TGAATCACTACATAAGTCTA
31437640 TGAATCACTACATAA-T-TA
1 TGAATCACTACATAAGTCTA
** *
31437658 AAAAT-ATTACATAAGTCTA
1 TGAATCACTACATAAGTCTA
31437677 TGAATCACTACATAA-T-TA
1 TGAATCACTACATAAGTCTA
** * *
31437695 AAAAT-ATTACATAAGTCTT
1 TGAATCACTACATAAGTCTA
31437714 TGAATCACTACATAA
1 TGAATCACTACATAA
31437729 TTAAAAACAT
Statistics
Matches: 78, Mismatches: 21, Indels: 16
0.68 0.18 0.14
Matches are distributed among these distances:
17 27 0.35
18 12 0.15
19 12 0.15
20 27 0.35
ACGTcount: A:0.47, C:0.15, G:0.06, T:0.33
Consensus pattern (20 bp):
TGAATCACTACATAAGTCTA
Found at i:31437764 original size:74 final size:74
Alignment explanation
Indices: 31437603--31437767 Score: 262
Period size: 74 Copynumber: 2.2 Consensus size: 74
31437593 TTACTCGAAT
* *
31437603 TGAATCACTACATAATTAAAAACATTACATAAGTCTTTGAATCACTACATAATTAAAAATATTAC
1 TGAATAACTACATAATTAAAAACATTACATAAGTCTTTGAATCACTACATAATTAAAAACATTAC
31437668 ATAAGTCTA
66 ATAAGTCTA
* *
31437677 TGAATCACTACATAATTAAAAATATTACATAAGTCTTTGAATCACTACATAATTAAAAACATTAC
1 TGAATAACTACATAATTAAAAACATTACATAAGTCTTTGAATCACTACATAATTAAAAACATTAC
31437742 ATAAGTCT-
66 ATAAGTCTA
31437750 TGAAATTAAC-ACATAATT
1 TG-AA-TAACTACATAATT
31437768 GAAATGTAAG
Statistics
Matches: 86, Mismatches: 3, Indels: 4
0.92 0.03 0.04
Matches are distributed among these distances:
73 2 0.02
74 81 0.94
75 3 0.03
ACGTcount: A:0.47, C:0.15, G:0.05, T:0.33
Consensus pattern (74 bp):
TGAATAACTACATAATTAAAAACATTACATAAGTCTTTGAATCACTACATAATTAAAAACATTAC
ATAAGTCTA
Found at i:31437767 original size:37 final size:37
Alignment explanation
Indices: 31437602--31437750 Score: 271
Period size: 37 Copynumber: 4.0 Consensus size: 37
31437592 ATTACTCGAA
31437602 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
*
31437639 TTGAATCACTACATAATTAAAAATATTACATAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
* *
31437676 ATGAATCACTACATAATTAAAAATATTACATAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
31437713 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
31437750 T
1 T
31437751 GAAATTAACA
Statistics
Matches: 108, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 108 1.00
ACGTcount: A:0.46, C:0.15, G:0.05, T:0.34
Consensus pattern (37 bp):
TTGAATCACTACATAATTAAAAACATTACATAAGTCT
Found at i:31448387 original size:46 final size:46
Alignment explanation
Indices: 31448331--31448504 Score: 194
Period size: 46 Copynumber: 3.7 Consensus size: 46
31448321 ACTTGTGTGT
* * *
31448331 GCTAGTGTAAGACATGTCTGGAACATGAATCGGCCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTACGAGA
* *
31448377 GCCAGTGTAAGACCATGTCTGGGACATGGCATC-G--ACATTGAGGCGAGT
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATT-A--CGAGA
* **
31448425 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGACGTA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTACG-AGA
31448471 GCTAGTGTAAGACATGTCTGGGACATGCATCGGC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGC
31448505 TACGAAATGT
Statistics
Matches: 109, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
45 5 0.05
46 53 0.49
47 30 0.28
48 19 0.17
49 2 0.02
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTACGAGA
Found at i:31450123 original size:39 final size:39
Alignment explanation
Indices: 31450080--31450158 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
31450070 AAAAAAACTG
*
31450080 ATCCCACTCCCCCATGCTACTTTGTTTTATTATTAATTA
1 ATCCCACTCCCCCATGCCACTTTGTTTTATTATTAATTA
31450119 ATCCCACTCCCCCATGCCACTTTGTTTTATTATTAATTA
1 ATCCCACTCCCCCATGCCACTTTGTTTTATTATTAATTA
31450158 A
1 A
31450159 AACCATATTT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.24, C:0.29, G:0.05, T:0.42
Consensus pattern (39 bp):
ATCCCACTCCCCCATGCCACTTTGTTTTATTATTAATTA
Found at i:31450202 original size:15 final size:16
Alignment explanation
Indices: 31450176--31450205 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
31450166 TTTTATTTCT
31450176 CTTTTATAAAAAAAAC
1 CTTTTATAAAAAAAAC
31450192 CTTTT-TAAAAAAAA
1 CTTTTATAAAAAAAA
31450206 AACAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.57, C:0.10, G:0.00, T:0.33
Consensus pattern (16 bp):
CTTTTATAAAAAAAAC
Found at i:31464775 original size:20 final size:20
Alignment explanation
Indices: 31464731--31464775 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
31464721 TTTATAATTT
* *
31464731 TAAAAAAATATTAATTATTA
1 TAAAAAAATATTAAGTATGA
*
31464751 TAAAAAAGTATT-AGTATGA
1 TAAAAAAATATTAAGTATGA
31464770 TAAAAA
1 TAAAAA
31464776 TAATTTCTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 11 0.50
20 11 0.50
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (20 bp):
TAAAAAAATATTAAGTATGA
Found at i:31468694 original size:25 final size:25
Alignment explanation
Indices: 31468665--31468712 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
31468655 CATAAATGTA
*
31468665 GCTCTT-TATGAGGGTCCTGATATAG
1 GCTCTTCT-TGAGCGTCCTGATATAG
*
31468690 GCTCTTCTTGAGCTTCCTGATAT
1 GCTCTTCTTGAGCGTCCTGATAT
31468713 GACTCGCTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 19 0.95
26 1 0.05
ACGTcount: A:0.17, C:0.21, G:0.23, T:0.40
Consensus pattern (25 bp):
GCTCTTCTTGAGCGTCCTGATATAG
Found at i:31471816 original size:50 final size:50
Alignment explanation
Indices: 31471744--31471981 Score: 334
Period size: 50 Copynumber: 4.8 Consensus size: 50
31471734 ACATTGAAGT
* * *
31471744 CGATGCCATGTTCCAGATATGGTCTTACACTGGCTCTCATATATCGAGAC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATATCGAGAC
* * *
31471794 TGATTCCATGTCCCAAACATGGTCTTGCACTGGCTCTCATATATCGAGAC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATATCGAGAC
* *
31471844 CGATGCCAAGTCCCAGACATGGTCTTACACTGGCTCTCATATATCGAGAC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATATCGAGAC
* * * * *
31471894 TGATGCCATTTCCCAAACATGGTCTTACACTGGCTCTCATTTGTC-AGTGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATATCGAG-AC
*
31471944 CGATGCCATGTCCCAAACATGGTCTTGCACTGGCTCTC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTC
31471982 GTAATGTGGC
Statistics
Matches: 166, Mismatches: 21, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
49 2 0.01
50 164 0.99
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (50 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATATCGAGAC
Found at i:31471908 original size:100 final size:100
Alignment explanation
Indices: 31471744--31472016 Score: 367
