Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 96 of 343
Found at i:32024758 original size:39 final size:40
Alignment explanation
Indices: 32024648--32024832 Score: 191
Period size: 40 Copynumber: 4.6 Consensus size: 40
32024638 GCTACTCATT
* * *
32024648 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTTGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATATAGTAACTCGCA
* *
32024688 CAAATGCCTTCGGGGCTTAACCCGG-ATTTAGTAACTCGCA
1 CAAATGCCTTC-GGGCTTAGCCCGGAATATAGTAACTCGCA
*
32024728 CCAATGCCTTCGGGCTTAGCCCGGAAT-TAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCA
* * * * *
32024767 CAAATGCCTTCGGATCTTAGTCC-GAATATGGTCACTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGAATATAGTAAC-TCGCA
32024808 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
32024833 CATCATTCGA
Statistics
Matches: 123, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
39 40 0.33
40 70 0.57
41 13 0.11
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCA
Found at i:32024816 original size:79 final size:81
Alignment explanation
Indices: 32024648--32024832 Score: 207
Period size: 79 Copynumber: 2.3 Consensus size: 81
32024638 GCTACTCATT
* * * *
32024648 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTTGCACAAATGCCTTCGGGGCTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGAGCTTAACCCG
* * *
32024712 GATTTAGTAACTCGCAC
65 AATATAGTAACTAGCAC
* * **
32024729 CAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGA
1 CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGAGCTTAACCCGA
* *
32024792 ATATGGTCACTTAGCA-
66 ATATAGTAAC-TAGCAC
32024808 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
32024833 CATCATTCGA
Statistics
Matches: 87, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
79 59 0.68
80 25 0.29
81 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGAGCTTAACCCGA
ATATAGTAACTAGCAC
Found at i:32032794 original size:38 final size:39
Alignment explanation
Indices: 32032723--32032902 Score: 195
Period size: 39 Copynumber: 4.6 Consensus size: 39
32032713 GCTACTCGTT
*
32032723 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACT-GCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATT-TAGTAACTCGCA
*
32032762 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCA
* *
32032801 CCAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCA
* * * * * * *
32032840 CAAATGCCTTCGGATCTTAGTCCAGATATGGTCACTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGATTTAGTAAC-TCGCA
32032881 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGG-CTTAGCCC
32032903 AGACATCATT
Statistics
Matches: 120, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
38 16 0.13
39 67 0.56
40 29 0.24
41 8 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCA
Found at i:32039910 original size:26 final size:25
Alignment explanation
Indices: 32039801--32039911 Score: 154
Period size: 25 Copynumber: 4.4 Consensus size: 25
32039791 CTGGAGGCCT
32039801 AGCCTCTTTT-AAT-AACTGGGGCAA
1 AGCC-CTTTTCAATAAACTGGGGCAA
***
32039825 AGCCCTTTTTGGTAAACTGGGGCAA
1 AGCCCTTTTCAATAAACTGGGGCAA
*
32039850 ATCCCTTTTCAATAAACTGGGGCAA
1 AGCCCTTTTCAATAAACTGGGGCAA
32039875 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCA-A
32039901 AGCCCTTTTCA
1 AGCCCTTTTCA
32039912 CTTCCTCCAT
Statistics
Matches: 77, Mismatches: 7, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
23 5 0.06
24 5 0.06
25 55 0.71
26 12 0.16
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (25 bp):
AGCCCTTTTCAATAAACTGGGGCAA
Found at i:32039983 original size:20 final size:20
Alignment explanation
Indices: 32039958--32040032 Score: 102
Period size: 20 Copynumber: 3.9 Consensus size: 20
32039948 TTATGAATAC
*
32039958 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
32039978 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
32039998 ATCATGTGCATATCGTATCA-
1 ATCATGTGCATATCATA-CAT
32040018 ATCATGT--ATATCATA
1 ATCATGTGCATATCATA
32040033 TCCCACGTAT
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
18 7 0.14
20 42 0.82
21 2 0.04
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:32039989 original size:11 final size:11
Alignment explanation
Indices: 32039958--32040011 Score: 53
Period size: 11 Copynumber: 5.3 Consensus size: 11
32039948 TTATGAATAC
32039958 ATCATGTGCAT
1 ATCATGTGCAT
* *
32039969 TTCA--TACAT
1 ATCATGTGCAT
32039978 ATCATGTGCAT
1 ATCATGTGCAT
*
32039989 ATCA--TACAT
1 ATCATGTGCAT
32039998 ATCATGTGCAT
1 ATCATGTGCAT
32040009 ATC
1 ATC
32040012 GTATCAATCA
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
9 15 0.45
11 18 0.55
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.37
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:32042415 original size:5 final size:5
Alignment explanation
Indices: 32042407--32042432 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
32042397 AAAAAAAGAA
32042407 AAAAT AAAAT AAAAT AAAAT AAAAT A
1 AAAAT AAAAT AAAAT AAAAT AAAAT A
32042433 CATGTATACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:32048186 original size:46 final size:48
Alignment explanation
Indices: 32048044--32048394 Score: 273
Period size: 46 Copynumber: 7.4 Consensus size: 48
32048034 TGTGCACTAG
* * *
32048044 TGTAAGA-CATGTTTGGGACATGCATCGGCCAC-ATTATG-AGAGCCAA
1 TGTAAGACCATGTCTGGGACATGCATCGGCCTCGA-GATGTAGAGCCAA
* * * ** * *
32048090 TGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGA-CAAGAGCTAG
1 TGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGATGTAGAGCCAA
*
32048138 TGTAAGA-CATGTCTGGGACATGCATCGGCCTCGAGATGTA-AGCCAG
1 TGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGATGTAGAGCCAA
* *
32048184 TGTAAGA-CATGTCTGGGACATGCATCGG-CTACGAGA--TA-TGTCAA
1 TGTAAGACCATGTCTGGGACATGCATCGGCCT-CGAGATGTAGAGCCAA
* * * *
32048228 TGTAAGACCATGTCTGGGACATGGCATCGACATAGAGATGTGAGAGCCAG
1 TGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGATGT-AGAGCCAA
* * * * * *
32048278 TGTAAGACCATGTTTTGGGACATGGCATAGGCCTCGA-TTTTGATAGTCAA
1 TGTAAGACCATG-TCTGGGACAT-GCATCGGCCTCGAGATGT-AGAGCCAA
* * *
32048328 TGTAAGACCATGTCTGGGACATGCCATC-GACT--TGATGGATGAGCCAA
1 TGTAAGACCATGTCTGGGACATG-CATCGGCCTCGAGATGTA-GAGCCAA
32048375 TGTAAGACCATGTCTGGGAC
1 TGTAAGACCATGTCTGGGAC
32048395 GTGGCATTAG
Statistics
Matches: 245, Mismatches: 43, Indels: 33
0.76 0.13 0.10
Matches are distributed among these distances:
44 12 0.05
45 16 0.07
46 69 0.28
47 53 0.22
48 27 0.11
49 14 0.06
50 35 0.14
51 19 0.08
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGATGTAGAGCCAA
Found at i:32048336 original size:100 final size:94
Alignment explanation
Indices: 32048080--32048401 Score: 306
Period size: 100 Copynumber: 3.4 Consensus size: 94
32048070 GGCCACATTA
* * * * * * * *
32048080 TGAGAGCCAATGTAAGACCATGTCTAGGACATGGCATCGGC-ATTGAGACAAGAGCTAGTGTAAG
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATAGGCTA-CGAGATATG-TC-AATGTAAG
*
32048144 A-CATGTCTGGGACAT-GCATCGGCCTCGAGATG
63 ACCATGTCTGGGACATGGCATC-GACT-GAGATG
*
32048176 T-A-AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGATATGTCAATGTAAGACC
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATAGGCTACGAGATATGTCAATGTAAGACC
32048237 ATGTCTGGGACATGGCATCGACATAGAGATG
66 ATGTCTGGGACATGGCATCGAC-T-GAGATG
*
32048268 TGAGAGCCAGTGTAAGACCATGTTTTGGGACATGGCATAGGCCT-CGATTTTGATA-GTCAATGT
1 TGAGAGCCAGTGTAAGACCATG-TCTGGGACATGGCATAGG-CTACGA----GATATGTCAATGT
* *
32048331 AAGACCATGTCTGGGACATGCCATCGACT-TGATG
60 AAGACCATGTCTGGGACATGGCATCGACTGAGATG
* *
32048365 -GATGAGCCAATGTAAGACCATGTCTGGGACGTGGCAT
1 TGA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
32048402 TAGCATTACA
Statistics
Matches: 195, Mismatches: 16, Indels: 30
0.81 0.07 0.12
Matches are distributed among these distances:
90 8 0.04
91 17 0.09
92 27 0.14
93 15 0.08
94 25 0.13
95 5 0.03
96 25 0.13
97 31 0.16
98 2 0.01
99 1 0.01
100 35 0.18
101 4 0.02
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (94 bp):
TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATAGGCTACGAGATATGTCAATGTAAGACC
ATGTCTGGGACATGGCATCGACTGAGATG
Found at i:32051336 original size:22 final size:22
Alignment explanation
Indices: 32051310--32051360 Score: 102
Period size: 22 Copynumber: 2.3 Consensus size: 22
32051300 TATATATATA
32051310 TAACATAGCTTGTCTAACATTT
1 TAACATAGCTTGTCTAACATTT
32051332 TAACATAGCTTGTCTAACATTT
1 TAACATAGCTTGTCTAACATTT
32051354 TAACATA
1 TAACATA
32051361 CCATAACCGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.35, C:0.18, G:0.08, T:0.39
Consensus pattern (22 bp):
TAACATAGCTTGTCTAACATTT
Found at i:32053340 original size:15 final size:15
Alignment explanation
Indices: 32053317--32053347 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
32053307 TCAAAAATTC
32053317 CAATACAAAACATAT
1 CAATACAAAACATAT
*
32053332 CAATCCAAAACATAT
1 CAATACAAAACATAT
32053347 C
1 C
32053348 TTTCATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:32058122 original size:7 final size:7
Alignment explanation
Indices: 32058109--32058138 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
32058099 ACGCTACCTT
32058109 ATATCAC
1 ATATCAC
*
32058116 TTATCAC
1 ATATCAC
32058123 ATATCAC
1 ATATCAC
32058130 ATATCAC
1 ATATCAC
32058137 AT
1 AT
32058139 GTTGCTCGCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.40, C:0.27, G:0.00, T:0.33
Consensus pattern (7 bp):
ATATCAC
Found at i:32058338 original size:20 final size:20
Alignment explanation
Indices: 32058313--32058350 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
32058303 GTAACATATA
32058313 TCATGAACTCAGACCACAAC
1 TCATGAACTCAGACCACAAC
* *
32058333 TCATGAGCTCAGATCACA
1 TCATGAACTCAGACCACA
32058351 TAGTTCCTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.32, G:0.13, T:0.18
Consensus pattern (20 bp):
TCATGAACTCAGACCACAAC
Found at i:32065131 original size:13 final size:14
Alignment explanation
Indices: 32065107--32065138 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
32065097 CAAACCTTAC
32065107 AACATACATGACAT
1 AACATACATGACAT
32065121 AACAT-CATGACAT
1 AACATACATGACAT
32065134 AACAT
1 AACAT
32065139 TATCAACCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 13 0.72
14 5 0.28
ACGTcount: A:0.50, C:0.22, G:0.06, T:0.22
Consensus pattern (14 bp):
AACATACATGACAT
Found at i:32067822 original size:93 final size:93
Alignment explanation
Indices: 32067663--32067835 Score: 301
Period size: 93 Copynumber: 1.9 Consensus size: 93
32067653 CGCCCATAAG
* * * *
32067663 CGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
32067728 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
32067756 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
32067821 ACGAGTTCGGATGCC
66 ACGAGTTCGGATGCC
32067836 CAAATATCCT
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:32067824 original size:46 final size:46
Alignment explanation
Indices: 32067656--32067831 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
32067646 TGTAACCCGC
* * * *
32067656 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
32067702 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
32067752 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
32067795 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
