Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 99 of 343
Found at i:33154680 original size:48 final size:48
Alignment explanation
Indices: 33154591--33154751 Score: 259
Period size: 48 Copynumber: 3.3 Consensus size: 48
33154581 TGTACAAGAT
* * *
33154591 AAATATATATGAGAAATGTATATATATGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATG--TATATGTGGTAAAGCCGAATGGCTAATGTG
33154641 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
33154689 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
33154737 AAATATGTAGGAGAT
1 AAATATGTATGAGAT
33154752 GTGTGTATAT
Statistics
Matches: 106, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
48 90 0.85
50 16 0.15
ACGTcount: A:0.38, C:0.06, G:0.26, T:0.30
Consensus pattern (48 bp):
AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
Found at i:33157328 original size:43 final size:42
Alignment explanation
Indices: 33157278--33157443 Score: 201
Period size: 43 Copynumber: 3.9 Consensus size: 42
33157268 ATAGGATTTT
*
33157278 TGATATGTG-TTCTCATGTAAGACCACATCTGGGACATTGGCA
1 TGATATGTGATTAT-ATGTAAGACCACATCTGGGACATTGGCA
*
33157320 CTGATATGTGATTATGTGTAAGACCACATCTGGGACATTGGCA
1 -TGATATGTGATTATATGTAAGACCACATCTGGGACATTGGCA
* * * *
33157363 TTGATATGTGATTATGTGTAAGACC-CTGTCTGGGAGAGTGGCA
1 -TGATATGTGATTATATGTAAGACCAC-ATCTGGGACATTGGCA
* *
33157406 TCGATATGTGATTACATGTAAGACCGCATCTGGGACAT
1 T-GATATGTGATTATATGTAAGACCACATCTGGGACAT
33157444 CAGCATTGTA
Statistics
Matches: 108, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
42 2 0.02
43 102 0.94
44 4 0.04
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.31
Consensus pattern (42 bp):
TGATATGTGATTATATGTAAGACCACATCTGGGACATTGGCA
Found at i:33158036 original size:20 final size:18
Alignment explanation
Indices: 33158003--33158039 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
33157993 TGTGATGTTG
33158003 ATATGTTTAATTTAATTA
1 ATATGTTTAATTTAATTA
33158021 ATATGGTTTAAATTTAATT
1 ATAT-GTTT-AATTTAATT
33158040 CGTGTTAGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 4 0.24
20 9 0.53
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (18 bp):
ATATGTTTAATTTAATTA
Found at i:33161153 original size:22 final size:23
Alignment explanation
Indices: 33161114--33161156 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
33161104 GAAATCCTAC
*
33161114 CCGTCCATCCTCTACACTCCACT
1 CCGTCCAACCTCTACACTCCACT
33161137 CCGTCCAACC-CTACACTCCA
1 CCGTCCAACCTCTACACTCCA
33161157 TGTGCGGATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.21, C:0.53, G:0.05, T:0.21
Consensus pattern (23 bp):
CCGTCCAACCTCTACACTCCACT
Found at i:33163943 original size:79 final size:81
Alignment explanation
Indices: 33163807--33163991 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
33163797 TTGAATGATG
*
33163807 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
33163871 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
33163886 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
33163948 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
33163966 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
33163992 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:33164005 original size:40 final size:40
Alignment explanation
Indices: 33163808--33163991 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
33163798 TGAATGATGT
* * * *
33163808 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
33163848 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
33163888 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
33163926 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
33163967 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
33163992 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:33164013 original size:79 final size:79
Alignment explanation
Indices: 33163808--33164024 Score: 201
Period size: 79 Copynumber: 2.7 Consensus size: 79
33163798 TGAATGATGT