Period size: 100 Copynumber: 2.8 Consensus size: 100
31471734 ACATTGAAGT
* * *
31471744 CGATGCCATGTTCCAGATATGGTCTTACACTGGCTCTCATATATCGAGACTGATTCCATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCGAGACTGATGCCATGTCCCA
*
31471809 AACATGGTCTTGCACTGGCTCTCATATATCGAG-AC
66 AACATGGTCTTACACTGGCTCTCATATATC-AGTAC
* *
31471844 CGATGCCAAGTCCCAGACATGGTCTTACACTGGCTCTCATATATCGAGACTGATGCCATTTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCGAGACTGATGCCATGTCCCA
* * *
31471909 AACATGGTCTTACACTGGCTCTCATTTGTCAGTGC
66 AACATGGTCTTACACTGGCTCTCATATATCAGTAC
* * * * *
31471944 CGATGCCATGTCCCAAACATGGTCTTGCACTGGCTCTCGTA-AT-GTGGCTGATG-CATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCGAGACTGATGCCATGTCCCA
*
31472006 GACAT-GTCTTA
66 AACATGGTCTTA
31472017 TAGTAGCACA
Statistics
Matches: 155, Mismatches: 17, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
96 6 0.04
97 12 0.08
98 8 0.05
99 4 0.03
100 125 0.81
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (100 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCGAGACTGATGCCATGTCCCA
AACATGGTCTTACACTGGCTCTCATATATCAGTAC
Found at i:31479533 original size:48 final size:49
Alignment explanation
Indices: 31479462--31479677 Score: 152
Period size: 50 Copynumber: 4.6 Consensus size: 49
31479452 AGATGCCAAC
* * *
31479462 GCCATATCCTCAG-CATGGTCTTACATTGG-CTCATACATCGA-ATTCGAT
1 GCCATGTCC-CAGACATGGTCTTACACTGGCCTCATACATCGAGA-CCGAT
** *
31479510 GCCATGTCTGAGACATGGTCTTACACTGGCTCTCATATATCGAGACCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGGC-CTCATACATCGAGACCGAT
* ** * *
31479560 GCCATGTCCCAGACATGGTTTTACACT--AATACAT--ATCAAG-CTGAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCCT-CATACATCGAGACCGAT
* * *
31479605 GCTATGTCCCAAACATGGTCTTACACTGGCTCTCATA-AT-GTAG-CTGAT
1 GCCATGTCCCAGACATGGTCTTACACTGGC-CTCATACATCG-AGACCGAT
*
31479653 G-CATGTCCCATACAT-GTCTTACACT
1 GCCATGTCCCAGACATGGTCTTACACT
31479678 AGCACACATA
Statistics
Matches: 137, Mismatches: 21, Indels: 22
0.76 0.12 0.12
Matches are distributed among these distances:
45 28 0.20
46 15 0.11
47 18 0.13
48 36 0.26
50 39 0.28
51 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (49 bp):
GCCATGTCCCAGACATGGTCTTACACTGGCCTCATACATCGAGACCGAT
Found at i:31486719 original size:53 final size:53
Alignment explanation
Indices: 31486637--31486787 Score: 194
Period size: 53 Copynumber: 2.8 Consensus size: 53
31486627 CTTTCCTTTT
* * *
31486637 TAAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTA
1 TAAACTTACCATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTA
* * * * * *
31486690 TGAACTCACCATTGTCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTG
1 TAAACTTACCATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTA
* *
31486743 TAACACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATC
1 TAA-ACTTACCATTGCCATGCCTTGGCATGGTCTTACATGGTATC
31486788 ATTAAACCCT
Statistics
Matches: 81, Mismatches: 16, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
53 46 0.57
54 35 0.43
ACGTcount: A:0.20, C:0.26, G:0.18, T:0.36
Consensus pattern (53 bp):
TAAACTTACCATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTA
Found at i:31493446 original size:46 final size:46
Alignment explanation
Indices: 31493393--31493519 Score: 209
Period size: 46 Copynumber: 2.8 Consensus size: 46
31493383 TATTTGGGCA
*
31493393 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
31493439 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
31493485 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTAT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT
31493520 AGGCGGGTTA
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 75 1.00
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:31506486 original size:50 final size:50
Alignment explanation
Indices: 31506360--31506533 Score: 206
Period size: 50 Copynumber: 3.5 Consensus size: 50
31506350 TGAGGTCATG
** * * *
31506360 TGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGATAACTTCGATCACA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA-TTAGGTCACA
* * ** *
31506411 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTAGGTCACA
* * * *
31506461 TGTGTAGTACTAAGTGCAGGCTACTATATGTACCGGATAATT-GGCCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTAGGTCACA
31506510 TGTGTAGTACTAAGTGCAGGCTAC
1 TGTGTAGTACTAAGTGCAGGCTAC
31506534 CATACGTACC
Statistics
Matches: 104, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
49 28 0.27
50 43 0.41
51 33 0.32
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTAGGTCACA
Found at i:31506540 original size:101 final size:101
Alignment explanation
Indices: 31506352--31506533 Score: 278
Period size: 101 Copynumber: 1.8 Consensus size: 101
31506342 ATCTATTGTG
* * *
31506352 AGGTCATGTGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGATAACTTCGATCACATGTGTA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATACATACCCGATAACTTCGACCACATGTGTA
31506417 GTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
66 GTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
** * * *
31506453 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATATGTACCGGATAA-TT-GGCCGCATGTGTA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATACATACCCGATAACTTCGACCACATGTGTA
31506516 GTACTAAGTGCAGGCTAC
66 GTACTAAGTGCAGGCTAC
31506534 CATACGTACC
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
99 28 0.38
100 2 0.03
101 43 0.59
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (101 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATACATACCCGATAACTTCGACCACATGTGTA
GTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
Found at i:31511583 original size:30 final size:30
Alignment explanation
Indices: 31511548--31511604 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
31511538 TTTACGAGCC
31511548 TAGGGGCAAAAA-TATAATTTTGACAAAGTT
1 TAGGGG-AAAAATTATAATTTTGACAAAGTT
* *
31511578 TAGGGGAAAAATTGTAATTTTGCCAAA
1 TAGGGGAAAAATTATAATTTTGACAAA
31511605 ATATGATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.42, C:0.07, G:0.21, T:0.30
Consensus pattern (30 bp):
TAGGGGAAAAATTATAATTTTGACAAAGTT
Found at i:31512379 original size:50 final size:49
Alignment explanation
Indices: 31512209--31512440 Score: 277
Period size: 49 Copynumber: 4.7 Consensus size: 49
31512199 TCTATTGTGA
* *