32067832 TGCCCAAATA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:32067850 original size:46 final size:45
Alignment explanation
Indices: 32067707--32067850 Score: 127
Period size: 46 Copynumber: 3.1 Consensus size: 45
32067697 CGCATCCATG
* *
32067707 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGT-TACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA-TAT-C--CTA
* * *
32067755 A-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC--ATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCATATCC-TA
32067800 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT-
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC--ATATCCTA
32067846 AGTGA
1 AGTGA
32067851 CATGTCACTT
Statistics
Matches: 79, Mismatches: 8, Indels: 20
0.74 0.07 0.19
Matches are distributed among these distances:
44 5 0.06
45 2 0.03
46 34 0.43
47 30 0.38
48 5 0.06
49 3 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATCCTA
Found at i:32070831 original size:23 final size:23
Alignment explanation
Indices: 32070804--32070855 Score: 86
Period size: 23 Copynumber: 2.3 Consensus size: 23
32070794 CAAGTTACAC
32070804 AGCCAAATACCACATCAAACCCT
1 AGCCAAATACCACATCAAACCCT
* *
32070827 GGCCAAATACCACATCAAAGCCT
1 AGCCAAATACCACATCAAACCCT
32070850 AGCCAA
1 AGCCAA
32070856 TTACAACCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.42, C:0.37, G:0.10, T:0.12
Consensus pattern (23 bp):
AGCCAAATACCACATCAAACCCT
Found at i:32072578 original size:22 final size:22
Alignment explanation
Indices: 32072553--32072601 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
32072543 CTACCTTTAG
32072553 CCTATAGAACACAAATTTTACA
1 CCTATAGAACACAAATTTTACA
*
32072575 CCTATAGAACACAAATTTTGCA
1 CCTATAGAACACAAATTTTACA
32072597 CCTAT
1 CCTAT
32072602 TACAATTTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.41, C:0.24, G:0.06, T:0.29
Consensus pattern (22 bp):
CCTATAGAACACAAATTTTACA
Found at i:32073036 original size:25 final size:25
Alignment explanation
Indices: 32072984--32073037 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 25
32072974 GACATTTGGG
* * *
32072984 AAGCCTTTGTGGCGAGTTGTCTATA
1 AAGCCTTTGTGGCGAATTATCTAGA
* *
32073009 AAGCCTTTGTGGTGAATTATCTGGA
1 AAGCCTTTGTGGCGAATTATCTAGA
32073034 AAGC
1 AAGC
32073038 ACTTATGGCA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.24, C:0.15, G:0.28, T:0.33
Consensus pattern (25 bp):
AAGCCTTTGTGGCGAATTATCTAGA
Found at i:32080651 original size:46 final size:44
Alignment explanation
Indices: 32080563--32080738 Score: 156
Period size: 46 Copynumber: 3.8 Consensus size: 44
32080553 GGGTAGGATA
*
32080563 CCGATGCCATGTCCCAGACATGGTTTTACACTGGCTCATCTCGTA-G
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCATCTCG-AGG
*
32080609 TCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGC-T-CATCTCGAGG
* ** * * * *
32080655 CCGATACATGTCTTAGACATGTCTTACACTAGCTCTCGTCTCAATG
1 CCGATGCATGTCCCAGACATGTCTTACACT-G-GCTCATCTCGAGG
* * *
32080701 CCGGTGCCATGTCCCAGACGTGGTCTTACACTAGCTCA
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCA
32080739 CAATAACCCA
Statistics
Matches: 105, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
44 12 0.11
45 16 0.15
46 53 0.50
47 13 0.12
48 11 0.10
ACGTcount: A:0.21, C:0.30, G:0.20, T:0.28
Consensus pattern (44 bp):
CCGATGCATGTCCCAGACATGTCTTACACTGGCTCATCTCGAGG
Found at i:32084051 original size:46 final size:46
Alignment explanation
Indices: 32083993--32084210 Score: 191
Period size: 46 Copynumber: 4.7 Consensus size: 46
32083983 ATTCGTGTGT
*
32083993 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGA-
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCATTA-GAC
* *
32084039 GAGCCAGTGTAAGACCATGTCTAGGACATGACATC-G--TCATTGAGAC
1 GAGCTAGTGTAAGA-CATGTCTGGGACATG-CATCGGCCTCATT-AGAC
* * *
32084085 GAGGGCTAGTGTAAAACATGTCTGAGACATGCATCGGCCTC--GAGAC
1 GA--GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCATTAGAC
* *
32084131 GATGGCTAGTGTAAGACATGTCTGGAACATGCATCGGCCTC--GAGAC
1 GA--GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCATTAGAC
* * *
32084177 GTAAGCTAGTGTAAAACATCTCTCGGACATGCAT
1 G--AGCTAGTGTAAGACATGTCTGGGACATGCAT
32084211 TAGCTACAAG
Statistics
Matches: 145, Mismatches: 16, Indels: 22
0.79 0.09 0.12
Matches are distributed among these distances:
45 6 0.04
46 93 0.64
47 29 0.20
48 15 0.10
49 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (46 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCATTAGAC
Found at i:32084235 original size:92 final size:94
Alignment explanation
Indices: 32083993--32084251 Score: 262
Period size: 92 Copynumber: 2.8 Consensus size: 94
32083983 ATTCGTGTGT
* * ** * *
32083993 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATG
1 GAGCTAGTGTAAAACATGTCT-GGACATGCATCGGCTACAAGATGATAGCCTGTGTAAGACCATG
* *
32084058 TCTAGG-ACATGACATCGTCATTGAGACGA
65 TCTAGGAACATGACATCGGCATCGAGACGA
* * * *
32084087 GGGCTAGTGTAAAACATGTCTGAGACATGCATCGGCCT-CGAGACGAT-GGCTAGTGTAAGA-CA
1 GAGCTAGTGTAAAACATGTCTG-GACATGCATCGG-CTACAAGATGATAGCCT-GTGTAAGACCA
*
32084149 TGTCT-GGAACATG-CATCGGCCTCGAGACGTA
63 TGTCTAGGAACATGACATCGGCATCGAGACG-A
* ** *
32084180 -AGCTAGTGTAAAACATCTCTCGGACATGCATTAGCTACAAGATGATAGTCTGTGTAAGACCATG
1 GAGCTAGTGTAAAACATGTCT-GGACATGCATCGGCTACAAGATGATAGCCTGTGTAAGACCATG
32084244 TCTAGGAA
65 TCTAGGAA
32084252 TGGCATCGAC
Statistics
Matches: 135, Mismatches: 20, Indels: 20
0.77 0.11 0.11
Matches are distributed among these distances:
91 2 0.01
92 58 0.43
93 27 0.20
94 47 0.35
95 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (94 bp):
GAGCTAGTGTAAAACATGTCTGGACATGCATCGGCTACAAGATGATAGCCTGTGTAAGACCATGT
CTAGGAACATGACATCGGCATCGAGACGA
Found at i:32085294 original size:28 final size:28
Alignment explanation
Indices: 32085254--32085311 Score: 82
Period size: 28 Copynumber: 2.0 Consensus size: 28
32085244 CACACAGGCT
*
32085254 AGGACACGGGCG-TGTCATGGCCGTGTGA
1 AGGACACGGGCGATGCCA-GGCCGTGTGA
32085282 AGGACACGGGCGTATGCCAGGCCGTGTGA
1 AGGACACGGGCG-ATGCCAGGCCGTGTGA
32085311 A
1 A
32085312 AACCCTTGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 12 0.44
29 11 0.41
30 4 0.15
ACGTcount: A:0.21, C:0.22, G:0.41, T:0.16
Consensus pattern (28 bp):
AGGACACGGGCGATGCCAGGCCGTGTGA
Found at i:32085612 original size:23 final size:23
Alignment explanation
Indices: 32085585--32085630 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
32085575 TGATAAGTTT
32085585 AAGAAAGTTTTAAATTTTCCAAG
1 AAGAAAGTTTTAAATTTTCCAAG
32085608 AAGAAAGTTTTAAATTTTCCAAG
1 AAGAAAGTTTTAAATTTTCCAAG
32085631 TCATGAAGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.43, C:0.09, G:0.13, T:0.35
Consensus pattern (23 bp):
AAGAAAGTTTTAAATTTTCCAAG
Found at i:32089714 original size:50 final size:50
Alignment explanation
Indices: 32089586--32089783 Score: 218
Period size: 50 Copynumber: 4.0 Consensus size: 50
32089576 GTAGACAAGG
* * * * * *
32089586 CTATCTGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACC-AA
1 CTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
* *
32089635 CTATCCGGTACATGTAGTAGCCTGCACTTAGTATTACACACGTGACCTAA
1 CTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
* * * * *
32089685 CCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAA
1 CTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
* * * * *
32089735 GTTAACGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCT
1 -CTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCT
32089784 CGCAATAGAT
Statistics
Matches: 123, Mismatches: 24, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
49 39 0.32
50 45 0.37
51 39 0.32
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (50 bp):
CTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
Found at i:32096468 original size:119 final size:120
Alignment explanation
Indices: 32096286--32096508 Score: 292
Period size: 119 Copynumber: 1.9 Consensus size: 120
32096276 TCCTCGTTCA
* *
32096286 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATACCTTCGGGACTTAACCCGGAT
* *
32096351 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
32096406 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATACCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATACCTTCGGGA-CTTAACCCGG
* * *
32096468 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
32096509 CATCATTCAA
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 4 0.04
119 65 0.73
120 20 0.22
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATACCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:32096508 original size:40 final size:40
Alignment explanation
Indices: 32096284--32096508 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
32096274 GCTCCTCGTT
* *
32096284 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
32096324 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
32096364 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
32096404 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * * *
32096443 CAAATACCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
32096484 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
32096509 CATCATTCAA
Statistics
Matches: 162, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
38 2 0.01
39 30 0.19
40 118 0.73
41 12 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:32104532 original size:40 final size:40
Alignment explanation
Indices: 32104308--32104532 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
32104298 GCTCCTCGTT
* *
32104308 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
32104348 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
32104388 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
32104428 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * * *
32104467 CAAATACCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
*
32104508 CAAA-GCCTTCGGGACTTAGTCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
32104533 CATCATTCAA
Statistics
Matches: 163, Mismatches: 16, Indels: 12
0.85 0.08 0.06
Matches are distributed among these distances:
38 2 0.01
39 30 0.18
40 119 0.73
41 12 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:32104532 original size:119 final size:120
Alignment explanation
Indices: 32104310--32104525 Score: 287
Period size: 119 Copynumber: 1.8 Consensus size: 120
32104300 TCCTCGTTCA
* *
32104310 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATACCTTCGGGACTTAACCCGGAT
* *
32104375 TTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
32104430 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATACCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATACCTTCGGGA-CTTAACCCGG
* *
32104492 ATATGGTCACTTAGCACAAA-GCCTTCGGGACTTA
64 ATATAGTAAC-TAGCACAAATGCCTTCGGGACTTA
32104526 GTCCGGACAT
Statistics
Matches: 83, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 4 0.05
119 59 0.71
120 20 0.24
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATACCTTCGGGACTTAACCCGGAT
ATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:32109807 original size:40 final size:40
Alignment explanation
Indices: 32109752--32109936 Score: 309
Period size: 40 Copynumber: 4.6 Consensus size: 40
32109742 CGGATGATAA
* *
