Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 98 of 343
Found at i:32769179 original size:40 final size:40
Alignment explanation
Indices: 32769122--32769339 Score: 271
Period size: 40 Copynumber: 5.5 Consensus size: 40
32769112 TGGATGATAA
* * * * *
32769122 CCGGGCTAAGTCACGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-TAT
* * *
32769162 TCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
32769202 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
32769242 CCGGGCTACGTCCCGAAGGCATTCGTGCGAGTTCCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
32769282 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATAT
* *
32769322 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
32769340 TACGTGGCTT
Statistics
Matches: 160, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 15 0.09
40 145 0.91
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:32776961 original size:40 final size:40
Alignment explanation
Indices: 32776906--32777069 Score: 233
Period size: 40 Copynumber: 4.1 Consensus size: 40
32776896 TGGATGATAA
* *
32776906 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
32776946 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
32776986 CCTGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
32777026 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
32777066 CCGG
1 CCGG
32777070 TTAAATCTCG
Statistics
Matches: 115, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
39 3 0.03
40 112 0.97
ACGTcount: A:0.21, C:0.24, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:32785911 original size:44 final size:45
Alignment explanation
Indices: 32785861--32785948 Score: 124
Period size: 45 Copynumber: 2.0 Consensus size: 45
32785851 GTTTTAAACG
* *
32785861 TGGTCTTACTCGTACA-CATATATCAGAATCACATATCGATGCCA
1 TGGTCTTACTCGCACATCACATATCAGAATCACATATCGATGCCA
* **
32785905 TGGTCTTACTCGCACATCACATGTTGGAATCACATATCGATGCC
1 TGGTCTTACTCGCACATCACATATCAGAATCACATATCGATGCC
32785949 TCATATACAT
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
44 15 0.39
45 23 0.61
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (45 bp):
TGGTCTTACTCGCACATCACATATCAGAATCACATATCGATGCCA
Found at i:32791997 original size:76 final size:76
Alignment explanation
Indices: 32791871--32792021 Score: 257
Period size: 76 Copynumber: 2.0 Consensus size: 76
32791861 TTAAGTAAGT
*
32791871 TGTTTTAACAATAGAATTAATTTATGATAATCTAAACCCACATAAATAAAACCTTATCACCTATT
1 TGTTTTAACAACAGAATTAATTTATGATAATCTAAACCCACATAAATAAAACCTTATCACCTATT
32791936 GTCCAGGTTCG
66 GTCCAGGTTCG
* *
32791947 TGTTTTAACAACAGAATTAATTTATGATAATCTAAACTCACATAAATAAAACCTTATCACTTATT
1 TGTTTTAACAACAGAATTAATTTATGATAATCTAAACCCACATAAATAAAACCTTATCACCTATT
* *
32792012 TTCTAGGTTC
66 GTCCAGGTTC
32792022 ACCGATATCT
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
76 70 1.00
ACGTcount: A:0.38, C:0.17, G:0.08, T:0.36
Consensus pattern (76 bp):
TGTTTTAACAACAGAATTAATTTATGATAATCTAAACCCACATAAATAAAACCTTATCACCTATT
GTCCAGGTTCG
Found at i:32793559 original size:27 final size:27
Alignment explanation
Indices: 32793520--32793587 Score: 109
Period size: 27 Copynumber: 2.5 Consensus size: 27
32793510 TGATATTCTT
*
32793520 TTGGTGAACCCTCAGTTCGCCGATACA
1 TTGGTGAATCCTCAGTTCGCCGATACA
*
32793547 TTGGTGAATCCTCAGTTTGCCGATACA
1 TTGGTGAATCCTCAGTTCGCCGATACA
*
32793574 TTGGCGAATCCTCA
1 TTGGTGAATCCTCA
32793588 CTTGTGAGGC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.29
Consensus pattern (27 bp):
TTGGTGAATCCTCAGTTCGCCGATACA
Found at i:32795748 original size:60 final size:61
Alignment explanation
Indices: 32795654--32795785 Score: 230
Period size: 60 Copynumber: 2.2 Consensus size: 61
32795644 AATAAAAGAT
*
32795654 ACAAATTCAAATTCTGAGAATTAATGAAACCTAATTTCACTAAGATCAAACCTAGAGGAGA
1 ACAAATTCAAATTCTGAGAATTAATGAAACCTAATTTCACTAAGATCAAACCTAAAGGAGA
**
32795715 ACAAATT-AAATTCTGAGTTTTAATGAAACCTAATTTCACTAAGATCAAACCTAAAGGAGA
1 ACAAATTCAAATTCTGAGAATTAATGAAACCTAATTTCACTAAGATCAAACCTAAAGGAGA
32795775 ACAAATTCAAA
1 ACAAATTCAAA
32795786 AGCTTTAAAG
Statistics
Matches: 67, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
60 57 0.85
61 10 0.15
ACGTcount: A:0.47, C:0.16, G:0.11, T:0.26
Consensus pattern (61 bp):
ACAAATTCAAATTCTGAGAATTAATGAAACCTAATTTCACTAAGATCAAACCTAAAGGAGA
Found at i:32797493 original size:7 final size:7
Alignment explanation
Indices: 32797481--32797509 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
32797471 TAACAAGATG
32797481 AAAATAA
1 AAAATAA
32797488 AAAATAA
1 AAAATAA
32797495 AAAATAA
1 AAAATAA
32797502 AAAATAA
1 AAAATAA
32797509 A
1 A
32797510 CCTTGATCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (7 bp):
AAAATAA
Found at i:32797798 original size:43 final size:43
Alignment explanation
Indices: 32797743--32797827 Score: 152
Period size: 43 Copynumber: 2.0 Consensus size: 43
32797733 TGGATATCAC
*
32797743 ATATATAATAAGAATAATTACATATTATTTTTTACTATCATAT
1 ATATATAATAAGAATAATTACATATTAGTTTTTACTATCATAT
*
32797786 ATATATAGTAAGAATAATTACATATTAGTTTTTACTATCATA
1 ATATATAATAAGAATAATTACATATTAGTTTTTACTATCATA
32797828 AAAAGTTGGT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.44, C:0.07, G:0.05, T:0.45
Consensus pattern (43 bp):
ATATATAATAAGAATAATTACATATTAGTTTTTACTATCATAT
Found at i:32799407 original size:22 final size:21
Alignment explanation
Indices: 32799360--32799407 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
32799350 TTGATTTACC
** *
32799360 AATATTTTACATTAGTATTAA
1 AATATTTTACATTAAAATAAA
*
32799381 TATATTTTACAATTAAAATAAA
1 AATATTTTAC-ATTAAAATAAA
32799403 AATAT
1 AATAT
32799408 ATTATTACTA
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (21 bp):
AATATTTTACATTAAAATAAA
Found at i:32800873 original size:143 final size:143
Alignment explanation
Indices: 32800610--32800894 Score: 480
Period size: 143 Copynumber: 2.0 Consensus size: 143
32800600 GAGAGTTTGA
* *
32800610 GGGGGCCTTTAATATAGAAATTGGTGACCTAGCTCGTAAAAATGAAGCCTTGGAGGCCTTGGTGG
1 GGGGACCTTTAATATAGAAATTGGTGACCTAGCTCGTAAAAATGAAACCTTGGAGGCCTTGGTGG
* * *
32800675 AGGCCACACGTAATGAGATTATTGAGCTGAAGGTGAAACTCGCGAGACTTAAATCCATGGAAGGT
66 AAGCCACACGCAATGAGATTATTGAGCTGAAGGCGAAACTCGCGAGACTTAAATCCATGGAAGGT
32800740 ATGTGTGGTATCT
131 ATGTGTGGTATCT
*
32800753 GGGGACCTTTAATATAGCAATTGGTGACCTAGCTCGTAAAAATGAAACCTTGGAGGCCTTGGTGG
1 GGGGACCTTTAATATAGAAATTGGTGACCTAGCTCGTAAAAATGAAACCTTGGAGGCCTTGGTGG
* * * *
32800818 AAGCCATACGCAATGAGATTGTTGAGCTGAAGGCGAAGCTTGCGAGACTTAAATCCATGGAAGGT
66 AAGCCACACGCAATGAGATTATTGAGCTGAAGGCGAAACTCGCGAGACTTAAATCCATGGAAGGT
32800883 ATGTGTGGTATC
131 ATGTGTGGTATC
32800895 CCATACTTTT
Statistics
Matches: 132, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
143 132 1.00
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.26
Consensus pattern (143 bp):
GGGGACCTTTAATATAGAAATTGGTGACCTAGCTCGTAAAAATGAAACCTTGGAGGCCTTGGTGG
AAGCCACACGCAATGAGATTATTGAGCTGAAGGCGAAACTCGCGAGACTTAAATCCATGGAAGGT
ATGTGTGGTATCT
Found at i:32802743 original size:43 final size:42
Alignment explanation
Indices: 32802638--32802755 Score: 121
Period size: 43 Copynumber: 2.8 Consensus size: 42
32802628 AACTTGAGAT
* * * *
32802638 TTACATGTAATACCATGTCTGGGACATTGGCATCGTATATGA
1 TTACATGTAAGACCACGTCTGGGACAGTGGCATCATATATGA
* * * *
32802680 TTTCATGGAAGACC-CTGTCTGGGATAGTGGCATCAATATTTGA
1 TTACATGTAAGACCAC-GTCTGGGACAGTGGCATC-ATATATGA
* *
32802723 TTACATGTAAGACCACGTCTGGGGCATTGGCAT
1 TTACATGTAAGACCACGTCTGGGACAGTGGCAT
32802756 TGTACAAGCT
Statistics
Matches: 60, Mismatches: 13, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
42 27 0.45
43 32 0.53
44 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (42 bp):
TTACATGTAAGACCACGTCTGGGACAGTGGCATCATATATGA
Found at i:32808892 original size:44 final size:44
Alignment explanation
Indices: 32808834--32808921 Score: 133
Period size: 44 Copynumber: 2.0 Consensus size: 44
32808824 TCCGATATGT
*
32808834 GATTTAGTGCAAGACCATATCTGGGACATTGGCATTG-ATTTGA
1 GATTTAGTGCAAGACCATATCTGGGACATTGGCATCGTATTTGA
* *
32808877 GATTTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATTTGA
1 GATTTA-GTGCAAGACCATATCTGGGACATTGGCATCGTATTTGA
32808922 TGTAACACCT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
43 6 0.15
44 28 0.70
45 6 0.15
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (44 bp):
GATTTAGTGCAAGACCATATCTGGGACATTGGCATCGTATTTGA
Found at i:32810962 original size:14 final size:14
Alignment explanation
Indices: 32810938--32810970 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
32810928 CCCCTGCTTC
32810938 GTTTCTGTTTCTTTT
1 GTTTCTGTTTC-TTT
32810953 GTTT-TGTTTCTTT
1 GTTTCTGTTTCTTT
32810966 GTTTC
1 GTTTC
32810971 CTTAATTCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 7 0.41
14 6 0.35
15 4 0.24
ACGTcount: A:0.00, C:0.12, G:0.15, T:0.73
Consensus pattern (14 bp):
GTTTCTGTTTCTTT
Found at i:32811363 original size:21 final size:21
Alignment explanation
Indices: 32811299--32811367 Score: 72
Period size: 21 Copynumber: 3.4 Consensus size: 21
32811289 AATAATGCTA
*
32811299 ATAATAATCTAATATAAAACC
1 ATAATAATTTAATATAAAACC
* **
32811320 ATAAT--GTTAAT-TAATAATT
1 ATAATAATTTAATATAA-AACC
32811339 ATAATAATTTAATATAAAACC
1 ATAATAATTTAATATAAAACC
32811360 ATAATAAT
1 ATAATAAT
32811368 AATCATTATA
Statistics
Matches: 37, Mismatches: 7, Indels: 8
0.71 0.13 0.15
Matches are distributed among these distances:
18 3 0.08
19 11 0.30
21 20 0.54
22 3 0.08
ACGTcount: A:0.55, C:0.07, G:0.01, T:0.36
Consensus pattern (21 bp):
ATAATAATTTAATATAAAACC
Found at i:32824351 original size:19 final size:19
Alignment explanation
Indices: 32824329--32824367 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
32824319 ACGAACTTAC
32824329 TAAGCTGTAAAGATTACTT
1 TAAGCTGTAAAGATTACTT
*
32824348 TAAGCTGTAAAGCTTACTT
1 TAAGCTGTAAAGATTACTT
32824367 T
1 T
32824368 GTGTTATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.38
Consensus pattern (19 bp):
TAAGCTGTAAAGATTACTT
Found at i:32825359 original size:30 final size:30
Alignment explanation
Indices: 32825303--32825359 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
32825293 TGGGCTCAAA
* **
32825303 TCAAGAAAATCAAGATTCACTTTCTTGTTT
1 TCAAGAAAATCAAGAATCACAATCTTGTTT
32825333 TCAAGAAAATCAAGAAATCA-AATCTTG
1 TCAAGAAAATCAAG-AATCACAATCTTG
32825360 GCCCAATTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
30 19 0.83
31 4 0.17
ACGTcount: A:0.42, C:0.16, G:0.11, T:0.32
Consensus pattern (30 bp):
TCAAGAAAATCAAGAATCACAATCTTGTTT
Found at i:32828064 original size:18 final size:17
Alignment explanation
Indices: 32828041--32828144 Score: 52
Period size: 18 Copynumber: 5.8 Consensus size: 17
32828031 AACAAGTGAG
32828041 GAAAAAGAAAAAGAGAAT
1 GAAAAAGAAAAAGA-AAT
*
32828059 GAAAAAGAGCAAAAAGAGATT
1 G-AAAA-AG-AAAAAGA-AAT
* **
32828080 GAGAGTGAAAAAGAAATT
1 GAAAAAGAAAAAGAAA-T
*
32828098 GAAGAAAG-AAGAGAAAAT
1 GAA-AAAGAAAAAG-AAAT
**
32828116 GAATTAGAAAAAGAAAT
1 GAAAAAGAAAAAGAAAT
32828133 --AAAAGAAAAAGA
1 GAAAAAGAAAAAGA
32828145 CGTGGAAAGG
Statistics
Matches: 65, Mismatches: 14, Indels: 17
0.68 0.15 0.18
Matches are distributed among these distances:
15 10 0.15
17 7 0.11
18 23 0.35
19 10 0.15
20 4 0.06
21 11 0.17
ACGTcount: A:0.66, C:0.01, G:0.23, T:0.10
Consensus pattern (17 bp):
GAAAAAGAAAAAGAAAT
Found at i:32830523 original size:43 final size:43
Alignment explanation
Indices: 32830462--32830557 Score: 158
Period size: 43 Copynumber: 2.2 Consensus size: 43
32830452 CAACCCTATA
*
32830462 TCACACGGGCGTGTCTACTA-CCTGTGTGAGGCACACAGTCTGT
