Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 97 of 343
Found at i:32331918 original size:113 final size:118
Alignment explanation
Indices: 32331783--32332028 Score: 299
Period size: 120 Copynumber: 2.1 Consensus size: 118
32331773 TTATTATCAT
* *
32331783 CTATAAAATA-ATAATAGCAGTACATTATATATTAC-A-TAT-TATTATAG-ATTATTATACTAG
1 CTATATAATATATAATAGCAGTACATTATATATCACTATTATATATTATAGTATTATTATACTAG
32331843 TTGAAATATGCTCTAAATCCCTATACTTTCCAG-ACATTTGAAAGTTAGACCTC
66 TTGAAATATGCTCTAAATCCCTATACTTTCC-GTACATTTGAAAGTTAGACCTC
* * *
32331896 CTATATAATATAT-ATAGTAGTACATTATATATCACTTATTATATATTATTGTTTATTGTTATAC
1 CTATATAATATATAATAGCAGTACATTATATATCAC-TATTATATATTATAG--TATTATTATAC
* * * * *
32331960 TAGTTGAAATTTGCTCTAAGTCTCTATACTTTTCGTACATTTGAAAGTTAGCCCTC
63 TAGTTGAAATATGCTCTAAATCCCTATACTTTCCGTACATTTGAAAGTTAGACCTC
*
32332016 CTATTATATTATA
1 CTA-TATAATATA
32332029 CAATGCTATA
Statistics
Matches: 112, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
113 29 0.26
114 2 0.02
115 1 0.01
116 3 0.03
117 7 0.06
119 1 0.01
120 61 0.54
121 8 0.07
ACGTcount: A:0.35, C:0.14, G:0.09, T:0.42
Consensus pattern (118 bp):
CTATATAATATATAATAGCAGTACATTATATATCACTATTATATATTATAGTATTATTATACTAG
TTGAAATATGCTCTAAATCCCTATACTTTCCGTACATTTGAAAGTTAGACCTC
Found at i:32341146 original size:6 final size:6
Alignment explanation
Indices: 32341135--32341171 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
32341125 CGTGCCCAGT
* *
32341135 AAAATA AAAATA AAAATA GAAATA AAATTA AAAATA A
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA A
32341172 TTAATAATAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.19
Consensus pattern (6 bp):
AAAATA
Found at i:32344199 original size:43 final size:41
Alignment explanation
Indices: 32344098--32344208 Score: 134
Period size: 42 Copynumber: 2.7 Consensus size: 41
32344088 TGATATTTTG
* *
32344098 TGTAAGACCATGTTTGGGATATGGCATCGATATGAGAATCA
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGAATCA
* * * *
32344139 TGTAAGACTATAGCTGGGCTATTGGCATCGATATTAG-ATCCCA
1 TGTAAGACCATATCTGGGATA-TGGCATCGATATGAGAAT--CA
32344182 TGTAAGACCATATCTGGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
32344209 TGGTATGATT
Statistics
Matches: 58, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
41 18 0.31
42 20 0.34
43 20 0.34
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (41 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGAATCA
Found at i:32348791 original size:15 final size:16
Alignment explanation
Indices: 32348762--32348791 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32348752 CAAACATGCT
32348762 TTAACACATTATCAAA
1 TTAACACATTATCAAA
32348778 TTAACACA-TATCAA
1 TTAACACATTATCAA
32348792 CAAGGCACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAACACATTATCAAA
Found at i:32355440 original size:40 final size:40
Alignment explanation
Indices: 32355360--32355508 Score: 212
Period size: 40 Copynumber: 3.8 Consensus size: 40
32355350 GGATATAGCT
* * *
32355360 ACTCGCTCGAATGCCTTCGGG-CATAGCCCGG-TTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
32355399 ACTCGCACCAATGCCTTCGGGACTTAGCCCGGATTTGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
32355439 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
32355479 GCTCGCACAAATGCCTTCAGGACTTAGCCC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC
32355509 AGTTATCATC
Statistics
Matches: 100, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
39 19 0.19
40 79 0.79
41 2 0.02
ACGTcount: A:0.22, C:0.30, G:0.23, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:32376352 original size:46 final size:47
Alignment explanation
Indices: 32376294--32376446 Score: 153
Period size: 46 Copynumber: 3.4 Consensus size: 47
32376284 GGGTTAATGT
*
32376294 GAGCTAGTGTAAGA-CATGTCTGAGACATACATCGACCACATTATGA
1 GAGCCAGTGTAAGAGCATGTCTGAGACATACATCGACCACATTATGA
* *** * *
32376340 GAGCCAGTGTAAGAGCATGTCTGGGACACGGTATTG--GA-A-T-T--
1 GAGCCAGTGTAAGAGCATGTCTGAGACA-TACATCGACCACATTATGA
* *
32376381 GAGCTAGTGTAAGA-CATGTCTGAGACATACATCAACCACATTATGA
1 GAGCCAGTGTAAGAGCATGTCTGAGACATACATCGACCACATTATGA
32376427 GAGCCAGTGTAAGAGCATGT
1 GAGCCAGTGTAAGAGCATGT
32376447 TTGGGACACG
Statistics
Matches: 81, Mismatches: 16, Indels: 19
0.70 0.14 0.16
Matches are distributed among these distances:
39 2 0.02
40 12 0.15
41 14 0.17
42 1 0.01
43 2 0.02
44 2 0.02
45 1 0.01
46 27 0.33
47 17 0.21
48 3 0.04
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.24
Consensus pattern (47 bp):
GAGCCAGTGTAAGAGCATGTCTGAGACATACATCGACCACATTATGA
Found at i:32376500 original size:46 final size:46
Alignment explanation
Indices: 32376432--32376695 Score: 161
Period size: 46 Copynumber: 5.7 Consensus size: 46
32376422 TATGAGAGCC
* * * *
32376432 AGTGTAAGAGCATGTTTGGGACACGGTATCGGCATTGAGCTAGTGCT
1 AGTGTAAGACCATGTCTGGGACA-GGCATCGACATTGAGCTAGTGCT
* *
32376479 AGTGTAAGA-CATGTCTGGGACATGCATCGACCTTGAGACGTAAGT-C-
1 AGTGTAAGACCATGTCTGGGACAGGCATCGACATTGAG-C-T-AGTGCT
* * *
32376525 AGTGTAAGA-CATGTCTGGGACATGCATCGACCTCGAGACGTAAGT-C-
1 AGTGTAAGACCATGTCTGGGACAGGCATCGACATTGAG-C-T-AGTGCT
* * * * * *
32376571 AGTGTAAGA-AATGTCTGGGACATGTATCGGC-TATGAGATA-TGTT
1 AGTGTAAGACCATGTCTGGGACAGGCATCGACAT-TGAGCTAGTGCT
* ** *
32376615 AGTGTAAGACCATGTCTGGTACACGGCATCGACACAGATATGCTAGAGCCT
1 AGTGTAAGACCATGTCTGGGACA-GGCATCGACATTG--A-GCTAGTG-CT
32376666 -GTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACA-GGCATCG
32376696 GCACCTTACC
Statistics
Matches: 179, Mismatches: 24, Indels: 25
0.79 0.11 0.11
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 10 0.06
45 23 0.13
46 96 0.54
47 11 0.06
48 4 0.02
49 3 0.02
50 29 0.16
51 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACAGGCATCGACATTGAGCTAGTGCT
Found at i:32376533 original size:93 final size:87
Alignment explanation
Indices: 32376293--32376476 Score: 332
Period size: 87 Copynumber: 2.1 Consensus size: 87
32376283 TGGGTTAATG
32376293 TGAGCTAGTGTAAGACATGTCTGAGACATACATCGACCACATTATGAGAGCCAGTGTAAGAGCAT
1 TGAGCTAGTGTAAGACATGTCTGAGACATACATCGACCACATTATGAGAGCCAGTGTAAGAGCAT
*
32376358 GTCTGGGACACGGTATTGGAAT
66 GTCTGGGACACGGTATCGGAAT
*
32376380 TGAGCTAGTGTAAGACATGTCTGAGACATACATCAACCACATTATGAGAGCCAGTGTAAGAGCAT
1 TGAGCTAGTGTAAGACATGTCTGAGACATACATCGACCACATTATGAGAGCCAGTGTAAGAGCAT
* *
32376445 GTTTGGGACACGGTATCGGCAT
66 GTCTGGGACACGGTATCGGAAT
32376467 TGAGCTAGTG
1 TGAGCTAGTG
32376477 CTAGTGTAAG
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
87 93 1.00
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.24
Consensus pattern (87 bp):
TGAGCTAGTGTAAGACATGTCTGAGACATACATCGACCACATTATGAGAGCCAGTGTAAGAGCAT
GTCTGGGACACGGTATCGGAAT
Found at i:32376588 original size:92 final size:92
Alignment explanation
Indices: 32376431--32376647 Score: 230
Period size: 92 Copynumber: 2.4 Consensus size: 92
32376421 TTATGAGAGC
* * * * * * *
32376431 CAGTGTAAGAGCATGTTTGGGACACGGTATCGGCATTGAG-C-T-AGTGCTAGTGTAAGACATGT
1 CAGTGTAAGACCATGTCTGGGACACGGCATCGACCTCGAGACGTAAGT-C-AGTGTAAGAAATGT
32376493 CTGGGACATGCATCGACCT-TGAGACGTAAGT
64 CTGGGACATGCATCG-CCTATGAGA--TAAGT
*
32376524 CAGTGTAAGA-CATGTCTGGGACA-TGCATCGACCTCGAGACGTAAGTCAGTGTAAGAAATGTCT
1 CAGTGTAAGACCATGTCTGGGACACGGCATCGACCTCGAGACGTAAGTCAGTGTAAGAAATGTCT
* * *
32376587 GGGACATGTATCGGCTATGAGATATGT
66 GGGACATGCATCGCCTATGAGATAAGT
* *
32376614 TAGTGTAAGACCATGTCTGGTACACGGCATCGAC
1 CAGTGTAAGACCATGTCTGGGACACGGCATCGAC
32376648 ACAGATATGC
Statistics
Matches: 105, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
90 13 0.12
91 24 0.23
92 53 0.50
93 12 0.11
94 3 0.03
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (92 bp):
CAGTGTAAGACCATGTCTGGGACACGGCATCGACCTCGAGACGTAAGTCAGTGTAAGAAATGTCT
GGGACATGCATCGCCTATGAGATAAGT
Found at i:32382594 original size:46 final size:45
Alignment explanation
Indices: 32382542--32382632 Score: 130
Period size: 46 Copynumber: 2.0 Consensus size: 45
32382532 GGAATTGGCA
*
32382542 TTGAGAC-AAGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCC
1 TTGAGACGAAGT-C-AGTGTAAGACATGTCTGGGACATACATCGGCC
*
32382588 TTGAGACGTAAGTCAGTGTAAGGCATGTCTGGGACATACATCGGC
1 TTGAGACG-AAGTCAGTGTAAGACATGTCTGGGACATACATCGGC
32382633 TACAAGATGT
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
46 36 0.88
47 1 0.02
48 4 0.10
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (45 bp):
TTGAGACGAAGTCAGTGTAAGACATGTCTGGGACATACATCGGCC
Found at i:32384378 original size:20 final size:20
Alignment explanation
Indices: 32384338--32384385 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
32384328 TAACAACAAC
**
32384338 AACGAAAATTTTTACTTGTA
1 AACGAAAATTTTTACAAGTA
32384358 AACGAAAATTTTTACAAGTA
1 AACGAAAATTTTTACAAGTA
*
32384378 AATGAAAA
1 AACGAAAA
32384386 GAAGACATGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.50, C:0.08, G:0.10, T:0.31
Consensus pattern (20 bp):
AACGAAAATTTTTACAAGTA
Found at i:32408666 original size:44 final size:46
Alignment explanation
Indices: 32408564--32408702 Score: 132
Period size: 44 Copynumber: 3.1 Consensus size: 46
32408554 TTATGAGAGC
* * *
32408564 CAGTGTAAGATCATGTCTGGGACATGGCATCGGCATTGAGACGAGA-A-GT
1 CAGTGTAAGACCATGCCTGGGACATAGCATCGGC--T---ACGAGATATGT
32408613 -AGTGTAAGA-CATGCCTGGGACAT-GCATCGGCTACGAGATATGT
1 CAGTGTAAGACCATGCCTGGGACATAGCATCGGCTACGAGATATGT
*
32408656 CAGTGTAAGACCAT-CTCTGGGACATAGCATCAGC-ACG-GATATGT
1 CAGTGTAAGACCATGC-CTGGGACATAGCATCGGCTACGAGATATGT
32408700 CAG
1 CAG
32408703 AGCTAGTGTA
Statistics
Matches: 82, Mismatches: 2, Indels: 17
0.81 0.02 0.17
Matches are distributed among these distances:
41 6 0.07
42 1 0.01
43 2 0.02
44 21 0.26
45 15 0.18
46 15 0.18
47 13 0.16
48 9 0.11
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.22
Consensus pattern (46 bp):
CAGTGTAAGACCATGCCTGGGACATAGCATCGGCTACGAGATATGT
Found at i:32415412 original size:46 final size:45
Alignment explanation
Indices: 32415362--32415537 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 45
32415352 TGTTTGGGCA
32415362 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
32415408 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
32415455 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*
32415501 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
32415538 GCGGTTTACA
Statistics
Matches: 111, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 3 0.03
46 67 0.60
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:32415517 original size:93 final size:93
Alignment explanation
Indices: 32415358--32415529 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
32415348 AGGATGTTTG
*
32415358 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
32415423 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
32415451 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGA
32415515 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
32415530 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:32418532 original size:29 final size:29
Alignment explanation
Indices: 32418446--32418529 Score: 100
Period size: 29 Copynumber: 2.9 Consensus size: 29
32418436 GATAGTATCG
* * * *
32418446 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGG-TTTCTC
32418476 TAT-TCTGGATTTCTTTATTCTGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGTTTCTC
32418505 TATCTTGGATTTCTTTATTC-GGTTT
1 TATCTTGGATTTCTTTATTCTGGTTT
32418530 TCTTGTTATC
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
28 5 0.10
29 23 0.48
30 20 0.42
ACGTcount: A:0.11, C:0.17, G:0.15, T:0.57
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCTGGTTTCTC
Found at i:32418533 original size:14 final size:15
Alignment explanation
Indices: 32418455--32418533 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