32109752 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
32109792 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
32109832 CCGGGCTAAGTCCCAAAGGCATTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
32109872 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
32109912 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
32109937 AGCAAGTAGT
Statistics
Matches: 137, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
40 136 0.99
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:32109885 original size:80 final size:80
Alignment explanation
Indices: 32109748--32109968 Score: 331
Period size: 80 Copynumber: 2.8 Consensus size: 80
32109738 TATTCGGATG
* *
32109748 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA-TCCGGGCTAAGTCCCGAAGGC
32109812 ATTTGTGCGAGTTACT
65 ATTTGTGCGAGTTACT
* *
32109828 ATATCCGGGCTAAGTCCCAAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
32109893 TTTGTGCGAGTTACT
66 TTTGTGCGAGTTACT
* * * *
32109908 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGTTATATTC-GGCTAAATCCCGAAG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTA-CTATATCCGGGCTAAGTCCCGAAG
32109969 ATGCTTGGGT
Statistics
Matches: 129, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
79 16 0.12
80 112 0.87
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCGAGTTACT
Found at i:32112075 original size:46 final size:46
Alignment explanation
Indices: 32111988--32112158 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
32111978 GGGGTAGGAT
* *
32111988 GTCGATGCCATGTCCTAGACATGGTTTTACACTGGC-TCATCTCGTA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTCATCTCG-A
32112034 GTCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCGA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTT-CATCTCGA
* * * *
32112079 GGCTGATG-CATGTCTCAGACAT-GTCTTACACTAGCTCTCGTCT-GA
1 GTC-GATGCCATGTCCCAGACATGGTCTTACACTGGCT-TCATCTCGA
*
32112124 GTACCAATGCCATGTCCCAGACATGGTCTTACACT
1 GT--CGATGCCATGTCCCAGACATGGTCTTACACT
32112159 AGCTCACAAT
Statistics
Matches: 108, Mismatches: 9, Indels: 14
0.82 0.07 0.11
Matches are distributed among these distances:
44 12 0.11
45 20 0.19
46 51 0.47
47 15 0.14
48 10 0.09
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (46 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTCATCTCGA
Found at i:32113941 original size:25 final size:26
Alignment explanation
Indices: 32113891--32113949 Score: 77
Period size: 25 Copynumber: 2.3 Consensus size: 26
32113881 CATTTTGACC
**
32113891 CACAGCTTGTGTGAGCAAACCTATTT
1 CACAGCTCATGTGAGCAAACCTATTT
32113917 CACAGCTCATGTG-GCAAA-CTCATTT
1 CACAGCTCATGTGAGCAAACCT-ATTT
32113942 CACAGCTC
1 CACAGCTC
32113950 CTATGAGTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
24 2 0.07
25 17 0.57
26 11 0.37
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (26 bp):
CACAGCTCATGTGAGCAAACCTATTT
Found at i:32118884 original size:19 final size:19
Alignment explanation
Indices: 32118860--32118898 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
32118850 GAGAGCATGT
32118860 TGTGCTACTTTTCACTCTA
1 TGTGCTACTTTTCACTCTA
*
32118879 TGTGCTACTTTTTACTCTA
1 TGTGCTACTTTTCACTCTA
32118898 T
1 T
32118899 CTTTTCTAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.15, C:0.23, G:0.10, T:0.51
Consensus pattern (19 bp):
TGTGCTACTTTTCACTCTA
Found at i:32121323 original size:30 final size:30
Alignment explanation
Indices: 32121289--32121351 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
32121279 ACTTAATAAG
32121289 CAAATGCCTCTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
*
32121319 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
32121349 CAA
1 CAA
32121352 TAAAATAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.57, C:0.16, G:0.03, T:0.24
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAACAAAATTAA
Found at i:32124018 original size:49 final size:49
Alignment explanation
Indices: 32123956--32124195 Score: 273
Period size: 49 Copynumber: 4.8 Consensus size: 49
32123946 AAAGCTGTTT
* *
32123956 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCC
* * * * ** **
32124005 GCTACACATAGTAGCCTACACTTTGTACTACACAAGTGACCTAACCATTT
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCC
* ** * *
32124055 GATACATGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCG
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCC
* * * *
32124106 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATTC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCC
*
32124155 GGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
32124196 TCACAATAGA
Statistics
Matches: 155, Mismatches: 33, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
49 77 0.50
50 42 0.27
51 36 0.23
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCC
Found at i:32124192 original size:100 final size:99
Alignment explanation
Indices: 32123964--32124195 Score: 313
Period size: 100 Copynumber: 2.3 Consensus size: 99
32123954 TTGGTACGCA
* *
32123964 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGCTACACATAGTAGCCTACACTTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGCTACACATAGTAGCCTACACTTA
* * *
32124029 GTACTACACAAGTGACCTAACCATTTGATACATG
66 GTACTACACAAGCGACCTAACCATTCGATACACG
* * * * *
32124063 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCGCTACACATAGTAGCCTACACT
* ** *
32124128 TAGTACTACACATGCGACC-AATTATTCGGTACACG
64 TAGTACTACACAAGCGACCTAACCATTCGATACACG
32124163 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
32124196 TCACAATAGA
Statistics
Matches: 116, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
99 31 0.27
100 45 0.39
101 40 0.34
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGCTACACATAGTAGCCTACACTTA
GTACTACACAAGCGACCTAACCATTCGATACACG
Found at i:32128563 original size:21 final size:21
Alignment explanation
Indices: 32128538--32128624 Score: 67
Period size: 20 Copynumber: 4.3 Consensus size: 21
32128528 CTTCATAAAA
*
32128538 TTTTATAAATTTTTTTATGAT
1 TTTTATAAATTTTTATATGAT
* * *
32128559 TTTTAT-AATTTTTTTCTAAT
1 TTTTATAAATTTTTATATGAT
* *
32128579 TTTT-TCTAATTTGTATAT--T
1 TTTTAT-AAATTTTTATATGAT
32128598 TTTTATTAAATTTTTAT-TGAT
1 TTTTA-TAAATTTTTATATGAT
32128619 TTTTAT
1 TTTTAT
32128625 TTTTTATTAT
Statistics
Matches: 53, Mismatches: 7, Indels: 13
0.73 0.10 0.18
Matches are distributed among these distances:
19 7 0.13
20 25 0.47
21 21 0.40
ACGTcount: A:0.25, C:0.02, G:0.03, T:0.69
Consensus pattern (21 bp):
TTTTATAAATTTTTATATGAT
Found at i:32128582 original size:30 final size:29
Alignment explanation
Indices: 32128538--32128640 Score: 95
Period size: 29 Copynumber: 3.5 Consensus size: 29
32128528 CTTCATAAAA
*
32128538 TTTTATAAATTTTTTTATGATTTTTATAATT
1 TTTTATTAA-TTTTTTATGATTTTTAT-ATT
* * *
32128569 TTTT-TCTAATTTTTTCTAATTTGTATATT
1 TTTTAT-TAATTTTTTATGATTTTTATATT
*
32128598 TTTTATTAAATTTTTATTGA-TTTT-TATT
1 TTTTATTAATTTTTTA-TGATTTTTATATT
*
32128626 TTTTATTATTTTTTT
1 TTTTATTAATTTTTT
32128641 TCACATGTCA
Statistics
Matches: 59, Mismatches: 10, Indels: 9
0.76 0.13 0.12
Matches are distributed among these distances:
28 17 0.29
29 18 0.31
30 18 0.31
31 6 0.10
ACGTcount: A:0.23, C:0.02, G:0.03, T:0.72
Consensus pattern (29 bp):
TTTTATTAATTTTTTATGATTTTTATATT
Found at i:32128613 original size:11 final size:10
Alignment explanation
Indices: 32128538--32128625 Score: 58
Period size: 11 Copynumber: 8.7 Consensus size: 10
32128528 CTTCATAAAA
*
32128538 TTTTATAAAT
1 TTTTATTAAT
32128548 TTTT-TTATGAT
1 TTTTATTA--AT
32128559 TTTTA-TAAT
1 TTTTATTAAT
*
32128568 TTTTTTCTAAT
1 TTTTAT-TAAT
32128579 TTTT-TCTAAT
1 TTTTAT-TAAT
* *
32128589 TTGTA-TATT
1 TTTTATTAAT
32128598 TTTTATTAAAT
1 TTTTATT-AAT
*
32128609 TTTTATTGAT
1 TTTTATTAAT
32128619 TTTTATT
1 TTTTATT
32128626 TTTTATTATT
Statistics
Matches: 63, Mismatches: 7, Indels: 16
0.73 0.08 0.19
Matches are distributed among these distances:
9 15 0.24
10 23 0.37
11 25 0.40
ACGTcount: A:0.25, C:0.02, G:0.03, T:0.69
Consensus pattern (10 bp):
TTTTATTAAT
Found at i:32129176 original size:19 final size:18
Alignment explanation
Indices: 32129145--32129189 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
32129135 TTATGATTTT
* *
32129145 TTTTATATTTTATCAGTA
1 TTTTATATATTATCAATA
*
32129163 TTTTATATAATTATGAATA
1 TTTTATAT-ATTATCAATA
32129182 TTTTATAT
1 TTTTATAT
32129190 TTAAAATTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
18 8 0.35
19 15 0.65
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.60
Consensus pattern (18 bp):
TTTTATATATTATCAATA
Found at i:32129251 original size:21 final size:21
Alignment explanation
Indices: 32129220--32129279 Score: 68
Period size: 23 Copynumber: 2.8 Consensus size: 21
32129210 TTAATTTCGT
*
32129220 ATATTTATAAATATTTTTTTT
1 ATATTTATAAATATTTTTTTG
*
32129241 AT-TTATATAAAAATATTCTTTTG
1 ATATT-TAT--AAATATTTTTTTG
32129264 ATATTTATAAATATTT
1 ATATTTATAAATATTT
32129280 GTTATGAACT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
20 2 0.06
21 12 0.38
23 16 0.50
24 2 0.06
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (21 bp):
ATATTTATAAATATTTTTTTG
Found at i:32135350 original size:32 final size:31
Alignment explanation
Indices: 32135314--32135405 Score: 76
Period size: 32 Copynumber: 3.2 Consensus size: 31
32135304 TTTCTTACAG
32135314 TAATTTGATATACTTTTTATTCTTTATTGCAA
1 TAATTTGATATA-TTTTTATTCTTTATTGCAA
* * *
32135346 TAA-TT--T-TA--GTTA---TTTCTTCCAA
1 TAATTTGATATATTTTTATTCTTTATTGCAA
32135368 TAATTTGATATATTTTTTATTCTTTATTGCAA
1 TAATTTGATATA-TTTTTATTCTTTATTGCAA
32135400 TAATTT
1 TAATTT
32135406 TAGTTATAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 20
0.63 0.09 0.29
Matches are distributed among these distances:
22 11 0.25
23 2 0.05
25 4 0.09
26 2 0.05
28 2 0.05
29 4 0.09
31 2 0.05
32 17 0.39
ACGTcount: A:0.28, C:0.09, G:0.05, T:0.58
Consensus pattern (31 bp):
TAATTTGATATATTTTTATTCTTTATTGCAA
Found at i:32135374 original size:54 final size:54
Alignment explanation
Indices: 32135292--32135412 Score: 215
Period size: 54 Copynumber: 2.2 Consensus size: 54
32135282 AAAGTCAACT
*
32135292 TAATTTTAGTTATTTCTTACAGTAATTTGATATACTTTTTATTCTTTATTGCAA
1 TAATTTTAGTTATTTCTTACAATAATTTGATATACTTTTTATTCTTTATTGCAA
* *
32135346 TAATTTTAGTTATTTCTTCCAATAATTTGATATATTTTTTATTCTTTATTGCAA
1 TAATTTTAGTTATTTCTTACAATAATTTGATATACTTTTTATTCTTTATTGCAA
32135400 TAATTTTAGTTAT
1 TAATTTTAGTTAT
32135413 AAAACTGAGT
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 64 1.00
ACGTcount: A:0.28, C:0.08, G:0.07, T:0.57
Consensus pattern (54 bp):
TAATTTTAGTTATTTCTTACAATAATTTGATATACTTTTTATTCTTTATTGCAA
Found at i:32139400 original size:2 final size:2
Alignment explanation
Indices: 32139393--32139419 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
32139383 GGAATGATAA
32139393 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
32139420 CATGTATGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:32139602 original size:28 final size:28
Alignment explanation
Indices: 32139537--32139743 Score: 326
Period size: 28 Copynumber: 7.4 Consensus size: 28
32139527 GAGATTGGCG
* * * *
32139537 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