1 TCACACGGGCATGTCTACTAGCC-GTGTGAGGCACACAGTCTGT
*
32830505 TCACACGGGCATGTCTACTAGCCGTGTGAGGCACACGGTCTGT
1 TCACACGGGCATGTCTACTAGCCGTGTGAGGCACACAGTCTGT
32830548 TCACACGGGC
1 TCACACGGGC
32830558 TGAGACCTTT
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
43 48 0.96
44 2 0.04
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (43 bp):
TCACACGGGCATGTCTACTAGCCGTGTGAGGCACACAGTCTGT
Found at i:32840670 original size:39 final size:40
Alignment explanation
Indices: 32840557--32840686 Score: 165
Period size: 39 Copynumber: 3.3 Consensus size: 40
32840547 GCAACTCGTT
* * * **
32840557 CAAATGCCTTCGGGACATAGCCCGTTA-TAGTAACTCGCA
1 CAAATGCCTTCGAGACTTAACCCGGAATTAGTAACTCGCA
* *
32840596 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGAGACTTAACCCGGAATTAGTAACTCGCA
* *
32840636 CCAATGCCTTCGAG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGAGACTTAACCCGGAATTAGTAACTCGCA
32840675 CAAATGCCTTCG
1 CAAATGCCTTCG
32840687 GATCTTAGTT
Statistics
Matches: 80, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
39 56 0.70
40 24 0.30
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGAGACTTAACCCGGAATTAGTAACTCGCA
Found at i:32840724 original size:79 final size:80
Alignment explanation
Indices: 32840557--32840740 Score: 196
Period size: 79 Copynumber: 2.3 Consensus size: 80
32840547 GCAACTCGTT
* * ** *
32840557 CAAATGCCTTCGGGACATAGCCCGTTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAA-GCCTTCGAGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
* *
32840621 ATTTAGTAACTCGCAC
65 ATATAGTAACTAGCAC
* ***
32840637 CAATGCCTTCGAG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTTCAG
1 CAAAGCCTTCGAGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCAG
*
32840700 ATATAGTCACTTAGCA-
65 ATATAGTAAC-TAGCAC
*
32840716 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGAGACTTAGCCCGGA
32840741 CATCATTTGA
Statistics
Matches: 86, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
78 12 0.14
79 56 0.65
80 18 0.21
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCGAGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAGA
TATAGTAACTAGCAC
Found at i:32845015 original size:46 final size:46
Alignment explanation
Indices: 32844965--32845133 Score: 164
Period size: 46 Copynumber: 3.7 Consensus size: 46
32844955 TGAGCATCTA
* * *
32844965 AACTCGTAGAGTTGAGTCCAAGTTCACTTATGGATGCAAATGTTCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTTCG
* * * * *
32845011 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CGTTCG
* * * *
32845058 AACTCGTTGAGTTGAGTCTGAGTTCATTTATGGATGCGAACGCTCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTTCG
*
32845104 AGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTA
32845134 GGGGCGGGTT
Statistics
Matches: 97, Mismatches: 19, Indels: 14
0.75 0.15 0.11
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 53 0.55
47 27 0.28
48 3 0.03
50 5 0.05
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTTCG
Found at i:32856572 original size:48 final size:48
Alignment explanation
Indices: 32856412--32856580 Score: 179
Period size: 48 Copynumber: 3.6 Consensus size: 48
32856402 TGATATGTGT
*
32856412 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCAT--AGCAT-G--AGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-TCGAG-ATAGTCA-A
* *
32856458 GCAAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAGTTAA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAGTCAA
* * * *
32856506 GCCAATGTATGACATGTCTGAGACATGCATCGGCCTCGCGATA-TACAA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAGT-CAA
* *
32856554 GCTAGTGTAAGACCTGTCTGGGACATG
1 GCCAGTGTAAGACATGTCTGGGACATG
32856581 GAATCAGCTT
Statistics
Matches: 104, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
45 1 0.01
46 35 0.34
47 4 0.04
48 63 0.61
49 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.22
Consensus pattern (48 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAGTCAA
Found at i:32858504 original size:40 final size:40
Alignment explanation
Indices: 32858467--32858544 Score: 113
Period size: 40 Copynumber: 2.0 Consensus size: 40
32858457 ATGTTTGATG
32858467 ACAAATT-GGCTAAATATGGCACTTAGTGTGCGGTTTGAC
1 ACAAATTCGGCTAAATATGGCACTTAGTGTGCGGTTTGAC
* ** *
32858506 ATAGCTTCGGCTAAATATGGCACTTAGTGTGCGATTTGA
1 ACAAATTCGGCTAAATATGGCACTTAGTGTGCGGTTTGA
32858545 GATAGTTTCG
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.32
Consensus pattern (40 bp):
ACAAATTCGGCTAAATATGGCACTTAGTGTGCGGTTTGAC
Found at i:32858570 original size:40 final size:40
Alignment explanation
Indices: 32858476--32858577 Score: 114
Period size: 40 Copynumber: 2.5 Consensus size: 40
32858466 GACAAATTGG
* * * *
32858476 CTAAATATGGCACTTAGTGTGCGGTTTGACATAGCTTCGG
1 CTAAATACGACACTTAGTGTGCGATTTGACATAGCTTCGA
* * * *
32858516 CTAAATATGGCACTTAGTGTGCGATTTGAGATAGTTTCGA
1 CTAAATACGACACTTAGTGTGCGATTTGACATAGCTTCGA
**
32858556 CTATGTACGACACTTAGTGTGC
1 CTAAATACGACACTTAGTGTGC
32858578 AAGACATCGA
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 54 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (40 bp):
CTAAATACGACACTTAGTGTGCGATTTGACATAGCTTCGA
Found at i:32858604 original size:28 final size:28
Alignment explanation
Indices: 32858564--32858631 Score: 84
Period size: 28 Copynumber: 2.4 Consensus size: 28
32858554 GACTATGTAC
*
32858564 GACACTTAGTGTGC-AAGACATCGAGTAT
1 GACACTTAGTGTGCGAA-ACATCGAGAAT
*
32858592 GACACTTAGTGTGCGAAACATTGAGAAT
1 GACACTTAGTGTGCGAAACATCGAGAAT
**
32858620 GGTACTTAGTGT
1 GACACTTAGTGT
32858632 CTGAGATATT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 33 0.94
29 2 0.06
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (28 bp):
GACACTTAGTGTGCGAAACATCGAGAAT
Found at i:32861080 original size:37 final size:37
Alignment explanation
Indices: 32861032--32861128 Score: 104
Period size: 37 Copynumber: 2.6 Consensus size: 37
32861022 TGAGTACGTA
*
32861032 TAAGACTATAGCTGGGCTATGGCATCATAATAACATG
1 TAAGACCATAGCTGGGCTATGGCATCATAATAACATG
* * ** * **
32861069 TAAGACCATAGCTGGACTATCGCATTGTGATCCCATG
1 TAAGACCATAGCTGGGCTATGGCATCATAATAACATG
* *
32861106 TAAGACCATATCTGGGATATGGC
1 TAAGACCATAGCTGGGCTATGGC
32861129 GTTGGCATCG
Statistics
Matches: 48, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.27
Consensus pattern (37 bp):
TAAGACCATAGCTGGGCTATGGCATCATAATAACATG
Found at i:32861218 original size:48 final size:48
Alignment explanation
Indices: 32861094--32861210 Score: 198
Period size: 48 Copynumber: 2.4 Consensus size: 48
32861084 ACTATCGCAT
*
32861094 TGTGATCCCATGTAAGACCATATCTGGGATATGGCGTTGGCATCGATA
1 TGTGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATA
32861142 TGTGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATA
** *
32861190 TGTGATTTCGTGTAAGACCAT
1 TGTGATCCCATGTAAGACCAT
32861211 GTTTGGGACA
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 65 1.00
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.31
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATA
Found at i:32865705 original size:40 final size:40
Alignment explanation
Indices: 32865624--32865727 Score: 111
Period size: 40 Copynumber: 2.6 Consensus size: 40
32865614 ACGATTAATT
**
32865624 GGCTAAATATGGCACTTAGTGTGCGGTTCGACATAGCTTC
1 GGCTAAATATGGCACTTAGTGTGCAATTCGACATAGCTTC
* * *
32865664 GGCTAAATATGGCACTTAGTGTTCAAATT-GAGATAGTTTC
1 GGCTAAATATGGCACTTAGTGTGC-AATTCGACATAGCTTC
** * *
32865704 GGCTATGTACGACACTTAGTGTGC
1 GGCTAAATATGGCACTTAGTGTGC
32865728 GAGACATCGA
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
40 51 0.96
41 2 0.04
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (40 bp):
GGCTAAATATGGCACTTAGTGTGCAATTCGACATAGCTTC
Found at i:32865781 original size:28 final size:29
Alignment explanation
Indices: 32865719--32865782 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 29
32865709 TGTACGACAC
* * *
32865719 TTAGTGTGCGAGACATCGAGTATGTCACT
1 TTAGTGTGCGAAACATCGAGAATGGCACT
*
32865748 TT-GTGTGCGAAACATTGAGAATGGCA-T
1 TTAGTGTGCGAAACATCGAGAATGGCACT
32865775 TTAGTGTG
1 TTAGTGTG
32865783 TGAGATATTG
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
27 3 0.10
28 25 0.83
29 2 0.07
ACGTcount: A:0.25, C:0.12, G:0.30, T:0.33
Consensus pattern (29 bp):
TTAGTGTGCGAAACATCGAGAATGGCACT
Found at i:32868008 original size:100 final size:98
Alignment explanation
Indices: 32867879--32868109 Score: 250
Period size: 100 Copynumber: 2.3 Consensus size: 98
32867869 CAGATGTGTC
* * ** *
32867879 AGTGTAAGACCACGTCTGGGAAATGGCATC-AGCAC-AGATGGACGAGAGTCAGTGTAAGACCAT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGA-C-CTAGATACACGAGAGTCAGTCTAAGACCAT
* * *
32867942 GTTTGAGACATGGCATCGGCCTCGACATACGAGAGCT
64 GTCTGAGACATGACATCGACCTCG--ATACGAGAGCT
* * * * *
32867979 AGTGTAAGACCATGTATGGGACATGGCATCGACCTTGATACATGATAGTCAGTCTAAGGCCATGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCTAGATACACGAGAGTCAGTCTAAGACCATGT
* * * * *
32868044 CTGGGACATGACATTGACTTTGATACGTGAGCT
66 CTGAGACATGACATCGACCTCGATACGAGAGCT
32868077 AGTGTAAGACCATGTCTGGGACATGGCATCGAC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAC
32868110 TTCCTACCCT
Statistics
Matches: 110, Mismatches: 19, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
98 42 0.38
99 1 0.01
100 66 0.60
101 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (98 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACCTAGATACACGAGAGTCAGTCTAAGACCATGT
CTGAGACATGACATCGACCTCGATACGAGAGCT
Found at i:32868101 original size:48 final size:48
Alignment explanation
Indices: 32867828--32868111 Score: 202
Period size: 50 Copynumber: 5.8 Consensus size: 48
32867818 CTATAGATGA
* * * * * * * *
32867828 GAGCCAGTGTAAGACCATCTCTGGGACATGACATCAACTATCAGATGT
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACTTTGATACGT
* * * * *
32867876 G-TC-AGTGTAAGACCACGTCTGGGAAATGGCATCAGCAC--AGATGGACGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-G-ACTTTGAT--ACGT
* * * * * *
32867924 GAG-TCAGTGTAAGACCATGTTTGAGACATGGCATCGGCCTCGACATACGA
1 GAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGACTTTG--ATACGT
* * *
32867974 GAGCTAGTGTAAGACCATGTATGGGACATGGCATCGACCTTGATACAT
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACTTTGATACGT
* * * *
32868022 GATAG-TCAGTCTAAGGCCATGTCTGGGACATGACATTGACTTTGATACGT
1 G--AGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGACTTTGATACGT
32868072 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACTT
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACTT
32868112 CCTACCCTAC
Statistics
Matches: 185, Mismatches: 35, Indels: 32
0.73 0.14 0.13
Matches are distributed among these distances:
46 27 0.15
47 1 0.01
48 45 0.24
49 3 0.02
50 106 0.57
51 1 0.01
52 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (48 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACTTTGATACGT
Found at i:32875630 original size:13 final size:13
Alignment explanation
Indices: 32875612--32875636 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32875602 TGTTGGTGCC
32875612 CACGACCGTGTCG
1 CACGACCGTGTCG
32875625 CACGACCGTGTC
1 CACGACCGTGTC
32875637 CTACTTTGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.40, G:0.28, T:0.16
Consensus pattern (13 bp):
CACGACCGTGTCG
Found at i:32884637 original size:50 final size:49
Alignment explanation
Indices: 32884574--32884903 Score: 248
Period size: 50 Copynumber: 6.7 Consensus size: 49
32884564 TGATGTGATT
* * **
32884574 GCTAGTGTAAGACCATGTCCGGGATATGGCATCAGCACCGATAGATTAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGC-CCGATAGACGAGA