31512209 GGTCACGTGTGTAGTACTAAGTGCAGGCTATTACGTGTACCGGATAATT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * ** *
31512258 GGTCGCATGTGTAGTACTAAATGCAGGCTACTATGCATACCCGATAACTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * **
31512308 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
31512358 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
31512408 GGTCGCATGTGTAGTACTAAGTGTC-GGCTACTA
1 GGTCACGTGTGTAGTACTAAGTG-CAGGCTACTA
31512441 TGCATACCAG
Statistics
Matches: 153, Mismatches: 27, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
49 68 0.44
50 49 0.32
51 36 0.24
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (49 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:31512453 original size:99 final size:100
Alignment explanation
Indices: 31512211--31512454 Score: 255
Period size: 100 Copynumber: 2.5 Consensus size: 100
31512201 TATTGTGAGG
* * ** * ** * *
31512211 TCACGTGTGTAGTACTAAGTGCAGGCTATTACGTGTACCGGATAATT-GGTCGCATGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGCATACCAGATGGTTAGGTCACGTGTGTAGTAC
*
31512275 TAAATGCAGGCTACTATGCATACCCGATAACTTCGA
66 TAAATGCAGGCTACTATG-ATACCAGATAACTTCGA
* ** *
31512311 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGCATACCAGATGGTTAGGTCACGTGTGTAGTAC
* *
31512376 TAAGTGCAGGCTACTACATG-TACCAGATAA-TT-GG
66 TAAATGCAGGCTACT--ATGATACCAGATAACTTCGA
* *
31512410 TCGCATGTGTAGTACTAAGTGTC-GGCTACTATGCATACCAGATGG
1 TCACATGTGTAGTACTAAGTG-CAGGCTACTACGCATACCAGATGG
31512455 CCTTGTCTAC
Statistics
Matches: 124, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
99 38 0.31
100 45 0.36
101 38 0.31
103 3 0.02
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (100 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGCATACCAGATGGTTAGGTCACGTGTGTAGTAC
TAAATGCAGGCTACTATGATACCAGATAACTTCGA
Found at i:31519193 original size:12 final size:12
Alignment explanation
Indices: 31519173--31519210 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
31519163 AAAAATTGTC
31519173 AAAATTGAATTA
1 AAAATTGAATTA
*
31519185 AAAACTGAA-TA
1 AAAATTGAATTA
31519196 AAATATTGAATTA
1 AAA-ATTGAATTA
31519209 AA
1 AA
31519211 TCTTAATGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
11 5 0.23
12 13 0.59
13 4 0.18
ACGTcount: A:0.61, C:0.03, G:0.08, T:0.29
Consensus pattern (12 bp):
AAAATTGAATTA
Found at i:31520313 original size:55 final size:55
Alignment explanation
Indices: 31520248--31520371 Score: 248
Period size: 55 Copynumber: 2.3 Consensus size: 55
31520238 CATGAGTAGA
31520248 CCACACGGGCGTGTCCCATAGCCATGTCCCAAAGTCAGTATTGAACATGGGCAGT
1 CCACACGGGCGTGTCCCATAGCCATGTCCCAAAGTCAGTATTGAACATGGGCAGT
31520303 CCACACGGGCGTGTCCCATAGCCATGTCCCAAAGTCAGTATTGAACATGGGCAGT
1 CCACACGGGCGTGTCCCATAGCCATGTCCCAAAGTCAGTATTGAACATGGGCAGT
31520358 CCACACGGGCGTGT
1 CCACACGGGCGTGT
31520372 GACATGGTTG
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 69 1.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (55 bp):
CCACACGGGCGTGTCCCATAGCCATGTCCCAAAGTCAGTATTGAACATGGGCAGT
Found at i:31522381 original size:11 final size:12
Alignment explanation
Indices: 31522365--31522393 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
31522355 TCTTCAAATG
31522365 AAAAAACTC-TA
1 AAAAAACTCATA
31522376 AAAAAACTCATA
1 AAAAAACTCATA
31522388 AAAAAA
1 AAAAAA
31522394 AGGTATATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 9 0.53
12 8 0.47
ACGTcount: A:0.72, C:0.14, G:0.00, T:0.14
Consensus pattern (12 bp):
AAAAAACTCATA
Found at i:31523367 original size:25 final size:25
Alignment explanation
Indices: 31523307--31523367 Score: 59
Period size: 25 Copynumber: 2.4 Consensus size: 25
31523297 ATTCTAAAAA
* * *
31523307 TATAAAAATCTAAAAAATTATATATTT
1 TATAAAAA--TAAAAAATTACAAAATT
* *
31523334 TAGAGAAATAAAAAATTACAAAATT
1 TATAAAAATAAAAAATTACAAAATT
31523359 TATAAAAAT
1 TATAAAAAT
31523368 TAATACATAA
Statistics
Matches: 27, Mismatches: 7, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
25 21 0.78
27 6 0.22
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (25 bp):
TATAAAAATAAAAAATTACAAAATT
Found at i:31535530 original size:23 final size:24
Alignment explanation
Indices: 31535476--31535530 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
31535466 CAGCTCTTCG
* *
31535476 TGAACGTCCTGATATAAGCTCTTA
1 TGAACTTCCTGATATAAGCTCCTA
*
31535500 TGAGCTTCCTGATAT-AGCTCGCT-
1 TGAACTTCCTGATATAAGCTC-CTA
31535523 TGAACTTC
1 TGAACTTC
31535531 TTGTTATGCT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
23 12 0.46
24 14 0.54
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.35
Consensus pattern (24 bp):
TGAACTTCCTGATATAAGCTCCTA
Found at i:31541799 original size:23 final size:23
Alignment explanation
Indices: 31541769--31541819 Score: 93
Period size: 23 Copynumber: 2.2 Consensus size: 23
31541759 GGTTATGCCT
31541769 CACACGCCCGTGTGAAGGCAAAG
1 CACACGCCCGTGTGAAGGCAAAG
*
31541792 CACACGCCCGTGTGATGGCAAAG
1 CACACGCCCGTGTGAAGGCAAAG
31541815 CACAC
1 CACAC
31541820 AACCATGTGC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.29, C:0.33, G:0.27, T:0.10
Consensus pattern (23 bp):
CACACGCCCGTGTGAAGGCAAAG
Found at i:31541828 original size:23 final size:23
Alignment explanation
Indices: 31541779--31541828 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
31541769 CACACGCCCG
** *
31541779 TGTGAAGGCAAAGCACACGCCCG
1 TGTGAAGGCAAAGCACACAACCA
*
31541802 TGTGATGGCAAAGCACACAACCA
1 TGTGAAGGCAAAGCACACAACCA
31541825 TGTG
1 TGTG
31541829 CTTGGGGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.32, C:0.26, G:0.28, T:0.14
Consensus pattern (23 bp):
TGTGAAGGCAAAGCACACAACCA
Found at i:31554358 original size:48 final size:48
Alignment explanation
Indices: 31554184--31554656 Score: 453
Period size: 48 Copynumber: 9.7 Consensus size: 48
31554174 GTAAGATCCT
* * * *
31554184 GATGCCATGTTCCGAACATGGTCTTACACTGGCTCTCATATATCGGTGCT
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTC--ATATCGATGCC
* * * ** * *
31554234 GATGCCATGTTCCAAACATAGTCTTACAGTAGCCCAGATGTCGAGGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCGATGCC
* * * * * * *
31554282 GATGCCGTGTCCCAGACATGGTCATACACTAGCTCTCATCTCAATGTC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCGATGCC
* *
31554330 GATGCCATGTTCCAAATATGGTCTTACACTAGCTCTTATATATCGACT-CC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTC-T-CATATCGA-TGCC
* * * ** *