32139566 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
32139594 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
32139622 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
32139650 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
32139678 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
32139706 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
32139733 CTGAGTGTGCG
1 CTAAGTGTGCG
32139744 GACTTAATAT
Statistics
Matches: 169, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
27 24 0.14
28 130 0.77
29 15 0.09
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:32144657 original size:26 final size:26
Alignment explanation
Indices: 32144628--32144678 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
32144618 AAATCAAATA
32144628 GTTTAAAATAAATAATATATAAAAGG
1 GTTTAAAATAAATAATATATAAAAGG
* * *
32144654 GTTTGAGATAAATAATATGTAAAAG
1 GTTTAAAATAAATAATATATAAAAG
32144679 AAATATTTGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.53, C:0.00, G:0.16, T:0.31
Consensus pattern (26 bp):
GTTTAAAATAAATAATATATAAAAGG
Found at i:32147012 original size:39 final size:39
Alignment explanation
Indices: 32146955--32147240 Score: 301
Period size: 39 Copynumber: 7.3 Consensus size: 39
32146945 AACCACGATA
* * * *
32146955 ATGAGCCACCCCAACACCCTGGACCTAGTGGTAGGGGGG
1 ATGAGCCACCACACCACCCTGGACCTGGTGGTAGGGGAG
* *
32146994 ATGAGCCACCACACCACCCTGAACCTAGTGGTATGGGGA-
1 ATGAGCCACCACACCACCCTGGACCTGGTGGTA-GGGGAG
* * * * *
32147033 ATGAACCACTACATCACCCCGGACCTGGTGGTAGGAGAG
1 ATGAGCCACCACACCACCCTGGACCTGGTGGTAGGGGAG
** *
32147072 A-GAAGCCACCACACCACCCCAGACCTAGTGGTATGGGG-G
1 ATG-AGCCACCACACCACCCTGGACCTGGTGGTA-GGGGAG
* *
32147111 ATGAGCCACCACATCA-CCTCGGACCTGGTGGTAGAGGAG
1 ATGAGCCACCACACCACCCT-GGACCTGGTGGTAGGGGAG
* * *
32147150 AGGAGCCACCACATCACCCCGGACCTGGTGGTAGGGGAG
1 ATGAGCCACCACACCACCCTGGACCTGGTGGTAGGGGAG
* *
32147189 AGGAGCCACCACACCACCCTGGACCCGGTGGTAGGGGAG
1 ATGAGCCACCACACCACCCTGGACCTGGTGGTAGGGGAG
* *
32147228 AGGAACCACCACA
1 ATGAGCCACCACA
32147241 TGGGGAAACA
Statistics
Matches: 210, Mismatches: 29, Indels: 16
0.82 0.11 0.06
Matches are distributed among these distances:
38 10 0.05
39 190 0.90
40 10 0.05
ACGTcount: A:0.27, C:0.31, G:0.30, T:0.12
Consensus pattern (39 bp):
ATGAGCCACCACACCACCCTGGACCTGGTGGTAGGGGAG
Found at i:32147241 original size:78 final size:79
Alignment explanation
Indices: 32146955--32147240 Score: 339
Period size: 78 Copynumber: 3.7 Consensus size: 79
32146945 AACCACGATA
* * * * * * * *
32146955 ATGAGCCACCCCAACACCCTGGACCTAGTGGTAGGGGGGATGAGCCACCACACCACCCTGAACCT
1 ATGAGCCACCACATCACCCTGGACCTGGTGGTAGGGGAGAGGAACCACCACACCACCCCGGACCT
32147020 AGTGGTATGGGGA-
66 AGTGGTATGGGGAG
* * * * *
32147033 ATGAACCACTACATCACCCCGGACCTGGTGGTAGGAGAGA-GAAGCCACCACACCACCCCAGACC
1 ATGAGCCACCACATCACCCTGGACCTGGTGGTAGGGGAGAGGAA-CCACCACACCACCCCGGACC
32147097 TAGTGGTATGGGG-G
65 TAGTGGTATGGGGAG
* * *
32147111 ATGAGCCACCACATCA-CCTCGGACCTGGTGGTAGAGGAGAGGAGCCACCACATCACCCCGGACC
1 ATGAGCCACCACATCACCCT-GGACCTGGTGGTAGGGGAGAGGAACCACCACACCACCCCGGACC
*
32147175 TGGTGGTA-GGGGAG
65 TAGTGGTATGGGGAG
* * *
32147189 AGGAGCCACCACACCACCCTGGACCCGGTGGTAGGGGAGAGGAACCACCACA
1 ATGAGCCACCACATCACCCTGGACCTGGTGGTAGGGGAGAGGAACCACCACA
32147241 TGGGGAAACA
Statistics
Matches: 176, Mismatches: 26, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
77 8 0.05
78 163 0.93
79 5 0.03
ACGTcount: A:0.27, C:0.31, G:0.30, T:0.12
Consensus pattern (79 bp):
ATGAGCCACCACATCACCCTGGACCTGGTGGTAGGGGAGAGGAACCACCACACCACCCCGGACCT
AGTGGTATGGGGAG
Found at i:32147241 original size:117 final size:116
Alignment explanation
Indices: 32146957--32147241 Score: 358
Period size: 117 Copynumber: 2.4 Consensus size: 116
32146947 CCACGATAAT
* * *
32146957 GAGCCACCCCAACACCCTGGACCTAGTGGTAGGGGGGATGAGCCACCACACCACCCTGAACCTAG
1 GAGCCACCACACCACCCTGGACCTAGTGGTA-GGGGGATGAGCCACCACATCACCCTGAACCTAG
* * *
32147022 TGGTATGGGGAATGAACCACTACATCACCCCGGACCTGGTGGTAGGAGAGAG
65 TGGTATGAGGAAGGAACCACCACATCACCCCGGACCTGGTGGTAGGAGAGAG
* ** * *
32147074 AAGCCACCACACCACCCCAGACCTAGTGGTATGGGGGATGAGCCACCACATCA-CCTCGGACCTG
1 GAGCCACCACACCACCCTGGACCTAGTGGTA-GGGGGATGAGCCACCACATCACCCT-GAACCTA
* *
32147138 GTGGTA-GAGGAGAGGAGCCACCACATCACCCCGGACCTGGTGGTAGGGGAGAG
64 GTGGTATGAGGA-AGGAACCACCACATCACCCCGGACCTGGTGGTAGGAGAGAG
** * *
32147191 GAGCCACCACACCACCCTGGACCCGGTGGTAGGGGAGAGGAACCACCACAT
1 GAGCCACCACACCACCCTGGACCTAGTGGTAGGGG-GATGAGCCACCACAT
32147242 GGGGAAACAC
Statistics
Matches: 144, Mismatches: 21, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
116 11 0.08
117 133 0.92
ACGTcount: A:0.26, C:0.31, G:0.31, T:0.12
Consensus pattern (116 bp):
GAGCCACCACACCACCCTGGACCTAGTGGTAGGGGGATGAGCCACCACATCACCCTGAACCTAGT
GGTATGAGGAAGGAACCACCACATCACCCCGGACCTGGTGGTAGGAGAGAG
Found at i:32153393 original size:40 final size:40
Alignment explanation
Indices: 32153323--32153400 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
32153313 GCCATATATA
* * * *
32153323 TATATAGCCGAAGCTATTTTGATTCACACACTATGTGCTT
1 TATATAGCCGAAGCTATCTCGATACACACACTAAGTGCTT
*
32153363 TATATAGCCGAAGCTATCTCGATACGCACACTAAGTGC
1 TATATAGCCGAAGCTATCTCGATACACACACTAAGTGC
32153401 CAAACATAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (40 bp):
TATATAGCCGAAGCTATCTCGATACACACACTAAGTGCTT
Found at i:32161089 original size:26 final size:26
Alignment explanation
Indices: 32161037--32161218 Score: 93
Period size: 27 Copynumber: 6.7 Consensus size: 26
32161027 AAATTGTTAC
32161037 AGCACTAAGTGTGGCGAAATTTGACTATGT
1 AGCACTAAGTGT-GCG--ATTT-ACTATGT
32161067 AGCACTAAGTGTGCGATTTACTATGT
1 AGCACTAAGTGTGCGATTTACTATGT
* * * * **
32161093 TGCAACTAGGT-TGCGAAATGAAAATG-
1 AGC-ACTAAGTGTGCG-ATTTACTATGT
* * *
32161119 ATGCACTAGGTCTCGCGATTTGACCAT-T
1 A-GCACTAAGTGT-GCGATTT-ACTATGT
* * *
32161147 GGCACTAAGTTGTGCGAGATTATTATGTT
1 AGCACTAAG-TGTGCGA-TTTACTATG-T
* *
32161176 AGCACTAAGTGTGCGAATTGA-TACGT
1 AGCACTAAGTGTGCG-ATTTACTATGT
32161202 AGCACTAAGTGTGCGAT
1 AGCACTAAGTGTGCGAT
32161219 GTTGATTATT
Statistics
Matches: 119, Mismatches: 21, Indels: 29
0.70 0.12 0.17
Matches are distributed among these distances:
25 2 0.02
26 36 0.30
27 38 0.32
28 18 0.15
29 13 0.11
30 12 0.10
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTTACTATGT
Found at i:32161235 original size:30 final size:28
Alignment explanation
Indices: 32161148--32161247 Score: 98
Period size: 26 Copynumber: 3.5 Consensus size: 28
32161138 TTGACCATTG
*
32161148 GCACTAAGTTGTGCGAGATT-ATTATGTTA
1 GCACTAAG-TGTGCGAG-TTGATTATATTA
* **
32161177 GCACTAAGTGTGCGAATTGA-TA-CGTA
1 GCACTAAGTGTGCGAGTTGATTATATTA
32161203 GCACTAAGTGTGCGATGTTGATTATTATTA
1 GCACTAAGTGTGCGA-GTTGATTA-TATTA
*
32161233 GCACTGAGTGTGCGA
1 GCACTAAGTGTGCGA
32161248 ACTCAATATA
Statistics
Matches: 59, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
26 17 0.29
27 8 0.14
28 10 0.17
29 8 0.14
30 16 0.27
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTGATTATATTA
Found at i:32177361 original size:27 final size:27
Alignment explanation
Indices: 32177331--32177533 Score: 241
Period size: 27 Copynumber: 7.6 Consensus size: 27
32177321 ATATTGAGTC
* * * *
32177331 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
32177358 CGCACACTTAGTGCTACGTAATC-AAT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
32177384 CGCACACTTAGTGCTACATAGTCAATCT
1 CGCACACTTAGTGCTACATAGTCAA-AT
* * *
32177412 CGCACACTTAGTGCCACATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
32177439 CGCACACTTAGTGC-ATCAT-TTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
32177465 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
32177492 CGCACACTTAGTGCTACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
32177519 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32177534 GTACAATTTA
Statistics
Matches: 155, Mismatches: 16, Indels: 10
0.86 0.09 0.06
Matches are distributed among these distances:
26 46 0.30
27 85 0.55
28 24 0.15
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:32183968 original size:57 final size:57
Alignment explanation
Indices: 32183880--32184091 Score: 203
Period size: 57 Copynumber: 3.7 Consensus size: 57
32183870 GTATTACAGG
* *
32183880 ATTACCAGTCCAGGCTAAATCCTTTATGTAACGTATGCTCAGAAGAACTAAATTAGT
1 ATTACCAGTCCAGGCTAAATCCTATATGTAACATATGCTCAGAAGAACTAAATTAGT
* * * * * * ** *
32183937 ATTACTAGTCCAGGTTAAATCCTA-ATTGTAACATATACTCAAGAGGAATTATACCAGG
1 ATTACCAGTCCAGGCTAAATCCTATA-TGTAACATATGCTC-AGAAGAACTAAATTAGT
* * * * ** *
32183995 ATTACCCGTTCGGGCTAAATCCTTTATGTAATGTATGCTCAGAAGAACTCAATTAGT
1 ATTACCAGTCCAGGCTAAATCCTATATGTAACATATGCTCAGAAGAACTAAATTAGT
* *
32184052 ATTACTAGTCCAAGCTAAATCCTA-ATTGTAACATATGCTC
1 ATTACCAGTCCAGGCTAAATCCTATA-TGTAACATATGCTC
32184092 GAGAGAAATT
Statistics
Matches: 116, Mismatches: 35, Indels: 8
0.73 0.22 0.05
Matches are distributed among these distances:
56 2 0.02
57 73 0.63
58 40 0.34
59 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.31
Consensus pattern (57 bp):
ATTACCAGTCCAGGCTAAATCCTATATGTAACATATGCTCAGAAGAACTAAATTAGT
Found at i:32184016 original size:58 final size:57
Alignment explanation
Indices: 32183876--32184132 Score: 178
Period size: 57 Copynumber: 4.5 Consensus size: 57
32183866 TATTGTATTA
* * * * * * * *
32183876 CAGGATTACCAGTCCAGGCTAAATCCT-TTATGTAACGTATGCTCAGAAGAACTAAAT
1 CAGGATTACCCGTTCGGGCTAAATCCTAAT-TGTAACATATGCTCAGAGGAATTATAT
* * ** * * * * *
32183933 TAGTATTACTAGTCCAGGTTAAATCCTAATTGTAACATATACTCAAGAGGAATTATAC
1 CAGGATTACCCGTTCGGGCTAAATCCTAATTGTAACATATGCTC-AGAGGAATTATAT
* ** * *
32183991 CAGGATTACCCGTTCGGGCTAAATCCT-TTATGTAATGTATGCTCAGAAGAACTCA-AT
1 CAGGATTACCCGTTCGGGCTAAATCCTAAT-TGTAACATATGCTCAGAGGAA-TTATAT
* * ** * ** *
32184048 TAGTATTACTAGTCCAAGCTAAATCCTAATTGTAACATATGCTCGAGAGAAATTATAT
1 CAGGATTACCCGTTCGGGCTAAATCCTAATTGTAACATATGCTC-AGAGGAATTATAT
32184106 CAGGATTACCCGTTCGGGCTAAATCCT
1 CAGGATTACCCGTTCGGGCTAAATCCT
32184133 TTCTATAATG
Statistics
Matches: 148, Mismatches: 45, Indels: 13
0.72 0.22 0.06
Matches are distributed among these distances:
57 77 0.52
58 71 0.48
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (57 bp):
CAGGATTACCCGTTCGGGCTAAATCCTAATTGTAACATATGCTCAGAGGAATTATAT
Found at i:32184142 original size:115 final size:115
Alignment explanation
Indices: 32183876--32184134 Score: 419
Period size: 115 Copynumber: 2.3 Consensus size: 115
32183866 TATTGTATTA
* * * *
32183876 CAGGATTACCAGTCCAGGCTAAATCCTTTATGTAACGTATGCTCAGAAGAACTAAATTAGTATTA
1 CAGGATTACCCGTTCGGGCTAAATCCTTTATGTAATGTATGCTCAGAAGAACTAAATTAGTATTA
* * *
32183941 CTAGTCCAGGTTAAATCCTAATTGTAACATATACTCAAGAGGAATTATAC
66 CTAGTCCAAGCTAAATCCTAATTGTAACATATACTCAAGAGAAATTATAC
*
32183991 CAGGATTACCCGTTCGGGCTAAATCCTTTATGTAATGTATGCTCAGAAGAACTCAATTAGTATTA
1 CAGGATTACCCGTTCGGGCTAAATCCTTTATGTAATGTATGCTCAGAAGAACTAAATTAGTATTA
* * *
32184056 CTAGTCCAAGCTAAATCCTAATTGTAACATATGCTCGAGAGAAATTATAT
66 CTAGTCCAAGCTAAATCCTAATTGTAACATATACTCAAGAGAAATTATAC
32184106 CAGGATTACCCGTTCGGGCTAAATCCTTT
1 CAGGATTACCCGTTCGGGCTAAATCCTTT
32184135 CTATAATGAG
Statistics
Matches: 133, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
115 133 1.00
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.31
Consensus pattern (115 bp):