* * * *
32884624 GCTAGTGTAAGACCGTGTTTGGGACATGGCATCAG--CTAT-GA-GATGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCCGATAGACGA-GA
* * * * *
32884670 G-TCGGTGTAAGACCATGTCTTGGACATGGCATTAGCACAGATGGACGAGA
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCAGC-CCGATAGACGAGA
* *
32884720 G-TCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGACATACGAGA
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCAGCC-CGATAGACGAGA
* ** * * * * * *
32884770 GCTAGTTTAAGACCATGTCTGGGACATGGTGTCTGGCTCAATACATGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-AGCCCGATAGACGAGA
** *
32884820 G-TCAGTGTAAGACCATGTCTGGGACATGGCATC-GACTTTGAT--ACGTGA
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCAG-C-CCGATAGACGAGA
*
32884868 GCTAGTGTAAGACCATGTCTGGGACACGGCATCAGC
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGC
32884904 TTCCTACCCT
Statistics
Matches: 224, Mismatches: 41, Indels: 32
0.75 0.14 0.11
Matches are distributed among these distances:
45 2 0.01
46 31 0.14
47 3 0.01
48 35 0.16
49 7 0.03
50 141 0.63
51 5 0.02
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (49 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCCGATAGACGAGA
Found at i:32884695 original size:46 final size:48
Alignment explanation
Indices: 32884529--32884903 Score: 155
Period size: 50 Copynumber: 7.7 Consensus size: 48
32884519 CAAGATAGTT
* * * * * * *
32884529 AGTGTAAGAACATGTCTAGGACATGGCATCGGC--ATTGATGTGATTGC
1 AGTGTAAGACCATGTCTTGGACATGGCATCAGCAGATGGACGAGAGT-C
** * * **
32884576 TAGTGTAAGACCATGTCCGGGATATGGCATCAGCACCGATAGATTAGAG-C
1 -AGTGTAAGACCATGTCTTGGACATGGCATCAGCA--GATGGACGAGAGTC
* * *
32884626 TAGTGTAAGACCGTGT-TTGGGACATGGCATCAGC-TAT-GA-GATGTGTC
1 -AGTGTAAGACCATGTCTT-GGACATGGCATCAGCAGATGGACGA-GAGTC
* *
32884673 GGTGTAAGACCATGTCTTGGACATGGCATTAGCACAGATGGACGAGAGTC
1 AGTGTAAGACCATGTCTTGGACATGGCATCAG--CAGATGGACGAGAGTC
* * ***
32884723 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGACATACGAGAG-C
1 AGTGTAAGACCATGTCTTGGACATGGCATCAG-C-AGATGGACGAGAGTC
* * ** * ** * *
32884772 TAGTTTAAGACCATGTCTGGGACATGGTGTCTGGCTCA-ATACATGATAGTC
1 -AGTGTAAGACCATGTCTTGGACATGGCATC-AG--CAGATGGACGAGAGTC
* * *
32884823 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTTTGAT--ACGTGAG-C
1 AGTGTAAGACCATGTCTTGGACATGGCATCAG-C--AGATGGACGAGAGTC
* *
32884870 TAGTGTAAGACCATGTCTGGGACACGGCATCAGC
1 -AGTGTAAGACCATGTCTTGGACATGGCATCAGC
32884904 TTCCTACCCT
Statistics
Matches: 256, Mismatches: 48, Indels: 46
0.73 0.14 0.13
Matches are distributed among these distances:
45 1 0.00
46 30 0.12
47 7 0.03
48 64 0.25
49 5 0.02
50 137 0.54
51 4 0.02
52 8 0.03
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTTGGACATGGCATCAGCAGATGGACGAGAGTC
Found at i:32884701 original size:96 final size:96
Alignment explanation
Indices: 32884529--32884903 Score: 258
Period size: 96 Copynumber: 3.8 Consensus size: 96
32884519 CAAGATAGTT
* * * * *
32884529 AGTGTAAGAACATGTCTAGGACATGGCATCGGC-AT-TGATGTGATTGCTAGTGTAAGACCATGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCTATGAGATGTG--T-C-GGTGTAAGACCATGT
* * **
32884592 CCGGGATATGGCATCAGCACCGATAGATTAGAG-C
62 CCGGGACATGGCATCAGCACAGATAGACGAGAGTC
* * **
32884626 TAGTGTAAGACCGTGTTTGGGACATGGCATCAGCTATGAGATGTGTCGGTGTAAGACCATGTCTT
1 -AGTGTAAGACCATGTCTGGGACATGGCATCAGCTATGAGATGTGTCGGTGTAAGACCATGTCCG
* *
32884691 GGACATGGCATTAGCACAGATGGACGAGAGTC
65 GGACATGGCATCAGCACAGATAGACGAGAGTC
* * * * * *
32884723 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCT-CGACATACGAGAGCTAGTTTAAGACCATG
1 AGTGTAAGACCATGTCTGGGACATGGCATCAG-CTATGAGAT--GTG-TC-GGTGTAAGACCATG
* ** * * * * *
32884787 TCTGGGACATGGTGTCTGGCTCA-ATACATGATAGTC
61 TCCGGGACATGGCATC-AGCACAGATAGACGAGAGTC
* * * * *
32884823 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTTTGATACGTGAGCTAGTGTAAGACCATGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAG-CTATGAGATGTG-TC-GGTGTAAGACCATGTC
* *
32884887 TGGGACACGGCATCAGC
63 CGGGACATGGCATCAGC
32884904 TTCCTACCCT
Statistics
Matches: 224, Mismatches: 43, Indels: 21
0.78 0.15 0.07
Matches are distributed among these distances:
96 73 0.33
97 6 0.03
98 63 0.28
99 6 0.03
100 72 0.32
101 4 0.02
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (96 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCTATGAGATGTGTCGGTGTAAGACCATGTCCGG
GACATGGCATCAGCACAGATAGACGAGAGTC
Found at i:32884754 original size:146 final size:146
Alignment explanation
Indices: 32884516--32884903 Score: 367
Period size: 146 Copynumber: 2.6 Consensus size: 146
32884506 GTCGGCCTTG
* * * * * * * ** **
32884516 ATACAAGATAGTTAGTGTAAGAACATGTCTAGGACATGGCATCGGCATTGATGTGATTGCTAGTG
1 ATACATGATAGTCAGTGTAAGACCATGTCTGGGACATGGCATAGAC-TAGATACGAGAGCTAGTG
* * * ** * *
32884581 TAAGACCATGTCCGGGATATGGCATCAGCAC-CGATAGATTAGAGCTAGTGTAAGACCGTGTTTG
65 TAAGACCATGTCTGGGACATGGCATCAGC-CTCGACAGACGAGAGCTAGTGTAAGACCATGTCTG
32884645 GGACATGGCATC-AGCT-
129 GGACATGGCATCTAGCTA
* * *
32884661 ATGAGATG-T-GTCGGTGTAAGACCATGTCTTGGACATGGCATTAGCAC-AGATGGACGAGAG-T
1 AT-ACATGATAGTCAGTGTAAGACCATGTCTGGGACATGGCA-TAG-ACTAGAT--ACGAGAGCT
* *
32884722 CAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGACATACGAGAGCTAGTTTAAGACCATG
61 -AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGACAGACGAGAGCTAGTGTAAGACCATG
** *
32884787 TCTGGGACATGGTGTCTGGCTCA
125 TCTGGGACATGGCATCTAGCT-A
* * *
32884810 ATACATGATAGTCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTTGATACGTGAGCTAGTG
1 ATACATGATAGTCAGTGTAAGACCATGTCTGGGACATGGCATAGAC-TAGATACGAGAGCTAGTG
*
32884875 TAAGACCATGTCTGGGACACGGCATCAGC
65 TAAGACCATGTCTGGGACATGGCATCAGC
32884904 TTCCTACCCT
Statistics
Matches: 196, Mismatches: 32, Indels: 27
0.77 0.13 0.11
Matches are distributed among these distances:
144 30 0.15
145 7 0.04
146 74 0.38
147 3 0.02
148 44 0.22
149 6 0.03
150 32 0.16
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.25
Consensus pattern (146 bp):
ATACATGATAGTCAGTGTAAGACCATGTCTGGGACATGGCATAGACTAGATACGAGAGCTAGTGT
AAGACCATGTCTGGGACATGGCATCAGCCTCGACAGACGAGAGCTAGTGTAAGACCATGTCTGGG
ACATGGCATCTAGCTA
Found at i:32890733 original size:30 final size:30
Alignment explanation
Indices: 32890699--32890760 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
32890689 TAATGTAAGC
*
32890699 AGCTAAAAAATTCGCGATATCTGCAAACCA
1 AGCTAAAAAATTCACGATATCTGCAAACCA
*
32890729 AGCTAAAAAATTCACGATGTCTGCAAACCA
1 AGCTAAAAAATTCACGATATCTGCAAACCA
32890759 AG
1 AG
32890761 GTACCTCGGA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.44, C:0.23, G:0.15, T:0.19
Consensus pattern (30 bp):
AGCTAAAAAATTCACGATATCTGCAAACCA
Found at i:32898286 original size:15 final size:15
Alignment explanation
Indices: 32898267--32898309 Score: 52
Period size: 17 Copynumber: 2.7 Consensus size: 15
32898257 TCCAAGACAG
32898267 AGAAATCCAAGATATT
1 AGAAATCCAAGAT-TT
32898283 -GAAACTTCCAAGATTT
1 AGAAA--TCCAAGATTT
32898299 AGAAATCCAAG
1 AGAAATCCAAG
32898310 TTACAATACC
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
15 10 0.42
16 2 0.08
17 12 0.50
ACGTcount: A:0.47, C:0.16, G:0.14, T:0.23
Consensus pattern (15 bp):
AGAAATCCAAGATTT
Found at i:32898562 original size:91 final size:91
Alignment explanation
Indices: 32898407--32898584 Score: 304
Period size: 91 Copynumber: 2.0 Consensus size: 91
32898397 AGAATACATC
*
32898407 ATTCAAACCCACTGAGAATAGATAAGAAAATGACAATATACTTCCCATATATGTATATATATCAG
1 ATTCAAACCCACTGAGAATAGATAAGAAAAGGACAATATACTTCCCATATATGTATATATATCAG
*
32898472 GCAGAGCAATAATTAGAAGAAACAGG
66 ACAGAGCAATAATTAGAAGAAACAGG
* *
32898498 ATTCAAACCCACTGGGAATAGATACA-ACAAGGACAATATACTTCCCATATATGTATATATATCA
1 ATTCAAACCCACTGAGAATAGATA-AGAAAAGGACAATATACTTCCCATATATGTATATATATCA
32898562 GACAGAGCAATAATTAGAAGAAA
65 GACAGAGCAATAATTAGAAGAAA
32898585 TAGAATCATA
Statistics
Matches: 82, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
91 81 0.99
92 1 0.01
ACGTcount: A:0.46, C:0.16, G:0.15, T:0.23
Consensus pattern (91 bp):
ATTCAAACCCACTGAGAATAGATAAGAAAAGGACAATATACTTCCCATATATGTATATATATCAG
ACAGAGCAATAATTAGAAGAAACAGG
Found at i:32900391 original size:19 final size:20
Alignment explanation
Indices: 32900359--32900396 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
32900349 ATTGCATTTT
32900359 AATTTTATTTTTCTTTACTG
1 AATTTTATTTTTCTTTACTG
32900379 AATTTTA-TTTTCTTTACT
1 AATTTTATTTTTCTTTACT
32900397 TCTGACAGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.21, C:0.11, G:0.03, T:0.66
Consensus pattern (20 bp):
AATTTTATTTTTCTTTACTG
Found at i:32905447 original size:27 final size:27
Alignment explanation
Indices: 32905417--32905475 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
32905407 GAGTCCACTT
32905417 ATTTTACTTTTATCTTTATCT-TTATTA
1 ATTTTACTTTTAT-TTTATCTCTTATTA
* * * *
32905444 ATTTCAGTTTTATTTTGTCTCTTATTT
1 ATTTTACTTTTATTTTATCTCTTATTA
32905471 ATTTT
1 ATTTT
32905476 TGAAGATTTA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
26 6 0.23
27 20 0.77
ACGTcount: A:0.19, C:0.10, G:0.03, T:0.68
Consensus pattern (27 bp):
ATTTTACTTTTATTTTATCTCTTATTA
Found at i:32921795 original size:29 final size:29
Alignment explanation
Indices: 32921709--32921831 Score: 111
Period size: 29 Copynumber: 4.2 Consensus size: 29
32921699 AAAGGAAGTA
* * *
32921709 TTTATGGTGATCTCTACTATAAGAAATCC
1 TTTATGGTGATCTCTATTATAAAAAAGCC
* * * * * *
32921738 TTTGTCGTGATCTTTGTTATAAGAGAGCC
1 TTTATGGTGATCTCTATTATAAAAAAGCC
* *
32921767 ATTATGGTGATCTGTATTATAAAAAAGCC
1 TTTATGGTGATCTCTATTATAAAAAAGCC
* ** *
32921796 TTTGTGGCAAACTCTATTATAAAAAAGCC
1 TTTATGGTGATCTCTATTATAAAAAAGCC
32921825 TTTATGG
1 TTTATGG
32921832 CGAAATTTGT
Statistics
Matches: 73, Mismatches: 21, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
29 73 1.00
ACGTcount: A:0.31, C:0.14, G:0.18, T:0.37
Consensus pattern (29 bp):
TTTATGGTGATCTCTATTATAAAAAAGCC
Found at i:32921869 original size:29 final size:29
Alignment explanation
Indices: 32921837--32922021 Score: 144
Period size: 29 Copynumber: 6.4 Consensus size: 29
32921827 TATGGCGAAA
* * *
32921837 TTTGTTATAAGGAATCA-TTTTTGGCTATG
1 TTTGTTA-AAAGAATCACTTTGTGGCTATC
*
32921866 TTTGTTAAAAGAATGACTTTGTGGCTATC
1 TTTGTTAAAAGAATCACTTTGTGGCTATC
32921895 TTTGTTAAAAGAATGC-CTTTGTGGCTATC
1 TTTGTTAAAAGAAT-CACTTTGTGGCTATC
* *
32921924 TCTGTTAAAAGAATGC-CTTTGAGGCTATC
1 TTTGTTAAAAGAAT-CACTTTGTGGCTATC
* * * * *
32921953 TCTATTCAAAGGATGC-CTTTATGGCTATC
1 TTTGTTAAAAGAAT-CACTTTGTGGCTATC
* * ** *
32921982 TCTATTAAAAGAATTTCTATGTGGCTATC
1 TTTGTTAAAAGAATCACTTTGTGGCTATC
* *
32922011 TCTATTAAAAG
1 TTTGTTAAAAG
32922022 GATGCCTTTT
Statistics
Matches: 136, Mismatches: 17, Indels: 6
0.86 0.11 0.04
Matches are distributed among these distances:
28 7 0.05
29 129 0.95
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.41
Consensus pattern (29 bp):
TTTGTTAAAAGAATCACTTTGTGGCTATC
Found at i:32921899 original size:58 final size:58
Alignment explanation
Indices: 32921837--32921995 Score: 176
Period size: 58 Copynumber: 2.7 Consensus size: 58
32921827 TATGGCGAAA
* * * * *
32921837 TTTGTTATAAGGAAT-CATTTTTGGCTATGTTTGTTAAAAGAATGACTTTGTGGCTATC
1 TTTGTTA-AAAGAATGCATTTGTGGCTATCTCTGTTAAAAGAATGACTTTGAGGCTATC
* *
32921895 TTTGTTAAAAGAATGCCTTTGTGGCTATCTCTGTTAAAAGAATGCCTTTGAGGCTATC
1 TTTGTTAAAAGAATGCATTTGTGGCTATCTCTGTTAAAAGAATGACTTTGAGGCTATC
* * * * * * *
32921953 TCTATTCAAAGGATGCCTTTATGGCTATCTCTATTAAAAGAAT
1 TTTGTTAAAAGAATGCATTTGTGGCTATCTCTGTTAAAAGAAT
32921996 TTCTATGTGG
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