31554380 GATGCCATGTTCCAAACATGGTCTTACGCTAGCCCACATGCCGAGGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCGATGCC
* * * * *
31554428 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAACGCT
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCGATGCC
* * * *
31554476 GATGCCATGTTCGAAACATGGTCTTACATTGGCTCTCATATATCGGTGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTC--ATATCGATGCC
* * * * * *
31554526 GATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATGTTGAGGCT
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCGATGCC
* * *
31554574 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCGATGCC
* * *
31554622 GATTCCATGTTCCAAACATGGTTTTACACTGGCTC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTC
31554657 GTATAACCCT
Statistics
Matches: 333, Mismatches: 84, Indels: 14
0.77 0.19 0.03
Matches are distributed among these distances:
48 224 0.67
49 1 0.00
50 107 0.32
51 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (48 bp):
GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCGATGCC
Found at i:31554382 original size:98 final size:97
Alignment explanation
Indices: 31554184--31554656 Score: 450
Period size: 98 Copynumber: 4.9 Consensus size: 97
31554174 GTAAGATCCT
* * * ** *
31554184 GATGCCATGTTCCGAACATGGTCTTACACTGGCTCTCATATATCGGTGCTGATGCCATGTTCCAA
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTC--ATATCAATGCCGATGCCATGTTCCAA
* * * * *
31554249 ACATAGTCTTACAGTAGC-CCAGATGTCGAGGCC
64 ACATGGTCTTACACTAGCTCCATATATCGACGCC
* * * * * *
31554282 GATGCCGTGTCCCAGACATGGTCATACACTAGCTCTCATCTCAATGTCGATGCCATGTTCCAAAT
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTTCCAAAC
* *
31554347 ATGGTCTTACACTAGCTCTTATATATCGACTCC
66 ATGGTCTTACACTAGCTC-CATATATCGACGCC
* * * * ** * * * *
31554380 GATGCCATGTTCCAAACATGGTCTTACGCTAGCCCACATGCCGAGGCCGATGCCATGTCCCAGAC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTTCCAAAC
* *
31554445 ATGGTCTTACACTAGCT-C-TCATATCAACGCT
66 ATGGTCTTACACTAGCTCCAT-ATATCGACGCC
* * * * **
31554476 GATGCCATGTTCGAAACATGGTCTTACATTGGCTCTCATATATCGGTGCCGATGCCATGTTCCAA
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTC--ATATCAATGCCGATGCCATGTTCCAA
* * * * *
31554541 ACATGGTCTTACACTAGC-CCACATGTTGAGGCT
64 ACATGGTCTTACACTAGCTCCATATATCGACGCC
* *
31554574 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCCGATTCCATGTTCCAAAC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTTCCAAAC
* *
31554639 ATGGTTTTACACTGGCTC
66 ATGGTCTTACACTAGCTC
31554657 GTATAACCCT
Statistics
Matches: 302, Mismatches: 65, Indels: 17
0.79 0.17 0.04
Matches are distributed among these distances:
95 1 0.00
96 114 0.38
97 2 0.01
98 185 0.61
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (97 bp):
GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTTCCAAAC
ATGGTCTTACACTAGCTCCATATATCGACGCC
Found at i:31554448 original size:146 final size:145
Alignment explanation
Indices: 31554184--31554656 Score: 707
Period size: 146 Copynumber: 3.2 Consensus size: 145
31554174 GTAAGATCCT
* *
31554184 GATGCCATGTTCCGAACATGGTCTTACACTGGCTCTCATATATCGGTGCTGATGCCATGTTCCAA
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATATCGGTGCCGATGCCATGTTCCAA
* * * *
31554249 ACATAGTCTTACAG-TAGCCCAGATGTCGAGGCCGATGCCGTGTCCCAGACATGGTCATACACTA
66 ACATGGTCTTAC-GCTAGCCCACATGTCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTA
*
31554313 GCTCTCATCTCAATGTC
130 GCTCTCATATCAATG-C
* * * *
31554330 GATGCCATGTTCCAAATATGGTCTTACACTAGCTCTTATATATCGACT-CCGATGCCATGTTCCA
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATATCG-GTGCCGATGCCATGTTCCA
*
31554394 AACATGGTCTTACGCTAGCCCACATGCCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTA
65 AACATGGTCTTACGCTAGCCCACATGTCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTA
*
31554459 GCTCTCATATCAACGC
130 GCTCTCATATCAATGC
* *
31554475 TGATGCCATGTTCGAAACATGGTCTTACATTGGCTCTCATATATCGGTGCCGATGCCATGTTCCA
1 -GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATATCGGTGCCGATGCCATGTTCCA
* * *
31554540 AACATGGTCTTACACTAGCCCACATGTTGAGGCTGATGCCATGTCCCAGACATGGTCTTACACTA
65 AACATGGTCTTACGCTAGCCCACATGTCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTA
31554605 GCTCTCATATCAATGCC
130 GCTCTCATATCAATG-C
* *
31554622 GATTCCATGTTCCAAACATGGTTTTACACTGGCTC
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTC
31554657 GTATAACCCT
Statistics
Matches: 294, Mismatches: 28, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
145 3 0.01
146 289 0.98
147 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (145 bp):
GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATATCGGTGCCGATGCCATGTTCCAA
ACATGGTCTTACGCTAGCCCACATGTCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAG
CTCTCATATCAATGC
Found at i:31559236 original size:48 final size:48
Alignment explanation
Indices: 31559172--31559495 Score: 348
Period size: 48 Copynumber: 6.7 Consensus size: 48
31559162 GGTTATGTGT
*
31559172 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGA
1 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATCGTTATGA
* * **
31559220 GAGCTAGTGTAAGACCATGTCTAGG-ACATGGCATCGGCATCAATAT-A
1 GAGCCAGTGTAAGACCATGT-TTGGAACATGGCATCGGCATCGTTATGA
* *
31559267 TGAGCCAATGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGA
1 -GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATCGTTATGA
* * * * ** *
31559316 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-GCCTCAATATGC
1 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATCGTTATGA
* * *
31559363 GAGCAAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGT
1 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATCGTTATGA
* * * * * * *
31559411 GAGCCAATATAAGACCATGTCTGGGACATAGCATTGGCACCGATGTATGA
1 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATCG-T-TATGA
* * *
31559461 CAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATC
31559496 AAAATTTTAC
Statistics
Matches: 226, Mismatches: 43, Indels: 12
0.80 0.15 0.04
Matches are distributed among these distances:
47 43 0.19
48 144 0.64
49 5 0.02
50 34 0.15
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.25
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATCGTTATGA
Found at i:31559335 original size:96 final size:96
Alignment explanation
Indices: 31559171--31559495 Score: 456
Period size: 96 Copynumber: 3.4 Consensus size: 96
31559161 GGGTTATGTG
*