CAGGATTACCCGTTCGGGCTAAATCCTTTATGTAATGTATGCTCAGAAGAACTAAATTAGTATTA
CTAGTCCAAGCTAAATCCTAATTGTAACATATACTCAAGAGAAATTATAC
Found at i:32184985 original size:31 final size:31
Alignment explanation
Indices: 32184950--32185013 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
32184940 GACAAGGAAA
*
32184950 CTTACCCAATTAAGCCTTGAAAGTTTCTTCT
1 CTTACCCAATTAAACCTTGAAAGTTTCTTCT
*
32184981 CTTACCCAATTAAACCTTGAAATTTTCTTCT
1 CTTACCCAATTAAACCTTGAAAGTTTCTTCT
32185012 CT
1 CT
32185014 CTCTCCTAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.27, C:0.27, G:0.06, T:0.41
Consensus pattern (31 bp):
CTTACCCAATTAAACCTTGAAAGTTTCTTCT
Found at i:32189161 original size:21 final size:22
Alignment explanation
Indices: 32189127--32189169 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
32189117 ATGTTTAATC
32189127 ATATTGAAAATTATAATATTTT
1 ATATTGAAAATTATAATATTTT
*
32189149 ATATT-AATATTATAATATTTT
1 ATATTGAAAATTATAATATTTT
32189170 TTAAAAGTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (22 bp):
ATATTGAAAATTATAATATTTT
Found at i:32202443 original size:12 final size:12
Alignment explanation
Indices: 32202426--32202450 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
32202416 CATTCAAGAG
32202426 CTTTCTCTTCTC
1 CTTTCTCTTCTC
32202438 CTTTCTCTTCTC
1 CTTTCTCTTCTC
32202450 C
1 C
32202451 AACTTTAGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56
Consensus pattern (12 bp):
CTTTCTCTTCTC
Found at i:32202601 original size:26 final size:26
Alignment explanation
Indices: 32202570--32202651 Score: 128
Period size: 26 Copynumber: 3.2 Consensus size: 26
32202560 TGAAATTTCC
* **
32202570 ATCATGAAATATTTATTTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
32202596 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
*
32202622 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
32202648 ATCA
1 ATCA
32202652 ATTTGTACCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.38, C:0.23, G:0.05, T:0.34
Consensus pattern (26 bp):
ATCATGAAACATTTACCTAACCCATT
Found at i:32206607 original size:24 final size:24
Alignment explanation
Indices: 32206575--32206633 Score: 82
Period size: 24 Copynumber: 2.5 Consensus size: 24
32206565 AGGGCACACA
* *
32206575 TAAACCTCCACGATACTCAGGTGG
1 TAAACCTCCACGACACTCAGGAGG
* *
32206599 TAAACCTCCAAGACACTCGGGAGG
1 TAAACCTCCACGACACTCAGGAGG
32206623 TAAACCTCCAC
1 TAAACCTCCAC
32206634 ATGTTGAGGG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.32, C:0.32, G:0.19, T:0.17
Consensus pattern (24 bp):
TAAACCTCCACGACACTCAGGAGG
Found at i:32206808 original size:24 final size:24
Alignment explanation
Indices: 32206776--32206835 Score: 93
Period size: 24 Copynumber: 2.5 Consensus size: 24
32206766 AGGGCACACA
*
32206776 TAAACCTCCACAACACTCAGGTGG
1 TAAACCTCCACAACACTCAGGGGG
* *
32206800 TAAACCTCCACGACATTCAGGGGG
1 TAAACCTCCACAACACTCAGGGGG
32206824 TAAACCTCCACA
1 TAAACCTCCACA
32206836 TGTTGAAGGA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.33, C:0.33, G:0.17, T:0.17
Consensus pattern (24 bp):
TAAACCTCCACAACACTCAGGGGG
Found at i:32206891 original size:171 final size:171
Alignment explanation
Indices: 32206674--32207267 Score: 861
Period size: 171 Copynumber: 3.4 Consensus size: 171
32206664 CCATGAAGCC
* * * *
32206674 ATTCCCTGGTGACAAACCATCTAAGGGTAATGAAAAGGGAGCACCTCATGAACCTAAACCTCCTC
1 ATTCCCTGGTGACAAACCATCCAAGGGTAAGGGAAAGGGAGCACCTCATGAACCCAAACCTCCTC
*
32206739 ATAGACACTTATTGAGTGTGGAAGTTGAGGGCACACATAAACCTCCACAACACTCAGGTGGTAAA
66 ATAGACACCTATTGAGTGTGGAAGTTGAGGGCACACATAAACCTCCACAACACTCAGGTGGTAAA
32206804 CCTCCACGACATTCAGGGGGTAAACCTCCACATGTTGAAGG
131 CCTCCACGACATTCAGGGGGTAAACCTCCACATGTTGAAGG
*
32206845 ATTCCCTGGTGACAAACCATCCAAGGGTAAGGGAAAGGGGGCACCTCATGAACCCAAACCTCCTC
1 ATTCCCTGGTGACAAACCATCCAAGGGTAAGGGAAAGGGAGCACCTCATGAACCCAAACCTCCTC
* *
32206910 ACAGACACCTATTGAGTGTGGAAGTTGAGGGCACACATAAACCTCCACAACAATCAGGTGGTAAA
66 ATAGACACCTATTGAGTGTGGAAGTTGAGGGCACACATAAACCTCCACAACACTCAGGTGGTAAA
32206975 CCTCCACGACATTCAGGGGGTAAACCTCCACATGTTGAAGG
131 CCTCCACGACATTCAGGGGGTAAACCTCCACATGTTGAAGG
32207016 ATTCCCTGGTGACAAACCATCCAAGGGTAAGGGAAAGGGAGCACCTCATGAACCCAAACCTCCTC
1 ATTCCCTGGTGACAAACCATCCAAGGGTAAGGGAAAGGGAGCACCTCATGAACCCAAACCTCCTC
* * * * *
32207081 ATAGACACCTATTGAATGTCGAAGTTGAGGACACACATAAGCCTCCACAACACTCAGGGGGTAAA
66 ATAGACACCTATTGAGTGTGGAAGTTGAGGGCACACATAAACCTCCACAACACTCAGGTGGTAAA
* * ** * * * **
32207146 CCTCCACATGTTGAAGGATTCCCCGACGGTAAGCCACC-CATG--AAACC
131 CCTCCAC-----G-A-CATT--CAGGGGGTAAACCTCCACATGTTGAAGG
* * *
32207193 ATTCCCCGGTGACAAACCATCCAAGGGTAAGGGAAAGGGAGTACCTCATGAACCTAAACCTCCTC
1 ATTCCCTGGTGACAAACCATCCAAGGGTAAGGGAAAGGGAGCACCTCATGAACCCAAACCTCCTC
32207258 ATAGACACCT
66 ATAGACACCT
32207268 CTTAAGTGAG
Statistics
Matches: 386, Mismatches: 28, Indels: 12
0.91 0.07 0.03
Matches are distributed among these distances:
171 292 0.76
176 1 0.00
177 75 0.19
178 3 0.01
179 4 0.01
180 11 0.03
ACGTcount: A:0.33, C:0.27, G:0.22, T:0.18
Consensus pattern (171 bp):
ATTCCCTGGTGACAAACCATCCAAGGGTAAGGGAAAGGGAGCACCTCATGAACCCAAACCTCCTC
ATAGACACCTATTGAGTGTGGAAGTTGAGGGCACACATAAACCTCCACAACACTCAGGTGGTAAA
CCTCCACGACATTCAGGGGGTAAACCTCCACATGTTGAAGG
Found at i:32206979 original size:24 final size:24
Alignment explanation
Indices: 32206947--32207006 Score: 93
Period size: 24 Copynumber: 2.5 Consensus size: 24
32206937 AGGGCACACA
*
32206947 TAAACCTCCACAACAATCAGGTGG
1 TAAACCTCCACAACAATCAGGGGG
* *
32206971 TAAACCTCCACGACATTCAGGGGG
1 TAAACCTCCACAACAATCAGGGGG
32206995 TAAACCTCCACA
1 TAAACCTCCACA
32207007 TGTTGAAGGA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.35, C:0.32, G:0.17, T:0.17
Consensus pattern (24 bp):
TAAACCTCCACAACAATCAGGGGG
Found at i:32208491 original size:18 final size:19
Alignment explanation
Indices: 32208461--32208501 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
32208451 ATTTAAAATT
* *
32208461 ATAAAATTTAAAAGTTGAA
1 ATAAAATTTAAAAATTAAA
32208480 ATAAAA-TTAAAAATTAAA
1 ATAAAATTTAAAAATTAAA
32208498 ATAA
1 ATAA
32208502 TTATAATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (19 bp):
ATAAAATTTAAAAATTAAA
Found at i:32211479 original size:24 final size:24
Alignment explanation
Indices: 32211447--32211496 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
32211437 TCCACCACAC
32211447 CTCTCTTCTTCTCCCTCTTCTTTT
1 CTCTCTTCTTCTCCCTCTTCTTTT
* * * *
32211471 CTCTTTTCTTCTTCTTTTTCTTTT
1 CTCTCTTCTTCTCCCTCTTCTTTT
32211495 CT
1 CT
32211497 TCATTCCTTC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (24 bp):
CTCTCTTCTTCTCCCTCTTCTTTT
Found at i:32211494 original size:17 final size:18
Alignment explanation
Indices: 32211462--32211513 Score: 70
Period size: 18 Copynumber: 2.8 Consensus size: 18
32211452 TTCTTCTCCC
32211462 TCTTCTTTTCTCTTTTCT
1 TCTTCTTTTCTCTTTTCT
32211480 TCTTCTTTT-TCTTTTCT
1 TCTTCTTTTCTCTTTTCT
32211497 TCATTCCTTCTTCTCTT
1 TC-TT-CTT-TTCTCTT
32211514 GTCATCGCAC
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
17 10 0.33
18 11 0.37
19 3 0.10
20 2 0.07
21 4 0.13
ACGTcount: A:0.02, C:0.29, G:0.00, T:0.69
Consensus pattern (18 bp):
TCTTCTTTTCTCTTTTCT
Found at i:32214112 original size:31 final size:30
Alignment explanation
Indices: 32214077--32214181 Score: 88
Period size: 31 Copynumber: 3.4 Consensus size: 30
32214067 TACTCACATT
32214077 AATATTAAATTAATAAAATACTATAAAGATA
1 AATATTAAATTAATAAAATACTAT-AAGATA
* * * * *
32214108 AATATTAAATCAA-AATTAATA-TCTCACATT
1 AATATTAAATTAATAA--AATACTATAAGATA
* *
32214138 AATATTAAATTAGTAAAATACAATCAAGATA
1 AATATTAAATTAATAAAATACTAT-AAGATA
*
32214169 ACTATTAAATTAA
1 AATATTAAATTAA
32214182 ATTAAATATT
Statistics
Matches: 55, Mismatches: 14, Indels: 10
0.70 0.18 0.13
Matches are distributed among these distances:
29 4 0.07
30 17 0.31
31 30 0.55
32 4 0.07
ACGTcount: A:0.56, C:0.08, G:0.03, T:0.33
Consensus pattern (30 bp):
AATATTAAATTAATAAAATACTATAAGATA
Found at i:32214190 original size:61 final size:61
Alignment explanation
Indices: 32214069--32214186 Score: 184
Period size: 61 Copynumber: 2.0 Consensus size: 61
32214059 ATTGAAATTA
*
32214069 CTCACATTAATATTAAATTAATAAAATACTATAAAGATAAATATTAAATCAAAATTAATAT
1 CTCACATTAATATTAAATTAATAAAATACAATAAAGATAAATATTAAATCAAAATTAATAT
* * * *
32214130 CTCACATTAATATTAAATTAGTAAAATACAATCAAGATAACTATTAAAT-TAAATTAA
1 CTCACATTAATATTAAATTAATAAAATACAATAAAGATAAATATTAAATCAAAATTAA
32214187 ATATTAAATT
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
60 7 0.13
61 45 0.87
ACGTcount: A:0.54, C:0.09, G:0.03, T:0.34
Consensus pattern (61 bp):
CTCACATTAATATTAAATTAATAAAATACAATAAAGATAAATATTAAATCAAAATTAATAT
Found at i:32218887 original size:37 final size:36
Alignment explanation
Indices: 32218842--32218943 Score: 107
Period size: 37 Copynumber: 2.8 Consensus size: 36
32218832 AGATACGAGC
* *
32218842 ACAG-TAATCCACTCGATAACATACCAAACACTCGTA
1 ACAGCTAATCCAC-CGATAACACACCAAACACTCATA
* * **
32218878 ACAGCTAATCCAACCGAAAACACGCCAAATGCTCATA
1 ACAGCTAATCC-ACCGATAACACACCAAACACTCATA
*
32218915 AAAGCTAATCCACCCGATAACACACCAAA
1 ACAGCTAATCCA-CCGATAACACACCAAA
32218944 ACAAGGACTA
Statistics
Matches: 54, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
36 5 0.09
37 47 0.87
38 2 0.04
ACGTcount: A:0.44, C:0.32, G:0.09, T:0.15
Consensus pattern (36 bp):
ACAGCTAATCCACCGATAACACACCAAACACTCATA
Found at i:32220490 original size:15 final size:16
Alignment explanation
Indices: 32220457--32220490 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
32220447 TTATGTGTTT
32220457 AAAATGTTTAAGTTAA
1 AAAATGTTTAAGTTAA
32220473 AAAATGTTTAAGTTAA
1 AAAATGTTTAAGTTAA
32220489 AA
1 AA
32220491 GGTTAATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.53, C:0.00, G:0.12, T:0.35
Consensus pattern (16 bp):
AAAATGTTTAAGTTAA
Found at i:32224756 original size:44 final size:46
Alignment explanation
Indices: 32224692--32224812 Score: 120
Period size: 47 Copynumber: 2.7 Consensus size: 46
32224682 AAGTGCTGAT
* ** * *
32224692 GCATGTCCCATACATTTCTTACACTAGCACGAACCTT-A-GCAGAG
1 GCATGTCCCAGACACGTCTTACACTAGCACCAACATTGAGGCAGAG
* * * * *
32224736 GCATGTCCCAGACACGTCTTACACCAGTTACCATCATTGAGGCCGAT
1 GCATGTCCCAGACACGTCTTACACTAG-CACCAACATTGAGGCAGAG
*
32224783 GCATGTCCTAGACACGTCTTACACTAGCAC
1 GCATGTCCCAGACACGTCTTACACTAGCAC
32224813 TCATCTCTAC
Statistics
Matches: 61, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
44 23 0.38
45 6 0.10
46 3 0.05
47 29 0.48
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.24
Consensus pattern (46 bp):
GCATGTCCCAGACACGTCTTACACTAGCACCAACATTGAGGCAGAG
Found at i:32224835 original size:47 final size:47
Alignment explanation
Indices: 32224736--32224855 Score: 122
Period size: 47 Copynumber: 2.5 Consensus size: 47
32224726 CTTAGCAGAG
* * * *
32224736 GCATGTCCCAGACACGTCTTACACCAGTTACCATCATTGAGGCCGAT
1 GCATGTCCTAGACACGTCTTACACTAGTCACCATCATTGACGCCGAT
32224783 GCATGTCCTAGACACGTCTTACACTAG-CACTCATC-TCT-ACGCCGAT
1 GCATGTCCTAGACACGTCTTACACTAGTCAC-CATCAT-TGACGCCGAT
*
32224829 GCCATGT-CTCAGACATGGTCTTACACT
1 G-CATGTCCT-AGACA-CGTCTTACACT
32224856 GGCTATTGTA
Statistics
Matches: 63, Mismatches: 5, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
46 13 0.21
47 40 0.63
48 10 0.16
ACGTcount: A:0.24, C:0.33, G:0.17, T:0.26