57 6 0.07
58 81 0.93
ACGTcount: A:0.28, C:0.13, G:0.19, T:0.40
Consensus pattern (58 bp):
TTTGTTAAAAGAATGCATTTGTGGCTATCTCTGTTAAAAGAATGACTTTGAGGCTATC
Found at i:32921930 original size:87 final size:87
Alignment explanation
Indices: 32921839--32922019 Score: 193
Period size: 87 Copynumber: 2.1 Consensus size: 87
32921829 TGGCGAAATT
** * * * * * *
32921839 TGTTATAAGGAAT-CATTTTTGGCTATGTTTGTTAAAAGAATGACTTTGTGGCTATCTTTGTTAA
1 TGTTA-AAGGAATGCATTTGAGGCTATCTCTATTAAAAGAATGACTTTATGGCTATCTCTATTAA
*
32921903 AAGAATGCCTTTGTGGCTATCTC
65 AAGAATGCCTATGTGGCTATCTC
* * * * *
32921926 TGTTAAAAGAATGCCTTTGAGGCTATCTCTATTCAAAGGATGCCTTTATGGCTATCTCTATTAAA
1 TGTTAAAGGAATGCATTTGAGGCTATCTCTATTAAAAGAATGACTTTATGGCTATCTCTATTAAA
**
32921991 AGAATTTCTATGTGGCTATCTC
66 AGAATGCCTATGTGGCTATCTC
*
32922013 TATTAAA
1 TGTTAAA
32922020 AGGATGCCTT
Statistics
Matches: 76, Mismatches: 17, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
86 6 0.08
87 70 0.92
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.40
Consensus pattern (87 bp):
TGTTAAAGGAATGCATTTGAGGCTATCTCTATTAAAAGAATGACTTTATGGCTATCTCTATTAAA
AGAATGCCTATGTGGCTATCTC
Found at i:32922008 original size:58 final size:57
Alignment explanation
Indices: 32921855--32922086 Score: 232
Period size: 58 Copynumber: 4.0 Consensus size: 57
32921845 AAGGAATCAT
* * * * * *
32921855 TTTTGGCTATGTTTGTTAAAAGAATGACTTTGTGGCTATCTTTGTTAAAAGAATGCC
1 TTTTGGCTATCTCTATTAAAAGAATGACTTTGTGGCTATCTCTATTAAAAGGATGCC
* * * *
32921912 TTTGTGGCTATCTCTGTTAAAAGAATGCCTTTGAGGCTATCTCTATTCAAAGGATGCC
1 TTT-TGGCTATCTCTATTAAAAGAATGACTTTGTGGCTATCTCTATTAAAAGGATGCC
** *
32921970 TTTATGGCTATCTCTATTAAAAGAATTTCTATGTGGCTATCTCTATTAAAAGGATGCC
1 TTT-TGGCTATCTCTATTAAAAGAATGACTTTGTGGCTATCTCTATTAAAAGGATGCC
* * * * * * * * *
32922028 TTTTTGATCATCTCTATTAAAGGAATG-CCTTATGGCAAACTATGTTAAAAGGATGCC
1 TTTTGGCT-ATCTCTATTAAAAGAATGACTTTGTGGCTATCTCTATTAAAAGGATGCC
32922085 TT
1 TT
32922087 CGTGACAAAA
Statistics
Matches: 147, Mismatches: 26, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
57 31 0.21
58 116 0.79
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.39
Consensus pattern (57 bp):
TTTTGGCTATCTCTATTAAAAGAATGACTTTGTGGCTATCTCTATTAAAAGGATGCC
Found at i:32922040 original size:29 final size:29
Alignment explanation
Indices: 32921870--32922058 Score: 227
Period size: 29 Copynumber: 6.5 Consensus size: 29
32921860 GCTATGTTTG
* * *
32921870 TTAAAAGAATGACTTTGTGGCTATCTTTG
1 TTAAAAGAATGCCTTTGTGGCTATCTCTA
*
32921899 TTAAAAGAATGCCTTTGTGGCTATCTCTG
1 TTAAAAGAATGCCTTTGTGGCTATCTCTA
*
32921928 TTAAAAGAATGCCTTTGAGGCTATCTCTA
1 TTAAAAGAATGCCTTTGTGGCTATCTCTA
* * *
32921957 TTCAAAGGATGCCTTTATGGCTATCTCTA
1 TTAAAAGAATGCCTTTGTGGCTATCTCTA
** *
32921986 TTAAAAGAATTTCTATGTGGCTATCTCTA
1 TTAAAAGAATGCCTTTGTGGCTATCTCTA
* * *
32922015 TTAAAAGGATGCCTTT-TTGATCATCTCTA
1 TTAAAAGAATGCCTTTGTGGCT-ATCTCTA
*
32922044 TTAAAGGAATGCCTT
1 TTAAAAGAATGCCTT
32922059 ATGGCAAACT
Statistics
Matches: 137, Mismatches: 22, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
28 3 0.02
29 134 0.98
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.39
Consensus pattern (29 bp):
TTAAAAGAATGCCTTTGTGGCTATCTCTA
Found at i:32927744 original size:26 final size:26
Alignment explanation
Indices: 32927715--32927810 Score: 104
Period size: 26 Copynumber: 3.7 Consensus size: 26
32927705 CAAACACACC
*
32927715 AATATCACTGTAAAGCTGCCAGTAAT
1 AATATCACTGCAAAGCTGCCAGTAAT
** *
32927741 AATATCACAACAAAGCTGCCAATAAT
1 AATATCACTGCAAAGCTGCCAGTAAT
*
32927767 AATATCA-TAGCAAAGCTGCCAGTAAC
1 AATATCACT-GCAAAGCTGCCAGTAAT
* * *
32927793 AGTATCGCAGCAAAGCTG
1 AATATCACTGCAAAGCTG
32927811 TAAGTATCAG
Statistics
Matches: 57, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
26 57 1.00
ACGTcount: A:0.42, C:0.22, G:0.16, T:0.21
Consensus pattern (26 bp):
AATATCACTGCAAAGCTGCCAGTAAT
Found at i:32927870 original size:27 final size:27
Alignment explanation
Indices: 32927813--32927876 Score: 92
Period size: 27 Copynumber: 2.4 Consensus size: 27
32927803 CAAAGCTGTA
*
32927813 AGTATCAGTATATGTGGCAAAGCCACC
1 AGTAACAGTATATGTGGCAAAGCCACC
* * *
32927840 AGTAACAGTATATGTGGCAATGCTACG
1 AGTAACAGTATATGTGGCAAAGCCACC
32927867 AGTAACAGTA
1 AGTAACAGTA
32927877 CACTTCCTCC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.23
Consensus pattern (27 bp):
AGTAACAGTATATGTGGCAAAGCCACC
Found at i:32929473 original size:28 final size:28
Alignment explanation
Indices: 32929440--32929498 Score: 100
Period size: 28 Copynumber: 2.1 Consensus size: 28
32929430 AATCAATGAG
*
32929440 TTAGTCACATAACAAAGCATCATGTAAT
1 TTAGTCACACAACAAAGCATCATGTAAT
*
32929468 TTAGTCACACAACAAAGCATTATGTAAT
1 TTAGTCACACAACAAAGCATCATGTAAT
32929496 TTA
1 TTA
32929499 TGTAGGTGAG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.42, C:0.17, G:0.10, T:0.31
Consensus pattern (28 bp):
TTAGTCACACAACAAAGCATCATGTAAT
Found at i:32931321 original size:16 final size:16
Alignment explanation
Indices: 32931302--32931344 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
32931292 TCTTTCGGCC
*
32931302 TTTTAACTTTTC-GACT
1 TTTTAGCTTTTCTG-CT
*
32931318 TTTTAGTTTTTCTGCT
1 TTTTAGCTTTTCTGCT
32931334 TTTTAGCTTTT
1 TTTTAGCTTTT
32931345 GCCATACTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 22 0.96
17 1 0.04
ACGTcount: A:0.12, C:0.14, G:0.09, T:0.65
Consensus pattern (16 bp):
TTTTAGCTTTTCTGCT
Found at i:32934288 original size:26 final size:26
Alignment explanation
Indices: 32934239--32934288 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
32934229 CCAACACACC
*
32934239 AATATCGCAGCAAAACTGCCAGTAAT
1 AATATCGCAGCAAAACTACCAGTAAT
* *
32934265 AATATCGCAGCAAAGCTACTAGTA
1 AATATCGCAGCAAAACTACCAGTA
32934289 TTAGTATTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.42, C:0.22, G:0.16, T:0.20
Consensus pattern (26 bp):
AATATCGCAGCAAAACTACCAGTAAT
Found at i:32937662 original size:27 final size:27
Alignment explanation
Indices: 32937632--32937828 Score: 229
Period size: 27 Copynumber: 7.3 Consensus size: 27
32937622 TATTGAAATG
**
32937632 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* *
32937659 CCCTCGATTT-CTAGAATTACCGTTTCA
1 CCCTCGATTTAC-AGAATTACCATTTTA
* * *
32937686 CCCTCGATTTACAAAATAACCGTTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* *
32937713 CCCTCGATTTATAG-ATTATCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* *
32937739 CCCTCGATTTACAGAATTATCGTTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* *
32937766 CCCTTGATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
*
32937793 CCCTC-AGTTTACAAAATTACCATTTTA
1 CCCTCGA-TTTACAGAATTACCATTTTA
32937820 CCCTCGATT
1 CCCTCGATT
32937829 GTGAAATTAC
Statistics
Matches: 147, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
26 23 0.16
27 122 0.83
28 2 0.01
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACCATTTTA
Found at i:32937806 original size:107 final size:107
Alignment explanation
Indices: 32937632--32937828 Score: 272
Period size: 107 Copynumber: 1.8 Consensus size: 107
32937622 TATTGAAATG
** * *
32937632 CCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTCTAGAATTACCGTTTCACCCTCGATTTA
1 CCCTCGATTTACAGAATTACCATTTTACCCTCGATTTCTAAAATTACCATTTCACCCTCGATTTA
*
32937697 CAAAATAACCGTTTTACCCTCGATTTATAGATTATCATTTTA
66 CAAAATAACCATTTTACCCTCGATTTATAGATTATCATTTTA
* * * *
32937739 CCCTCGATTTACAGAATTATCGTTTTACCCTTGATTTAC-AAAATTACCATTTTACCCTC-AGTT
1 CCCTCGATTTACAGAATTACCATTTTACCCTCGATTT-CTAAAATTACCATTTCACCCTCGA-TT
*
32937802 TACAAAATTACCATTTTACCCTCGATT
64 TACAAAATAACCATTTTACCCTCGATT
32937829 GTGAAATTAC
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
106 1 0.01
107 76 0.97
108 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.39
Consensus pattern (107 bp):
CCCTCGATTTACAGAATTACCATTTTACCCTCGATTTCTAAAATTACCATTTCACCCTCGATTTA
CAAAATAACCATTTTACCCTCGATTTATAGATTATCATTTTA
Found at i:32937837 original size:80 final size:80
Alignment explanation
Indices: 32937632--32937828 Score: 254
Period size: 80 Copynumber: 2.4 Consensus size: 80
32937622 TATTGAAATG
* *
32937632 CCCTCGATTTGTAGAATTACCATTTTACCCTCGATTT-CTAGAATTACCGTTTCACCCTCGATTT
1 CCCTCGATTT-AAAAATTACCATTTTACCCTCGATTTAC-AGAATTACCGTTTCACCCTCGATTT
*
32937696 ACAAAATAACCGTTTTA
64 ACAAAATAACCATTTTA
* * * * * *
32937713 CCCTCGATTTATAGATTATCATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTTGATTTAC
1 CCCTCGATTTAAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTAC
*
32937778 AAAATTACCATTTTA
66 AAAATAACCATTTTA
32937793 CCCTC-AGTTTACAAAATTACCATTTTACCCTCGATT
1 CCCTCGA-TTTA-AAAATTACCATTTTACCCTCGATT
32937829 GTGAAATTAC
Statistics
Matches: 100, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
79 1 0.01
80 67 0.67
81 32 0.32
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.39
Consensus pattern (80 bp):
CCCTCGATTTAAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTAC
AAAATAACCATTTTA
Found at i:32937848 original size:107 final size:104
Alignment explanation
Indices: 32937618--32937848 Score: 241
Period size: 107 Copynumber: 2.2 Consensus size: 104
32937608 TTAGTTTACC
* ** * *
32937618 AAATTATTGAAATGCCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTCTAGAATTACCGTT
1 AAATTA-TGAAATACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTCTAAAATTACCATT
*
32937683 TCACCCTCGATTTACAAAATAACCGTTTTACCCTCGATTT
65 TCACCCTCGATTTACAAAATAACCATTTTACCCTCGATTT
* ** * * *
32937723 ATAGATTATCATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTTGATTTAC-AAAATTACC
1 A-A-ATTATGA-AATACCCTCGATTTACAGAATTACCATTTTACCCTCGATTT-CTAAAATTACC
* *
32937787 ATTTTACCCTC-AGTTTACAAAATTACCATTTTACCCTCGATTGT
62 ATTTCACCCTCGA-TTTACAAAATAACCATTTTACCCTCGATT-T
32937831 GAAATTACTGAAATACCC
1 -AAATTA-TGAAATACCC
32937849 CTATAGGATA
Statistics
Matches: 101, Mismatches: 17, Indels: 14
0.77 0.13 0.11
Matches are distributed among these distances:
105 1 0.01
106 4 0.04
107 90 0.89
108 5 0.05
109 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.38
Consensus pattern (104 bp):
AAATTATGAAATACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTCTAAAATTACCATTT
CACCCTCGATTTACAAAATAACCATTTTACCCTCGATTT
Found at i:32937903 original size:27 final size:27
Alignment explanation
Indices: 32937873--32937924 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
32937863 TACCAAAATA
32937873 CCCCTAATA-GGTAAAAAGACCGTAAAG
1 CCCCT-ATAGGGTAAAAAGACCGTAAAG
**
32937900 CCCCTATAGGGTAAAGTGACCGTAA
1 CCCCTATAGGGTAAAAAGACCGTAA
32937925 TACCCTTGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 3 0.14
27 19 0.86
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.17
Consensus pattern (27 bp):
CCCCTATAGGGTAAAAAGACCGTAAAG
Found at i:32938831 original size:24 final size:25
Alignment explanation
Indices: 32938755--32938824 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
32938745 AGGAAGTGCT
* * * *
32938755 AAAAGGGCTATGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
32938780 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
32938805 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
32938825 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:32938837 original size:24 final size:24
Alignment explanation
Indices: 32938780--32938851 Score: 76
Period size: 25 Copynumber: 3.0 Consensus size: 24
32938770 TAGTTTACCG
32938780 AAAAG-GGCTTTGCCCCAGTTTATC
1 AAAAGAGGCTTTGCCCCAG-TTATC
*
32938804 AAAA-AGGGCTTTGCCCCAGTTATT
1 AAAAGA-GGCTTTGCCCCAGTTATC
**
32938828 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAGAGGCTTTGCC-CCAGTTAT