32418445 GTATCTTGGG
*
32418455 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
32418470 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
32418485 TTTCTTTATTCTGG-
1 TTTCTTTATTCTGGA
*
32418499 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
32418514 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
32418528 TTTCTT
1 TTTCTT
32418534 GTTATCTTTG
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
13 2 0.04
14 18 0.33
15 33 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.13, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:32442210 original size:29 final size:29
Alignment explanation
Indices: 32442137--32442212 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 29
32442127 GAGTTATATC
*
32442137 GATTTGGCTTTGGGCCATGCATATCGGAT
1 GATTTGGCTTTGGGCCATGCATATAGGAT
* * *
32442166 GATATGGCTTCGGGCCATGTATATAGGAT
1 GATTTGGCTTTGGGCCATGCATATAGGAT
* *
32442195 GATTTAGCTTTAGGCCAT
1 GATTTGGCTTTGGGCCAT
32442213 AATAATAGTT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.21, C:0.16, G:0.29, T:0.34
Consensus pattern (29 bp):
GATTTGGCTTTGGGCCATGCATATAGGAT
Found at i:32445645 original size:58 final size:58
Alignment explanation
Indices: 32445572--32445695 Score: 241
Period size: 58 Copynumber: 2.2 Consensus size: 58
32445562 GGCTTATATA
32445572 CAACAACATCTCAAAATATCATTCACTTACGTCTATTCTATACATGCCATACGAATTC
1 CAACAACATCTCAAAATATCATTCACTTACGTCTATTCTATACATGCCATACGAATTC
32445630 CAACAACATCTCAAAATATCATTCACTTACGTCTATTCTATACATGCCATACGAATTC
1 CAACAACATCTCAAAATATCATTCACTTACGTCTATTCTATACATGCCATACGAATTC
32445688 CAA-AACAT
1 CAACAACAT
32445696 AATAGCACCA
Statistics
Matches: 66, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
57 5 0.08
58 61 0.92
ACGTcount: A:0.38, C:0.27, G:0.05, T:0.30
Consensus pattern (58 bp):
CAACAACATCTCAAAATATCATTCACTTACGTCTATTCTATACATGCCATACGAATTC
Found at i:32454986 original size:40 final size:40
Alignment explanation
Indices: 32454896--32455080 Score: 171
Period size: 40 Copynumber: 4.7 Consensus size: 40
32454886 GCTACTCGTT
* * *
32454896 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATACCTTCGGGACTTAGCCCGGATT-TAGTAACTCACA
* * *
32454936 CAAATGCCTTCGGGACTTAACCCGGATTTAGTGACTCACA
1 CAAATACCTTCGGGACTTAGCCCGGATTTAGTAACTCACA
* * **
32454976 CCAATACCTTCGGG-CTTAGCCCGGAATTAGTAACTTGCA
1 CAAATACCTTCGGGACTTAGCCCGGATTTAGTAACTCACA
* * * * *
32455015 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATACCTTCGGGA-CTTAGCCCGGATTTAGTAACTCA-CA
*
32455056 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATACCTTCGGGACTTAGCCCGGA
32455081 CATCATTCGA
Statistics
Matches: 121, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
38 2 0.02
39 29 0.24
40 79 0.65
41 11 0.09
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATACCTTCGGGACTTAGCCCGGATTTAGTAACTCACA
Found at i:32454996 original size:79 final size:80
Alignment explanation
Indices: 32454863--32455080 Score: 220
Period size: 79 Copynumber: 2.8 Consensus size: 80
32454853 GAATCACGTA
** * *
32454863 CCTTCGGAAT-TTAA-CCGGATATAG-CTACTC-GTTCAAATGCCTTCGGGACATAGCCCGG-TT
1 CCTTCGG-ATCTTAACCCGGATATAGTC-ACTCAGCACAAA-GCCTTCGGGACTTAGCCCGGAAT
32454923 ATAGTAACTCGCACAAATG
63 -TAGTAACTCGCACAAATG
* *
32454942 CCTTCGGGA-CTTAACCCGGATTTAGTGACTCA-CACCAATA-CCTTCGGG-CTTAGCCCGGAAT
1 CCTTC-GGATCTTAACCCGGATATAGTCACTCAGCA-CAA-AGCCTTCGGGACTTAGCCCGGAAT
*
32455003 TAGTAACTTGCACAAATG
63 TAGTAACTCGCACAAATG
** *
32455021 CCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGATCTTAACCCGGATATAGTCACTCAGCACAAAGCCTTCGGGACTTAGCCCGGA
32455081 CATCATTCGA
Statistics
Matches: 115, Mismatches: 12, Indels: 23
0.77 0.08 0.15
Matches are distributed among these distances:
78 4 0.03
79 70 0.61
80 37 0.32
81 3 0.03
82 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (80 bp):
CCTTCGGATCTTAACCCGGATATAGTCACTCAGCACAAAGCCTTCGGGACTTAGCCCGGAATTAG
TAACTCGCACAAATG
Found at i:32463159 original size:79 final size:81
Alignment explanation
Indices: 32463050--32463232 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
32463040 TACTCGTTCA
* *
32463050 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCACACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAATGCCTTC-GGATCTTAACCCGG
* * *
32463113 ATTTAGTGAC-TCGCACC
65 ATATAGTCACTTAGCA-C
* **
32463130 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAATGCCTTCGGATCTTAACCCGGA
32463193 TATAGTCACTTAGCAC
66 TATAGTCACTTAGCAC
*
32463209 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
32463233 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAATGCCTTCGGATCTTAACCCGGA
TATAGTCACTTAGCAC
Found at i:32463232 original size:40 final size:40
Alignment explanation
Indices: 32463048--32463232 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
32463038 GCTACTCGTT
* *
32463048 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCA-CA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACT-AGCA
* * * *
32463088 CAAATGCCTTCGGGACTTAACCCGGATTTAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* *
32463128 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCA
* *
32463167 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TAGCA
32463208 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
32463233 CATCATTCGA
Statistics
Matches: 123, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 78 0.63
41 12 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
Found at i:32473880 original size:42 final size:42
Alignment explanation
Indices: 32473821--32473980 Score: 216
Period size: 42 Copynumber: 3.8 Consensus size: 42
32473811 TTAGGGTTAC
* *
32473821 TGAGACTACGTGTAAGACCATATATGGGATATGGCATCAATA
1 TGAGACTTCGTGTAAGACCATATATGGGATATGGCATCGATA
*
32473863 TGAGACTTCGTGTAAGACCATATATGGGATATGGCATTGATA
1 TGAGACTTCGTGTAAGACCATATATGGGATATGGCATCGATA
*
32473905 TGAGACTTCGTGTAAGACCATAGT-TGGGTTATTGGCATCGATA
1 TGAGACTTCGTGTAAGACCATA-TATGGGATA-TGGCATCGATA
* * *
32473948 CGAGA-TTACATGTAAGACCATATCTGGGATATG
1 TGAGACTT-CGTGTAAGACCATATATGGGATATG
32473981 ACATTGGTAC
Statistics
Matches: 106, Mismatches: 8, Indels: 8
0.87 0.07 0.07
Matches are distributed among these distances:
42 72 0.68
43 34 0.32
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (42 bp):
TGAGACTTCGTGTAAGACCATATATGGGATATGGCATCGATA
Found at i:32473976 original size:85 final size:84
Alignment explanation
Indices: 32473821--32473986 Score: 228
Period size: 85 Copynumber: 2.0 Consensus size: 84
32473811 TTAGGGTTAC
* *
32473821 TGAGACTACGTGTAAGACCATATATGGGATATGGCATCAATATGAGACTTCGTGTAAGACCATAT
1 TGAGACTACGTGTAAGACCATATATGGGATATGGCATCAATACGAGACTTCATGTAAGACCATAT
*
32473886 ATGGGATATGGCATTGATA
66 ATGGGATATGACATTGATA
* * *
32473905 TGAGACTTCGTGTAAGACCATAGT-TGGGTTATTGGCATCGATACGAGA-TTACATGTAAGACCA
1 TGAGACTACGTGTAAGACCATA-TATGGGATA-TGGCATCAATACGAGACTT-CATGTAAGACCA
*
32473968 TATCTGGGATATGACATTG
63 TATATGGGATATGACATTG
32473987 GTACGGTACC
Statistics
Matches: 72, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
84 29 0.40
85 43 0.60
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.30
Consensus pattern (84 bp):
TGAGACTACGTGTAAGACCATATATGGGATATGGCATCAATACGAGACTTCATGTAAGACCATAT
ATGGGATATGACATTGATA
Found at i:32480389 original size:30 final size:30
Alignment explanation
Indices: 32480355--32480415 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
32480345 TTCCCGAACC
32480355 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
32480385 TAGGGGCAAAATTGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
32480415 T
1 T
32480416 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:32481001 original size:68 final size:64
Alignment explanation
Indices: 32480879--32481029 Score: 160
Period size: 68 Copynumber: 2.3 Consensus size: 64
32480869 ATACAGATGG
* * * * *
32480879 TATGTAGCTAGGTCACATGTATGGTGCTAAGTGCACATCATGTGTACAACAGAGCTACGAGACAT
1 TATGTAGCTAGGTCGCATGGATGATACTAAGTGCACACCATGTGTACAACAGAGCTACG-G-CA-
32480944 TA
63 TA
* * * * *
32480946 TGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGCTACGGGAT
1 T-ATGTAGCTAGGTCGCATGGATGATACTAAGTGCACACCATGT-GTACAACAGAGCTACGGCAT
32481010 A
64 A
32481011 TATGTAGCTAGGTCGCATG
1 TATGTAGCTAGGTCGCATG
32481030 CGTGGTTCCA
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
64 18 0.25
65 3 0.04
66 1 0.01
67 2 0.03
68 47 0.65
69 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (64 bp):
TATGTAGCTAGGTCGCATGGATGATACTAAGTGCACACCATGTGTACAACAGAGCTACGGCATA
Found at i:32481028 original size:64 final size:64
Alignment explanation
Indices: 32480948--32481130 Score: 174
Period size: 67 Copynumber: 2.8 Consensus size: 64
32480938 AGACATTATG
* ** *
32480948 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACAAGATAA
* * * * * *
32481012 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCACGTAGACAAGAGAGCTACAAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACAAGAT
32481077 AA
63 AA
** * *
32481079 ACTG--GCTAGGTCATATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAG
1 A-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAG
32481131 TCAAAATTAT
Statistics
Matches: 94, Mismatches: 20, Indels: 11
0.75 0.16 0.09
Matches are distributed among these distances:
62 1 0.01
63 17 0.18
64 25 0.27
66 20 0.21
67 29 0.31
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACAAGATAA
Found at i:32487875 original size:19 final size:17
Alignment explanation
Indices: 32487825--32487869 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 17
32487815 AGTTGGGCCA
*
32487825 TGTGGG-CCTCACAGGCT
1 TGTGGGCCCT-ACGGGCT
32487842 TGTGGGCCCTACGGGCT
1 TGTGGGCCCTACGGGCT
32487859 TGTGGGCCCTA
1 TGTGGGCCCTA
32487870 TACGGGTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
17 23 0.88
18 3 0.12
ACGTcount: A:0.09, C:0.29, G:0.38, T:0.24
Consensus pattern (17 bp):
TGTGGGCCCTACGGGCT
Found at i:32501891 original size:40 final size:40
Alignment explanation
Indices: 32501786--32502110 Score: 455
Period size: 40 Copynumber: 8.2 Consensus size: 40
32501776 GGATTGATAA
* *
32501786 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
32501826 TCGGGCTAAG-CTCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
32501865 CTGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTAGAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
32501905 CCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
32501945 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
32501985 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
32502025 CCGGGCTAAGTCCCG--TGCCTTCGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
32502063 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
32502103 CC-GGCTAA
1 CCGGGCTAA
32502111 ACTCCGAAGG
Statistics
Matches: 258, Mismatches: 22, Indels: 11
0.89 0.08 0.04
Matches are distributed among these distances:
38 35 0.14
39 40 0.16
40 183 0.71
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:32505512 original size:39 final size:40
Alignment explanation
Indices: 32505357--32505542 Score: 254
Period size: 40 Copynumber: 4.7 Consensus size: 40
32505347 GCTACTCGTT
* *
32505357 CAAATGCCTTTGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
32505397 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
32505437 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
32505477 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGAAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
32505516 CAAATGCCTTC-GGATCTTAGTCCGGAT
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT
32505543 ATGGTCACTT
Statistics
Matches: 133, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
38 2 0.02
39 32 0.24
40 97 0.73