Consensus pattern (47 bp):
GCATGTCCTAGACACGTCTTACACTAGTCACCATCATTGACGCCGAT
Found at i:32224881 original size:94 final size:94
Alignment explanation
Indices: 32224780--32224953 Score: 271
Period size: 94 Copynumber: 1.9 Consensus size: 94
32224770 CATTGAGGCC
* * *
32224780 GATGCATGTCCTAGACACGTCTTACACTA-GCACTCATCTCTACG-CCGATGCCATGTCTCAGAC
1 GATGCATGTCCCAGACACGTCTTACACTAGGC-CTCATCTC-AAGACCGATGCCATGTCCCAGAC
32224843 ATGGTCTTACACTGGCTATTGTAATGTGGCT
64 ATGGTCTTACACTGGCTATTGTAATGTGGCT
* *
32224874 GATGCATGTCCCAGACACGTCTTACACTAGGCCTCGTCTCAAGACCGATGCTATGTCCCAGACAT
1 GATGCATGTCCCAGACACGTCTTACACTAGGCCTCATCTCAAGACCGATGCCATGTCCCAGACAT
32224939 GGTCTTACACTGGCT
66 GGTCTTACACTGGCT
32224954 CTCACATAAG
Statistics
Matches: 73, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
93 2 0.03
94 69 0.95
95 2 0.03
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (94 bp):
GATGCATGTCCCAGACACGTCTTACACTAGGCCTCATCTCAAGACCGATGCCATGTCCCAGACAT
GGTCTTACACTGGCTATTGTAATGTGGCT
Found at i:32231754 original size:47 final size:47
Alignment explanation
Indices: 32231691--32231811 Score: 215
Period size: 47 Copynumber: 2.6 Consensus size: 47
32231681 CCCTTCGGGA
* * *
32231691 CTTATCACATGTATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32231738 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32231785 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
32231812 TATTCAAATA
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.29, C:0.29, G:0.07, T:0.35
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32234578 original size:30 final size:30
Alignment explanation
Indices: 32234544--32234604 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 30
32234534 ATGGAGTAGA
* *
32234544 CCATGTGTC-ACAGAAGGCCTTGACACATGC
1 CCATGTGTCTAC-CAAGGCCTAGACACATGC
32234574 CCATGTGTCTACCAAGGCCTAGACACATGC
1 CCATGTGTCTACCAAGGCCTAGACACATGC
32234604 C
1 C
32234605 TGTGTGGACA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 26 0.93
31 2 0.07
ACGTcount: A:0.26, C:0.33, G:0.21, T:0.20
Consensus pattern (30 bp):
CCATGTGTCTACCAAGGCCTAGACACATGC
Found at i:32238222 original size:27 final size:27
Alignment explanation
Indices: 32238162--32238223 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
32238152 TTACCATTCC
* *
32238162 TTCAGAGTTCGCCACATATATTGTTCG
1 TTCAGATTTCACCACATATATTGTTCG
* *
32238189 TTCAGATTTCACCATATATATTGTTCT
1 TTCAGATTTCACCACATATATTGTTCG
32238216 TTCAGATT
1 TTCAGATT
32238224 GGCGGAAATA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.24, C:0.19, G:0.13, T:0.44
Consensus pattern (27 bp):
TTCAGATTTCACCACATATATTGTTCG
Found at i:32242981 original size:18 final size:18
Alignment explanation
Indices: 32242959--32243000 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
32242949 TTATTTAATT
32242959 AAAAAATTTA-AAAAGGA
1 AAAAAATTTATAAAAGGA
* *
32242976 AGAAAATTTATAAAATGA
1 AAAAAATTTATAAAAGGA
32242994 AAAAAAT
1 AAAAAAT
32243001 ATACAAACAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.69, C:0.00, G:0.10, T:0.21
Consensus pattern (18 bp):
AAAAAATTTATAAAAGGA
Found at i:32252875 original size:76 final size:76
Alignment explanation
Indices: 32252766--32252923 Score: 271
Period size: 76 Copynumber: 2.1 Consensus size: 76
32252756 TTTCAAAAAA
* ** *
32252766 CAAACAAAATATGTTATACTAACAAAATGATCCTATAGTTGTAAGATGTTAACCAACCATTTCAA
1 CAAAAAAAATATGTTATACTAACAAAATGATCCTATAGCAGTAAAATGTTAACCAACCATTTCAA
32252831 CAAATCATTTC
66 CAAATCATTTC
*
32252842 CAAAAAAAATATGTTATGCTAACAAAATGATCCTATAGCAGTAAAATGTTAACCAACCATTTCAA
1 CAAAAAAAATATGTTATACTAACAAAATGATCCTATAGCAGTAAAATGTTAACCAACCATTTCAA
32252907 CAAATCATTTC
66 CAAATCATTTC
32252918 CAAAAA
1 CAAAAA
32252924 CAAACAAAAT
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
76 77 1.00
ACGTcount: A:0.46, C:0.18, G:0.08, T:0.28
Consensus pattern (76 bp):
CAAAAAAAATATGTTATACTAACAAAATGATCCTATAGCAGTAAAATGTTAACCAACCATTTCAA
CAAATCATTTC
Found at i:32253256 original size:156 final size:156
Alignment explanation
Indices: 32253016--32253376 Score: 383
Period size: 158 Copynumber: 2.3 Consensus size: 156
32253006 TATGCCATCC
* * *
32253016 TTTTTTGGCTTCTAGTTCTCATACTCGTACCAGACTGAGAAC-AAAAATCAGAACCCCAAACTAG
1 TTTTTTGGCTTCTAGTTCT-GTACTCGTACCAGACTAAGACCAAAAAATCAGAACCCCAAACTAG
* ** * * *
32253080 ATTTAAATAATTCGAAATTGACATTAAAAT-T-T-T-TTTTATACCTGTGATCCAGTTGTGTTAT
65 ATTAAAATAATTCGAAATTGACATTAAAATCTGTATATGATATACATGTGATCCAGTTGTATTAG
* * * * * *
32253141 GCTTAATGCATAGTTTTCTATTGTTCTTTT
130 GCTGAATGAAT-GGTGT-TA-TGTTATTAT
* * **
32253171 TTTTTTGGCTTATAGTTCATGTACTCGTACCAGACTAAGACCAAAAAATCAGAATCCCAAGTTAG
1 TTTTTTGGCTTCTAGTTC-TGTACTCGTACCAGACTAAGACCAAAAAATCAGAACCCCAAACTAG
* *
32253236 ATTAAAATATTTTTG-AATTGACATTAAAATCGTGTATATGATATACATGTGATCCAGTTGTATT
65 ATTAAAATA-ATTCGAAATTGACATTAAAATC-TGTATATGATATACATGTGATCCAGTTGTATT
32253300 AGGCTGAATGAATGGTGTTATGTTATTAT
128 AGGCTGAATGAATGGTGTTATGTTATTAT
* * * *
32253329 TTTTTGGGATTCTAGTTTTTGTACTCGTACCAAACTAAGACCAAAAAA
1 TTTTTTGGCTTCTAG-TTCTGTACTCGTACCAGACTAAGACCAAAAAA
32253377 ACCAAAACCC
Statistics
Matches: 171, Mismatches: 26, Indels: 15
0.81 0.12 0.07
Matches are distributed among these distances:
155 36 0.21
156 43 0.25
157 3 0.02
158 48 0.28
159 5 0.03
160 4 0.02
161 32 0.19
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.39
Consensus pattern (156 bp):
TTTTTTGGCTTCTAGTTCTGTACTCGTACCAGACTAAGACCAAAAAATCAGAACCCCAAACTAGA
TTAAAATAATTCGAAATTGACATTAAAATCTGTATATGATATACATGTGATCCAGTTGTATTAGG
CTGAATGAATGGTGTTATGTTATTAT
Found at i:32265798 original size:76 final size:76
Alignment explanation
Indices: 32265682--32265826 Score: 168
Period size: 76 Copynumber: 1.9 Consensus size: 76
32265672 AATGCAAGTC
* * *** *
32265682 TTAAATGATGCTAATGTATTAATGCAAAGCATTGGCTAAAGACACATTCAATAAACAAGAA-ATA
1 TTAAAAGATGCTAATGTATTAATGCAAAACATTAAATAAAGACACATTCAACAAACAA-AACATA
32265746 TAATGCACATTT
65 TAATGCACATTT
* ** *
32265758 TTAAAAGATG-TAGATGTATTAATGCAAAATATTAAATAAAGATGCATTTAACAAACAAAACATA
1 TTAAAAGATGCTA-ATGTATTAATGCAAAACATTAAATAAAGACACATTCAACAAACAAAACATA
32265822 TAATG
65 TAATG
32265827 AAGCAGATCA
Statistics
Matches: 57, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
75 4 0.07
76 53 0.93
ACGTcount: A:0.48, C:0.10, G:0.12, T:0.29
Consensus pattern (76 bp):
TTAAAAGATGCTAATGTATTAATGCAAAACATTAAATAAAGACACATTCAACAAACAAAACATAT
AATGCACATTT
Found at i:32266381 original size:42 final size:42
Alignment explanation
Indices: 32266329--32266430 Score: 132
Period size: 42 Copynumber: 2.4 Consensus size: 42
32266319 CCCTCACCTA
* * * *
32266329 AACCTTCACCACCTCCTTCACCCTTACCACCTTTACTGCCAAC
1 AACC-TCACCACCTCCCTCACCATCACCACATTTACTGCCAAC
*
32266372 AACCTCACCACCTCCCTCACCATCACCACATTTATTGCCAAC
1 AACCTCACCACCTCCCTCACCATCACCACATTTACTGCCAAC
*
32266414 AACCTTACCACCCTCCC
1 AACCTCACCA-CCTCCC
32266431 CAGCTTCATT
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
42 42 0.81
43 10 0.19
ACGTcount: A:0.25, C:0.50, G:0.02, T:0.23
Consensus pattern (42 bp):
AACCTCACCACCTCCCTCACCATCACCACATTTACTGCCAAC
Found at i:32274766 original size:29 final size:29
Alignment explanation
Indices: 32274731--32274792 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 29
32274721 CCTGGCCATG
*
32274731 TGGTTGGCCGTGTACGAGACACGGCCGTA
1 TGGTTGGCCATGTACGAGACACGGCCGTA
* * *
32274760 TGGTTGGCCATGTCCGAGATACGGCCGTG
1 TGGTTGGCCATGTACGAGACACGGCCGTA
32274789 TGGT
1 TGGT
32274793 CGACAAAGGC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.15, C:0.23, G:0.39, T:0.24
Consensus pattern (29 bp):
TGGTTGGCCATGTACGAGACACGGCCGTA
Found at i:32284984 original size:26 final size:28
Alignment explanation
Indices: 32284925--32284996 Score: 85
Period size: 28 Copynumber: 2.6 Consensus size: 28
32284915 CATAATACGG
* * *
32284925 TATT-AAAAAATATATATATGATATAGT
1 TATTAAAAAAATATATACATGAGATAGA
32284952 TATTAAAAAAATATATACATGAGATA-A
1 TATTAAAAAAATATATACATGAGATAGA
*
32284979 TATAAAAAAAATAATATA
1 TATTAAAAAAAT-ATATA
32284997 GTGTTCGGAA
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
27 15 0.38
28 24 0.62
ACGTcount: A:0.60, C:0.01, G:0.06, T:0.33
Consensus pattern (28 bp):
TATTAAAAAAATATATACATGAGATAGA
Found at i:32285258 original size:21 final size:21
Alignment explanation
Indices: 32285120--32285330 Score: 81
Period size: 23 Copynumber: 9.3 Consensus size: 21
32285110 GTACCTATTA
*
32285120 ATAATATTATATAAATATATAC
1 ATAATATAATA-AAATATATAC
* * *
32285142 CTATATATATTAAAGATGTATAC
1 ATA-ATATAATAAA-ATATATAC
*
32285165 GTATAATGAT-ATCAAAAGTATGTAC
1 --ATAAT-ATAAT-AAAA-TATATAC
*
32285190 ATAATATAGAGTTAAAAATACATAC
1 ATAATATA-A--T-AAAATATATAC
* * *
32285215 ATAATGTAGTTATTAAAAAATATAT
1 ATAA--TA--TAATAAAATATATAC
32285240 ATAATATAATAAAATATATGA-
1 ATAATATAATAAAATATAT-AC
*
32285261 ATAATAGGATATAAAATATATAC
1 ATAATA-TA-ATAAAATATATAC
*
32285284 ATAATAT-ATAAAAAAATATAC
1 ATAATATAAT-AAAATATATAC
* *
32285305 -T-ATTTAAAAAAATAATATAC
1 ATAATATAATAAAAT-ATATAC
32285325 ATAATA
1 ATAATA
32285331 GTATATTAAG
Statistics
Matches: 141, Mismatches: 24, Indels: 48
0.66 0.11 0.23
Matches are distributed among these distances:
19 7 0.05
20 10 0.07
21 28 0.20
22 11 0.08
23 37 0.26
24 5 0.04
25 33 0.23
26 6 0.04
27 2 0.01
29 2 0.01
ACGTcount: A:0.55, C:0.05, G:0.06, T:0.34
Consensus pattern (21 bp):
ATAATATAATAAAATATATAC
Found at i:32285413 original size:3 final size:3
Alignment explanation
Indices: 32285400--32285567 Score: 57
Period size: 3 Copynumber: 55.0 Consensus size: 3
32285390 TATAACAATG
* * *
32285400 ATA AAA ATA ATA ATA ATA GTG A-A ATA ATA A-A TATA ATA ATA GA-A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA -ATA
* * *
32285444 ATG ATA ATA CTA CATA AAA AGTA TATA TATA CATA TATA ATA A-A ATA
1 ATA ATA ATA ATA -ATA ATA A-TA -ATA -ATA -ATA -ATA ATA ATA ATA
* * * *
32285491 TATA CTA ATA TTA ATA ATGA AT- ATA AT- ATT ATA ATA CTA ATA ATA
1 -ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
32285536 ACA AT- ATA A-A ATTA A-A ATA ACTA AAA ATA ATA
1 ATA ATA ATA ATA A-TA ATA ATA A-TA ATA ATA ATA
32285568 CCATATGTAA
Statistics
Matches: 122, Mismatches: 25, Indels: 36
0.67 0.14 0.20
Matches are distributed among these distances:
2 15 0.12
3 78 0.64
4 28 0.23
5 1 0.01
ACGTcount: A:0.61, C:0.04, G:0.04, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:32285494 original size:26 final size:25
Alignment explanation
Indices: 32285457--32285543 Score: 67
Period size: 28 Copynumber: 3.4 Consensus size: 25
32285447 ATAATACTAC
32285457 ATAAAA-AGTATATATATACATATATA
1 ATAAAATA-TATATATATACATA-ATA
32285483 ATAAAATATATACTAATATTA-ATAATGA
1 ATAAAATATATA-T-ATA-TACATAAT-A
*
32285511 ATATAATAT-TATA-ATAC-TAATA
1 ATAAAATATATATATATACATAATA
32285533 ATAACAATATA
1 ATAA-AATATA
32285544 AAATTAAAAT
Statistics
Matches: 51, Mismatches: 2, Indels: 18
0.72 0.03 0.25
Matches are distributed among these distances:
22 4 0.08
23 11 0.22
24 1 0.02
25 1 0.02
26 11 0.22
27 6 0.12
28 15 0.29
29 2 0.04
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.36
Consensus pattern (25 bp):
ATAAAATATATATATATACATAATA
Found at i:32285501 original size:20 final size:21
Alignment explanation
Indices: 32285468--32285507 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