** * * * **
33163808 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
33163871 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
33163888 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
33163953 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
33163967 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
33164025 TACGTGATTT
Statistics
Matches: 116, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 71 0.61
80 42 0.36
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:33171836 original size:40 final size:39
Alignment explanation
Indices: 33171752--33171936 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 39
33171742 TTGAATGATG
* * * *
33171752 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
33171792 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
33171832 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
33171871 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
33171912 -CCGGGCTATGTCCTGAAGGCATTTG
1 TCCGGGCTAAGTCC-GAAGGCATTTG
33171937 AACGAGGAGC
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 37 0.30
40 78 0.62
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:33171888 original size:79 final size:81
Alignment explanation
Indices: 33171752--33171936 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
33171742 TTGAATGATG
*
33171752 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
33171816 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
33171831 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
33171893 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* * *
33171911 ACCGGGCTATGTCCTGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
33171937 AACGAGGAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.64
80 32 0.35
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:33171958 original size:79 final size:79
Alignment explanation
Indices: 33171753--33171969 Score: 192
Period size: 79 Copynumber: 2.7 Consensus size: 79
33171743 TGAATGATGT
** * * * **
33171753 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
33171816 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
33171833 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
33171898 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * * *
33171912 CCGGGCTATGTCCTGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
33171970 TACGTGATTT
Statistics
Matches: 115, Mismatches: 17, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
78 3 0.03
79 71 0.62
80 41 0.36
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:33178650 original size:79 final size:79
Alignment explanation
Indices: 33178510--33178731 Score: 254
Period size: 79 Copynumber: 2.8 Consensus size: 79
33178500 TATTCGAATG
* * * * **
33178510 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGAGC-GAGTTACTATATCCGGGTTAAG-TCCGAAGGC
33178575 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTTACT
* *
33178591 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGAGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGC
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATATCCGGGTTAAGT-CCGAAGGC
33178654 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTTACT
* * * *
33178670 ATAACCAGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTA-CTATATCCGGGTT-AAGTCCGAAGG
33178732 TATGTGATTC
Statistics
Matches: 121, Mismatches: 14, Indels: 14
0.81 0.09 0.09
Matches are distributed among these distances:
78 1 0.01
79 63 0.52
80 45 0.37
81 12 0.10
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATATCCGGGTTAAGTCCGAAGGCAT
TTGTGCGAGTTACT
Found at i:33178664 original size:40 final size:40
Alignment explanation
Indices: 33178512--33178705 Score: 232
Period size: 40 Copynumber: 4.8 Consensus size: 40
33178502 TTCGAATGAT
* * * *
33178512 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
*
33178553 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