32938852 ATGATAAAGT
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
24 19 0.46
25 22 0.54
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGAGGCTTTGCCCCAGTTATC
Found at i:32939078 original size:30 final size:30
Alignment explanation
Indices: 32939044--32939117 Score: 121
Period size: 31 Copynumber: 2.4 Consensus size: 30
32939034 CGCTTACAGT
*
32939044 AAAGGCTTCGGCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCAATGATATGATTTATGA
*
32939074 AAAGGCTTCAGCCCAATGATATGATTTATGA
1 AAAGGCTTC-GGCCAATGATATGATTTATGA
32939105 AAAGGCTTCGGCC
1 AAAGGCTTCGGCC
32939118 CAGTACATGT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
30 12 0.30
31 28 0.70
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (30 bp):
AAAGGCTTCGGCCAATGATATGATTTATGA
Found at i:32957362 original size:23 final size:23
Alignment explanation
Indices: 32957334--32957380 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
32957324 AAATTTGGCG
32957334 TATAACTAATTTTCGCATAATGT
1 TATAACTAATTTTCGCATAATGT
32957357 TATAACTAATTTTCGCATAATGT
1 TATAACTAATTTTCGCATAATGT
32957380 T
1 T
32957381 CGCAGCACAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.34, C:0.13, G:0.09, T:0.45
Consensus pattern (23 bp):
TATAACTAATTTTCGCATAATGT
Found at i:32968125 original size:43 final size:42
Alignment explanation
Indices: 32968076--32968220 Score: 157
Period size: 43 Copynumber: 3.4 Consensus size: 42
32968066 TATCCCAAAT
* * *
32968076 ATGGTCTTACATGTTATCACATATCGATGCCACTGTCCCAGAC
1 ATGGTCTTACACGTAATCACATAT-GATGCCAATGTCCCAGAC
* * *
32968119 AGGGTCTTACACGAAATCGA-ATAATGATGCCAATGCCCCAGAC
1 ATGGTCTTACACGTAATC-ACAT-ATGATGCCAATGTCCCAGAC
** *
32968162 ATGGTCTTACACGTAATCACAATAAAATGCCAATGTCCCAAAC
1 ATGGTCTTACACGTAATCAC-ATATGATGCCAATGTCCCAGAC
*
32968205 ATGGTCTTACATGTAA
1 ATGGTCTTACACGTAA
32968221 GACCATATAT
Statistics
Matches: 85, Mismatches: 13, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
42 1 0.01
43 79 0.93
44 5 0.06
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.26
Consensus pattern (42 bp):
ATGGTCTTACACGTAATCACATATGATGCCAATGTCCCAGAC
Found at i:32974954 original size:28 final size:28
Alignment explanation
Indices: 32974914--32974970 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
32974904 TTTGTCGAAC
32974914 CTCTTACACATGGCAGTCTTAGTTTACA
1 CTCTTACACATGGCAGTCTTAGTTTACA
*
32974942 CTCTTACACATGGTAGTCTTAGTTTACA
1 CTCTTACACATGGCAGTCTTAGTTTACA
32974970 C
1 C
32974971 ATGGTAGTCT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.37
Consensus pattern (28 bp):
CTCTTACACATGGCAGTCTTAGTTTACA
Found at i:32985145 original size:57 final size:57
Alignment explanation
Indices: 32985057--32985171 Score: 214
Period size: 57 Copynumber: 2.0 Consensus size: 57
32985047 AATTCCAAAC
32985057 ATTATCCAAAATTTTCATATCACATTAAGAACAATACAAA-TATGTATTTGCAATATA
1 ATTATCCAAAATTTTCATATCACATTAAGAACAATA-AAACTATGTATTTGCAATATA
32985114 ATTATCCAAAATTTTCATATCACATTAAGAACAATAAAACTATGTATTTGCAATATA
1 ATTATCCAAAATTTTCATATCACATTAAGAACAATAAAACTATGTATTTGCAATATA
32985171 A
1 A
32985172 CAAACTTCAT
Statistics
Matches: 57, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
56 3 0.05
57 54 0.95
ACGTcount: A:0.46, C:0.14, G:0.05, T:0.35
Consensus pattern (57 bp):
ATTATCCAAAATTTTCATATCACATTAAGAACAATAAAACTATGTATTTGCAATATA
Found at i:32987081 original size:84 final size:86
Alignment explanation
Indices: 32986971--32987130 Score: 200
Period size: 84 Copynumber: 1.9 Consensus size: 86
32986961 ACACATATCG
* **** *
32986971 TACAATGCCAATGTCCCAGACGTGGTCTTACGTGTAATCACATGTCGATGCC-ACTGTCCCAGAC
1 TACAATGCCAATGTCCCAGACATGGTCTTACACAAAATCACATATCGATGCCAAC-GTCCCAGAC
*
32987035 AGGGTCTTACACAAATCACAAT
65 AGAGTCTTACACAAATCACAAT
* *
32987057 TACAATG-CAATG-CGCAGACATGGTCTTACACAAAATCACATATCGATGCCAACGTCCTAGACA
1 TACAATGCCAATGTCCCAGACATGGTCTTACACAAAATCACATATCGATGCCAACGTCCCAGACA
*
32987120 TAGTCTTACAC
66 GAGTCTTACAC
32987131 GAGAACACAT
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
84 49 0.78
85 7 0.11
86 7 0.11
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.24
Consensus pattern (86 bp):
TACAATGCCAATGTCCCAGACATGGTCTTACACAAAATCACATATCGATGCCAACGTCCCAGACA
GAGTCTTACACAAATCACAAT
Found at i:32987128 original size:43 final size:42
Alignment explanation
Indices: 32987006--32987144 Score: 119
Period size: 43 Copynumber: 3.3 Consensus size: 42
32986996 TCTTACGTGT
* *
32987006 AATCACATGTCGATGCC-ACTGTCCCAGACAGGGTCTTACAC-A
1 AATCACATATCGATGCCAAC-GT-CCAGACATGGTCTTACACAA
* *
32987048 AATCACA-ATTACAATG-CAATG-CGCAGACATGGTCTTACACAA
1 AATCACATA-T-CGATGCCAACGTC-CAGACATGGTCTTACACAA
* *
32987090 AATCACATATCGATGCCAACGTCCTAGACATAGTCTTACACGAG
1 AATCACATATCGATGCCAACGTCC-AGACATGGTCTTACAC-AA
32987134 AA-CACATATCG
1 AATCACATATCG
32987145 GAAATCCTAT
Statistics
Matches: 79, Mismatches: 8, Indels: 19
0.75 0.08 0.18
Matches are distributed among these distances:
40 1 0.01
41 20 0.25
42 24 0.30
43 31 0.39
44 3 0.04
ACGTcount: A:0.35, C:0.27, G:0.16, T:0.22
Consensus pattern (42 bp):
AATCACATATCGATGCCAACGTCCAGACATGGTCTTACACAA
Found at i:32988276 original size:14 final size:15
Alignment explanation
Indices: 32988259--32988287 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
32988249 GCACGAAAAT
32988259 TTCACACAT-ATAAA
1 TTCACACATAATAAA
32988273 TTCACACATAATAAA
1 TTCACACATAATAAA
32988288 CACTGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:32994156 original size:43 final size:42
Alignment explanation
Indices: 32993993--32994158 Score: 156
Period size: 43 Copynumber: 3.9 Consensus size: 42
32993983 CGTACAATGG
* * * * *
32993993 CAACGTCCTTGACGTGATCTTACATGTAATCACATGTCGATGC
1 CAACGTCCTAGACGTGGTCTTACACG-AAACACATATCGATGC
** *
32994036 CATTGTCCTAGACAG-GGTCTTACACGAATCACA-ATTACGATGC
1 CAACGTCCTAGAC-GTGGTCTTACACGAAACACATA-T-CGATGC
* * * *
32994079 CAATGTCCCAGACATGGTCTTACTCGAAATCACATATCGATGC
1 CAACGTCCTAGACGTGGTCTTACACGAAA-CACATATCGATGC
32994122 CAACGTCCTAGACGTGGTCTTACACGAGAACACATAT
1 CAACGTCCTAGACGTGGTCTTACACGA-AACACATAT
32994159 GAAAAATCCT
Statistics
Matches: 101, Mismatches: 15, Indels: 14
0.78 0.12 0.11
Matches are distributed among these distances:
42 8 0.08
43 84 0.83
44 8 0.08
45 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.26
Consensus pattern (42 bp):
CAACGTCCTAGACGTGGTCTTACACGAAACACATATCGATGC
Found at i:32996689 original size:46 final size:46
Alignment explanation
Indices: 32996634--32996803 Score: 182
Period size: 46 Copynumber: 3.7 Consensus size: 46
32996624 TCTCATAGCT
* *
32996634 GATGCATGTCCCAGACATGTCTTACACTTGCT-TACATCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATCTCGAGGCA
* * * **
32996680 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGTT
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAGGCA
* * * *
32996726 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGACA
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCAT-CTCGAGGCA
*
32996774 TATGCATGTCCCAGACATGTCTTACACTAG
1 GATGCATGTCCCAGACATGTCTTACACTAG
32996804 AGCACAAATG
Statistics
Matches: 103, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
46 53 0.51
47 29 0.28
48 20 0.19
49 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAGGCA
Found at i:32996779 original size:94 final size:91
Alignment explanation
Indices: 32996593--32996804 Score: 243
Period size: 94 Copynumber: 2.3 Consensus size: 91
32996583 AGGCTGACGC
*
32996593 CATGTCGCAGACATGGTCTTACACT-GACACGTCTCATAGCTGATGCATGTCCCAGACATGTCTT
1 CATGTCCCAGACAT-GTCTTACACTAGACACGTCTCATAGCTGATGCATGTCCCAGACATGTCTT
* * * *
32996657 ACACTTGCTTACATCTCGAGGCCGATG
65 ACACTGGCTTACATATCGAGACAGATG
* * *
32996684 CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCA-ATGTTGATGCCATGTCCCAGACATGGT
1 CATGTCCCAGACATGTCTTACACTAG-ACACGTCTCATA-GCTGATG-CATGTCCCAGACAT-GT
* *
32996748 CTTACACTGGCTCT-CATAAT-GTGACATATG
62 CTTACACTGGCT-TACAT-ATCGAGACAGATG
32996778 CATGTCCCAGACATGTCTTACACTAGA
1 CATGTCCCAGACATGTCTTACACTAGA
32996805 GCACAAATGA
Statistics
Matches: 103, Mismatches: 11, Indels: 12
0.82 0.09 0.10
Matches are distributed among these distances:
90 10 0.10
91 15 0.15
92 14 0.14
93 14 0.14
94 48 0.47
95 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (91 bp):
CATGTCCCAGACATGTCTTACACTAGACACGTCTCATAGCTGATGCATGTCCCAGACATGTCTTA
CACTGGCTTACATATCGAGACAGATG
Found at i:32998636 original size:30 final size:32
Alignment explanation
Indices: 32998604--32998664 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
32998594 TTTTAAATTA
*
32998604 TTTTCACTATTTTAAATA-T-AAATTATTTTAT
1 TTTTCAC-ATTTTAAAAATTAAAATTATTTTAT
*
32998635 TTTTTACATTTTAAAAATTAAAATTATTTT
1 TTTTCACATTTTAAAAATTAAAATTATTTT
32998665 TAAATTAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 9 0.35
31 7 0.27
32 10 0.38
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (32 bp):
TTTTCACATTTTAAAAATTAAAATTATTTTAT
Found at i:32998688 original size:21 final size:21
Alignment explanation
Indices: 32998653--32998696 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
32998643 TTTTAAAAAT
**
32998653 TAAAATTATTTTTAAATT-AAA
1 TAAAATTATAATT-AATTCAAA
32998674 TAAAATTATAATTAATTCAAA
1 TAAAATTATAATTAATTCAAA
32998695 TA
1 TA
32998697 GTCATAATTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (21 bp):
TAAAATTATAATTAATTCAAA
Found at i:32999114 original size:19 final size:18
Alignment explanation
Indices: 32999078--32999115 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
32999068 TACACACGAA
32999078 ATATTTAAATAAAAATAT
1 ATATTTAAATAAAAATAT
* *
32999096 ATATTTTAAT-ATAATAT
1 ATATTTAAATAAAAATAT
32999113 ATA
1 ATA
32999116 ATAAATAAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
ATATTTAAATAAAAATAT
Found at i:33001002 original size:17 final size:16
Alignment explanation
Indices: 33000980--33001011 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
33000970 ACAGTAACAC
33000980 CTTTTTTTTTTCTTTTT
1 CTTTTTTTTTT-TTTTT
33000997 CTTTTTTTTTTTTTT
1 CTTTTTTTTTTTTTT
33001012 ACAATTCAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (16 bp):
CTTTTTTTTTTTTTTT
Found at i:33009384 original size:32 final size:32
Alignment explanation
Indices: 33009337--33009421 Score: 125
Period size: 32 Copynumber: 2.7 Consensus size: 32
33009327 ACGAGAGTGT
* *
33009337 CCCAAGCCACACGGGCGTGTGTGACCACACGG
1 CCCAACCCACACGGGCGTGTGTAACCACACGG
*
33009369 CCTAACCCACACGGGCGTGTGTAACCACACGG
1 CCCAACCCACACGGGCGTGTGTAACCACACGG
* *
33009401 CCCAACCCATACAGGCGTGTG
1 CCCAACCCACACGGGCGTGTG
33009422 ACTCTCCAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 47 1.00
ACGTcount: A:0.24, C:0.38, G:0.27, T:0.12
Consensus pattern (32 bp):
CCCAACCCACACGGGCGTGTGTAACCACACGG
Found at i:33009398 original size:18 final size:18
Alignment explanation
Indices: 33009343--33009400 Score: 54
Period size: 18 Copynumber: 3.4 Consensus size: 18
33009333 GTGTCCCAAG
*
33009343 CCACACGGGCGTGTGTGA
1 CCACACGGGCGTGTGTAA
*
33009361 CCACAC-GGC----CTAA
1 CCACACGGGCGTGTGTAA
33009374 CCCACACGGGCGTGTGTAA
1 -CCACACGGGCGTGTGTAA
33009393 CCACACGG
1 CCACACGG
33009401 CCCAACCCAT
Statistics
Matches: 31, Mismatches: 3, Indels: 12
0.67 0.07 0.26
Matches are distributed among these distances:
13 2 0.06
14 6 0.19
15 3 0.10
17 3 0.10
18 14 0.45
19 3 0.10
ACGTcount: A:0.22, C:0.36, G:0.29, T:0.12
Consensus pattern (18 bp):
CCACACGGGCGTGTGTAA
Found at i:33015593 original size:16 final size:16
Alignment explanation
Indices: 33015572--33015609 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