32285458 TAAAAAGTAT
32285468 ATATATACATATA-TAATAAA
1 ATATATACATATATTAATAAA
32285488 ATATATAC-TAATATTAATAA
1 ATATATACAT-ATATTAATAA
32285508 TGAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 1 0.06
20 11 0.61
21 6 0.33
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (21 bp):
ATATATACATATATTAATAAA
Found at i:32285541 original size:23 final size:23
Alignment explanation
Indices: 32285447--32285542 Score: 56
Period size: 26 Copynumber: 4.0 Consensus size: 23
32285437 AATAGAAATG
*
32285447 ATAATACTACATAA-AAAGTA-T
1 ATAATACTACATAATAAAATATT
*
32285468 ATATATACATATATAATAAAATATAT
1 ATA-ATAC-TACATAATAAAATAT-T
*
32285494 ACTAATATTA-ATAATGAATATAATATT
1 A-TAATACTACATAAT--A-A-AATATT
32285521 ATAATACTA-ATAATAACAATAT
1 ATAATACTACATAATAA-AATAT
32285543 AAAATTAAAA
Statistics
Matches: 60, Mismatches: 5, Indels: 18
0.72 0.06 0.22
Matches are distributed among these distances:
21 3 0.05
22 4 0.07
23 12 0.20
24 11 0.18
25 2 0.03
26 18 0.30
27 5 0.08
28 5 0.08
ACGTcount: A:0.56, C:0.06, G:0.02, T:0.35
Consensus pattern (23 bp):
ATAATACTACATAATAAAATATT
Found at i:32285541 original size:28 final size:29
Alignment explanation
Indices: 32285510--32285565 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 29
32285500 ATTAATAATG
* * *
32285510 AATATAATATTATAAT-ACTAATAATAAC
1 AATATAAAATTAAAATAACTAAAAATAAC
32285538 AATATAAAATTAAAATAACTAAAAATAA
1 AATATAAAATTAAAATAACTAAAAATAA
32285566 TACCATATGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 14 0.58
29 10 0.42
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.30
Consensus pattern (29 bp):
AATATAAAATTAAAATAACTAAAAATAAC
Found at i:32287426 original size:80 final size:80
Alignment explanation
Indices: 32287342--32287738 Score: 302
Period size: 80 Copynumber: 5.0 Consensus size: 80
32287332 ATGAGTTGAG
* *
32287342 TTTTTGGAAAACAGAAACAAAAAATACCTCAGTGTGTGACCCGAGGCTCAACTCACCTCTCGCAA
1 TTTTTGAAAAACAGAAACAAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAA
32287407 TATGAGTTGATTTTT
66 TATGAGTTGATTTTT
* *
32287422 TTTTTGAAAAATAGAAACTAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAA
1 TTTTTGAAAAACAGAAACAAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAA
32287487 TATGAGTTGATTTTT
66 TATGAGTTGATTTTT
**** * * * * * *
32287502 TTGAAAAACATAAACTGAAAAACAGAATTTGAAAATACCTTA--GTGTGTCCTGATGATCAACTC
1 TT-TTTGA-A-AAAC--AGAAAC--AA----AAAATACCTCAGCGTGTGACCCGAGGCTCAACTC
32287565 ACCTCTCGCAATATGAGTTGA---TT
55 ACCTCTCGCAATATGAGTTGATTTTT
* * * *** * * *
32287588 TTTTTGAAAAGCCGACATTGAAAATACCTCAGC--GTG-CCCTAAGGCTCAACTCACCTTTAGCA
1 TTTTTGAAAAACAGAAACAAAAAATACCTCAGCGTGTGACCC-GAGGCTCAACTCACCTCTCGCA
*
32287650 ATATGAGTT-A----A
65 ATATGAGTTGATTTTT
* *** * *
32287661 TTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAA
1 TTTTTGAAAAACAGAAACAAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAA
*
32287724 TATGAGTTAATTTTT
66 TATGAGTTGATTTTT
32287739 GAAAACAAAA
Statistics
Matches: 251, Mismatches: 45, Indels: 44
0.74 0.13 0.13
Matches are distributed among these distances:
73 56 0.22
74 6 0.02
75 41 0.16
80 78 0.31
81 3 0.01
82 1 0.00
83 6 0.02
84 1 0.00
85 6 0.02
86 4 0.02
87 1 0.00
89 38 0.15
91 10 0.04
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (80 bp):
TTTTTGAAAAACAGAAACAAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAA
TATGAGTTGATTTTT
Found at i:32287706 original size:73 final size:72
Alignment explanation
Indices: 32287520--32287750 Score: 300
Period size: 73 Copynumber: 3.2 Consensus size: 72
32287510 CATAAACTGA
* * * * *
32287520 AAAACAGAATTTGAAAATACCTTAGTGTGTCCTGATGATCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT-
*
32287585 ATTTTTTTG
65 A-ATTTTTG
* * * * * *
32287594 AAAAGCCGACATTGAAAATACCTCAGCGTGCCCTAAGGCTCAACTCACCTTTAGCAATATGAGTT
1 AAAA-CAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
32287659 AATTTTTG
65 AATTTTTG
*
32287667 ACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 A-AAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
32287732 AATTTTTG
65 AATTTTTG
*
32287740 AAAACAAAAAT
1 AAAACAGAAAT
32287751 AAAAACATCA
Statistics
Matches: 135, Mismatches: 20, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
72 9 0.07
73 69 0.51
74 8 0.06
75 49 0.36
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (72 bp):
AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTA
ATTTTTG
Found at i:32299750 original size:13 final size:13
Alignment explanation
Indices: 32299729--32299769 Score: 55
Period size: 15 Copynumber: 2.9 Consensus size: 13
32299719 ATAATAGAAA
32299729 ATAACAATATATAC
1 ATAA-AATATATAC
32299743 ATAAAATATATATAC
1 AT-AAA-ATATATAC
32299758 ATAAAATATATA
1 ATAAAATATATA
32299770 TACATATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
13 7 0.28
14 6 0.24
15 12 0.48
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.32
Consensus pattern (13 bp):
ATAAAATATATAC
Found at i:32299755 original size:15 final size:15
Alignment explanation
Indices: 32299735--32299775 Score: 82
Period size: 15 Copynumber: 2.7 Consensus size: 15
32299725 GAAAATAACA
32299735 ATATATACATAAAAT
1 ATATATACATAAAAT
32299750 ATATATACATAAAAT
1 ATATATACATAAAAT
32299765 ATATATACATA
1 ATATATACATA
32299776 TATATATGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (15 bp):
ATATATACATAAAAT
Found at i:32300659 original size:22 final size:24
Alignment explanation
Indices: 32300634--32300678 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
32300624 AGAAACGATA
*
32300634 ATAC-TATATAA-AAAGTATATAT
1 ATACATATATAATAAAATATATAT
32300656 ATACATATATAATAAAATATATA
1 ATACATATATAATAAAATATATA
32300679 CTAATATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 4 0.20
23 7 0.35
24 9 0.45
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.36
Consensus pattern (24 bp):
ATACATATATAATAAAATATATAT
Found at i:32300678 original size:26 final size:25
Alignment explanation
Indices: 32300641--32300726 Score: 65
Period size: 28 Copynumber: 3.4 Consensus size: 25
32300631 ATAATACTAT
32300641 ATAAAA-AGTATATATATACATATATA
1 ATAAAATA-TATATATATACATA-ATA
32300667 ATAAAATATATACTAATATTA-ATAATGA
1 ATAAAATATATA-T-ATA-TACATAAT-A
*
32300695 ATATAATAT-TATA-ATAC-TAATA
1 ATAAAATATATATATATACATAATA
32300717 ATAACAATAT
1 ATAA-AATAT
32300727 GAAATTAAAA
Statistics
Matches: 51, Mismatches: 2, Indels: 17
0.73 0.03 0.24
Matches are distributed among these distances:
22 4 0.08
23 11 0.22
24 1 0.02
25 1 0.02
26 11 0.22
27 6 0.12
28 15 0.29
29 2 0.04
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.36
Consensus pattern (25 bp):
ATAAAATATATATATATACATAATA
Found at i:32300685 original size:20 final size:21
Alignment explanation
Indices: 32300652--32300691 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
32300642 TAAAAAGTAT
32300652 ATATATACATATA-TAATAAA
1 ATATATACATATATTAATAAA
32300672 ATATATAC-TAATATTAATAA
1 ATATATACAT-ATATTAATAA
32300692 TGAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 1 0.06
20 11 0.61
21 6 0.33
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (21 bp):
ATATATACATATATTAATAAA
Found at i:32300725 original size:23 final size:23
Alignment explanation
Indices: 32300631--32300726 Score: 72
Period size: 23 Copynumber: 4.0 Consensus size: 23
32300621 AATAGAAACG
*
32300631 ATAATACTATATAA-AAAGTA-T
1 ATAATACTATATAATAAAATATT
32300652 ATATATACATATATAATAAAATATAT
1 ATA-ATAC-TATATAATAAAATAT-T
* *
32300678 ACTAATATTAATAATGAATATAATATT
1 A-TAATACT-AT-AT-AATAAAATATT
32300705 ATAATACTA-ATAATAACAATAT
1 ATAATACTATATAATAA-AATAT
32300727 GAAATTAAAA
Statistics
Matches: 60, Mismatches: 5, Indels: 18
0.72 0.06 0.22
Matches are distributed among these distances:
21 3 0.05
22 8 0.13
23 14 0.23
24 5 0.08
25 2 0.03
26 13 0.22
27 6 0.10
28 9 0.15
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.36
Consensus pattern (23 bp):
ATAATACTATATAATAAAATATT
Found at i:32300725 original size:28 final size:29
Alignment explanation
Indices: 32300694--32300749 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 29
32300684 ATTAATAATG
* *
32300694 AATAT-AATATTATAAT-ACTAATAATAAC
1 AATATGAA-ATTAAAATAACTAAAAATAAC
32300722 AATATGAAATTAAAATAACTAAAAATAA
1 AATATGAAATTAAAATAACTAAAAATAA
32300750 TACCATATGT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 12 0.50
29 12 0.50
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.30
Consensus pattern (29 bp):
AATATGAAATTAAAATAACTAAAAATAAC
Found at i:32300839 original size:18 final size:18
Alignment explanation
Indices: 32300810--32300855 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
32300800 GACATAAAAA
*
32300810 AATAATAGTATT-GATAAT
1 AATAATAATATTAGA-AAT
*
32300828 ATTAATAATATTAGAAAT
1 AATAATAATATTAGAAAT
32300846 AATAATAATA
1 AATAATAATA
32300856 ATACTTAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 22 0.92
19 2 0.08
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.37
Consensus pattern (18 bp):
AATAATAATATTAGAAAT
Found at i:32301508 original size:19 final size:20
Alignment explanation
Indices: 32301454--32301508 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 20
32301444 TATATGAATG
32301454 AAAAAAATGAGAAGATGAAAA
1 AAAAAAATGA-AAGATGAAAA
*
32301475 AAAAAAGATTCGAAATATG-AAA
1 AAAAAA-A-T-GAAAGATGAAAA
32301497 AAAAAAATGAAA
1 AAAAAAATGAAA
32301509 ATCACCTATT
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
19 4 0.13
20 1 0.03
21 7 0.23
22 10 0.33
23 6 0.20
24 2 0.07
ACGTcount: A:0.71, C:0.02, G:0.15, T:0.13
Consensus pattern (20 bp):
AAAAAAATGAAAGATGAAAA
Found at i:32303220 original size:46 final size:46
Alignment explanation
Indices: 32303167--32303342 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
32303157 TATTTGGGCA
32303167 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* ** * *
32303213 TCCGAACTCGTTGAGTTGAGTTCGAGTT-GGTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* **
32303258 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
32303306 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
32303343 GTGGGTTACA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.58
47 26 0.25
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:32303322 original size:93 final size:93
Alignment explanation
Indices: 32303163--32303333 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
32303153 GGGATATTTG
*** *
32303163 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCATTGAG
*
32303228 TTGAGTTCGAGTTGGTGAGATGTAACTA
66 TTGAGTCCGAGTTGGTGAGATGTAACTA
* *
32303256 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCATTGAG
32303321 TTGAGTCCGAGTT
66 TTGAGTCCGAGTT
32303334 CACTTATGGG
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCATTGAG
TTGAGTCCGAGTTGGTGAGATGTAACTA
Found at i:32307891 original size:29 final size:30
Alignment explanation
Indices: 32307840--32307900 Score: 97
Period size: 29 Copynumber: 2.1 Consensus size: 30
32307830 ACTTATTTTA
32307840 TTGTTAATTTTGTTATTATTTTAAAGGAAT
1 TTGTTAATTTTGTTATTATTTTAAAGGAAT
* *
32307870 TTGTTAATTTT-TTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGAAT
32307899 TT
1 TT
32307901 ACTTATTAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 18 0.62
30 11 0.38