33178593 TTCCGGGCTAAG-CCCGAAGGCATTGGAGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
*
33178632 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* * *
33178673 A-CCAGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
33178706 AGCTATATCC
Statistics
Matches: 132, Mismatches: 17, Indels: 9
0.84 0.11 0.06
Matches are distributed among these distances:
39 34 0.26
40 69 0.52
41 28 0.21
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:33186869 original size:40 final size:41
Alignment explanation
Indices: 33186672--33186862 Score: 160
Period size: 40 Copynumber: 4.8 Consensus size: 41
33186662 GAATGATATC
* * * * * *
33186672 CGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGATTAT-ATC
1 CGGGCTAAGTCCCGAAGGCATTTGAGC-GAGTTACTATAATA
* * * * *
33186713 CGGACTAAGAT-CCGAAGGCATTTGTGCAAGTTACTA-ATTT
1 CGGGCTAAG-TCCCGAAGGCATTTGAGCGAGTTACTATAATA
** *
33186753 CAAGCTAAG-CCCGAAGGCATTGGAGCGAGTTACTA-AATA
1 CGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATAATA
* * *
33186792 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-C
1 CGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATAATA
*
33186832 CGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CGGGCTAAGTCCCGAAGGCATTTGAGCGAGT
33186863 AGCTATATCT
Statistics
Matches: 122, Mismatches: 23, Indels: 11
0.78 0.15 0.07
Matches are distributed among these distances:
39 30 0.25
40 66 0.54
41 25 0.20
42 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (41 bp):
CGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATAATA
Found at i:33190847 original size:44 final size:44
Alignment explanation
Indices: 33190796--33190888 Score: 177
Period size: 44 Copynumber: 2.1 Consensus size: 44
33190786 AATTAGAAAT
33190796 TTCAAAACTTTAATACAATTTCAAATTCTACCATTTAATATTTA
1 TTCAAAACTTTAATACAATTTCAAATTCTACCATTTAATATTTA
33190840 TTCAAAACTTTAATACAATTTCAAATTCTACCATTTAATATTTA
1 TTCAAAACTTTAATACAATTTCAAATTCTACCATTTAATATTTA
*
33190884 CTCAA
1 TTCAA
33190889 CTTGATTACC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 48 1.00
ACGTcount: A:0.41, C:0.17, G:0.00, T:0.42
Consensus pattern (44 bp):
TTCAAAACTTTAATACAATTTCAAATTCTACCATTTAATATTTA
Found at i:33190867 original size:25 final size:25
Alignment explanation
Indices: 33190796--33190867 Score: 68
Period size: 25 Copynumber: 3.1 Consensus size: 25
33190786 AATTAGAAAT
33190796 TTCAAAACTTTAATACAATTTCAAA
1 TTCAAAACTTTAATACAATTTCAAA
* *
33190821 TTC-TACCATTTAAT---ATTT---A
1 TTCAAAAC-TTTAATACAATTTCAAA
33190840 TTCAAAACTTTAATACAATTTCAAA
1 TTCAAAACTTTAATACAATTTCAAA
33190865 TTC
1 TTC
33190868 TACCATTTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 16
0.64 0.07 0.29
Matches are distributed among these distances:
19 10 0.29
20 2 0.06
22 8 0.23
24 2 0.06
25 13 0.37
ACGTcount: A:0.42, C:0.17, G:0.00, T:0.42
Consensus pattern (25 bp):
TTCAAAACTTTAATACAATTTCAAA
Found at i:33190876 original size:25 final size:25
Alignment explanation
Indices: 33190804--33190879 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
33190794 ATTTCAAAAC
33190804 TTTAATACAATTTCAAATTCTACCA
1 TTTAATACAATTTCAAATTCTACCA
**
33190829 TTTAAT---ATTT---ATTC-AAAA
1 TTTAATACAATTTCAAATTCTACCA
33190847 CTTTAATACAATTTCAAATTCTACCA
1 -TTTAATACAATTTCAAATTCTACCA
33190873 TTTAATA
1 TTTAATA
33190880 TTTACTCAAC
Statistics
Matches: 39, Mismatches: 4, Indels: 16
0.66 0.07 0.27
Matches are distributed among these distances:
18 2 0.05
19 10 0.26
22 8 0.21
25 17 0.44
26 2 0.05
ACGTcount: A:0.41, C:0.16, G:0.00, T:0.43
Consensus pattern (25 bp):
TTTAATACAATTTCAAATTCTACCA
Found at i:33192877 original size:56 final size:56
Alignment explanation
Indices: 33192817--33192953 Score: 195
Period size: 56 Copynumber: 2.5 Consensus size: 56
33192807 TCCTAGATAG
* * *
33192817 GGTCTTACTCGCACACATATATCGGAGTCACATATCAATGCCAACGTATTAAACGT
1 GGTCTTACTCACACACATATATCGAAGTCACATATCAATGCCAACGTATTAAACGA
* ** * *