33015562 TCGGTTAGGC
33015572 TTGAATTGCAAAGAAA
1 TTGAATTGCAAAGAAA
33015588 TTGAATTGCAAAGAAA
1 TTGAATTGCAAAGAAA
33015604 TTGAAT
1 TTGAAT
33015610 AAAAATCACT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.47, C:0.05, G:0.18, T:0.29
Consensus pattern (16 bp):
TTGAATTGCAAAGAAA
Found at i:33019032 original size:46 final size:45
Alignment explanation
Indices: 33018982--33019157 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 45
33018972 TGATTGAGCA
33018982 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
33019028 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
*
33019073 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA-C
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* *
33019120 TCCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
33019158 GCAGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 6 0.05
46 61 0.55
47 29 0.26
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.31
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:33019138 original size:93 final size:93
Alignment explanation
Indices: 33018979--33019150 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
33018969 GGATGATTGA
*
33018979 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATCTCCGAACTCGTTGAGT
33019044 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
33019072 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA-CTCCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATCTCC-GAACTCGTTGAG
33019136 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
33019151 CTTATGGGCA
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 3 0.04
93 72 0.96
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATCTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:33026327 original size:25 final size:25
Alignment explanation
Indices: 33026299--33026349 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
33026289 AACTCTTGCT
33026299 CCTTGATCAGCTCCTAAATCTTCTC
1 CCTTGATCAGCTCCTAAATCTTCTC
* *
33026324 CCTTTATCAGCTTCTAAATCTTCTC
1 CCTTGATCAGCTCCTAAATCTTCTC
33026349 C
1 C
33026350 TTTATCCCCT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.20, C:0.35, G:0.06, T:0.39
Consensus pattern (25 bp):
CCTTGATCAGCTCCTAAATCTTCTC
Found at i:33026364 original size:25 final size:25
Alignment explanation
Indices: 33026312--33026364 Score: 72
Period size: 25 Copynumber: 2.1 Consensus size: 25
33026302 TGATCAGCTC
*
33026312 CTAAATCTTCTCCCTTTATCAGCTT
1 CTAAATCTTCTCCCTTTATCACCTT
*
33026337 CTAAATCTTCT-CCTTTATCCCCTCT
1 CTAAATCTTCTCCCTTTATCACCT-T
33026362 CTA
1 CTA
33026365 CTCAATCACT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 10 0.40
25 15 0.60
ACGTcount: A:0.19, C:0.36, G:0.02, T:0.43
Consensus pattern (25 bp):
CTAAATCTTCTCCCTTTATCACCTT
Found at i:33032716 original size:27 final size:26
Alignment explanation
Indices: 33032661--33032763 Score: 109
Period size: 27 Copynumber: 3.8 Consensus size: 26
33032651 GCCAGAAAAC
* * *
33032661 ATAATGTGACAGAGTCGCCAGATACAG
1 ATAATGTGGCAGAGCCACCAGAT-CAG
*
33032688 ATAATCGTGGTAGAGCCACCAGAAT-AG
1 ATAAT-GTGGCAGAGCCACCAG-ATCAG
33032715 ATATATGTGGCAGAGCCACCAGATCAG
1 ATA-ATGTGGCAGAGCCACCAGATCAG
*
33032742 ATAATTGTGGCATAGCCACCAG
1 ATAA-TGTGGCAGAGCCACCAG
33032764 GACGCTTCCT
Statistics
Matches: 65, Mismatches: 6, Indels: 10
0.80 0.07 0.12
Matches are distributed among these distances:
26 3 0.05
27 46 0.71
28 14 0.22
29 2 0.03
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.19
Consensus pattern (26 bp):
ATAATGTGGCAGAGCCACCAGATCAG
Found at i:33034179 original size:25 final size:24
Alignment explanation
Indices: 33034146--33034202 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 24
33034136 AACTCTTGCT
*
33034146 CCTTGATCAGCTCCTAAATCTTCTCC
1 CCTT-ATCAGCTCCTAAATCTTAT-C
*
33034172 CCTTATCAGCTCCTTAATCTTATC
1 CCTTATCAGCTCCTAAATCTTATC
33034196 CCTTATC
1 CCTTATC
33034203 CCCTCCCTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 8 0.28
25 17 0.59
26 4 0.14
ACGTcount: A:0.19, C:0.37, G:0.05, T:0.39
Consensus pattern (24 bp):
CCTTATCAGCTCCTAAATCTTATC
Found at i:33037542 original size:14 final size:15
Alignment explanation
Indices: 33037523--33037551 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
33037513 AAAGTTCATA
33037523 TGGATT-TTCTTGTC
1 TGGATTATTCTTGTC
33037537 TGGATTATTCTTGTC
1 TGGATTATTCTTGTC
33037552 CTTGAAAGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.10, C:0.14, G:0.21, T:0.55
Consensus pattern (15 bp):
TGGATTATTCTTGTC
Found at i:33039570 original size:43 final size:42
Alignment explanation
Indices: 33039504--33039614 Score: 118
Period size: 42 Copynumber: 2.6 Consensus size: 42
33039494 AGTAAGTAAA
* * *
33039504 ATGCCGATTTCCCAGAC-GTGGTCTTACATTTAATTC-AATATCG
1 ATGCCGATGTCCCAGACAG-GGTCTTACA-TGAAATCAAATA-CG
**
33039547 ATGCCTCTGTCCCAGACAGGGTCTTACATGAAATCAAATACG
1 ATGCCGATGTCCCAGACAGGGTCTTACATGAAATCAAATACG
* *
33039589 ATGTCGATGTCCCAGACATGGTCTTA
1 ATGCCGATGTCCCAGACAGGGTCTTA
33039615 TACGTAAATC
Statistics
Matches: 57, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
42 29 0.51
43 27 0.47
44 1 0.02
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (42 bp):
ATGCCGATGTCCCAGACAGGGTCTTACATGAAATCAAATACG
Found at i:33041428 original size:16 final size:16
Alignment explanation
Indices: 33041407--33041443 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
33041397 CGGCTAGGCT
33041407 TGAATTGCAAGGAAAC
1 TGAATTGCAAGGAAAC
* *
33041423 TGAATTGTAAGGAAAT
1 TGAATTGCAAGGAAAC
33041439 TGAAT
1 TGAAT
33041444 AAAAATCATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.43, C:0.05, G:0.24, T:0.27
Consensus pattern (16 bp):
TGAATTGCAAGGAAAC
Found at i:33043568 original size:50 final size:50
Alignment explanation
Indices: 33043493--33043840 Score: 342
Period size: 50 Copynumber: 6.9 Consensus size: 50
33043483 ACCGAAGCTC
* * *
33043493 TCTGGTACGCATAGTAGCATGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* * *** *
33043543 TCTGGTACACATAATAGTCTGCACTTAGTACTACACATGTGGTTTATCCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* * * * * *
33043593 TTTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-TTGAAGTTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCT--A-TCAA
* *
33043645 -CGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* * ** * ** * *
33043694 TCTAGTAAATGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAACTA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CCTATCAA
* *
33043745 T-TAGGTACACATAGTAGCCTGCACTTAGTACCACACATGTGACCTAACAA
1 TCT-GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* * **
33043795 TCTGGTACACGTAGTAGCCCGCACTTAGTACTACACACATGACCTA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTA
33043841 AAACTATCTT
Statistics
Matches: 239, Mismatches: 51, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
49 5 0.02
50 156 0.65
51 75 0.31
52 3 0.01
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.27
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
Found at i:33043681 original size:101 final size:101
Alignment explanation
Indices: 33043546--33043832 Score: 378
Period size: 101 Copynumber: 2.8 Consensus size: 101
33043536 CTATCAATCT
* * *** * *
33043546 GGTACACATAATAGTCTGCACTTAGTACTACACATGTGGTTTATCCATTTGATACACGTAGTAGC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGATACACGTAGTAGC
* ** *
33043611 CTGCACTTAGTACTACACACGTGATTGAAGTTAACG
66 CTGCACTTAGTACTACACACGTGATCGAAACTAACA
* * *
33043647 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCT-AGTAAATGTAGTAG
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGA-TACACGTAGTAG
**
33043711 CCTGCACTTAGTACTACACACGTGATCGAAACTATTA
65 CCTGCACTTAGTACTACACACGTGATCGAAACTAACA
* * *
33043748 GGTACACATAGTAGCCTGCACTTAGTACCACACATGTGACCTAACAATCTGGTACACGTAGTAGC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGATACACGTAGTAGC
*
33043813 CCGCACTTAGTACTACACAC
66 CTGCACTTAGTACTACACAC
33043833 ATGACCTAAA
Statistics
Matches: 161, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
100 1 0.01
101 160 0.99
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (101 bp):
GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGATACACGTAGTAGC
CTGCACTTAGTACTACACACGTGATCGAAACTAACA
Found at i:33043802 original size:151 final size:151
Alignment explanation
Indices: 33043493--33043840 Score: 405
Period size: 151 Copynumber: 2.3 Consensus size: 151
33043483 ACCGAAGCTC
* * * *
33043493 TCTGGTACGCATAGTAGCATGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACATAAT
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTAGTAAACATAAT
* * * ** * * *
33043558 AGTCTGCACTTAGTACTACACATGTGGTTTATCCATTTGATACACGTAGTAGCCTGCACTTAGTA
66 AGCCTGCACTTAGTACTACACACGTGATGAAACCATTAGATACACATAGTAGCCTGCACTTAGTA
* * *
33043623 CTACACACGTGATTGAAGTTAA
131 CCACACACGTGACTGAAG-CAA
* ** *
33043645 -CGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTAGTAAATGTAGT
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTAGTAAACATAAT
* *
33043709 AGCCTGCACTTAGTACTACACACGTGATCGAAACTATTAGGTACACATAGTAGCCTGCACTTAGT
66 AGCCTGCACTTAGTACTACACACGTGAT-GAAACCATTAGATACACATAGTAGCCTGCACTTAGT
*
33043774 ACCACACATGTGACCT-AA-CAA
130 ACCACACACGTGA-CTGAAGCAA
* * * **
33043795 TCTGGTACACGTAGTAGCCCGCACTTAGTACTACACACATGACCTA
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTA
33043841 AAACTATCTT
Statistics
Matches: 165, Mismatches: 28, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
150 2 0.01
151 120 0.73
152 42 0.25
153 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.27
Consensus pattern (151 bp):
TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTAGTAAACATAAT
AGCCTGCACTTAGTACTACACACGTGATGAAACCATTAGATACACATAGTAGCCTGCACTTAGTA
CCACACACGTGACTGAAGCAA
Found at i:33043875 original size:101 final size:100
Alignment explanation
Indices: 33043653--33043883 Score: 250
Period size: 101 Copynumber: 2.3 Consensus size: 100
33043643 AACGGGTACG
* ** * * *
33043653 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTAGTAAATGTAGTAGCCTGCAC
1 CATAGTAGCCTGAAAATAGTACTACACATGTGACCTAACAATCTAGTAAACGTAGTAGCCCGCAC
* * * * *
33043718 TTAGTACTACACACGTGATCGAAACTATTAGGTACA
66 TTAGTACTACACACATGACCAAAACTATTA-GAAAA
* ** * * *
33043754 CATAGTAGCCTGCACTTAGTACCACACATGTGACCTAACAATCTGGTACACGTAGTAGCCCGCAC
1 CATAGTAGCCTGAAAATAGTACTACACATGTGACCTAACAATCTAGTAAACGTAGTAGCCCGCAC
33043819 TTAGTACTACACACATGACCTAAAACTATCTTA-AAAA
66 TTAGTACTACACACATGACC-AAAACTA--TTAGAAAA
*
33043856 CGTAGTAGCCT-AAAATAGTACTACACAT
1 CATAGTAGCCTGAAAATAGTACTACACAT
33043884 TTGTTCTCAC
Statistics
Matches: 111, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
101 90 0.81
102 18 0.16
104 3 0.03
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.26
Consensus pattern (100 bp):
CATAGTAGCCTGAAAATAGTACTACACATGTGACCTAACAATCTAGTAAACGTAGTAGCCCGCAC
TTAGTACTACACACATGACCAAAACTATTAGAAAA
Found at i:33058441 original size:43 final size:43
Alignment explanation
Indices: 33058335--33058443 Score: 141
Period size: 42 Copynumber: 2.6 Consensus size: 43
33058325 ATAGGATTTC
* *
33058335 CGATATTTGATTTCGTGTAAGACCCTGTCTAGGACATCAGTAT
1 CGATATTTGATTTCGTGTAAGACCCTATCTAGGACATCAGCAT
* *
33058378 CG-TATTTGATTTCGTGTAAGACCCTATCTAGGATAGT-GGCAT
1 CGATATTTGATTTCGTGTAAGACCCTATCTAGGACA-TCAGCAT
* *
33058420 CGATATTTGATTACATGTAAGACC
1 CGATATTTGATTTCGTGTAAGACC
33058444 ACGTCTGAGA
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
42 36 0.62
43 22 0.38
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (43 bp):