41 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:32513292 original size:40 final size:40
Alignment explanation
Indices: 32513189--32513348 Score: 236
Period size: 40 Copynumber: 4.0 Consensus size: 40
32513179 ATTGATAACT
* * *
32513189 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
32513229 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
32513268 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* *
32513308 GGGCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
32513348 G
1 G
32513349 ACTAAACTCC
Statistics
Matches: 112, Mismatches: 5, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
39 36 0.32
40 76 0.68
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:32513361 original size:79 final size:79
Alignment explanation
Indices: 32513192--32513363 Score: 208
Period size: 79 Copynumber: 2.2 Consensus size: 79
32513182 GATAACTGGG
* * * *
32513192 CTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTTCGGGCTAAGCCCGAAGGCATTTGTGCGAG
1 CTAACTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGCCCGAAGGCATTTGAGCGAG
*
32513257 TTACTATATCCGGG
66 TTACTATATCCGGA
* * *
32513271 CTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCCGGGCTAAGTCCCGAAGGCATTTGAGCT
1 CTAACTCCCGAAGGCATTTGTGCGAGTGACTAAT-TCCGGGCTAAG-CCCGAAGGCATTTGAGCG
32513335 AG-TAGCTATATCC-GA
64 AGTTA-CTATATCCGGA
32513350 CTAAACT-CCGAAGG
1 CT-AACTCCCGAAGG
32513364 TACTTGGTTT
Statistics
Matches: 82, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
78 2 0.02
79 51 0.62
80 29 0.35
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (79 bp):
CTAACTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGCCCGAAGGCATTTGAGCGAG
TTACTATATCCGGA
Found at i:32525299 original size:79 final size:81
Alignment explanation
Indices: 32525130--32525314 Score: 211
Period size: 79 Copynumber: 2.3 Consensus size: 81
32525120 GCTACTCGTT
* * *
32525130 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCA
1 CAAA-GCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCA
* *
32525194 GATTTAGTGACTCACAC
65 GATATAGTCACTCACAC
**
32525211 CAATA-CCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-AGATCTTAGTCC
1 CAA-AGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGAGA-CTTAACCC
* *
32525272 GGATATAGTCACTTAGCA-
64 AGATATAGTCACTCA-CAC
32525290 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
32525315 CATCATTCGA
Statistics
Matches: 89, Mismatches: 9, Indels: 13
0.80 0.08 0.12
Matches are distributed among these distances:
78 3 0.03
79 60 0.67
80 22 0.25
81 3 0.03
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (81 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCAG
ATATAGTCACTCACAC
Found at i:32525314 original size:40 final size:40
Alignment explanation
Indices: 32525130--32525314 Score: 182
Period size: 40 Copynumber: 4.7 Consensus size: 40
32525120 GCTACTCGTT
* * *
32525130 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* * * *
32525170 CAAATGCCTTCGGGACTTAACCCAGATTTAGTGACTCA-CA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACT-AGCA
* * *
32525210 CCAATACCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCA
* * *
32525249 CAAATGCCTTC-AGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TAGCA
32525290 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
32525315 CATCATTCGA
Statistics
Matches: 115, Mismatches: 22, Indels: 16
0.75 0.14 0.10
Matches are distributed among these distances:
38 1 0.01
39 27 0.23
40 76 0.66
41 11 0.10
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
Found at i:32532173 original size:47 final size:47
Alignment explanation
Indices: 32532119--32532523 Score: 675
Period size: 47 Copynumber: 8.6 Consensus size: 47
32532109 TATTTGAATA
32532119 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
32532166 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
32532213 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
32532262 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
32532309 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
32532356 AATGTGAAAGTGTATATATGTGATAAAGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
32532403 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
32532450 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
32532497 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
32532524 TCCCGAAGGG
Statistics
Matches: 340, Mismatches: 16, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
47 295 0.87
49 45 0.13
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:32545041 original size:48 final size:48
Alignment explanation
Indices: 32544955--32545068 Score: 124
Period size: 48 Copynumber: 2.4 Consensus size: 48
32544945 CATGTCCTGA
*
32544955 ACATGGTCTTACATAGGATCACATAACAATGCGAAAGCCATGTCCCAG
1 ACATGGTCTTACATAGGATCACATAACAATGCGAAAGCCATATCCCAG
** * *
32545003 ACATGGTCTTACAT-GGTATCACATGTCACTGCCG-AAGCCATATCCTAG
1 ACATGGTCTTACATAGG-ATCACATAACAATG-CGAAAGCCATATCCCAG
* * *
32545051 ATATGGTATTATATAGGA
1 ACATGGTCTTACATAGGA
32545069 GCTCATCCAC
Statistics
Matches: 55, Mismatches: 8, Indels: 6
0.80 0.12 0.09
Matches are distributed among these distances:
47 2 0.04
48 49 0.89
49 4 0.07
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.26
Consensus pattern (48 bp):
ACATGGTCTTACATAGGATCACATAACAATGCGAAAGCCATATCCCAG
Found at i:32552321 original size:20 final size:21
Alignment explanation
Indices: 32552296--32552336 Score: 75
Period size: 20 Copynumber: 2.0 Consensus size: 21
32552286 AGATCTTTTG
32552296 GGTATAGTTAGTC-CTTTATT
1 GGTATAGTTAGTCTCTTTATT
32552316 GGTATAGTTAGTCTCTTTATT
1 GGTATAGTTAGTCTCTTTATT
32552337 TTTAGTATGG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.20, C:0.10, G:0.20, T:0.51
Consensus pattern (21 bp):
GGTATAGTTAGTCTCTTTATT
Found at i:32555057 original size:33 final size:33
Alignment explanation
Indices: 32555015--32555083 Score: 138
Period size: 33 Copynumber: 2.1 Consensus size: 33
32555005 TGACAAAGTA
32555015 TGTAGGAATTGCCCTTTGATGATTAGAGGACAC
1 TGTAGGAATTGCCCTTTGATGATTAGAGGACAC
32555048 TGTAGGAATTGCCCTTTGATGATTAGAGGACAC
1 TGTAGGAATTGCCCTTTGATGATTAGAGGACAC
32555081 TGT
1 TGT
32555084 TTTTCGACTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.32
Consensus pattern (33 bp):
TGTAGGAATTGCCCTTTGATGATTAGAGGACAC
Found at i:32559079 original size:22 final size:22
Alignment explanation
Indices: 32559039--32559080 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
32559029 TTATGAATTA
*
32559039 TATGTTTGGTATGACTTTGGCT
1 TATGTTTGGCATGACTTTGGCT
32559061 TATGATTTGGCATGA-TTTGG
1 TATG-TTTGGCATGACTTTGG
32559081 TATGGATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.17, C:0.07, G:0.29, T:0.48
Consensus pattern (22 bp):
TATGTTTGGCATGACTTTGGCT
Found at i:32569425 original size:50 final size:50
Alignment explanation
Indices: 32569371--32569471 Score: 202
Period size: 50 Copynumber: 2.0 Consensus size: 50
32569361 TATACAAAAA
32569371 TTACATTTTTGCCCCCTAACTTTTACAAAATTACGATTTTTCCCCAAGGC
1 TTACATTTTTGCCCCCTAACTTTTACAAAATTACGATTTTTCCCCAAGGC
32569421 TTACATTTTTGCCCCCTAACTTTTACAAAATTACGATTTTTCCCCAAGGC
1 TTACATTTTTGCCCCCTAACTTTTACAAAATTACGATTTTTCCCCAAGGC
32569471 T
1 T
32569472 CGGAAATTTA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.39
Consensus pattern (50 bp):
TTACATTTTTGCCCCCTAACTTTTACAAAATTACGATTTTTCCCCAAGGC
Found at i:32574641 original size:39 final size:40
Alignment explanation
Indices: 32574527--32574707 Score: 217
Period size: 40 Copynumber: 4.5 Consensus size: 40
32574517 GCTACTCGTT
*
32574527 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
32574567 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
32574607 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
32574646 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
32574687 CAAA-GCCTTTGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
32574708 TGGACATCAT
Statistics
Matches: 122, Mismatches: 14, Indels: 10
0.84 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.27
40 74 0.61
41 13 0.11
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:32574695 original size:79 final size:80
Alignment explanation
Indices: 32574527--32574707 Score: 208
Period size: 79 Copynumber: 2.3 Consensus size: 80
32574517 GCTACTCGTT
* *
32574527 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAA-GCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
32574592 ATTTAGTAACTCGCAC
65 ATATAGTAACTAGCAC
* **
32574608 CAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAAGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
* *
32574670 GATATGGTCACTTAGCA-
64 GATATAGTAAC-TAGCAC
*
32574687 CAAAGCCTTTGGGACTTAGCC
1 CAAAGCCTTCGGGACTTAGCC
32574708 TGGACATCAT
Statistics
Matches: 85, Mismatches: 11, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
78 4 0.05
79 58 0.68
80 20 0.24
81 3 0.04
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTAGCAC
Found at i:32586477 original size:46 final size:46
Alignment explanation
Indices: 32586410--32586584 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
32586400 ATGTAACCGC
*
32586410 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
32586456 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* ***
32586506 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGAAATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* * *
32586549 CCATAAGTGAACTCAGACTCAACTCAACGTGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
32586585 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 60 0.56
47 28 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:32586529 original size:93 final size:93
Alignment explanation
Indices: 32586417--32586588 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
32586407 CGCCCATAAG
*** *
32586417 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGAAATTCGCATCCATAAGTGAACTCAGACTCAACTCA
32586482 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
32586510 CGAACTCGGACTCAACTCAACGAGTTCGGAAATTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGAAATTCGCATCCATAAGTGAACTCAGACTCAACTCA
*
32586575 ACGTGTTCGGATGC
66 ACGAGTTCGGATGC
32586589 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGAAATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:32586604 original size:46 final size:44
Alignment explanation
Indices: 32586418--32586604 Score: 130
Period size: 46 Copynumber: 4.0 Consensus size: 44
32586408 GCCCATAAGC
* * * * *
32586418 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAGTTC-GG-ATGC-CAACCATCTAGT
*
32586464 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT-AGT
* * *
32586511 GAACTCGGACTCAACTCAACGAGTTCGGAAATTCGCATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCTAGT
* *
32586557 GAACTCAGACTCAACTCAACGTGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CTAGT
32586603 GA
1 GA
32586605 CATGTCACTT
Statistics
Matches: 112, Mismatches: 16, Indels: 26
0.73 0.10 0.17
Matches are distributed among these distances:
43 1 0.01
44 12 0.11
45 3 0.03
46 59 0.53
47 31 0.28
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (44 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCTAGT
Found at i:32589178 original size:48 final size:48
Alignment explanation
Indices: 32589045--32589179 Score: 189
Period size: 48 Copynumber: 2.8 Consensus size: 48
32589035 GTGGATGAGC
* * * *
32589045 TCCCATATAAGACCATATCTGGGATATGGCTTTGGCAGTGACATGTGA
1 TCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCATTGACATGTGA
**
32589093 TCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCATTGTTATGTGA
1 TCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCATTGACATGTGA
* * *
32589141 TCCCATGTAAGACCATGCCCGGGACATGGCATTGGCATT