33192873 GGTCTTACTCACACACATATATCAAAGTCACATATTGATTCCAATGTATTAAACGA
1 GGTCTTACTCACACACATATATCGAAGTCACATATCAATGCCAACGTATTAAACGA
33192929 GGTCTTACTCAC-CACATATATCGAA
1 GGTCTTACTCACACACATATATCGAA
33192954 ATCCTATGTC
Statistics
Matches: 72, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
55 12 0.17
56 60 0.83
ACGTcount: A:0.34, C:0.24, G:0.13, T:0.28
Consensus pattern (56 bp):
GGTCTTACTCACACACATATATCGAAGTCACATATCAATGCCAACGTATTAAACGA
Found at i:33195252 original size:31 final size:31
Alignment explanation
Indices: 33195209--33195323 Score: 187
Period size: 31 Copynumber: 3.7 Consensus size: 31
33195199 TTAGTCTTGA
* *
33195209 CATAT-ACTGGGCCGAAGCCTTTCCACAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
33195239 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
33195270 CATATCACTGGGCCAAAGCCTTTTTATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
33195301 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
33195324 ACTGTAAACG
Statistics
Matches: 79, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
30 5 0.06
31 74 0.94
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.28
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:33195394 original size:42 final size:42
Alignment explanation
Indices: 33195347--33195480 Score: 250
Period size: 42 Copynumber: 3.2 Consensus size: 42
33195337 TGGCCCTTAG
*
33195347 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
33195389 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
*
33195431 GCCCATTTCAATATCACATGTAATGTTAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
33195473 GCCCATTT
1 GCCCATTT
33195481 GGGGAGACTA
Statistics
Matches: 90, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 90 1.00
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:33195656 original size:25 final size:25
Alignment explanation
Indices: 33195628--33195697 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
33195618 CTCTTTTAAT
*
33195628 AACTGGGGCAGAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
*
33195653 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
33195678 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
33195698 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 38 0.90
26 4 0.10
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:33196525 original size:27 final size:28
Alignment explanation
Indices: 33196494--33196559 Score: 77
Period size: 27 Copynumber: 2.5 Consensus size: 28
33196484 TACGGAACAT
*
33196494 AAGGGCATATT-CG-TCATTTTACCATAC
1 AAGGGC-TATTACGATCACTTTACCATAC
*
33196521 AAGGG-TATTACGATCACTTTACCCTAC
1 AAGGGCTATTACGATCACTTTACCATAC
33196548 AAGGGCT-TTACG
1 AAGGGCTATTACG
33196560 GTCTTTTTAC
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
25 4 0.12
26 2 0.06
27 27 0.79
28 1 0.03
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (28 bp):
AAGGGCTATTACGATCACTTTACCATAC
Found at i:33196568 original size:27 final size:27
Alignment explanation
Indices: 33196507--33196570 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
33196497 GGCATATTCG
33196507 TCATTTTACCATACAAGGGTATTACGA
1 TCATTTTACCATACAAGGGTATTACGA
* * *
33196534 TCACTTTACCCTACAAGGGCT-TTACGG
1 TCATTTTACCATACAAGGG-TATTACGA
*
33196561 TCTTTTTACC
1 TCATTTTACC
33196571 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (27 bp):
TCATTTTACCATACAAGGGTATTACGA
Found at i:33196654 original size:27 final size:27
Alignment explanation
Indices: 33196624--33196790 Score: 169
Period size: 27 Copynumber: 6.1 Consensus size: 27
33196614 GTAAATCTAC
*
33196624 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTGT
*
33196651 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTT-TAGTAATTTTGT
* *
33196677 AGAAAGTCAAGGGTATTTTTGTAATTTTGT
1 --AAA-CCAAGGGTATTTTAGTAATTTTGT
* * **
33196707 AAATCAAGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTTAGTAATTTTGT
*
33196734 AAACC-AGTGGTATTTTGGTAATTTTGT
1 AAACCAAG-GGTATTTTAGTAATTTTGT
* *