31559171 TGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAAGACC
1 TGAGCCAATGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAAGACC
*
31559236 ATGTCTAGGACATGGCATCGGCATCAATATA
66 ATGTCTGGGACATGGCATCGGCATCAATATA
31559267 TGAGCCAATGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAAGACC
1 TGAGCCAATGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAAGACC
* *
31559332 ATGTCTGGGACATGGCATC-GCCTCAATATG
66 ATGTCTGGGACATGGCATCGGCATCAATATA
* * * * *
31559362 CGAG-CAAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGTGAGCCAATATAAGAC
1 TGAGCCAA-TGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAAGAC
* * * * *
31559426 CATGTCTGGGACATAGCATTGGCACCGATGTA
65 CATGTCTGGGACATGGCATCGGCATCAATATA
* * *
31559458 TGACAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 TG--AGCCAATGTAAGACCATGTTTGGAACATGGCATC
31559496 AAAATTTTAC
Statistics
Matches: 204, Mismatches: 20, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
94 3 0.01
95 82 0.40
96 89 0.44
98 28 0.14
99 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.25
Consensus pattern (96 bp):
TGAGCCAATGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAAGACC
ATGTCTGGGACATGGCATCGGCATCAATATA
Found at i:31559424 original size:95 final size:96
Alignment explanation
Indices: 31559172--31559495 Score: 447
Period size: 95 Copynumber: 3.4 Consensus size: 96
31559162 GGTTATGTGT
*
31559172 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAAGACCA
1 GAGCAAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAAGACCA
* *
31559237 TGTCTAGGACATGGCATCGGCATCAATATAT
66 TGTCTGGGACATGGCATCGGCATCAATATAC
31559268 GAGCCAA-TGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAAGACC
1 GAG-CAAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAAGACC
* *
31559332 ATGTCTGGGACATGGCATC-GCCTCAATATGC
65 ATGTCTGGGACATGGCATCGGCATCAATATAC
* * * *
31559363 GAGCAAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGTGAGCCAATATAAGACCA
1 GAGCAAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAAGACCA
* * * *
31559428 TGTCTGGGACATAGCATTGGCACCGATGTATGAC
66 TGTCTGGGACATGGCATCGGCATC-A-ATAT-AC
* * *
31559462 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 GAGCAAGTGTAAGACCATGTTTGGAACATGGCATC
31559496 AAAATTTTAC
Statistics
Matches: 204, Mismatches: 18, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
94 3 0.01
95 82 0.40
96 81 0.40
97 3 0.01
98 34 0.17
99 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.25
Consensus pattern (96 bp):
GAGCAAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAAGACCA
TGTCTGGGACATGGCATCGGCATCAATATAC
Found at i:31561984 original size:20 final size:21
Alignment explanation
Indices: 31561959--31561997 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
31561949 TCCTTAAAAT
31561959 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
31561979 AGGGCAACACGCCCGTGTG
1 AGGGCAACACGCCCGTGTG
31561998 ACCAACTCGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.21, C:0.31, G:0.38, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:31563300 original size:46 final size:44
Alignment explanation
Indices: 31563226--31563386 Score: 141
Period size: 46 Copynumber: 3.5 Consensus size: 44
31563216 CGATGCCATC
*
31563226 TCCCAGACATGATCTTACACT-GACACATCTCGTAGCCGATGCTTG
1 TCCCAGACATG-TCTTACACTGGATACATCTC-TAGCCGATGCTTG
*
31563271 TCCCAGACATGTCTTACACTGGATTACATCT-TAAGGCCGATGGTTG
1 TCCCAGACATGTCTTACACTGGA-TACATCTCT-A-GCCGATGCTTG
* * * *
31563317 TCCTAGACATGTCTTACACTAGCACT-CGTCTCAATA-CCGATGCCATG
1 TCCCAGACATGTCTTACACT-GGA-TACATCTC--TAGCCGATG-CTTG
31563364 TCCCAGACATGGTCTTACACTGG
1 TCCCAGACAT-GTCTTACACTGG
31563387 CTCACACCAA
Statistics
Matches: 96, Mismatches: 10, Indels: 18
0.77 0.08 0.15
Matches are distributed among these distances:
44 10 0.10
45 14 0.15
46 45 0.47
47 15 0.16
48 11 0.11
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (44 bp):
TCCCAGACATGTCTTACACTGGATACATCTCTAGCCGATGCTTG
Found at i:31566733 original size:16 final size:16
Alignment explanation
Indices: 31566712--31566761 Score: 54
Period size: 16 Copynumber: 3.4 Consensus size: 16
31566702 ATAAGGGACA
31566712 ATATGATTAGTTTTAG
1 ATATGATTAGTTTTAG
**
31566728 ATATGAACAG---TA-
1 ATATGATTAGTTTTAG
31566740 ATATGATTAGTTTTAG
1 ATATGATTAGTTTTAG
31566756 ATATGA
1 ATATGA
31566762 ACAGTAAATG
Statistics
Matches: 26, Mismatches: 4, Indels: 8
0.68 0.11 0.21
Matches are distributed among these distances:
12 8 0.31
13 2 0.08
15 2 0.08
16 14 0.54
ACGTcount: A:0.38, C:0.02, G:0.18, T:0.42
Consensus pattern (16 bp):
ATATGATTAGTTTTAG
Found at i:31566743 original size:28 final size:28
Alignment explanation
Indices: 31566711--31566772 Score: 117
Period size: 28 Copynumber: 2.2 Consensus size: 28
31566701 TATAAGGGAC
31566711 AATATGATTAGTTTTAGATATGAACAGT
1 AATATGATTAGTTTTAGATATGAACAGT
31566739 AATATGATTAGTTTTAGATATGAACAGT
1 AATATGATTAGTTTTAGATATGAACAGT
31566767 AA-ATGA
1 AATATGA
31566773 CATGAACTAC
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 4 0.12
28 30 0.88
ACGTcount: A:0.42, C:0.03, G:0.18, T:0.37
Consensus pattern (28 bp):
AATATGATTAGTTTTAGATATGAACAGT
Found at i:31568582 original size:15 final size:14
Alignment explanation
Indices: 31568549--31568575 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
31568539 AAAAATATAT
31568549 AAATTTTAAAAATA
1 AAATTTTAAAAATA
31568563 AAATTTTAAAAAT
1 AAATTTTAAAAAT
31568576 GATAATTGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (14 bp):
AAATTTTAAAAATA
Found at i:31568828 original size:26 final size:25
Alignment explanation
Indices: 31568798--31568849 Score: 63
Period size: 25 Copynumber: 2.0 Consensus size: 25
31568788 GCATTCAAAT
31568798 ATTTAATATTATAAT-TTTCTT-TTTTA
1 ATTTAA-ATT-TAATGTTT-TTATTTTA
31568824 ATTTAAATTTAATGTTTTTATTTTA
1 ATTTAAATTTAATGTTTTTATTTTA
31568849 A
1 A
31568850 ATAAACTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
24 6 0.25
25 12 0.50
26 6 0.25
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (25 bp):
ATTTAAATTTAATGTTTTTATTTTA
Found at i:31569107 original size:7 final size:7
Alignment explanation
Indices: 31569095--31569122 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
31569085 ATTAACAAAA
31569095 AAAATAT
1 AAAATAT
31569102 AAAATAT
1 AAAATAT
31569109 AAAATAT
1 AAAATAT
31569116 AAAATAT
1 AAAATAT
31569123 GAGGAGTGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (7 bp):