1 TCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCATT
32589180 AGAATGAGAC
Statistics
Matches: 78, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 78 1.00
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (48 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCATTGACATGTGA
Found at i:32589311 original size:48 final size:48
Alignment explanation
Indices: 32589045--32589320 Score: 167
Period size: 48 Copynumber: 5.8 Consensus size: 48
32589035 GTGGATGAGC
* * * ** ** *
32589045 TCCCATATAAGACCATATCTGGGATATGGCTTTGGCAGTGACATGTGA
1 TCCCATGTAAGACCATATCTGGGACATGGCATTGGCACCGTTATGTGG
* * ** *
32589093 TCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCATTGTTATGTGA
1 TCCCATGTAAGACCATATCTGGGACATGGCATTGGCACCGTTATGTGG
** *
32589141 TCCCATGTAAGACCATGCCCGGGACATGGCATTGGCA---TTA-GAATGAG
1 TCCCATGTAAGACCATATCTGGGACATGGCATTGGCACCGTTATG--TG-G
* * * * ** * *
32589188 ACATCGTGTAAGATCATAGT-TGGG-C-TAACA---GCTCCGGTATGTGAG
1 TC-CCATGTAAGACCATA-TCTGGGACATGGCATTGGCACCGTTATGTG-G
* * *
32589233 ATCCCAAGTAAGACCATGTCTAGGACATGGCATTGGCACCGTTATGTGG
1 -TCCCATGTAAGACCATATCTGGGACATGGCATTGGCACCGTTATGTGG
*
32589282 TCCCATGTAAGACCATATCTGGGATATGGCATTGGCACC
1 TCCCATGTAAGACCATATCTGGGACATGGCATTGGCACC
32589321 CTACCTTGTG
Statistics
Matches: 176, Mismatches: 36, Indels: 32
0.72 0.15 0.13
Matches are distributed among these distances:
43 2 0.01
44 2 0.01
45 20 0.11
46 9 0.05
47 6 0.03
48 125 0.71
49 1 0.01
50 11 0.06
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (48 bp):
TCCCATGTAAGACCATATCTGGGACATGGCATTGGCACCGTTATGTGG
Found at i:32593162 original size:47 final size:48
Alignment explanation
Indices: 32593088--32593313 Score: 182
Period size: 47 Copynumber: 4.8 Consensus size: 48
32593078 GTGGGTAAGG
* *
32593088 TGCCGATGCCATGTCCCGAACACGGTCTTACACTAGCTCATATCTC-A
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCATATCTCGA
* * *
32593135 TGTCGATGCCATGTCCCAAACATGGTCTTACACT-GATTATCATCTCG-
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCAT-ATCTCGA
* * * *
32593182 TAGCCGATG-CATGTCTCAGACAT-GTCTTACAC-AGGT-TTACGTCTCGA
1 T-GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCATA--TCTCGA
* * * **
32593229 GGCCGATG-CATGTCCCATACAT-GTCTTACACTAGCACCCATCTCGA
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCATATCTCGA
* * * * *
32593275 TGCTGATTCCATGTACCAAGCATGGTCTTACACTGGCTC
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTC
32593314 TCCTAATGTA
Statistics
Matches: 143, Mismatches: 25, Indels: 21
0.76 0.13 0.11
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 59 0.41
47 62 0.43
48 20 0.14
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (48 bp):
TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCATATCTCGA
Found at i:32593273 original size:46 final size:45
Alignment explanation
Indices: 32593089--32593308 Score: 137
Period size: 46 Copynumber: 4.7 Consensus size: 45
32593079 TGGGTAAGGT
* * *
32593089 GCCGATGCCATGTCCCGAACACGGTCTTACACTAGCTCATATCTC-A
1 GCCGATGCCATGTCCC-AACA-TGTCTTACACTAGCACACATCTCGA
* *
32593135 TGTCGATGCCATGTCCCAAACATGGTCTTACACT-G-ATTATCATCTCGTA
1 -GCCGATGCCATGTCCC-AACAT-GTCTTACACTAGCA-CA-CATCTCG-A
* *** *
32593184 GCCGATG-CATGTCTCAGACATGTCTTACAC-AGGTTTACGTCTCGA
1 GCCGATGCCATGTCCCA-ACATGTCTTACACTA-GCACACATCTCGA
*
32593229 GGCCGATG-CATGTCCCATACATGTCTTACACTAGCACCCATCTCGA
1 -GCCGATGCCATGTCCCA-ACATGTCTTACACTAGCACACATCTCGA
* * *
32593275 TGCTGATTCCATGTACCAAGCATGGTCTTACACT
1 -GCCGATGCCATGTCCCAA-CAT-GTCTTACACT
32593309 GGCTCTCCTA
Statistics
Matches: 138, Mismatches: 21, Indels: 27
0.74 0.11 0.15
Matches are distributed among these distances:
45 1 0.01
46 60 0.43
47 60 0.43
48 16 0.12
49 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (45 bp):
GCCGATGCCATGTCCCAACATGTCTTACACTAGCACACATCTCGA
Found at i:32593349 original size:140 final size:141
Alignment explanation
Indices: 32593089--32593351 Score: 329
Period size: 140 Copynumber: 1.9 Consensus size: 141
32593079 TGGGTAAGGT
* * *
32593089 GCCGATGCCATGTCCCGAACACGGTCTTACACTAGCTCATATCTCATGTCGATGCCATGTCCCAA
1 GCCGATGCCATGTCCCGAACACGGTCTTACACTAGCACACATCTCATGTCGATGCCATGTACCAA
* * *
32593154 ACATGGTCTTACACTGATTATCATCTCGTAGCCGATGCATGTCTCAGACATGTCTTACACAGGTT
66 ACATGGTCTTACACTGACTATCATATCGTAGCCGATGCATGTCCCAGACATGTCTTACACAGGTT
32593219 TACGTCTCGAG
131 TACGTCTCGAG
* * *
32593230 GCCGATG-CATGTCCC-ATACA-TGTCTTACACTAGCACCCATCTCGATG-CTGATTCCATGTAC
1 GCCGATGCCATGTCCCGA-ACACGGTCTTACACTAGCACACATCTC-ATGTC-GATGCCATGTAC
* * * * *
32593291 CAAGCATGGTCTTACACTGGCTCTCCTAAT-GTAGCTGATGCATGTCCCAGACATGTCTTAC
63 CAAACATGGTCTTACACTGACTATCAT-ATCGTAGCCGATGCATGTCCCAGACATGTCTTAC
32593352 TCTAGCCCAC
Statistics
Matches: 104, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
139 21 0.20
140 75 0.72
141 8 0.08
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.29
Consensus pattern (141 bp):
GCCGATGCCATGTCCCGAACACGGTCTTACACTAGCACACATCTCATGTCGATGCCATGTACCAA
ACATGGTCTTACACTGACTATCATATCGTAGCCGATGCATGTCCCAGACATGTCTTACACAGGTT
TACGTCTCGAG
Found at i:32594668 original size:28 final size:28
Alignment explanation
Indices: 32594633--32594696 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
32594623 TGACATTTTT
*
32594633 CTAAGTGAAATAAGTCCATGGCAATT-TG
1 CTAAGTGAAATAAGCCCATGGC-ATTGTG
32594661 CTAAGTGAAATAAGCCCATGGCATTGTG
1 CTAAGTGAAATAAGCCCATGGCATTGTG
32594689 CTAAGTGA
1 CTAAGTGA
32594697 GAAATTTCTC
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 3 0.09
28 31 0.91
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.27
Consensus pattern (28 bp):
CTAAGTGAAATAAGCCCATGGCATTGTG
Found at i:32596176 original size:40 final size:40
Alignment explanation
Indices: 32596132--32596319 Score: 308
Period size: 40 Copynumber: 4.7 Consensus size: 40
32596122 GCTACTAGCT
32596132 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
32596172 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
32596212 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
32596252 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
32596291 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
32596320 CAATCCGAAT
Statistics
Matches: 138, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
38 1 0.01
39 33 0.24
40 103 0.75
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:32598009 original size:51 final size:51
Alignment explanation
Indices: 32597933--32598163 Score: 367
Period size: 51 Copynumber: 4.5 Consensus size: 51
32597923 TTAGGGTTGT
* *
32597933 CACAAGTGTGGTACTATATGAAGGCCACTTTGTGAATATAATAGCTTTGGA
1 CACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAATAAAATAGCTTTGGA
* * *
32597984 CACAAGTGTGGTACTATGTGAAGGCCACTTTTTGAATATAATAGCTTCGGA
1 CACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAATAAAATAGCTTTGGA
*
32598035 CACAAGTGTGGTACTATGTAAAGGCCACTTTGTGAATAAAATAGCTTTGGA
1 CACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAATAAAATAGCTTTGGA
32598086 CACAAGTGTGGTACTATGTG-AGAGCCACTTTGTGAATAAAATAGCTTTGG-
1 CACAAGTGTGGTACTATGTGAAG-GCCACTTTGTGAATAAAATAGCTTTGGA
*
32598136 CTACAAGGGTGGTACTATGTGAAGGCCA
1 C-ACAAGTGTGGTACTATGTGAAGGCCA
32598164 TCGTGTATCC
Statistics
Matches: 168, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
50 3 0.02
51 163 0.97
52 2 0.01
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (51 bp):
CACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAATAAAATAGCTTTGGA
Found at i:32601014 original size:23 final size:22
Alignment explanation
Indices: 32600954--32601022 Score: 70
Period size: 21 Copynumber: 3.1 Consensus size: 22
32600944 TCATTCATTC
* *
32600954 ATTAAGGCCAAATTGTTTACAAA
1 ATTAAGG-CAAACTATTTACAAA
*
32600977 ATGAAGG-AAACTATTTACAAA
1 ATTAAGGCAAACTATTTACAAA
*
32600998 ATTAAGGTCAAACTA-TTACCAA
1 ATTAAGG-CAAACTATTTACAAA
32601020 ATT
1 ATT
32601023 TATCTACAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
21 18 0.46
22 9 0.23
23 12 0.31
ACGTcount: A:0.46, C:0.13, G:0.12, T:0.29
Consensus pattern (22 bp):
ATTAAGGCAAACTATTTACAAA
Found at i:32601392 original size:21 final size:21
Alignment explanation
Indices: 32601366--32601412 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
32601356 AGCTTTTGCC
* *
32601366 TTGGGGCAGCTTGTTGGTAAG
1 TTGGGGCAGCTTCTTGATAAG
* *
32601387 TTGGGGTAGCTTCTTGATGAG
1 TTGGGGCAGCTTCTTGATAAG
32601408 TTGGG
1 TTGGG
32601413 ACAAACACTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.13, C:0.09, G:0.43, T:0.36
Consensus pattern (21 bp):
TTGGGGCAGCTTCTTGATAAG
Found at i:32602079 original size:63 final size:65
Alignment explanation
Indices: 32601998--32602143 Score: 199
Period size: 65 Copynumber: 2.3 Consensus size: 65
32601988 GTAAAGGCAT
* *
32601998 CATGTGATGGCAT-AATAA-G-CATGTGATATTAAAAAATAGTAAAGGCGGGATGGGAAACACCA
1 CATGTGATGG-ATGAATAAGGACATGTGATATTAAAAAATAGTAAAGGCAGGATAGGAAACACCA
32602060 A
65 A
* * * *
32602061 CATGTGATGGATGAATAAGGACATGTGATATTAAAAAATAGTAAAGGCATGCTAGGACACACCAG
1 CATGTGATGGATGAATAAGGACATGTGATATTAAAAAATAGTAAAGGCAGGATAGGAAACACCAA
*
32602126 CATGTGATGGAAGAATAA
1 CATGTGATGGATGAATAA
32602144 AGGCTTACAT
Statistics
Matches: 73, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
62 2 0.03
63 15 0.21
64 1 0.01
65 55 0.75
ACGTcount: A:0.42, C:0.11, G:0.25, T:0.21
Consensus pattern (65 bp):
CATGTGATGGATGAATAAGGACATGTGATATTAAAAAATAGTAAAGGCAGGATAGGAAACACCAA
Found at i:32609968 original size:42 final size:43
Alignment explanation
Indices: 32609900--32609982 Score: 107
Period size: 42 Copynumber: 2.0 Consensus size: 43
32609890 ACGACCTACT
*
32609900 CACATGGTCCTGTACCTCAGTTGCACGGGTGTGT-CCCCTAGC
1 CACATGGTCCTGTACCTCAGTTGCACGGCTGTGTACCCCTAGC
* * *
32609942 CACATGGTCGTTTATCTCA-TTCGCACGGCTGTGTACCCCTA
1 CACATGGTCCTGTACCTCAGTT-GCACGGCTGTGTACCCCTA
32609983 TCATACGATC
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
41 2 0.06
42 27 0.77
43 6 0.17
ACGTcount: A:0.16, C:0.33, G:0.23, T:0.29
Consensus pattern (43 bp):
CACATGGTCCTGTACCTCAGTTGCACGGCTGTGTACCCCTAGC
Found at i:32611925 original size:25 final size:25
Alignment explanation
Indices: 32611897--32611946 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
32611887 TAACCAAAGA
*
32611897 AATCTAATTCACTACATATTCATAT
1 AATCCAATTCACTACATATTCATAT
* *
32611922 AATCCAATTCATTGCATATTCATAT
1 AATCCAATTCACTACATATTCATAT
32611947 TCGTACAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.38, C:0.20, G:0.02, T:0.40
Consensus pattern (25 bp):
AATCCAATTCACTACATATTCATAT
Found at i:32614764 original size:27 final size:27
Alignment explanation
Indices: 32614724--32614889 Score: 190
Period size: 27 Copynumber: 6.1 Consensus size: 27
32614714 AGGAAGCGTC
*
32614724 CTGGTGGCTATGCCACAAATATCTGAT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* *
32614751 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* * *
32614778 CTGATGGCTCTGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* *
32614805 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* *
32614832 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAAATATCTG-AT
* * * *
32614860 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAAATATCTGAT
32614886 CTGG
1 CTGG
32614890 CAGCCATGCT
Statistics
Matches: 118, Mismatches: 20, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
26 5 0.04
27 98 0.83
28 15 0.13
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAAATATCTGAT
Found at i:32614880 original size:81 final size:81
Alignment explanation
Indices: 32614724--32614889 Score: 237
Period size: 81 Copynumber: 2.0 Consensus size: 81
32614714 AGGAAGCGTC
*
32614724 CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGATGGCTCT
1 CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGATGACTCT
32614789 GCCACGATTATCTGAT
66 GCCACGATTATCTGAT
* * * *
32614805 CTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGAT-TATCTGTATCTGGTGACT
1 CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCAC-ATATATCTGT-TCTGATGACT
* *
32614869 CTGTCAC-ATTATCTGTT
64 CTGCCACGATTATCTGAT
32614886 CTGG
1 CTGG
32614890 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
81 60 0.79
82 16 0.21
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.36
Consensus pattern (81 bp):
CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGATGACTCT
GCCACGATTATCTGAT
Found at i:32614889 original size:54 final size:54
Alignment explanation
Indices: 32614724--32614889 Score: 262
Period size: 54 Copynumber: 3.1 Consensus size: 54
32614714 AGGAAGCGTC
* * *
32614724 CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
*
32614778 CTGATGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
32614832 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTCTGCCACGATTATCTG-ATCTGGTGGCTCTGCCACATATATCTGTT
32614886 CTGG
1 CTGG
32614890 CAGCCATGCT
Statistics
Matches: 104, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
54 86 0.83
55 18 0.17
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:32622836 original size:54 final size:54
Alignment explanation
Indices: 32622759--32622924 Score: 244
Period size: 54 Copynumber: 3.1 Consensus size: 54
32622749 AGGAAGCGTC
* * * *
32622759 CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGGT
1 CTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
32622813 CTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* * **
32622867 CTAGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTTACAT-TATCTGTT
1 CTGGTGGCTCTGCCACGATTATCTG-ATCTGGTGGCTCTGCCACATATATCTGTT
32622921 CTGG
1 CTGG
32622925 CAGCCATGCT
Statistics
Matches: 102, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
54 85 0.83
55 17 0.17
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:32622914 original size:27 final size:26
Alignment explanation
Indices: 32622759--32622924 Score: 197
Period size: 27 Copynumber: 6.2 Consensus size: 26
32622749 AGGAAGCGTC
* *
32622759 CTGGTGGCTATGCCACAAATATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
32622786 CTGGTGGCTCTGCCACATATATCTGGT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
32622813 CTGGTGGCTCTGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
32622840 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
32622867 CTAGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* ** *
32622895 CTGGTGACTCTGTTACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
32622921 CTGG
1 CTGG
32622925 CAGCCATGCT
Statistics
Matches: 122, Mismatches: 12, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
26 8 0.07
27 97 0.80
28 17 0.14
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:32622915 original size:81 final size:81
Alignment explanation
Indices: 32622759--32622924 Score: 219
Period size: 81 Copynumber: 2.0 Consensus size: 81
32622749 AGGAAGCGTC
* * *
32622759 CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGGTCTGGTGGCTCT
1 CTGGTGGCTATGCCACAAATATCTGATCTAGTGGCTCTGCCACATATATCTGATCTGGTGACTCT
32622824 GCCACGATTATCTGAT
66 GCCACGATTATCTGAT
* * *
32622840 CTGGTGGCTCTGCCACATATATCTGTTCTAGTGGCTCTGCCACGAT-TATCTGTATCTGGTGACT
1 CTGGTGGCTATGCCACAAATATCTGATCTAGTGGCTCTGCCAC-ATATATCTG-ATCTGGTGACT
** *
32622904 CTGTTAC-ATTATCTGTT
64 CTGCCACGATTATCTGAT
32622921 CTGG
1 CTGG
32622925 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
81 58 0.78
82 16 0.22
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (81 bp):
CTGGTGGCTATGCCACAAATATCTGATCTAGTGGCTCTGCCACATATATCTGATCTGGTGACTCT
GCCACGATTATCTGAT
Found at i:32624134 original size:14 final size:14
Alignment explanation
Indices: 32624115--32624143 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
32624105 GAAGTTTGGC
32624115 AAAAATATCAATTT
1 AAAAATATCAATTT
32624129 AAAAATATCAATTT
1 AAAAATATCAATTT
32624143 A
1 A
32624144 GATTATAGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AAAAATATCAATTT
Found at i:32628543 original size:20 final size:20
Alignment explanation
Indices: 32628518--32628559 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
32628508 TATTTAATCT
32628518 AAGCGTTTGGGAATGTACTC
1 AAGCGTTTGGGAATGTACTC
32628538 AAGCGTTTGGGAATGTACTC
1 AAGCGTTTGGGAATGTACTC
32628558 AA
1 AA
32628560 CCATTTCTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.29
Consensus pattern (20 bp):
AAGCGTTTGGGAATGTACTC
Found at i:32635555 original size:19 final size:19
Alignment explanation
Indices: 32635528--32635574 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 19
32635518 TTTACAAGAA
32635528 AATAT-TGAAAAATA-AAG
1 AATATATGAAAAATATAAG
32635545 AATATAGTGAAAAATATAAG
1 AATATA-TGAAAAATATAAG
32635565 AATATATGAA
1 AATATATGAA
32635575 TATTGTAGTC
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.19
19 13 0.48
20 9 0.33
ACGTcount: A:0.62, C:0.00, G:0.13, T:0.26
Consensus pattern (19 bp):
AATATATGAAAAATATAAG
Found at i:32636119 original size:22 final size:22
Alignment explanation
Indices: 32636094--32636169 Score: 82
Period size: 22 Copynumber: 3.5 Consensus size: 22
32636084 TTCACACTTT
*
32636094 GGTGCTTAGTGATTTTCATTTC
1 GGTGCTTACTGATTTTCATTTC
32636116 GGTGCTTACTG-TTTTGCATTTC
1 GGTGCTTACTGATTTT-CATTTC
* * * *
32636138 TGTGCTTATTGATTTGCACTTC
1 GGTGCTTACTGATTTTCATTTC
*
32636160 GGTGCCTACT
1 GGTGCTTACT
32636170 CTTCTATTAG
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
21 4 0.09
22 37 0.84
23 3 0.07
ACGTcount: A:0.12, C:0.18, G:0.22, T:0.47
Consensus pattern (22 bp):
GGTGCTTACTGATTTTCATTTC
Found at i:32643794 original size:22 final size:22
Alignment explanation
Indices: 32643769--32643813 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
32643759 TATTATTTTC
*
32643769 TACTATTGTCATTATTAATATA
1 TACTATTATCATTATTAATATA
*
32643791 TACTATTATTATTATTAATATA
1 TACTATTATCATTATTAATATA
32643813 T
1 T
32643814 TGCTACTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.38, C:0.07, G:0.02, T:0.53
Consensus pattern (22 bp):
TACTATTATCATTATTAATATA
Found at i:32643800 original size:3 final size:3
Alignment explanation
Indices: 32643779--32643963 Score: 121
Period size: 3 Copynumber: 61.7 Consensus size: 3
32643769 TACTATTGTC
* * * ** *
32643779 ATT ATT AAT ATAT ACT ATT ATT ATT ATT AAT A-T ATT GCT ACT ATT
1 ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * **
32643824 ATT ATT ATT ACT AAT ATC ACT ATT ACC ATT -TT -TT ATT ACTT -TT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT
* *
32643867 ATT ATT ATT ATT ATT ATT ATT ATT ATTT ACT ATCT AAT A-T ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT AT-T ATT ATT ATT ATT
* * *
32643913 ATT ACCTT ATT ATT ATT ATT ACT ATT -GT ATT ATT ACT ATT ATT ATT
1 ATT A--TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
32643959 ATT AT
1 ATT AT
32643964 ATTTTCTTTT
Statistics
Matches: 142, Mismatches: 29, Indels: 22
0.74 0.15 0.11
Matches are distributed among these distances:
2 11 0.08
3 119 0.84
4 9 0.06
5 3 0.02
ACGTcount: A:0.34, C:0.08, G:0.01, T:0.57
Consensus pattern (3 bp):
ATT
Found at i:32644151 original size:3 final size:3
Alignment explanation
Indices: 32644122--32644333 Score: 105
Period size: 3 Copynumber: 71.7 Consensus size: 3
32644112 CAAACTTTAG
* * * **
32644122 ATT ATTT ATT ATT -TGT ATT GTT GTT ATT ATT ACT ATTT ATT ATT ACC
1 ATT A-TT ATT ATT AT-T ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT
* * * *
32644169 ATT ATT ATT ACT ATT ATT TTT ACTT -TT ATT ACT ATT ACT A-T ATT
1 ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT
* * * * * * * *
32644213 ATT TTT ATT TTT ATT -TT CTT A-T ACT ATT ATC ATC ATT ATT AAT ACT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * **
32644259 AAT ATT AAT ATT CTT ATT ATT ACT ATT ATT ATT ATC ATT AGC ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* *
32644307 ATT -TT -TT ACT ACT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
32644334 CGTTTTCATT
Statistics
Matches: 158, Mismatches: 41, Indels: 20
0.72 0.19 0.09
Matches are distributed among these distances:
2 13 0.08
3 137 0.87
4 8 0.05
ACGTcount: A:0.30, C:0.08, G:0.02, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:32644224 original size:29 final size:30
Alignment explanation
Indices: 32644171--32644227 Score: 89
Period size: 29 Copynumber: 1.9 Consensus size: 30
32644161 TTATTACCAT
*
32644171 TATTATTACTATTATTTTTACTTTTATTAC
1 TATTACTACTATTATTTTTACTTTTATTAC
*
32644201 TATTACTA-TATTATTTTTATTTTTATT
1 TATTACTACTATTATTTTTACTTTTATT
32644228 TTCTTATACT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 18 0.72
30 7 0.28
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67
Consensus pattern (30 bp):
TATTACTACTATTATTTTTACTTTTATTAC
Found at i:32656280 original size:44 final size:44
Alignment explanation
Indices: 32656232--32656644 Score: 167
Period size: 44 Copynumber: 9.4 Consensus size: 44
32656222 GCGGAGTAGA
* *
32656232 TCGAAGCTACAAATCTTTTCTCCCTAAAATGGCACTGGAGCT-GC
1 TCGAAGCTACAAATCTTTTCTCCTTGAAATGGCACTGGAG-TGGC
* * * * * * ** * *
32656276 TCGAAGCCATAATTCATATCTCCTTGAAGTTTCAAC-GGAGTAGA
1 TCGAAGCTACAAATCTTTTCTCCTTGAAATGGC-ACTGGAGTGGC
*
32656320 TCGAAGCTACAAATCTCTTCTCCTTGAAATGGCACTGGAGTGGC
1 TCGAAGCTACAAATCTTTTCTCCTTGAAATGGCACTGGAGTGGC
* * * ** * * ** *
32656364 TCGAAGCCAC-AAT-TTGCATCTCCTTAAAATTTCAGTAGAGAAGA
1 TCGAAGCTACAAATCTT--TTCTCCTTGAAATGGCACTGGAGTGGC
* * * *
32656408 TCGAAGCTGCAAATCTCTTCTCCCTGAAATGGCACTAGAGTGGC
1 TCGAAGCTACAAATCTTTTCTCCTTGAAATGGCACTGGAGTGGC
* * * * * * * ** * *
32656452 TCGAAGCCATAATTCGTATCTCTTTGAAGTTTCAGC-GGAGTAGA
1 TCGAAGCTACAAATCTTTTCTCCTTGAAATGGCA-CTGGAGTGGC
* * * * *
32656496 TCAAAGCTACAAATCTCTTCTCCCTGAAATGGCACTAGAGTAGC
1 TCGAAGCTACAAATCTTTTCTCCTTGAAATGGCACTGGAGTGGC
* * * ** * ** *
32656540 TCAAAGCCAC-AAT-TTGTATCTCCTTGAAGTTTCAGC-GAAGAAGA
1 TCGAAGCTACAAATCTT-T-TCTCCTTGAAATGGCA-CTGGAGTGGC
* * * *
32656584 TCGAAGCTACAAATCTCTTCTCCATGAAATGGCGCTAGAGTGGC
1 TCGAAGCTACAAATCTTTTCTCCTTGAAATGGCACTGGAGTGGC
* * *
32656628 TCAAAGCCACAAGTCTT
1 TCGAAGCTACAAATCTT
32656645 ATCTACCTGA
Statistics
Matches: 253, Mismatches: 101, Indels: 30
0.66 0.26 0.08
Matches are distributed among these distances:
42 2 0.01
43 12 0.05
44 226 0.89
45 11 0.04
46 2 0.01
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (44 bp):
TCGAAGCTACAAATCTTTTCTCCTTGAAATGGCACTGGAGTGGC
Found at i:32656316 original size:88 final size:88
Alignment explanation
Indices: 32656196--32656667 Score: 624
Period size: 88 Copynumber: 5.4 Consensus size: 88
32656186 GCTAGAAATT
* * *
32656196 ACAATTCGTATCTCCTTGAAGTTTTAGCGGAGTAGATCGAAGCTACAAATCTTTTCTCCCTAAAA
1 ACAATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
*
32656261 TGGCACTGGAGCT-GCTCGAAGCC
66 TGGCACTAGAG-TGGCTCGAAGCC
* * * *
32656284 ATAATTCATATCTCCTTGAAGTTTCAACGGAGTAGATCGAAGCTACAAATCTCTTCTCCTTGAAA
1 ACAATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
*
32656349 TGGCACTGGAGTGGCTCGAAGCC
66 TGGCACTAGAGTGGCTCGAAGCC
* * * * ** * *
32656372 ACAATTTGCATCTCCTTAAAATTTCAGTAGAGAAGATCGAAGCTGCAAATCTCTTCTCCCTGAAA
1 ACAATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
32656437 TGGCACTAGAGTGGCTCGAAGCC
66 TGGCACTAGAGTGGCTCGAAGCC
* * *
32656460 ATAATTCGTATCTCTTTGAAGTTTCAGCGGAGTAGATCAAAGCTACAAATCTCTTCTCCCTGAAA
1 ACAATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
* *
32656525 TGGCACTAGAGTAGCTCAAAGCC
66 TGGCACTAGAGTGGCTCGAAGCC
* * * *
32656548 ACAATTTGTATCTCCTTGAAGTTTCAGCGAAGAAGATCGAAGCTACAAATCTCTTCTCCATGAAA
1 ACAATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
* *
32656613 TGGCGCTAGAGTGGCTCAAAGCC