CGATATTTGATTTCGTGTAAGACCCTATCTAGGACATCAGCAT
Found at i:33061460 original size:27 final size:27
Alignment explanation
Indices: 33061430--33061489 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
33061420 CGATTTACAA
* *
33061430 AATTATTAAAATACCCCTGTAGGGTAG
1 AATTACTAAAATACCCATGTAGGGTAG
*
33061457 AATTACTGAAATACCCATGTAGGGTAG
1 AATTACTAAAATACCCATGTAGGGTAG
33061484 AATTAC
1 AATTAC
33061490 CGAGATACCC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.28
Consensus pattern (27 bp):
AATTACTAAAATACCCATGTAGGGTAG
Found at i:33061509 original size:27 final size:27
Alignment explanation
Indices: 33061438--33061499 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
33061428 AAAATTATTA
* *
33061438 AAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCATGTAGGGTAGAATTACCG
33061465 AAATACCCATGTAGGGTAGAATTACCG
1 AAATACCCATGTAGGGTAGAATTACCG
*
33061492 AGATACCC
1 AAATACCC
33061500 TTACGGGGTA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.23
Consensus pattern (27 bp):
AAATACCCATGTAGGGTAGAATTACCG
Found at i:33061904 original size:14 final size:14
Alignment explanation
Indices: 33061865--33061906 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
33061855 CATGTTACCG
33061865 AAGGCTATGTGCCA
1 AAGGCTATGTGCCA
* * *
33061879 AACG-TATTTGCCC
1 AAGGCTATGTGCCA
33061892 AAGGCTATGTGCCA
1 AAGGCTATGTGCCA
33061906 A
1 A
33061907 TATATGATTA
Statistics
Matches: 21, Mismatches: 6, Indels: 2
0.72 0.21 0.07
Matches are distributed among these distances:
13 10 0.48
14 11 0.52
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.24
Consensus pattern (14 bp):
AAGGCTATGTGCCA
Found at i:33062084 original size:22 final size:22
Alignment explanation
Indices: 33062031--33062091 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
33062021 GCCAATTATT
* *
33062031 CTGATTATGGCTTTGCGCTAAC
1 CTGATTATGGCTTTGTGCCAAC
**
33062053 CT-ACAAATGGCTTTGTGCCAAC
1 CTGA-TTATGGCTTTGTGCCAAC
*
33062075 CTGATTATGGCTGTGTG
1 CTGATTATGGCTTTGTG
33062092 TTGTTATTGT
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
21 1 0.03
22 28 0.93
23 1 0.03
ACGTcount: A:0.20, C:0.21, G:0.25, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTTTGTGCCAAC
Found at i:33062136 original size:20 final size:20
Alignment explanation
Indices: 33062096--33062136 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
33062086 TGTGTGTTGT
*
33062096 TATTGTGGGCTTCGTATCAA
1 TATTGTGGGCTTCGTACCAA
*
33062116 TATTGTGGGCTTCGTGCCAA
1 TATTGTGGGCTTCGTACCAA
33062136 T
1 T
33062137 TATAGACCGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.17, C:0.17, G:0.27, T:0.39
Consensus pattern (20 bp):
TATTGTGGGCTTCGTACCAA
Found at i:33062425 original size:25 final size:25
Alignment explanation
Indices: 33062380--33062440 Score: 86
Period size: 25 Copynumber: 2.4 Consensus size: 25
33062370 CATTCACATT
* * *
33062380 CTGATTCTAATTTTGTTACCTGATA
1 CTGATTCTGATTCTGTCACCTGATA
*
33062405 CTGATTCTGATTCTGTCACCTGATT
1 CTGATTCTGATTCTGTCACCTGATA
33062430 CTGATTCTGAT
1 CTGATTCTGAT
33062441 CCTCATTTTG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.20, C:0.20, G:0.15, T:0.46
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACCTGATA
Found at i:33080012 original size:6 final size:6
Alignment explanation
Indices: 33079991--33080112 Score: 106
Period size: 6 Copynumber: 19.8 Consensus size: 6
33079981 TATTAGAACT
* * *
33079991 AGAATC AAAATG AGAATC AGAATC AGAATC A-AGTGAC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * *
33080040 AGAATC AGAATC AGAATC AGGTGAT- AGAATT AGAATC AGAATC AGTATC
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC AGAATC
*
33080089 AGGTAA-C AGAATC AAAATC AGAAT
1 A-G-AATC AGAATC AGAATC AGAAT
33080113 GTGAATGCAA
Statistics
Matches: 94, Mismatches: 13, Indels: 18
0.75 0.10 0.14
Matches are distributed among these distances:
5 6 0.06
6 76 0.81
7 7 0.07
8 5 0.05
ACGTcount: A:0.49, C:0.13, G:0.19, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:33080032 original size:37 final size:37
Alignment explanation
Indices: 33079991--33080112 Score: 148
Period size: 37 Copynumber: 3.5 Consensus size: 37
33079981 TATTAGAACT
* *
33079991 AGAATCAAAATGAGAATCAGAATCAGAATCAAGTGAC
1 AGAATCAAAATCAGAATCAGAATCAGAATCAGGTGAC
* *
33080028 AGAATCAGAATCAGAATCAGAATCAGAATCAGGTGAT
1 AGAATCAAAATCAGAATCAGAATCAGAATCAGGTGAC
* *
33080065 AGAAT-----T-AGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGAATCAGAATCAGGTGAC
33080096 AGAATCAAAATCAGAAT
1 AGAATCAAAATCAGAAT
33080113 GTGAATGCAA
Statistics
Matches: 72, Mismatches: 7, Indels: 12
0.79 0.08 0.13
Matches are distributed among these distances:
31 27 0.38
32 1 0.01
36 1 0.01
37 43 0.60
ACGTcount: A:0.49, C:0.13, G:0.19, T:0.19
Consensus pattern (37 bp):
AGAATCAAAATCAGAATCAGAATCAGAATCAGGTGAC
Found at i:33080041 original size:31 final size:31
Alignment explanation
Indices: 33080003--33080112 Score: 112
Period size: 31 Copynumber: 3.4 Consensus size: 31
33079993 AATCAAAATG
33080003 AGAATCAGAATCAGAATCAAGTGACAGAATC
1 AGAATCAGAATCAGAATCAAGTGACAGAATC
* *
33080034 AGAATCAGAATCAGAATCAGAATCAGGTGATAGAATT
1 AGAATCAGAATCAGAATC---A--A-GTGACAGAATC
* * *
33080071 AGAATCAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAAGTGACAGAATC
*
33080102 AAAATCAGAAT
1 AGAATCAGAAT
33080113 GTGAATGCAA
Statistics
Matches: 65, Mismatches: 8, Indels: 12
0.76 0.09 0.14
Matches are distributed among these distances:
31 36 0.55
34 2 0.03
36 1 0.02
37 26 0.40
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAAGTGACAGAATC
Found at i:33080644 original size:27 final size:27
Alignment explanation
Indices: 33080614--33080951 Score: 399
Period size: 27 Copynumber: 12.5 Consensus size: 27
33080604 AACACCCTAG
* *
33080614 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
*
33080641 GGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
* * * *
33080668 GGGTAAAACAGT-ATTCCTATAAATTGA
1 GGGTAAAACGGTAATT-TTGTAAATCGA
* *
33080695 GGGTAAAACGATAATTCTGTAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
**
33080722 GGGTAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
**
33080749 GGGTAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
* * *
33080776 GGGTAAAACGATAATTCTGTAAATTGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
*
33080803 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
* * *
33080830 TGGTAAAACAGTAATTTTGTAAATTGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
*
33080857 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
* * * * *
33080884 GGATAAAATGGTAATTCTATAAATTGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
*
33080911 GGGTAAAACGATAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
* *
33080938 GCGTAAAATGGTAA
1 GGGTAAAACGGTAA
33080952 CTGTACAAGT
Statistics
Matches: 267, Mismatches: 42, Indels: 4
0.85 0.13 0.01
Matches are distributed among these distances:
26 3 0.01
27 261 0.98
28 3 0.01
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.30
Consensus pattern (27 bp):
GGGTAAAACGGTAATTTTGTAAATCGA
Found at i:33081920 original size:30 final size:30
Alignment explanation
Indices: 33081886--33081947 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
33081876 TACCGCTGCA
33081886 CACTCTGATCCTACTATCACTATCACACTT
1 CACTCTGATCCTACTATCACTATCACACTT
*
33081916 CACTCTGATCCTACTATCATTATCACACTT
1 CACTCTGATCCTACTATCACTATCACACTT
33081946 CA
1 CA
33081948 ACTAGAACTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.27, C:0.35, G:0.03, T:0.34
Consensus pattern (30 bp):
CACTCTGATCCTACTATCACTATCACACTT
Found at i:33082965 original size:6 final size:6
Alignment explanation
Indices: 33082935--33083059 Score: 78
Period size: 6 Copynumber: 20.3 Consensus size: 6
33082925 AAGAAACATT
* * *
33082935 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCA-A GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * * *
33082984 ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATTAGA ATTAGA ATCAGT
1 ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCAGA
*
33083033 ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCA-G-A ATCAGA ATCAGA ATCAGA AT
33083060 GTCAATGCAA
Statistics
Matches: 92, Mismatches: 16, Indels: 22
0.71 0.12 0.17
Matches are distributed among these distances:
5 6 0.07
6 74 0.80
7 8 0.09
8 4 0.04
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:33082993 original size:31 final size:31
Alignment explanation
Indices: 33082956--33083059 Score: 145
Period size: 31 Copynumber: 3.4 Consensus size: 31
33082946 AATCAAAATG
*
33082956 AGAATCAGAATCAGAATCAAGTGACAGAATC
1 AGAATCAGAATCAGAATCAGGTGACAGAATC
* *
33082987 AGAATCAGAATCAGAATTAGGTGACAGAATT
1 AGAATCAGAATCAGAATCAGGTGACAGAATC
* * *
33083018 AGAATTAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGGTGACAGAATC
*
33083049 AAAATCAGAAT
1 AGAATCAGAAT
33083060 GTCAATGCAA
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.48, C:0.12, G:0.19, T:0.20
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGGTGACAGAATC
Found at i:33083217 original size:27 final size:26
Alignment explanation
Indices: 33083178--33083260 Score: 76
Period size: 27 Copynumber: 3.0 Consensus size: 26
33083168 GCGAGGCTGC
*
33083178 CAGATATTATGGCGAAGTCACCAGATA
1 CAGATATTATGGCGAAGCCACCAGA-A
* * *
33083205 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTATGGCGAAGCCACCAGAA
33083231 CAGATATATATATGTGGCGAAGCCACCAGA
1 CAG--ATAT-TA--TGGCGAAGCCACCAGA
33083261 TTACAGCGAG
Statistics
Matches: 44, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
26 4 0.09
27 21 0.48
28 4 0.09
29 1 0.02
31 14 0.32
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.20
Consensus pattern (26 bp):
CAGATATTATGGCGAAGCCACCAGAA
Found at i:33083638 original size:54 final size:54
Alignment explanation
Indices: 33083574--33083837 Score: 347
Period size: 54 Copynumber: 4.9 Consensus size: 54
33083564 GGTAAAATTG
* *
33083574 TAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAA
1 TAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACAA
* * * *
33083628 T-ATTCCTATAAATCGAGGGTAAAATGATAATACTATAAATCGAGGGTAAAACAG
1 TAATT-CTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACAA
* * * *
33083682 TAATTCTATAAATCGAGGGTAAAATGATAATTCTGTAAATTGAGGGTAAAATAG
1 TAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACAA
* * * * *
33083736 TAATTTTTTAAATCGAGGGTAAAACGGTAATTTTGTACATCGAGGGT-AAA-AA
1 TAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACAA
*
33083788 -AATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAA
1 TAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAA
33083838 TGGTAATTTT
Statistics
Matches: 184, Mismatches: 23, Indels: 8
0.86 0.11 0.04
Matches are distributed among these distances:
51 41 0.22
52 4 0.02
53 6 0.03
54 130 0.71
55 3 0.02
ACGTcount: A:0.42, C:0.09, G:0.20, T:0.29
Consensus pattern (54 bp):
TAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACAA
Found at i:33083675 original size:81 final size:79
Alignment explanation
Indices: 33083562--33083845 Score: 367
Period size: 81 Copynumber: 3.6 Consensus size: 79
33083552 TAACACCCTA
*
33083562 AGGGTAAAATTG-TAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC
1 AGGGTAAAA-TGATAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAA-
*
33083626 AATATTCCTATAAATCG
64 AATATT-CTGTAAATCG
* * * *
33083643 AGGGTAAAATGATAATACTATAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATG
1 AGGGTAAAATGATAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAA-A