AAAATAT
Found at i:31570167 original size:16 final size:15
Alignment explanation
Indices: 31570146--31570175 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
31570136 TTTTTCATCG
31570146 TTTTCTACCTCTTTCA
1 TTTTCTACCT-TTTCA
31570162 TTTTCTACCTTTTC
1 TTTTCTACCTTTTC
31570176 CATCTATTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.10, C:0.30, G:0.00, T:0.60
Consensus pattern (15 bp):
TTTTCTACCTTTTCA
Found at i:31573007 original size:39 final size:39
Alignment explanation
Indices: 31572940--31573031 Score: 105
Period size: 39 Copynumber: 2.4 Consensus size: 39
31572930 TCCCTACCTT
* ** *
31572940 CACTATTTAATTCCTCATTGTAATTTGGTAACTCT-GCCC
1 CACTATTTAGTTCCTCATTACAAGTTGGTAACT-TAGCCC
* * *
31572979 TACTCTTTAGTTCCTCATTACAAGTTGGTATCTTAGCCC
1 CACTATTTAGTTCCTCATTACAAGTTGGTAACTTAGCCC
31573018 CACTATTTAGTTCC
1 CACTATTTAGTTCC
31573032 CTTTCCATAA
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
38 1 0.02
39 42 0.98
ACGTcount: A:0.22, C:0.26, G:0.11, T:0.41
Consensus pattern (39 bp):
CACTATTTAGTTCCTCATTACAAGTTGGTAACTTAGCCC
Found at i:31577347 original size:28 final size:28
Alignment explanation
Indices: 31577307--31577361 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
31577297 AGAGAAGGAA
31577307 GAATTATGCCAAGGCCATGCCACTAAAT
1 GAATTATGCCAAGGCCATGCCACTAAAT
*
31577335 GAATTATGCCAAGGCCATGGCACTAAA
1 GAATTATGCCAAGGCCATGCCACTAAA
31577362 CTAACAGGCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.36, C:0.24, G:0.20, T:0.20
Consensus pattern (28 bp):
GAATTATGCCAAGGCCATGCCACTAAAT
Found at i:31583165 original size:19 final size:20
Alignment explanation
Indices: 31583141--31583178 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
31583131 GGTACCACCA
31583141 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
31583160 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
31583179 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:31583473 original size:46 final size:46
Alignment explanation
Indices: 31583406--31583527 Score: 199
Period size: 46 Copynumber: 2.7 Consensus size: 46
31583396 CGCCCCTAAG
* * *
31583406 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAA
* *
31583452 TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAA
31583498 TGAACTCGGACTCAACTCAACGAGTTCGGA
1 TGAACTCGGACTCAACTCAACGAGTTCGGA
31583528 TGCTCAACCA
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 71 1.00
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAA
Found at i:31583546 original size:46 final size:45
Alignment explanation
Indices: 31583404--31583546 Score: 137
Period size: 46 Copynumber: 3.1 Consensus size: 45
31583394 CCCGCCCCTA
* ** *
31583404 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC-GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCACCATCC-T
* ** **
31583449 AAATGAACTCGGACTCAACTCAACGAGTTCGGACATT-TGCATCCAT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCACCATCC-T
*
31583495 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTC-ACCATCCT
31583542 AGTGA
1 AGTGA
31583547 CATGTCACTT
Statistics
Matches: 84, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
46 78 0.93
47 1 0.01
48 5 0.06
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCACCATCCT
Found at i:31600255 original size:27 final size:27
Alignment explanation
Indices: 31600224--31600401 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
31600214 TAAATTGTAC
*
31600224 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
31600251 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
31600277 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
31600305 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
31600332 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * * *
31600360 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
31600387 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
31600402 GACTTAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:31600285 original size:54 final size:55
Alignment explanation
Indices: 31600224--31600401 Score: 236
Period size: 54 Copynumber: 3.3 Consensus size: 55
31600214 TAAATTGTAC
* **
31600224 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
* * * *
31600279 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
* *
31600332 AGCACTAAGTGTGCGAGTTTGATTATGTGGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGA-TTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
*
31600387 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
31600402 GACTTAATAT
Statistics
Matches: 107, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
53 1 0.01
54 60 0.56
55 46 0.43
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
Found at i:31604345 original size:19 final size:20
Alignment explanation
Indices: 31604321--31604358 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
31604311 GGTACCACCA
31604321 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
31604340 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
31604359 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:31604712 original size:92 final size:92
Alignment explanation
Indices: 31604586--31604754 Score: 286
Period size: 92 Copynumber: 1.8 Consensus size: 92
31604576 GCCCCTAAGT
* *
31604586 GAACTCGGATCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAAC
1 GAACTCGGATCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAAC
31604651 GAGTTCGGATGCCTAGTTACATCTCAC
66 GAGTTCGGATGCCTAGTTACATCTCAC
* *
31604678 GAACTC-GACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGA-TCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
31604742 CGAGTTCGGATGC
65 CGAGTTCGGATGC
31604755 TCAACCATCC
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
91 2 0.03
92 70 0.97
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (92 bp):
GAACTCGGATCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:31604751 original size:46 final size:46
Alignment explanation
Indices: 31604581--31604751 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
31604571 AACCCGCCCC
* * *
31604581 TAAGTGAACTCGGA-TCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
31604626 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
31604674 TCA-CGAACTC-GACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