66 TGGCACTAGAGTGGCTCGAAGCC
* * * *
32656636 ACAAGTCTTATCTACC-TGAAGTTGCAGTGGAG
1 ACAATTCGTATCT-CCTTGAAGTTTCAGCGGAG
32656668 CAAATTGAAG
Statistics
Matches: 334, Mismatches: 48, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
87 1 0.00
88 331 0.99
89 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (88 bp):
ACAATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
TGGCACTAGAGTGGCTCGAAGCC
Found at i:32656707 original size:45 final size:45
Alignment explanation
Indices: 32656641--32657248 Score: 328
Period size: 44 Copynumber: 13.4 Consensus size: 45
32656631 AAGCCACAAG
*
32656641 TCTTATCTAC-CTGAAGTTGCAGTGGAGCAAATTGAAGATAGCAAA
1 TCTTATCT-CTCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAA
* * *
32656686 TCTTATTTCTCTGAAGCTGCAGTGGAACAGATTGAAGCTATAAGTCACAAA
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAG--AT-AG---CAAA
* * * *
32656737 TCTTATCTCTCTGAAGTTGCAGTAGAGTAGA-TCAA-A-A-TAAA
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAA
* * * * *
32656778 CCTTATCTCTCTGAAGTTGCAATGGAGCAGGTTGAAG-TCGCTAA
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAA
* * *
32656822 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAATATAGCAAA
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAA
* * * *
32656867 TTTTATTTCCCTGAAGTTGCAGTGGA-CAGATTGAAGCTATAAATCACAAA
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAG--AT--A--GCAAA
* * * * *
32656917 TCTTATCTCTCTGAAGTTGTAGTAGAGTATA-TCAA-A-A-CAAA
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAA
* * * * * *
32656958 CCTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTGAAG-TCA-CTAG
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGAT-AGCAAA
* * * * *
32657002 TCTTATCTC-CTTGAAGTTGTAATGGAGCAGACTGAAGATAGTAGA
1 TCTTATCTCTC-TGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAA
* * * * *
32657047 TCTTATTTTTCCTGAAGTTGCAGTGGAACAGATTGAAACTATAAGTAAATAGA
1 TCTTATCTCT-CTGAAGTTGCAGTGGAGCAGATTG-AA-GAT-AG--CA-A-A
* * *
32657100 TTTTATCTCTCTGAAGTTGCAGTAGAGCAGA-TCAA-A-A-CAAA
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAA
* * *
32657141 CCTTATCTC-CTTGAAGTTGTAGTGGAGCAGGTTGAAG-T--CATAA
1 TCTTATCTCTC-TGAAGTTGCAGTGGAGCAGATTGAAGATAGCA-AA
* * *
32657184 GTCTTATCTC-CATGAAGTTGCAGTGGAGCAGGTTCAAAGCTA-CAAA
1 -TCTTATCTCTC-TGAAGTTGCAGTGGAGCAGATT-GAAGATAGCAAA
* *
32657230 CCTTATTTCTCTGAAGTTG
1 TCTTATCTCTCTGAAGTTG
32657249 TACTGGATTG
Statistics
Matches: 432, Mismatches: 86, Indels: 90
0.71 0.14 0.15
Matches are distributed among these distances:
40 1 0.00
41 83 0.19
42 12 0.03
43 4 0.01
44 108 0.25
45 87 0.20
46 26 0.06
47 9 0.02
48 6 0.01
49 2 0.00
50 33 0.08
51 34 0.08
52 19 0.04
53 8 0.02
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (45 bp):
TCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAA
Found at i:32657158 original size:183 final size:181
Alignment explanation
Indices: 32656639--32657214 Score: 822
Period size: 180 Copynumber: 3.2 Consensus size: 181
32656629 CAAAGCCACA
* * * *
32656639 AGTCTTATCTACCTGAAGTTGCAGTGGAGCAAATTGAAGATAGCAAATCTTATTTCT-CTGAAGC
1 AGTCTTATCT-CCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTTTCCTGAAGT
32656703 TGCAGTGGAACAGATTGAAGCTATAAGTCACAAATCTTATCTCTCTGAAGTTGCAGTAGAGTAGA
65 TGCAGTGGAACAGATTGAAGCTATAAGTCACAAATCTTATCTCTCTGAAGTTGCAGTAGAGTAGA
* * * *
32656768 TCAAAATAAACCTTATCT-CTCTGAAGTTGCAATGGAGCAGGTTGAAGTCGCT
130 TCAAAACAAACCTTATCTCCT-TGAAGTTGTAGTGGAGCAGGTTGAAGTCACT
* * * *
32656820 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAATATAGCAAATTTTA-TTTCCCTGAAGT
1 AGTCTTATCT-CCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTTTCCTGAAGT
* * *
32656884 TGCAGTGG-ACAGATTGAAGCTATAAATCACAAATCTTATCTCTCTGAAGTTGTAGTAGAGTATA
65 TGCAGTGGAACAGATTGAAGCTATAAGTCACAAATCTTATCTCTCTGAAGTTGCAGTAGAGTAGA
*
32656948 TCAAAACAAACCTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTGAAGTCACT
130 TCAAAACAAACCTTATCTCCTTGAAGTTGTAGTGGAGCAGGTTGAAGTCACT
* * * *
32657000 AGTCTTATCTCCTTGAAGTTGTAATGGAGCAGACTGAAGATAGTAGATCTTATTTTTCCTGAAGT
1 AGTCTTATCTCC-TGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTTTCCTGAAGT
* * * *
32657065 TGCAGTGGAACAGATTGAAACTATAAGT-AAATAGATTTTATCTCTCTGAAGTTGCAGTAGAGCA
65 TGCAGTGGAACAGATTGAAGCTATAAGTCACA-A-ATCTTATCTCTCTGAAGTTGCAGTAGAGTA
32657129 GATCAAAACAAACCTTATCTCCTTGAAGTTGTAGTGGAGCAGGTTGAAGTCA-T
128 GATCAAAACAAACCTTATCTCCTTGAAGTTGTAGTGGAGCAGGTTGAAGTCACT
32657182 AAGTCTTATCTCCATGAAGTTGCAGTGGAGCAG
1 -AGTCTTATCTCC-TGAAGTTGCAGTGGAGCAG
32657215 GTTCAAAGCT
Statistics
Matches: 351, Mismatches: 36, Indels: 14
0.88 0.09 0.03
Matches are distributed among these distances:
179 2 0.01
180 142 0.40
181 82 0.23
182 19 0.05
183 106 0.30
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (181 bp):
AGTCTTATCTCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTTTCCTGAAGTT
GCAGTGGAACAGATTGAAGCTATAAGTCACAAATCTTATCTCTCTGAAGTTGCAGTAGAGTAGAT
CAAAACAAACCTTATCTCCTTGAAGTTGTAGTGGAGCAGGTTGAAGTCACT
Found at i:32660022 original size:3 final size:3
Alignment explanation
Indices: 32660014--32660186 Score: 73
Period size: 3 Copynumber: 57.0 Consensus size: 3
32660004 AAATAGTACC
* *
32660014 AAT AAT AAT AAAT AAT AA- AAGT AAT AAT AAT CAC AAT AAT AAT AAT
1 AAT AAT AAT -AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * * ** *
32660060 AAT AAT AAAG AAT AAC AAT AA- CAC AAG AAC AA- AAG AAT GGT GAT
1 AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * * ** *
32660104 AAT ACT ACT ACT ACT AAA AAT AAT AAT GAT AGT AAT AGC AAT AAA AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
32660152 AAAT AAT AAT AAT AAT AAT AAT AAGT GAT AAT AAT
1 -AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT
32660187 TAGAATAAAG
Statistics
Matches: 129, Mismatches: 33, Indels: 16
0.72 0.19 0.09
Matches are distributed among these distances:
2 5 0.04
3 112 0.87
4 12 0.09
ACGTcount: A:0.61, C:0.06, G:0.07, T:0.25
Consensus pattern (3 bp):
AAT
Found at i:32660051 original size:12 final size:12
Alignment explanation
Indices: 32659958--32660067 Score: 54
Period size: 12 Copynumber: 9.4 Consensus size: 12
32659948 AGAAATTTAA
*
32659958 AATAATAATAAT
1 AATAATAACAAT
32659970 AATAATATA-AAT
1 AATAATA-ACAAT
*
32659982 AGTAATAGA-AA-
1 AATAATA-ACAAT
**
32659993 AGCAATAACAGA-
1 AATAATAACA-AT
* *
32660005 AATAGTACCAAT
1 AATAATAACAAT
32660017 AATAAT-A-AAT
1 AATAATAACAAT
*
32660027 AATAA-AAGTAAT
1 AATAATAA-CAAT
*
32660039 AATAATCACAAT
1 AATAATAACAAT
*
32660051 AATAATAATAAT
1 AATAATAACAAT
32660063 AATAA
1 AATAA
32660068 AGAATAACAA
Statistics
Matches: 77, Mismatches: 13, Indels: 16
0.73 0.12 0.15
Matches are distributed among these distances:
10 10 0.13
11 8 0.10
12 57 0.74
13 2 0.03
ACGTcount: A:0.64, C:0.05, G:0.05, T:0.25
Consensus pattern (12 bp):
AATAATAACAAT
Found at i:32660168 original size:22 final size:22
Alignment explanation
Indices: 32660143--32660186 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
32660133 TAGTAATAGC
32660143 AATAAAAATAAATAATAATAAT
1 AATAAAAATAAATAATAATAAT
* * *
32660165 AATAATAATAAGTGATAATAAT
1 AATAAAAATAAATAATAATAAT
32660187 TAGAATAAAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.30
Consensus pattern (22 bp):
AATAAAAATAAATAATAATAAT
Found at i:32661444 original size:3 final size:3
Alignment explanation
Indices: 32661423--32661589 Score: 83
Period size: 3 Copynumber: 55.7 Consensus size: 3
32661413 CTCTACAGTC
* * * **
32661423 ATT ATT AAT ATAT ACT ATT ATT ATT AAT A-T ATT GCT ATT ATT ATT
1 ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * ** * *
32661468 ACT AAT ATC ACT ATT ACC ATT -TT -TT ATT ACT GTT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * *
32661514 ATT ATTT ACT ATCT AAT A-T ATT ATT ATT ACCTT TTT ATT ATT ATT ACT
1 ATT A-TT ATT AT-T ATT ATT ATT ATT ATT A--TT ATT ATT ATT ATT ATT
* *
32661562 ATT -GT ATT ATT ACT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
32661590 ATTTTCTTTT
Statistics
Matches: 120, Mismatches: 35, Indels: 18
0.69 0.20 0.10
Matches are distributed among these distances:
2 9 0.08
3 102 0.85
4 7 0.06
5 2 0.02
ACGTcount: A:0.33, C:0.08, G:0.02, T:0.57
Consensus pattern (3 bp):
ATT
Found at i:32661510 original size:28 final size:31
Alignment explanation
Indices: 32661479--32661589 Score: 79
Period size: 31 Copynumber: 3.6 Consensus size: 31
32661469 CTAATATCAC
*
32661479 TATTACCATTTTTTATTA-CT-GT-TATTAT
1 TATTACCATTTTTTATTATCTAATATATTAT
** * *
32661507 TATTATTATTATTTACTATCTAATATATTAT
1 TATTACCATTTTTTATTATCTAATATATTAT
* *
32661538 TATTACCTTTTTATTATTAT-TACTAT-TGTAT
1 TATTACCATTTT-TTATTATCTAATATAT-TAT
*
32661569 TATTACTATTATTATTATTAT
1 TATTACCATT-TT-TTATTAT
32661590 ATTTTCTTTT
Statistics
Matches: 64, Mismatches: 13, Indels: 8
0.75 0.15 0.09
Matches are distributed among these distances:
28 14 0.22
29 2 0.03
30 2 0.03
31 30 0.47
32 16 0.25
ACGTcount: A:0.30, C:0.08, G:0.02, T:0.60
Consensus pattern (31 bp):
TATTACCATTTTTTATTATCTAATATATTAT
Found at i:32661554 original size:17 final size:17
Alignment explanation
Indices: 32661532--32661573 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
32661522 CTATCTAATA
*
32661532 TATTATTATTACCT-TTT
1 TATTATTATTA-CTATTG
32661549 TATTATTATTACTATTG
1 TATTATTATTACTATTG
32661566 TATTATTA
1 TATTATTA
32661574 CTATTATTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 2 0.09
17 21 0.91
ACGTcount: A:0.29, C:0.07, G:0.02, T:0.62
Consensus pattern (17 bp):
TATTATTATTACTATTG
Found at i:32661569 original size:14 final size:15
Alignment explanation
Indices: 32661552--32661592 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
32661542 ACCTTTTTAT
32661552 TATTATTACTATT-G
1 TATTATTACTATTAG
*
32661566 TATTATTACTATTAT
1 TATTATTACTATTAG
32661581 TATTATTA-TATT
1 TATTATTACTATT
32661593 TTCTTTTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 17 0.68
15 8 0.32
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61
Consensus pattern (15 bp):
TATTATTACTATTAG
Found at i:32661726 original size:26 final size:25
Alignment explanation
Indices: 32661680--32661730 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 25
32661670 TTATTTATAT
32661680 ATCATTACTTTTATTGTTATCATTTC
1 ATCATTACTTTTATTGTTATC-TTTC
32661706 ATCATTTA-TTTTATT-TATATCTTTC
1 ATCA-TTACTTTTATTGT-TATCTTTC
32661731 TAAATAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
25 5 0.22
26 15 0.65
27 3 0.13
ACGTcount: A:0.24, C:0.14, G:0.02, T:0.61
Consensus pattern (25 bp):
ATCATTACTTTTATTGTTATCTTTC
Found at i:32661772 original size:3 final size:3
Alignment explanation
Indices: 32661751--32661986 Score: 149
Period size: 3 Copynumber: 78.7 Consensus size: 3
32661741 CAAACTTTAG
* * **
32661751 ATT ATTT ATT ATT -TGT ATT ATT GTT ATT ATT ACT ATTT ATT ATT ACC
1 ATT A-TT ATT ATT AT-T ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT
* * * *
32661798 ATT ATT ATT ACT ATT ATT TTT ACTT -TT ATT ACT ATT ACT A-T ATT
1 ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT
* * * * * * * *
32661842 ATT TTT ATT TTT ATT TTCT ATT ACT ATT ATC ATC ATT ATT AAT ACT
1 ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * *
32661888 AAT ATT AAT ATT CTT ATT ATT ACT ATT ATT ATT ATC ATT AGT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * *
32661936 ATT -TT -TT ACT ACT ACT ATT ATT ATT ATT ATT ATC AAT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
32661982 ATT AT
1 ATT AT
32661987 CGTTTTCATT
Statistics
Matches: 179, Mismatches: 45, Indels: 18
0.74 0.19 0.07
Matches are distributed among these distances:
2 9 0.05
3 160 0.89
4 10 0.06
ACGTcount: A:0.31, C:0.08, G:0.01, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:32663231 original size:2 final size:2