*
33083708 ATAATTCTGTAAATTG
65 AT-ATTCTGTAAATCG
* * * *
33083724 AGGGTAAAAT-AGTAATTTTTTAAATCGAGGGTAAAACGGTAATTTTGTACATCGAGGGTAAAAA
1 AGGGTAAAATGA-TAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAA
33083788 A-ATTCTGTAAATCG
65 ATATTCTGTAAATCG
* * *
33083802 AGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAATGGTAATT
1 AGGGTAAAATGATAATTCTATAAATCGAGGGTAAAACGGTAATT
33083846 TTACAAGTCG
Statistics
Matches: 178, Mismatches: 21, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
78 50 0.28
79 1 0.01
80 4 0.02
81 120 0.67
82 3 0.02
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.29
Consensus pattern (79 bp):
AGGGTAAAATGATAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAAA
TATTCTGTAAATCG
Found at i:33083844 original size:27 final size:27
Alignment explanation
Indices: 33083562--33083845 Score: 306
Period size: 27 Copynumber: 10.6 Consensus size: 27
33083552 TAACACCCTA
** * *
33083562 AGGGTAAAATTGTAATTTTATAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
33083589 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
** *
33083616 AGGGTAAAACAAT-ATTCCTATAAATCG
1 AGGGTAAAACGGTAATT-CTGTAAATCG
* * * *
33083643 AGGGTAAAATGATAATACTATAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
* *
33083670 AGGGTAAAACAGTAATTCTATAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
* * *
33083697 AGGGTAAAATGATAATTCTGTAAATTG
1 AGGGTAAAACGGTAATTCTGTAAATCG
** * *
33083724 AGGGTAAAATAGTAATTTTTTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
* *
33083751 AGGGTAAAACGGTAATTTTGTACATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
*
33083778 AGGGTAAAA---AAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
*
33083802 AGGGTAAAACGATAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
*
33083829 AGGGTAAAATGGTAATT
1 AGGGTAAAACGGTAATT
33083846 TTACAAGTCG
Statistics
Matches: 218, Mismatches: 34, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
24 21 0.10
26 3 0.01
27 192 0.88
28 2 0.01
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.29
Consensus pattern (27 bp):
AGGGTAAAACGGTAATTCTGTAAATCG
Found at i:33091108 original size:40 final size:40
Alignment explanation
Indices: 33091051--33091144 Score: 118
Period size: 40 Copynumber: 2.4 Consensus size: 40
33091041 CACAGTCTTA
* * * *
33091051 CACACTAAGTGCCATATATAACCAAAGTTAT-TCCGATACG
1 CACACTAAGTGCTATATATAACCAAAGCTATCT-CAAAACG
* *
33091091 CACACTAAGTGCTATATATAGCCGAAGCTATCTCAAAACG
1 CACACTAAGTGCTATATATAACCAAAGCTATCTCAAAACG
33091131 CACACTAAGTGCTA
1 CACACTAAGTGCTA
33091145 AACATAGTTG
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
40 46 0.98
41 1 0.02
ACGTcount: A:0.37, C:0.26, G:0.14, T:0.23
Consensus pattern (40 bp):
CACACTAAGTGCTATATATAACCAAAGCTATCTCAAAACG
Found at i:33096894 original size:46 final size:46
Alignment explanation
Indices: 33096844--33097019 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
33096834 TGGTTGAGCA
* *
33096844 TCCGAACTCGTTGAGTTGAATCCGAGTTCACTTTTGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
33096890 TCCGAACTCGTTGAGTTGAGTCCGAG-T---TTGTGAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--G
*
33096935 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
33096983 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
33097020 GCGGAGATTA
Statistics
Matches: 110, Mismatches: 9, Indels: 22
0.78 0.06 0.16
Matches are distributed among these distances:
42 6 0.05
43 5 0.05
45 2 0.02
46 59 0.54
47 26 0.24
48 2 0.02
50 4 0.04
51 6 0.05
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:33097000 original size:93 final size:93
Alignment explanation
Indices: 33096841--33097010 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 93
33096831 GGATGGTTGA
* * *
33096841 GCATCCGAACTCGTTGAGTTGAATCCGAGTTCACTTTTGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAATCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
33096906 TGAGTCCGAGTTTGTGAGATGTAACTAG
66 TGAGTCCGAGTTTGTGAGATGTAACTAG
* *
33096934 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAATCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
33096999 TGAGTCCGAGTT
66 TGAGTCCGAGTT
33097011 CGCTTATGGG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAATCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTTGTGAGATGTAACTAG
Found at i:33109143 original size:43 final size:43
Alignment explanation
Indices: 33108973--33109146 Score: 163
Period size: 43 Copynumber: 4.0 Consensus size: 43
33108963 ATAGGATTTC
* * *
33108973 TGATATGTG-TTCTCATGTAAGACAACATCTAGGACATTGGCAT
1 TGATATGTGATT-ACATGTAAGACCACGTCTAGGACATTGGCAT
** * * * *
33109016 CAATATGTGATTACGTGTAAGACCATGTCTAGGACACTAGCAT
1 TGATATGTGATTACATGTAAGACCACGTCTAGGACATTGGCAT
* * * * *
33109059 TAATATGTGATTACCTGTAAGACC-CTGTCTGGGATAGTGGCAT
1 TGATATGTGATTACATGTAAGACCAC-GTCTAGGACATTGGCAT
* * *
33109102 TGATATGTGATTATATGTAAGACCACGTCTAAGACGTTGGCAT
1 TGATATGTGATTACATGTAAGACCACGTCTAGGACATTGGCAT
33109145 TG
1 TG
33109147 TACGATATGT
Statistics
Matches: 104, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
43 101 0.97
44 3 0.03
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (43 bp):
TGATATGTGATTACATGTAAGACCACGTCTAGGACATTGGCAT
Found at i:33119166 original size:13 final size:13
Alignment explanation
Indices: 33119148--33119174 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
33119138 GCTAGGCAGG
33119148 GACACGCCCGTGT
1 GACACGCCCGTGT
33119161 GACACGCCCGTGT
1 GACACGCCCGTGT
33119174 G
1 G
33119175 CGATTACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:33121068 original size:40 final size:40
Alignment explanation
Indices: 33120971--33121196 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
33120961 TCGAACGATG
* * * * *
33120971 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
33121011 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
33121051 TTCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
33121091 TCCGGGTTAAGTCCTGAAGGCATTTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
33121131 TCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
33121172 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
33121197 AACGAGTAGC
Statistics
Matches: 161, Mismatches: 21, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
39 1 0.01
40 150 0.93
41 10 0.06
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:33121223 original size:80 final size:80
Alignment explanation
Indices: 33120971--33121229 Score: 251
Period size: 80 Copynumber: 3.2 Consensus size: 80
33120961 TCGAACGATG
* * * * * * *
33120971 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAATTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCAT
** * *
33121034 TTGTGCGAGATACTAAT
64 TTGAACGAGTTACTAAA
* * * *
33121051 TTCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCTGAAGGCATTT
1 TCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
***
33121116 GTGTGAGTTACTAAA
66 GAACGAGTTACTAAA
*
33121131 TCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
*
33121195 TGAACGAG-TAGCTATA
65 TGAACGAGTTA-CTAAA
33121211 TCC-GGTTAAATT-CCGAAGG
1 TCCGGGTT-AATTCCCGAAGG
33121230 TACGTGATTT
Statistics
Matches: 153, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
79 14 0.09
80 130 0.85
81 9 0.06
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (80 bp):
TCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
GAACGAGTTACTAAA
Found at i:33129126 original size:40 final size:40
Alignment explanation
Indices: 33129029--33129254 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
33129019 TCGAATGATG
* * * * *
33129029 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
33129069 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
33129109 TTCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
33129149 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
33129189 TCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
33129230 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
33129255 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 17, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
39 1 0.01
40 154 0.93
41 10 0.06
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:33129261 original size:80 final size:79
Alignment explanation
Indices: 33129029--33129287 Score: 292
Period size: 80 Copynumber: 3.3 Consensus size: 79
33129019 TCGAATGATG
* * * * * *
33129029 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
33129092 TTGTGCGAGATACTAAT
64 TTGTGCGAG-TACTAAA
* *
33129109 TTCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATT
33129173 TGTGCGAGTTACTAAA
65 TGTGCGAG-TACTAAA
* *
33129189 TCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
** *
33129254 GAACGAGTAGCTATA
66 GTGCGAGTA-CTAAA
* *
33129269 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
33129288 TACGTGATTT
Statistics
Matches: 155, Mismatches: 19, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
79 18 0.12
80 128 0.83
81 9 0.06
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGTACTAAA
Found at i:33129261 original size:120 final size:120
Alignment explanation
Indices: 33129029--33129287 Score: 285
Period size: 120 Copynumber: 2.2 Consensus size: 120
33129019 TCGAATGATG
* *
33129029 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
** * **
33129094 GTGCGAGATACTAATTTCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAAA
66 GTGCGAGATACTAATACCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCTAAA
* * * ** *
33129149 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAA-TTCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
33129212 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTAAA
* *
33129269 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
33129288 TACGTGATTT
Statistics
Matches: 117, Mismatches: 18, Indels: 9
0.81 0.12 0.06
Matches are distributed among these distances:
119 19 0.16
120 91 0.78
121 7 0.06
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (120 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTAAA
Found at i:33145622 original size:43 final size:43
Alignment explanation
Indices: 33145571--33145681 Score: 136
Period size: 43 Copynumber: 2.6 Consensus size: 43
33145561 CATAGGATTT
* *
33145571 TCAATATGTG-TTCTCGTGTAAGA-CTAGGTCTGGGACATTGGCA
1 TCAATATGTGATT-ACGTGTAAGACCT-GGTCTGGGACAGTGGCA
* * *
33145614 TCGATATGTGATTACGTGTAAGACCTTGTGTGGGACAGTGGCA
1 TCAATATGTGATTACGTGTAAGACCTGGTCTGGGACAGTGGCA
*
33145657 TCAATATGTGATTACATGTAAGACC
1 TCAATATGTGATTACGTGTAAGACC
33145682 ATGTTTGGGA
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
43 55 0.93
44 4 0.07
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.32
Consensus pattern (43 bp):
TCAATATGTGATTACGTGTAAGACCTGGTCTGGGACAGTGGCA
Found at i:33145691 original size:43 final size:43
Alignment explanation
Indices: 33145587--33145700 Score: 140
Period size: 43 Copynumber: 2.7 Consensus size: 43
33145577 TGTGTTCTCG
* * * * *
33145587 TGTAAGACTAGGTCTGGGACATTGGCATCGATATGTGATTACG
1 TGTAAGACCATGTCTGGGACAGTGGCATCAATATGTGATTACA
* *
33145630 TGTAAGACCTTGTGTGGGACAGTGGCATCAATATGTGATTACA
1 TGTAAGACCATGTCTGGGACAGTGGCATCAATATGTGATTACA
*
33145673 TGTAAGACCATGTTTGGGAC-GTTGGCAT
1 TGTAAGACCATGTCTGGGACAG-TGGCAT
33145701 TGTACGATAT
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
42 1 0.02
43 60 0.98
ACGTcount: A:0.25, C:0.14, G:0.30, T:0.31
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACAGTGGCATCAATATGTGATTACA
Done.