31604718 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
31604752 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 10, Indels: 21
0.77 0.07 0.15
Matches are distributed among these distances:
41 2 0.02
42 4 0.04
43 2 0.02
44 2 0.02
45 19 0.18
46 61 0.58
47 6 0.06
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:31605209 original size:30 final size:30
Alignment explanation
Indices: 31605175--31605234 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
31605165 ATTTAATACG
31605175 AACTTTAAG-AAAATTACACTTTTGCCCCTA
1 AACTTT-AGCAAAATTACACTTTTGCCCCTA
* *
31605205 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAGCAAAATTACACTTTTGCCCCTA
31605235 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 1 0.04
30 26 0.96
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.37
Consensus pattern (30 bp):
AACTTTAGCAAAATTACACTTTTGCCCCTA
Found at i:31609296 original size:61 final size:62
Alignment explanation
Indices: 31609154--31609296 Score: 152
Period size: 60 Copynumber: 2.3 Consensus size: 62
31609144 TCAAGCTCTA
* *
31609154 CTGGGCCTAAGCCCTATT-CAGAAATCAGAGTTAACTGGGCCTTAGCCCATATTAATATTAAT
1 CTGGGCCT-AGCCCTATTACAGAAATCAGAGTTAACTGGGCCTTAGCCCATATCAATATCAAT
* * * * *
31609216 CTAGGCCATAGCCC-CTTACAG-TATCAGAG-TATACTGGG-CTTAGCCCATATCAGTGTCAAT
1 CTGGGCC-TAGCCCTATTACAGAAATCAGAGTTA-ACTGGGCCTTAGCCCATATCAATATCAAT
31609276 CTGGGCCGTAGCCCTATTACA
1 CTGGGCC-TAGCCCTATTACA
31609297 AGTTGAGATA
Statistics
Matches: 67, Mismatches: 10, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
60 32 0.48
61 20 0.30
62 14 0.21
63 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (62 bp):
CTGGGCCTAGCCCTATTACAGAAATCAGAGTTAACTGGGCCTTAGCCCATATCAATATCAAT
Found at i:31609343 original size:20 final size:20
Alignment explanation
Indices: 31609318--31609363 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
31609308 GTTGGGCCTT
31609318 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
31609338 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
31609357 GCCCATA
1 GCCCATA
31609364 ACAAAATAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:31622498 original size:30 final size:29
Alignment explanation
Indices: 31622462--31622603 Score: 126
Period size: 30 Copynumber: 4.8 Consensus size: 29
31622452 TCCTCTTGAC
31622462 TTAGATAGCCACAGAGGCATCCATACATCA
1 TTAGATAGCCACA-AGGCATCCATACATCA
* *
31622492 TTAGATAGCCACAAGGGAATCCACACATCA
1 TTAGATAGCCACAA-GGCATCCATACATCA
* * *
31622522 TTAGATAGTCACAAAGGCATCC--ACTTGAA
1 TTAGATAGCCAC-AAGGCATCCATACAT-CA
* * **
31622551 TTATATAGCCACAGAAGTGTCCATACATCA
1 TTAGATAGCCACA-AGGCATCCATACATCA
*
31622581 TTAGATAGTCACAAGGGCATCCA
1 TTAGATAGCCACAA-GGCATCCA
31622604 GATTCATACA
Statistics
Matches: 87, Mismatches: 18, Indels: 14
0.73 0.15 0.12
Matches are distributed among these distances:
28 4 0.05
29 18 0.21
30 60 0.69
31 5 0.06
ACGTcount: A:0.37, C:0.24, G:0.17, T:0.22
Consensus pattern (29 bp):
TTAGATAGCCACAAGGCATCCATACATCA
Found at i:31622757 original size:29 final size:31
Alignment explanation
Indices: 31622711--31622812 Score: 102
Period size: 31 Copynumber: 3.3 Consensus size: 31
31622701 ACATAGAACA
*
31622711 ACCACAAAGGCTTCCACATATAACAAGTTAT
1 ACCAAAAAGGCTTCCACATATAACAAGTTAT
* *
31622742 ACCAAAAAGGC-T-CACATATAACACAG-AACA
1 ACCAAAAAGGCTTCCACATATAACA-AGTTA-T
* * *
31622772 ACCACAAAGGCTTCCACATATAACACGTTCT
1 ACCAAAAAGGCTTCCACATATAACAAGTTAT
*
31622803 GCCAAAAAGG
1 ACCAAAAAGG
31622813 ATCACATATA
Statistics
Matches: 56, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
29 12 0.21
30 13 0.23
31 20 0.36
32 11 0.20
ACGTcount: A:0.44, C:0.27, G:0.12, T:0.17
Consensus pattern (31 bp):
ACCAAAAAGGCTTCCACATATAACAAGTTAT
Found at i:31622770 original size:61 final size:61
Alignment explanation
Indices: 31622694--31622823 Score: 206
Period size: 61 Copynumber: 2.1 Consensus size: 61
31622684 ACAAAGGTTT
* * *
31622694 ACATGTAACATAGAACAACCACAAAGGCTTCCACATATAACAAGTTATACCAAAAAGGCTC
1 ACATATAACACAGAACAACCACAAAGGCTTCCACATATAACAAGTTATACCAAAAAGGATC
* * *
31622755 ACATATAACACAGAACAACCACAAAGGCTTCCACATATAACACGTTCTGCCAAAAAGGATC
1 ACATATAACACAGAACAACCACAAAGGCTTCCACATATAACAAGTTATACCAAAAAGGATC
31622816 ACATATAA
1 ACATATAA
31622824 TAGATTTAGT
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
61 63 1.00
ACGTcount: A:0.46, C:0.25, G:0.11, T:0.18
Consensus pattern (61 bp):
ACATATAACACAGAACAACCACAAAGGCTTCCACATATAACAAGTTATACCAAAAAGGATC
Found at i:31622793 original size:32 final size:32
Alignment explanation
Indices: 31622694--31622797 Score: 126
Period size: 32 Copynumber: 3.3 Consensus size: 32
31622684 ACAAAGGTTT
* *
31622694 ACATGTAACATAGAACAACCACAAAGGCTTCC
1 ACATATAACACAGAACAACCACAAAGGCTTCC
* * *
31622726 ACATATAACA-AGTTA-TACCAAAAAGGC-T-C
1 ACATATAACACAG-AACAACCACAAAGGCTTCC
31622755 ACATATAACACAGAACAACCACAAAGGCTTCC
1 ACATATAACACAGAACAACCACAAAGGCTTCC
31622787 ACATATAACAC
1 ACATATAACAC
31622798 GTTCTGCCAA
Statistics
Matches: 60, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
29 12 0.20
30 13 0.22
31 13 0.22
32 22 0.37
ACGTcount: A:0.47, C:0.27, G:0.10, T:0.16
Consensus pattern (32 bp):
ACATATAACACAGAACAACCACAAAGGCTTCC
Found at i:31622819 original size:29 final size:29
Alignment explanation
Indices: 31622725--31622823 Score: 90
Period size: 29 Copynumber: 3.3 Consensus size: 29
31622715 CAAAGGCTTC
* * *
31622725 CACATATAACAAGTTATACCAAAAAGGCT
1 CACATATAACACGTTCTACCAAAAAGGAT
** * * *
31622754 CACATATAACACAGAACAACCACAAAGGCTT
1 CACATATAACAC-GTTCTACCAAAAAGG-AT
*
31622785 CCACATATAACACGTTCTGCCAAAAAGGAT
1 -CACATATAACACGTTCTACCAAAAAGGAT
31622815 CACATATAA
1 CACATATAA
31622824 TAGATTTAGT
Statistics
Matches: 54, Mismatches: 13, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
29 20 0.37
30 11 0.20
31 11 0.20
32 12 0.22
ACGTcount: A:0.46, C:0.25, G:0.10, T:0.18
Consensus pattern (29 bp):
CACATATAACACGTTCTACCAAAAAGGAT
Found at i:31629692 original size:16 final size:16
Alignment explanation
Indices: 31629671--31629716 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
31629661 CGGCAAATCT
* *
31629671 CGAAATGCCGAAAAGC
1 CGAAATGCCAAAAAAC
31629687 CGAAATGCCAAAAAAC
1 CGAAATGCCAAAAAAC
* *
31629703 TGAAATGCTAAAAA
1 CGAAATGCCAAAAA
31629717 GTTAAAAGTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.52, C:0.20, G:0.17, T:0.11
Consensus pattern (16 bp):
CGAAATGCCAAAAAAC