Alignment explanation
Indices: 32663224--32663254 Score: 53
Period size: 2 Copynumber: 15.0 Consensus size: 2
32663214 TCTCAATTTC
32663224 AT AT AT AT AT AT AT AT AT AT AT AT AT CAT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT
32663255 TACAAAGTCC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 26 0.93
3 2 0.07
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:32666288 original size:26 final size:24
Alignment explanation
Indices: 32666252--32666300 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
32666242 TCAAAAATTA
* *
32666252 TAAAAATAAAAAATAAATCATAAT
1 TAAAAATAAAAAAAAAAGCATAAT
32666276 TAAAAATTCAAAAAAAAAAGCATAA
1 TAAAAA-T-AAAAAAAAAAGCATAA
32666301 AGTACGCATG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.29
25 1 0.05
26 14 0.67
ACGTcount: A:0.71, C:0.06, G:0.02, T:0.20
Consensus pattern (24 bp):
TAAAAATAAAAAAAAAAGCATAAT
Found at i:32667191 original size:29 final size:30
Alignment explanation
Indices: 32667141--32667198 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
32667131 TTAAAATTTA
* *
32667141 AAAAATAAAGAAATTAATTTTC-ATGAAAT
1 AAAAATAAAGAAACTAAATTTCAATGAAAT
* *
32667170 AAAAATAGATAAACTAAATTTCAATGAAA
1 AAAAATAAAGAAACTAAATTTCAATGAAA
32667199 GATATAAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 18 0.75
30 6 0.25
ACGTcount: A:0.60, C:0.05, G:0.07, T:0.28
Consensus pattern (30 bp):
AAAAATAAAGAAACTAAATTTCAATGAAAT
Found at i:32672153 original size:19 final size:19
Alignment explanation
Indices: 32672121--32672161 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
32672111 AAAACGCATT
*
32672121 AAAATTTTTGAGGTTTATAA
1 AAAATATTTGAGGTTTA-AA
32672141 AAAATATTT-AGGTTTAAA
1 AAAATATTTGAGGTTTAAA
32672159 AAA
1 AAA
32672162 CACTAAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 5 0.25
19 7 0.35
20 8 0.40
ACGTcount: A:0.49, C:0.00, G:0.12, T:0.39
Consensus pattern (19 bp):
AAAATATTTGAGGTTTAAA
Found at i:32672175 original size:19 final size:19
Alignment explanation
Indices: 32672153--32672194 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
32672143 AATATTTAGG
*
32672153 TTTAA-AAAACACTAAAAAT
1 TTTAATAAAACA-GAAAAAT
*
32672172 TTTAATAAATCAGAAAAAT
1 TTTAATAAAACAGAAAAAT
32672191 TTTA
1 TTTA
32672195 GTATTAACTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 15 0.75
20 5 0.25
ACGTcount: A:0.57, C:0.07, G:0.02, T:0.33
Consensus pattern (19 bp):
TTTAATAAAACAGAAAAAT
Found at i:32673999 original size:15 final size:15
Alignment explanation
Indices: 32673979--32674010 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
32673969 CATTTCACTA
*
32673979 TTATGTCTTTTGTAT
1 TTATGTCTTTTATAT
32673994 TTATGTCTTTTATAT
1 TTATGTCTTTTATAT
32674009 TT
1 TT
32674011 TTCATGCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.06, G:0.09, T:0.69
Consensus pattern (15 bp):
TTATGTCTTTTATAT
Found at i:32675290 original size:19 final size:20
Alignment explanation
Indices: 32675260--32675297 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
32675250 TAAATTGAGC
*
32675260 CCAAGAACCCAAAATCAAGA
1 CCAAGAACCCAAAAACAAGA
32675280 CCAAG-ACCCAAAAACAAG
1 CCAAGAACCCAAAAACAAG
32675298 TTGATCAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.55, C:0.32, G:0.11, T:0.03
Consensus pattern (20 bp):
CCAAGAACCCAAAAACAAGA
Found at i:32677243 original size:50 final size:50
Alignment explanation
Indices: 32677119--32677400 Score: 232
Period size: 50 Copynumber: 5.6 Consensus size: 50
32677109 ATTATGAGAA
* * * *
32677119 CACATGTGTAGTACTATGTGCAGGCTACTATGTGT-TTAAGATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-AGATAG--TTAGGT
* * *
32677171 CACGTGTGTAGTAGC-AAATGCAGGCTATTACGTGTACTAGATAGTTAGGT
1 CACATGTGTAGTA-CTAAGTGCAGGCTACTACGTGTACTAGATAGTTAGGT
** * * * * * *
32677221 TGCATGTCTAGTACTAAGTGCAGGCTACTATGCGTACCCGAGA-ACTTCA-AT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA--CTAGATAGTT-AGGT
* * * * * *
32677272 CACGTGTGTAGTACTAAATGCAGGTTACTACGTGTATTACATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAGTTAGGT
** * * *
32677322 CATGTGTGTAGTACTAAGTGCATGCTACTACGTGTACCAGATTGTT-GGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAGTTAGGT
32677371 CACATGTGTAGTACTAAGTGCAGGCTACTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTA
32677401 TGCTTACCAG
Statistics
Matches: 179, Mismatches: 43, Indels: 19
0.74 0.18 0.08
Matches are distributed among these distances:
49 34 0.19
50 73 0.41
51 32 0.18
52 38 0.21
53 2 0.01
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAGTTAGGT
Found at i:32677304 original size:101 final size:100
Alignment explanation
Indices: 32677170--32677351 Score: 251
Period size: 101 Copynumber: 1.8 Consensus size: 100
32677160 TGGTTTTAGG
* *
32677170 TCACGTGTGTAGTAGCAAATGCAGGCTATTACGTGTACTAGATAGTTAGGTTGCA-TGTCTAGTA
1 TCACGTGTGTAGTAGCAAATGCAGGCTACTACGTGTACTACATAGTTAGG-T-CAGTGTCTAGTA
32677234 CTAAGTGCAGGCTACTATGCGTACCCGAGAACTTCAA
64 CTAAGTGCAGGCTACTATGCGTACCCGAGAACTTCAA
* * * *
32677271 TCACGTGTGTAGTA-CTAAATGCAGGTTACTACGTGTATTACATGGTTAGGTCATGTGTGTAGTA
1 TCACGTGTGTAGTAGC-AAATGCAGGCTACTACGTGTACTACATAGTTAGGTCA-GTGTCTAGTA
*
32677335 CTAAGTGCATGCTACTA
64 CTAAGTGCAGGCTACTA
32677352 CGTGTACCAG
Statistics
Matches: 71, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
99 2 0.03
100 2 0.03
101 67 0.94
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (100 bp):
TCACGTGTGTAGTAGCAAATGCAGGCTACTACGTGTACTACATAGTTAGGTCAGTGTCTAGTACT
AAGTGCAGGCTACTATGCGTACCCGAGAACTTCAA
Found at i:32682631 original size:48 final size:48
Alignment explanation
Indices: 32682572--32682664 Score: 159
Period size: 48 Copynumber: 1.9 Consensus size: 48
32682562 GGGTTATGTG
*
32682572 CGATCCTATGTAAGACCATGTCTGGGACACGACATTGGCATCGATCTA
1 CGATCCCATGTAAGACCATGTCTGGGACACGACATTGGCATCGATCTA
* *
32682620 CGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAT
1 CGATCCCATGTAAGACCATGTCTGGGACACGACATTGGCATCGAT
32682665 ATGTGATCCC
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (48 bp):
CGATCCCATGTAAGACCATGTCTGGGACACGACATTGGCATCGATCTA
Found at i:32682673 original size:48 final size:48
Alignment explanation
Indices: 32682572--32682676 Score: 156
Period size: 48 Copynumber: 2.2 Consensus size: 48
32682562 GGGTTATGTG
* *
32682572 CGATCCTATGTAAGACCATGTCTGGGACACGACATTGGCATCGATCTA
1 CGATCCCATGTAAGACCATGTCTGGGACACGACATTGGCATCGATATA
* * *
32682620 CGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
1 CGATCCCATGTAAGACCATGTCTGGGACACGACATTGGCATCGATATA
*
32682668 TGATCCCAT
1 CGATCCCAT
32682677 ATGGCATTGG
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 51 1.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (48 bp):
CGATCCCATGTAAGACCATGTCTGGGACACGACATTGGCATCGATATA
Found at i:32686669 original size:30 final size:30
Alignment explanation
Indices: 32686635--32686714 Score: 106
Period size: 30 Copynumber: 2.7 Consensus size: 30
32686625 AGCCAAAACT
*
32686635 ATCCATTTTCATAATTTGATGGTCGTCACC
1 ATCCATTTTCATAATTTGATGGTCATCACC
*** *
32686665 ATCCATTTTCATTGCTCGATGGTCATCACC
1 ATCCATTTTCATAATTTGATGGTCATCACC
*
32686695 ATCCCTTTTCATAATTTGAT
1 ATCCATTTTCATAATTTGAT
32686715 AGCCAAAGCT
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.23, C:0.25, G:0.11, T:0.41
Consensus pattern (30 bp):
ATCCATTTTCATAATTTGATGGTCATCACC
Found at i:32686802 original size:29 final size:30
Alignment explanation
Indices: 32686743--32686806 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 30
32686733 ACATAGATCG
* *
32686743 ATCCTTTTTCATAGTTCGATGGTTGTCACC
1 ATCCCTTTTCATAGTTCGATGGTCGTCACC
*
32686773 ATCCCTTTTCATTA-TT-GATGGTCGTTACC
1 ATCCCTTTTCA-TAGTTCGATGGTCGTCACC
32686802 ATCCC
1 ATCCC
32686807 ATTGCATAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
29 16 0.53
30 12 0.40
31 2 0.07
ACGTcount: A:0.17, C:0.27, G:0.14, T:0.42
Consensus pattern (30 bp):
ATCCCTTTTCATAGTTCGATGGTCGTCACC
Found at i:32686825 original size:29 final size:29
Alignment explanation
Indices: 32686770--32686825 Score: 67
Period size: 29 Copynumber: 1.9 Consensus size: 29
32686760 GATGGTTGTC
* * * * *
32686770 ACCATCCCTTTTCATTATTGATGGTCGTT
1 ACCATCCCATTGCATAATCGATAGTCGTT
32686799 ACCATCCCATTGCATAATCGATAGTCG
1 ACCATCCCATTGCATAATCGATAGTCG
32686826 AAGCTATCCC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 22 1.00
ACGTcount: A:0.23, C:0.27, G:0.14, T:0.36
Consensus pattern (29 bp):
ACCATCCCATTGCATAATCGATAGTCGTT
Found at i:32686834 original size:29 final size:29
Alignment explanation
Indices: 32686802--32686864 Score: 81
Period size: 29 Copynumber: 2.2 Consensus size: 29
32686792 GGTCGTTACC
*
32686802 ATCCCATTGCATAATCGATAGTCGAAGCT
1 ATCCCATTGCATAATCGATAGCCGAAGCT
* * * *
32686831 ATCCCTTTTCGTATTCGATAGCCGAAGCT
1 ATCCCATTGCATAATCGATAGCCGAAGCT
32686860 ATCCC
1 ATCCC
32686865 TTTTCATTTG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (29 bp):
ATCCCATTGCATAATCGATAGCCGAAGCT
Found at i:32694121 original size:47 final size:47
Alignment explanation
Indices: 32694050--32694454 Score: 666
Period size: 47 Copynumber: 8.6 Consensus size: 47
32694040 CCCTTCGGGA
* * * * * *
32694050 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
32694097 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32694144 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32694191 CTTATCACATATATACACTTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32694238 CTTATCACATATGTACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32694285 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32694332 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32694381 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32694428 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
32694455 TATTCAAATA
Statistics
Matches: 338, Mismatches: 18, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 293 0.87
49 45 0.13
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32694128 original size:25 final size:25
Alignment explanation
Indices: 32694100--32694178 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
32694090 ACTCGGCCCT
32694100 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * * *
32694125 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
32694147 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
32694172 ATCACAT
1 ATCACAT
32694179 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:32699969 original size:3 final size:3
Alignment explanation
Indices: 32699961--32700013 Score: 88
Period size: 3 Copynumber: 17.7 Consensus size: 3
32699951 ACTCTATTGT
* *
32699961 TTA TTA TTA TTA TTA TTA TTA TTA TCA TTA TTA TTA TTA ATA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
32700009 TTA TT
1 TTA TT
32700014 TTTGTAGCCT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:32702092 original size:43 final size:43
Alignment explanation
Indices: 32702045--32702130 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
32702035 CATAACATCA
*
32702045 CGTTTTCGCAACATTGTTGAAATGCTTCCGCAACAAACATGTT
1 CGTTTTCGCAACATTGTTCAAATGCTTCCGCAACAAACATGTT
32702088 CGTTTTCGCAACATTGTTCAAATGCTTCCGCAACAAACATGTT
1 CGTTTTCGCAACATTGTTCAAATGCTTCCGCAACAAACATGTT
32702131 TTTAAAAGTA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.33
Consensus pattern (43 bp):
CGTTTTCGCAACATTGTTCAAATGCTTCCGCAACAAACATGTT
Found at i:32702188 original size:34 final size:34
Alignment explanation
Indices: 32702140--32702207 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
32702130 TTTTAAAAGT
32702140 AAGGATGGTTTAAAATGGTTAACAAATAATTAAG
1 AAGGATGGTTTAAAATGGTTAACAAATAATTAAG
*
32702174 AAGGCTGGTTTAAAATGGTTAACAAATAATTAAG
1 AAGGATGGTTTAAAATGGTTAACAAATAATTAAG
32702208 TTGACTTTTG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.46, C:0.04, G:0.21, T:0.29