ACGTcount: A:0.26, C:0.02, G:0.13, T:0.59
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGGAAT
Found at i:32311722 original size:46 final size:46
Alignment explanation
Indices: 32311654--32311746 Score: 143
Period size: 46 Copynumber: 2.0 Consensus size: 46
32311644 TTTTATAACA
* *
32311654 TATACTAATTTGATATCTGAATTAAA-TGCACTTAATAATATTATTT
1 TATACTAATTTGATATCCGAATTAAATTG-ACTTAAGAATATTATTT
*
32311700 TATACTAATTTGATATCCGAATTAAATTGGCTTAAGAATATTATTT
1 TATACTAATTTGATATCCGAATTAAATTGACTTAAGAATATTATTT
32311746 T
1 T
32311747 CAAAATTCGC
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
46 41 0.95
47 2 0.05
ACGTcount: A:0.38, C:0.09, G:0.09, T:0.45
Consensus pattern (46 bp):
TATACTAATTTGATATCCGAATTAAATTGACTTAAGAATATTATTT
Found at i:32314945 original size:48 final size:48
Alignment explanation
Indices: 32314893--32315034 Score: 178
Period size: 48 Copynumber: 3.0 Consensus size: 48
32314883 GCCTCCTGTG
** *
32314893 CATGAACTTCCAAAGAAGCCTCCAACGTATAAACCTACGCCATCAATC
1 CATGAACTTCCAAAGAAGCCTCCAACGTATAAACCTAAACCACCAATC
* * *
32314941 CATGAACCTCCAAAGAAGCCTCCAATGTATAAACCTAAACCACCACTC
1 CATGAACTTCCAAAGAAGCCTCCAACGTATAAACCTAAACCACCAATC
* * * *
32314989 CATGAACTTCCAAAGAAGCCACCGA-TTCATGAACCTAAACCACCAA
1 CATGAACTTCCAAAGAAGCCTCCAACGT-ATAAACCTAAACCACCAA
32315035 AGCCACCAGT
Statistics
Matches: 81, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
47 1 0.01
48 80 0.99
ACGTcount: A:0.39, C:0.34, G:0.10, T:0.17
Consensus pattern (48 bp):
CATGAACTTCCAAAGAAGCCTCCAACGTATAAACCTAAACCACCAATC
Found at i:32315150 original size:177 final size:177
Alignment explanation
Indices: 32314943--32315290 Score: 552
Period size: 177 Copynumber: 2.0 Consensus size: 177
32314933 CATCAATCCA
* *
32314943 TGAACCTCCAAAGAAGCCTCCAATGTATAAACCTAAACCACCACTCCATGAACTTCCAAAGAAGC
1 TGAACCTCCAAAGAAGCCTCCAACGTATAAACCTAAACCACCACTCCATGAACCTCCAAAGAAGC
* * *
32315008 CACCGATTCATGAACCTAAACCACCAAAGCCACCAGTTCACGAACCTCCAAAGAAAGAGAAACCA
66 CACCGATGCATGAACCTAAACCACCAAAGCCACCAATCCACGAACCTCCAAAGAAAGAGAAACCA
* * *
32315073 GAACACAAGCCACCAATATATGAACCTCCGAAGAAACCACCAGTCCG
131 GAACACAAGCCACCAATATATGAACATCCAAAAAAACCACCAGTCCG
* * * *
32315120 TGAACCTTCAAAGAAGCCTCCAGCGTATAAACCTAAACCACCAGTTCATGAACCTCCAAAGAAGC
1 TGAACCTCCAAAGAAGCCTCCAACGTATAAACCTAAACCACCACTCCATGAACCTCCAAAGAAGC
*
32315185 CACCGATGCATGAATCTAAACCACCAAAGCCACCAATCCACGAACCTCCAAAGAAAGAGAAACCA
66 CACCGATGCATGAACCTAAACCACCAAAGCCACCAATCCACGAACCTCCAAAGAAAGAGAAACCA
* * *
32315250 GAACCCAAGCCACCAGTTTATGAACATCCAAAAAAACCACC
131 GAACACAAGCCACCAATATATGAACATCCAAAAAAACCACC
32315291 TTCTGGTCAC
Statistics
Matches: 155, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
177 155 1.00
ACGTcount: A:0.42, C:0.33, G:0.12, T:0.13
Consensus pattern (177 bp):
TGAACCTCCAAAGAAGCCTCCAACGTATAAACCTAAACCACCACTCCATGAACCTCCAAAGAAGC
CACCGATGCATGAACCTAAACCACCAAAGCCACCAATCCACGAACCTCCAAAGAAAGAGAAACCA
GAACACAAGCCACCAATATATGAACATCCAAAAAAACCACCAGTCCG
Found at i:32315204 original size:48 final size:47
Alignment explanation
Indices: 32315106--32315210 Score: 122
Period size: 48 Copynumber: 2.2 Consensus size: 47
32315096 ACCTCCGAAG
* * *
32315106 AAACCACCAGTCCGTGAACCTTCAAAGAAGCCTCCAGCGTATAAACCT
1 AAACCACCAGTCCATGAACCTCCAAAGAAGCCACCAGCG-ATAAACCT
* * *
32315154 AAACCACCAGTTCATGAACCTCCAAAGAAGCCACCGATGC-ATGAATCT
1 AAACCACCAGTCCATGAACCTCCAAAGAAGCCACC-A-GCGATAAACCT
32315202 AAACCACCA
1 AAACCACCA
32315211 AAGCCACCAA
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
48 46 0.94
49 1 0.02
50 2 0.04
ACGTcount: A:0.38, C:0.33, G:0.13, T:0.15
Consensus pattern (47 bp):
AAACCACCAGTCCATGAACCTCCAAAGAAGCCACCAGCGATAAACCT
Found at i:32316083 original size:2 final size:2
Alignment explanation
Indices: 32316076--32316100 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
32316066 AATATTTTTA
32316076 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
32316101 ATGATTAAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:32317672 original size:21 final size:21
Alignment explanation
Indices: 32317628--32317673 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
32317618 TATATAAGAA
* *
32317628 ATTTTAGTTTAACTTTTTTAG
1 ATTTTAGTTTAAATTTTTCAG
* *
32317649 ATTTTATTTTAAATTTTTCGG
1 ATTTTAGTTTAAATTTTTCAG
32317670 ATTT
1 ATTT
32317674 ATTCATTTGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.04, G:0.09, T:0.63
Consensus pattern (21 bp):
ATTTTAGTTTAAATTTTTCAG
Found at i:32323796 original size:27 final size:27
Alignment explanation
Indices: 32323773--32323826 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
32323763 AACTCGATTT
32323773 TGTGGTCCCGAAACCACATCTCGACTA
1 TGTGGTCCCGAAACCACATCTCGACTA
32323800 TGTGGTCCCGAAACCACATCTCGACTA
1 TGTGGTCCCGAAACCACATCTCGACTA
32323827 GGGTCAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.26, C:0.33, G:0.19, T:0.22
Consensus pattern (27 bp):
TGTGGTCCCGAAACCACATCTCGACTA
Found at i:32325238 original size:23 final size:22
Alignment explanation
Indices: 32325208--32325284 Score: 68
Period size: 22 Copynumber: 3.5 Consensus size: 22
32325198 ATTTGATATG
*
32325208 GTTTAAATGCTGGCAAAAGTAT
1 GTTTAAATGCTGCCAAAAGTAT
* * *
32325230 GTTTCAAATGTTGTC-AAAGTAA
1 GTTT-AAATGCTGCCAAAAGTAT
*
32325252 GTTTTAAATGTTGTCCAAAA-TAT
1 G-TTTAAATGCTG-CCAAAAGTAT
32325275 GTTTAAATGC
1 GTTTAAATGC
32325285 CATCCAAAGC
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
22 27 0.60
23 15 0.33
24 3 0.07
ACGTcount: A:0.35, C:0.09, G:0.18, T:0.38
Consensus pattern (22 bp):
GTTTAAATGCTGCCAAAAGTAT
Found at i:32325693 original size:35 final size:36
Alignment explanation
Indices: 32325587--32325695 Score: 96
Period size: 36 Copynumber: 3.1 Consensus size: 36
32325577 ACGTAGGGTG
* * * * *
32325587 CATTTATTTTTCAGTTATACCGACTAGTACTGGGCA
1 CATTTATTTGTCAGTTATATCGACCAATGCTGGGCA
* * * * * *
32325623 CACTCATTTGTCGGTT-TGATTGACCAACGCAGGGCA
1 CATTTATTTGTCAGTTAT-ATCGACCAATGCTGGGCA
32325659 CATTTATTTGTC-GTTATATCGACCAATGCTGGGCA
1 CATTTATTTGTCAGTTATATCGACCAATGCTGGGCA
32325694 CA
1 CA
32325696 CTCATTTTGT
Statistics
Matches: 55, Mismatches: 16, Indels: 5
0.72 0.21 0.07
Matches are distributed among these distances:
35 21 0.38
36 34 0.62
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (36 bp):
CATTTATTTGTCAGTTATATCGACCAATGCTGGGCA
Found at i:32325705 original size:36 final size:36
Alignment explanation
Indices: 32325616--32325702 Score: 106
Period size: 35 Copynumber: 2.4 Consensus size: 36
32325606 CCGACTAGTA
*
32325616 CTGGGCACACTCATTTGTCGGTTTGATTGACCAACG
1 CTGGGCACACTCATTTGTCGGTTTGATCGACCAACG
* * * *
32325652 CAGGGCACATTTATTTGTC-GTTAT-ATCGACCAATG
1 CTGGGCACACTCATTTGTCGGTT-TGATCGACCAACG
32325687 CTGGGCACACTCATTT
1 CTGGGCACACTCATTT
32325703 TGTGATGCCT
Statistics
Matches: 42, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
35 25 0.60
36 17 0.40
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.32
Consensus pattern (36 bp):
CTGGGCACACTCATTTGTCGGTTTGATCGACCAACG
Found at i:32325705 original size:72 final size:73
Alignment explanation
Indices: 32325550--32325705 Score: 192
Period size: 72 Copynumber: 2.2 Consensus size: 73
32325540 GAATGAATGA
* * ** * * *
32325550 ACACTCATTTT-TCGATTTTATCGACCAACGTAGGGTGCATTTATTTTTCAGTTATACCGACTAG
1 ACACTCATTTTGTCGATTTGATCGACCAACGCAGGGCACATTTATTTGTCAGTTATACCGACCAA
32325614 TACTGGGC
66 TACTGGGC
* * *
32325622 ACACTCA-TTTGTCGGTTTGATTGACCAACGCAGGGCACATTTATTTGTC-GTTATATCGACCAA
1 ACACTCATTTTGTCGATTTGATCGACCAACGCAGGGCACATTTATTTGTCAGTTATACCGACCAA
*
32325685 TGCTGGGC
66 TACTGGGC
32325693 ACACTCATTTTGT
1 ACACTCATTTTGT
32325706 GATGCCTCGA
Statistics
Matches: 71, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
71 28 0.39
72 43 0.61
ACGTcount: A:0.23, C:0.22, G:0.19, T:0.36
Consensus pattern (73 bp):
ACACTCATTTTGTCGATTTGATCGACCAACGCAGGGCACATTTATTTGTCAGTTATACCGACCAA
TACTGGGC
Found at i:32327852 original size:23 final size:23
Alignment explanation
Indices: 32327822--32327873 Score: 104
Period size: 23 Copynumber: 2.3 Consensus size: 23
32327812 TATAATCTTC
32327822 CATGTATATATTTTGTATTGTCT
1 CATGTATATATTTTGTATTGTCT
32327845 CATGTATATATTTTGTATTGTCT
1 CATGTATATATTTTGTATTGTCT
32327868 CATGTA
1 CATGTA
32327874 CATACTATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.23, C:0.10, G:0.13, T:0.54
Consensus pattern (23 bp):
CATGTATATATTTTGTATTGTCT
Found at i:32331129 original size:36 final size:35
Alignment explanation
Indices: 32331065--32331188 Score: 115
Period size: 36 Copynumber: 3.5 Consensus size: 35
32331055 TACCGACCAG
* * * *
32331065 TTGTCAGTTATACTGATCAGTGTTGGGCACACTCAT
1 TTGTCAGTTTTACCGACCAG-GCTGGGCACACTCAT
* *
32331101 TTGTCAGTTTTACCGACCA-GCATAGGGCACATTTAT
1 TTGTCAGTTTTACCGACCAGGC-T-GGGCACACTCAT
* * *
32331137 TTTTCAGTTATACCAACCAGTGCTGGGCACACTCAT
1 TTGTCAGTTTTACCGACCAG-GCTGGGCACACTCAT
*
32331173 TTGTCAATTTTACCGA
1 TTGTCAGTTTTACCGA
32331189 GCAACGCATA
Statistics
Matches: 69, Mismatches: 15, Indels: 8
0.75 0.16 0.09
Matches are distributed among these distances:
34 1 0.01
35 1 0.01
36 64 0.93
37 1 0.01
38 2 0.03
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.35
Consensus pattern (35 bp):
TTGTCAGTTTTACCGACCAGGCTGGGCACACTCAT
Found at i:32331882 original size:228 final size:226
Alignment explanation
Indices: 32331376--32331909 Score: 713
Period size: 228 Copynumber: 2.4 Consensus size: 226
32331366 ACTATTGTTT
* * * * * *
32331376 ATTATTAGACTTGTTGAAATATGCTCTAAGTCCTTAAACTTTTC-GTAAATTTGAAAGTTAGCTC
1 ATTATTATACTAGTTGAAATATGCTCTAAGTCCCTATACTTTTCAG-ACATTTGAAAGTTAGCCC
32331440 T-TCTACTATATTATATAATGTTATATCATATCATATATAATATATTAATAGTTCATATATGCAT
65 TCT-TACTATATTATATAATGTTATATCATATCA-ATATAATATATTAATAGTTCATATATGCAT
* *
32331504 TAATGATTTAACATTATAATATCATGTAATACTATATAATTTATTATCATCTATAAAATAATAAT
128 TAATGATTAAACATTATAATATCATGTAACACTATATAATTTATTATCATCTATAAAATAATAAT
*
32331569 AGCAGTACATTATATATATTACATATGATTATAT
193 AGCAGTACATTATATATATTACATATGATTATAG
* ** * * *
32331603 ATTATT-TACTAGTTGAAATATGCTCTAGGTATCTATACTTTTTATACATTTGAAAATTAGCCCT
1 ATTATTATACTAGTTGAAATATGCTCTAAGTCCCTATACTTTTCAGACATTTGAAAGTTAGCCCT
* * *
32331667 CTTACTATATTATATAATGTTATATCGTATC-ATATAATATATTAATAATTTATATCTATATGCA
66 CTTACTATATTATATAATGTTATATCATATCAATATAATATATTAAT-AGTT-CA--TATATGCA
**
32331731 TTAATGATTAAACATTATATATATCATGTAACACTATATCTTTTATTATCATCTATAAAATAATA
127 TTAATGATTAAACATTATA-ATATCATGTAACACTATATAATTTATTATCATCTATAAAATAATA
*
32331796 ATAGCAGTACA-T-TATATATTACATATTATTATAG
191 ATAGCAGTACATTATATATATTACATATGATTATAG
* * *
32331830 ATTATTATACTAGTTGAAATATGCTCTAAATCCCTATACTTTCCAGACATTTGAAAGTTAGACCT
1 ATTATTATACTAGTTGAAATATGCTCTAAGTCCCTATACTTTTCAGACATTTGAAAGTTAGCCCT
* *
32331895 CCTA-TATAATATATA
66 CTTACTATATTATATA
32331910 TAGTAGTACA
Statistics
Matches: 267, Mismatches: 32, Indels: 16
0.85 0.10 0.05
Matches are distributed among these distances:
224 15 0.06
225 3 0.01
226 74 0.28
227 43 0.16
228 79 0.30
229 53 0.20
ACGTcount: A:0.38, C:0.12, G:0.07, T:0.43
Consensus pattern (226 bp):
ATTATTATACTAGTTGAAATATGCTCTAAGTCCCTATACTTTTCAGACATTTGAAAGTTAGCCCT
CTTACTATATTATATAATGTTATATCATATCAATATAATATATTAATAGTTCATATATGCATTAA
TGATTAAACATTATAATATCATGTAACACTATATAATTTATTATCATCTATAAAATAATAATAGC
AGTACATTATATATATTACATATGATTATAG
Done.