Found at i:31630112 original size:29 final size:29
Alignment explanation
Indices: 31629932--31630110 Score: 279
Period size: 29 Copynumber: 6.2 Consensus size: 29
31629922 ATGAAACCAT
* *
31629932 CCATATGAATGTGATTTGGGCCAAATGGG
1 CCATACGAATGTGATTTGGGCCTAATGGG
31629961 CCATACGAATGTGATTTGGGCCTAATGGG
1 CCATACGAATGTGATTTGGGCCTAATGGG
*
31629990 CCATACAAATGTGATTTGGGCCTAATGGG
1 CCATACGAATGTGATTTGGGCCTAATGGG
31630019 CCATACGAATGTGATTTGGGCCTAATGGG
1 CCATACGAATGTGATTTGGGCCTAATGGG
*
31630048 CCATA-GAAATGTGATTTGGGCCTAGTGGG
1 CCATACG-AATGTGATTTGGGCCTAATGGG
* * *
31630077 CCATATGAATGAGATTTGGGCCTAGTGGG
1 CCATACGAATGTGATTTGGGCCTAATGGG
31630106 CCATA
1 CCATA
31630111 TGCATGTATG
Statistics
Matches: 142, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
28 1 0.01
29 140 0.99
30 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.27
Consensus pattern (29 bp):
CCATACGAATGTGATTTGGGCCTAATGGG
Found at i:31642342 original size:32 final size:32
Alignment explanation
Indices: 31642297--31642361 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
31642287 TGTCAACTAT
31642297 AGTCCAACCGATCGTCTTTTTGAATTTTTTTA
1 AGTCCAACCGATCGTCTTTTTGAATTTTTTTA
*
31642329 AGTCCAACGGATCGTCTTTTTGAATTTTTTTA
1 AGTCCAACCGATCGTCTTTTTGAATTTTTTTA
31642361 A
1 A
31642362 AACTTCGATC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.23, C:0.17, G:0.14, T:0.46
Consensus pattern (32 bp):
AGTCCAACCGATCGTCTTTTTGAATTTTTTTA
Found at i:31652902 original size:40 final size:39
Alignment explanation
Indices: 31652818--31653002 Score: 185
Period size: 40 Copynumber: 4.6 Consensus size: 39
31652808 TCGAATGATG
* * * * *
31652818 TCCGGGCTAAGTCCTGAAGGC-TTTGTGCTAACTGACCATA
1 TCCGGGCTAAGTCC-GAAGGCATTTGTGC-GAGTTACTAAA
* * *
31652858 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
31652898 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
31652937 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* *
31652978 -CCGAGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
31653003 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 34 0.28
40 76 0.62
41 12 0.10
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:31653024 original size:79 final size:79
Alignment explanation
Indices: 31652871--31653035 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
31652861 GGACTAAGAT
* * **
31652871 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGAGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
31652936 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
31652950 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGAGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGAGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
31653013 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
31653029 CCGAAGG
1 CCGAAGG
31653036 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 24 0.33
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGAGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:31661112 original size:79 final size:81
Alignment explanation
Indices: 31660976--31661158 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
31660966 TCGAATGATG
* *
31660976 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
31661040 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
31661055 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
31661117 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
31661135 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
31661159 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:31661174 original size:40 final size:40
Alignment explanation
Indices: 31660977--31661160 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
31660967 CGAATGATGT
* * * *
31660977 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
31661017 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
31661057 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
31661095 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
31661136 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
31661161 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:31661182 original size:79 final size:79
Alignment explanation
Indices: 31661029--31661193 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
31661019 GGACTAAGAT
* **
31661029 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
31661094 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
31661108 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
31661171 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
31661187 CCGAAGG
1 CCGAAGG
31661194 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:31666017 original size:40 final size:42
Alignment explanation
Indices: 31665973--31666066 Score: 104
Period size: 40 Copynumber: 2.3 Consensus size: 42
31665963 ACAGTGCTTA
* *
31665973 GCACTAAGTGTGCG-GTTTAATATAGCTTCGGCTATA-A-ATG
1 GCACTAAGTGTGCGAG-TTAACATAGCTTCGGCTATATATAAG
* ** *
31666013 GCACTACGTGTGCGAGTTGGCATAGCTTTGGCTATATATAAG
1 GCACTAAGTGTGCGAGTTAACATAGCTTCGGCTATATATAAG
31666055 GCACTAAGTGTG
1 GCACTAAGTGTG
31666067 TGATACTGAC
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
40 29 0.66
41 2 0.05
42 13 0.30
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.31
Consensus pattern (42 bp):
GCACTAAGTGTGCGAGTTAACATAGCTTCGGCTATATATAAG
Found at i:31669822 original size:48 final size:47
Alignment explanation
Indices: 31669770--31669974 Score: 188
Period size: 48 Copynumber: 4.4 Consensus size: 47
31669760 TATCCCGAAT
*
31669770 ATGGTCTTACATGGGATCACATATCGACGACAATGCCATGTCCCAGAC
1 ATGGTCTTACATGGGATCACATATCGATG-CAATGCCATGTCCCAGAC
** * * *
31669818 ATGGTCTTACATGGGATCGTAGATCGATGCTAATGTCATGTCCTAGAC
1 ATGGTCTTACATGGGATCACATATCGATGC-AATGCCATGTCCCAGAC
* *
31669866 ATGGTCTTACATGGAATCACATATCGATG---T-CGATAG-CCCAG-C
1 ATGGTCTTACATGGGATCACATATCGATGCAATGCCAT-GTCCCAGAC
* * ** * *
31669908 TATAGTCTTACACGAAATTACATATCGATGCCAAAGCCATGTCCCAGAC
1 -ATGGTCTTACATGGGATCACATATCGATG-CAATGCCATGTCCCAGAC
*
31669957 ATGGTATTACATGGGATC
1 ATGGTCTTACATGGGATC
31669975 GCACAAAACC
Statistics
Matches: 122, Mismatches: 25, Indels: 20
0.73 0.15 0.12
Matches are distributed among these distances:
42 1 0.01
43 31 0.25
44 2 0.02
47 2 0.02
48 85 0.70
49 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (47 bp):
ATGGTCTTACATGGGATCACATATCGATGCAATGCCATGTCCCAGAC
Done.