Consensus pattern (34 bp):
AAGGATGGTTTAAAATGGTTAACAAATAATTAAG
Found at i:32714898 original size:20 final size:20
Alignment explanation
Indices: 32714873--32714920 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
32714863 CTGTGGACAC
32714873 GGGCGTGTCCCAAGCCACAT
1 GGGCGTGTCCCAAGCCACAT
32714893 GGGCGTGTCCCAAGCCACAT
1 GGGCGTGTCCCAAGCCACAT
*
32714913 GGGTGTGT
1 GGGCGTGT
32714921 GACTCTCCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.17, C:0.29, G:0.35, T:0.19
Consensus pattern (20 bp):
GGGCGTGTCCCAAGCCACAT
Found at i:32715454 original size:26 final size:25
Alignment explanation
Indices: 32715412--32715472 Score: 77
Period size: 26 Copynumber: 2.4 Consensus size: 25
32715402 ATACATAAAT
* *
32715412 TATATTATATGCGTGGGTCTTACTA
1 TATAATATATGCATGGGTCTTACTA
* *
32715437 TGTACATATATGCATGGGTCTTATTA
1 TATA-ATATATGCATGGGTCTTACTA
32715463 TATAATATAT
1 TATAATATAT
32715473 ATAATTATGG
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
25 9 0.30
26 21 0.70
ACGTcount: A:0.30, C:0.10, G:0.16, T:0.44
Consensus pattern (25 bp):
TATAATATATGCATGGGTCTTACTA
Found at i:32715971 original size:83 final size:83
Alignment explanation
Indices: 32715831--32716006 Score: 334
Period size: 83 Copynumber: 2.1 Consensus size: 83
32715821 ACACCCTCGT
*
32715831 AACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTT
1 AACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCATCGATTTGTTCCTT
32715896 GTAAGCACAAGGATGCCA
66 GTAAGCACAAGGATGCCA
*
32715914 AACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCATTGATTTGTTCCTT
1 AACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCATCGATTTGTTCCTT
32715979 GTAAGCACAAGGATGCCA
66 GTAAGCACAAGGATGCCA
32715997 AACCATCTTG
1 AACCATCTTG
32716007 GATCTGCTTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
83 91 1.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (83 bp):
AACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCATCGATTTGTTCCTT
GTAAGCACAAGGATGCCA
Found at i:32716645 original size:119 final size:119
Alignment explanation
Indices: 32715930--32716642 Score: 1183
Period size: 119 Copynumber: 6.0 Consensus size: 119
32715920 CTTGAGTCTG
* * * * * * * * *
32715930 TTTGAGAACATTTGAGAGTCATATCTGCAATGTCATTGATTTGTTCCTTGTAAGCACAAGGATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
* *
32715995 CAAACCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTATATCTGCTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
* * * *
32716049 TTTGAGAATGTCTAAGAGTCAAATCTGCTATGTCCTTGATTTGTTTCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
* * *
32716114 CAAATCATCTTGGATCTGCTTTAGTATAAACATCTAAAGGTTAGATCTGTTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
32716168 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
*
32716233 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGTTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
*
32716287 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTTGATTTGTTCCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
32716352 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
* * *
32716406 TTTGAGAACGTCTGAGAGTCAAATCTGTTATGTCCTCGATTTGTTCCTTGTAAACAAAAGAATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
** *
32716471 CAAATCATCTTTAATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATC
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
*
32716525 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
32716590 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTAT
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTAT
32716643 CTTCAATCTG
Statistics
Matches: 559, Mismatches: 35, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
119 559 1.00
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (119 bp):
TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
Found at i:32716682 original size:44 final size:44
Alignment explanation
Indices: 32716634--32716813 Score: 168
Period size: 44 Copynumber: 4.1 Consensus size: 44
32716624 TGAAGGTTAG
*
32716634 ATCTGCTATCTTCAATCTGTTCCCTATAAACACAAAGATGCCAA
1 ATCTGCTATCTTCAATCTGTTCCCTATAAACACAAGGATGCCAA
* *
32716678 ATCTGCTATCTTCAA-CTTGTTCCCTATAAACACAGGGATGCCAT
1 ATCTGCTATCTTCAATC-TGTTCCCTATAAACACAAGGATGCCAA
* ** * * * * *
32716722 GT-TGAAATCTTCAATCTGCTTCGCTGTAAGCAC-AGGAATGTCAG
1 ATCTGCTATCTTCAATCTG-TTCCCTATAAACACAAGG-ATGCCAA
* * * * *
32716766 ATCTACTATCTTCGACCTGTTCCCTATAAACATAGGGATGCCAA
1 ATCTGCTATCTTCAATCTGTTCCCTATAAACACAAGGATGCCAA
32716810 ATCT
1 ATCT
32716814 TGTTTCTTTG
Statistics
Matches: 105, Mismatches: 25, Indels: 12
0.74 0.18 0.08
Matches are distributed among these distances:
43 15 0.14
44 77 0.73
45 13 0.12
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (44 bp):
ATCTGCTATCTTCAATCTGTTCCCTATAAACACAAGGATGCCAA
Found at i:32723989 original size:17 final size:18
Alignment explanation
Indices: 32723936--32724042 Score: 155
Period size: 17 Copynumber: 5.9 Consensus size: 18
32723926 AATCATATCT
*
32723936 TCTAAGATTGTATATCATA
1 TCTAAGATTG-CTATCATA
*
32723955 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
32723973 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
32723990 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
32724008 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
32724025 TCTAAGATTGCATATCAT
1 TCTAAGATTGC-TATCAT
32724043 TGAAGATTAT
Statistics
Matches: 80, Mismatches: 5, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
17 32 0.40
18 32 0.40
19 16 0.20
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.38
Consensus pattern (18 bp):
TCTAAGATTGCTATCATA
Found at i:32723994 original size:35 final size:35
Alignment explanation
Indices: 32723936--32724042 Score: 187
Period size: 35 Copynumber: 3.0 Consensus size: 35
32723926 AATCATATCT
32723936 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
32723973 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
32724008 TCTAAGATTGTATCATATCTAAGATTGCATATCAT
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCAT
32724043 TGAAGATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
35 54 0.78
36 5 0.07
37 10 0.14
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.38
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:32726703 original size:20 final size:19
Alignment explanation
Indices: 32726680--32726720 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
32726670 ATTTTTTGTT
* *
32726680 TTAGGTTAGGGATTTTTAGG
1 TTAGGTTAAGG-TTATTAGG
32726700 TTAGGTTAAGGTTATTAGG
1 TTAGGTTAAGGTTATTAGG
32726719 TT
1 TT
32726721 TGGGTTAGTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.22, C:0.00, G:0.32, T:0.46
Consensus pattern (19 bp):
TTAGGTTAAGGTTATTAGG
Found at i:32741968 original size:43 final size:43
Alignment explanation
Indices: 32741921--32742030 Score: 175
Period size: 43 Copynumber: 2.6 Consensus size: 43
32741911 GGCATTATGT
* *
32741921 CTGCTAGGCACGAAGGCCCAAATACATATCACCGGCACGAAGC
1 CTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGC
* * *
32741964 CTGCTAGGCATGAAGGCCTGAATACACATCACCGGCACTAAGC
1 CTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGC
32742007 CTGCTAGGCACGAAGGCCCGAATA
1 CTGCTAGGCACGAAGGCCCGAATA
32742031 TAATACCAGC
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.31, C:0.31, G:0.25, T:0.14
Consensus pattern (43 bp):
CTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGC
Found at i:32742071 original size:38 final size:38
Alignment explanation
Indices: 32742023--32742106 Score: 123
Period size: 38 Copynumber: 2.2 Consensus size: 38
32742013 GGCACGAAGG
* * *
32742023 CCCGAATATAATACCAGCACTAGGCCTACGGGATTTAT
1 CCCGAATATAATACCAGCACAAAGCCTACGGGATTTAA
* *
32742061 CCCGGATATAATACCAGCACAAAGCCTGCGGGATTTAA
1 CCCGAATATAATACCAGCACAAAGCCTACGGGATTTAA
32742099 CCCGAATA
1 CCCGAATA
32742107 CACATTAAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.20
Consensus pattern (38 bp):
CCCGAATATAATACCAGCACAAAGCCTACGGGATTTAA
Found at i:32743816 original size:104 final size:104
Alignment explanation
Indices: 32743636--32743902 Score: 455
Period size: 104 Copynumber: 2.6 Consensus size: 104
32743626 TTGTATATAA
** *
32743636 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
32743700 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
32743740 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
32743805 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
** *
32743844 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGCGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
32743903 ATAACGGTTA
Statistics
Matches: 154, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
104 153 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.21, G:0.31, T:0.30
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:32751227 original size:26 final size:26
Alignment explanation
Indices: 32751192--32751242 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
32751182 AATGTGAAAG
*
32751192 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
32751218 GGGGTTGCTAAGTGCTGATTCCCCG
1 GGGGTTGCTAAGTGCTGATTCCCCG
32751243 GTTCATTGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.12, C:0.24, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:32751293 original size:103 final size:104
Alignment explanation
Indices: 32751115--32751479 Score: 618
Period size: 102 Copynumber: 3.6 Consensus size: 104
32751105 TTGTATATAA
** *
32751115 AGGGGTTGCTGTGTGCTGATTCCCCGATTCA-TGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
32751178 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
32751217 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
32751282 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
32751321 AGGGGTTGCTAAGTGCTGATT-CCCG-TTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
32751384 TGAAA--TGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
32751421 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
32751480 ATAACGGTTA
Statistics
Matches: 252, Mismatches: 6, Indels: 10
0.94 0.02 0.04
Matches are distributed among these distances:
100 53 0.21
101 4 0.02
102 101 0.40
103 67 0.27
104 27 0.11
ACGTcount: A:0.19, C:0.20, G:0.30, T:0.30
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:32767356 original size:31 final size:32
Alignment explanation
Indices: 32767318--32767379 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
32767308 CTCGCTGCAA
* *
32767318 TCTGGTGGCTTCGCCAC-ATATATATATCTGT
1 TCTGGTGGCCTAGCCACAATATATATATCTGT
*
32767349 TCTGGTGGCCTAGCCACAATATCTATATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
32767380 GTGATGTGAC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 15 0.56
32 12 0.44
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.35
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:32767372 original size:71 final size:67
Alignment explanation
Indices: 32767232--32767372 Score: 176
Period size: 67 Copynumber: 2.0 Consensus size: 67
32767222 GAGGAAGCGC
* * * *
32767232 TCTGGCAGCCTCACTGCAATCTGGTGGCCTTGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAACCTCACTGCAATCTGGTGGCCTTGCCACATATATCTGTTCTGGTGACCTAGCCACAA
32767297 TA
66 TA
* *
32767299 TCTGGCAACCTCGCTGCAATCTGGTGG-CTTCGCCACATATATATATCTGTTCTGGTGGCCTAGC
1 TCTGGCAACCTCACTGCAATCTGGTGGCCTT-GCCAC----ATATATCTGTTCTGGTGACCTAGC
32767363 CACAATA
61 CACAATA
32767370 TCT
1 TCT
32767373 ATATCTGGTG
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
66 3 0.05
67 30 0.48
71 30 0.48
ACGTcount: A:0.20, C:0.28, G:0.21, T:0.31
Consensus pattern (67 bp):
TCTGGCAACCTCACTGCAATCTGGTGGCCTTGCCACATATATCTGTTCTGGTGACCTAGCCACAA
TA
Done.