33196761 AAACCAAGGTTATTTTAGTAATTTTTT
1 AAACCAAGGGTATTTTAGTAATTTTGT
33196788 AAA
1 AAA
33196791 TTGAGGGTAA
Statistics
Matches: 118, Mismatches: 14, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
26 3 0.03
27 87 0.74
28 10 0.08
29 17 0.14
30 1 0.01
ACGTcount: A:0.33, C:0.08, G:0.17, T:0.43
Consensus pattern (27 bp):
AAACCAAGGGTATTTTAGTAATTTTGT
Found at i:33196719 original size:56 final size:53
Alignment explanation
Indices: 33196621--33196786 Score: 181
Period size: 56 Copynumber: 3.0 Consensus size: 53
33196611 TTGGTAAATC
* *
33196621 TACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCTATAATTTT
1 TACAAA-CAAGGGTATTTTAGTAATTTTGTAAACCAAGGGTATTT-TATAATTTT
* * * *
33196676 TAGAAAGTCAAGGGTATTTTTGTAATTTTGTAAATCAAGGGTATTTTGGTAA-TTT
1 TACAAA--CAAGGGTATTTTAGTAATTTTGTAAACCAAGGGTATTTT-ATAATTTT
* * *
33196731 TACAAACCAGTGGTATTTTGGTAATTTTGTAAACCAAGGTTATTTTAGTAATTTT
1 TACAAACAAG-GGTATTTTAGTAATTTTGTAAACCAAGGGTATTTTA-TAATTTT
33196786 T
1 T
33196787 TAAATTGAGG
Statistics
Matches: 93, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
53 3 0.03
54 35 0.38
55 18 0.19
56 37 0.40
ACGTcount: A:0.32, C:0.08, G:0.17, T:0.43
Consensus pattern (53 bp):
TACAAACAAGGGTATTTTAGTAATTTTGTAAACCAAGGGTATTTTATAATTTT
Found at i:33196756 original size:83 final size:81
Alignment explanation
Indices: 33196628--33196791 Score: 188
Period size: 83 Copynumber: 2.0 Consensus size: 81
33196618 ATCTACAAAC
** *
33196628 CAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCTATAATTTT-TAGAAAGTCAAGGGTA
1 CAAGGGTATTTCAGTAATTTTACAAACCAATGGTATTTCTATAATTTTGT--AAA-CCAAGGGTA
*
33196692 TTTTTGTAATTTTGTAAAT
63 TTTTAGTAATTTTGTAAAT
** * * *
33196711 CAAGGGTATTTTGGTAATTTTACAAACCAGTGGTATTT-TGGTAATTTTGTAAACCAAGGTTATT
1 CAAGGGTATTTCAGTAATTTTACAAACCAATGGTATTTCT-ATAATTTTGTAAACCAAGGGTATT
*
33196775 TTAGTAATTTTTTAAAT
65 TTAGTAATTTTGTAAAT
33196792 TGAGGGTAAA
Statistics
Matches: 69, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
81 24 0.35
82 4 0.06
83 40 0.58
84 1 0.01
ACGTcount: A:0.32, C:0.07, G:0.17, T:0.44
Consensus pattern (81 bp):
CAAGGGTATTTCAGTAATTTTACAAACCAATGGTATTTCTATAATTTTGTAAACCAAGGGTATTT
TAGTAATTTTGTAAAT
Found at i:33196808 original size:27 final size:27
Alignment explanation
Indices: 33196778--33196896 Score: 166
Period size: 27 Copynumber: 4.4 Consensus size: 27
33196768 GGTTATTTTA
* * *
33196778 GTAATTTTTTAAATTGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
33196805 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * * *
33196832 GTAATTTTGTAAATTGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
33196859 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
33196886 GTAATTCTATA
1 GTAATTCTATA
33196897 GGTAATTCTG
Statistics
Matches: 81, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 81 1.00
ACGTcount: A:0.39, C:0.06, G:0.22, T:0.34
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:33196889 original size:54 final size:54
Alignment explanation
Indices: 33196778--33196891 Score: 201
Period size: 54 Copynumber: 2.1 Consensus size: 54
33196768 GGTTATTTTA
* *
33196778 GTAATTTTTTAAATTGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTTTGTAAATTGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
*
33196832 GTAATTTTGTAAATTGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATTGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
33196886 GTAATT
1 GTAATT
33196892 CTATAGGTAA
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 57 1.00
ACGTcount: A:0.39, C:0.05, G:0.23, T:0.33
Consensus pattern (54 bp):
GTAATTTTGTAAATTGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
Found at i:33203441 original size:54 final size:54
Alignment explanation
Indices: 33203328--33203442 Score: 176
Period size: 54 Copynumber: 2.1 Consensus size: 54
33203318 TTAGTTTACT
*
33203328 AAATTACTGAAATACCCCTATAGGGTAGAATTATCGAAATACCCTTGTAAGGTA
1 AAATTACTGAAATACCCCTATAGGGTAGAATTACCGAAATACCCTTGTAAGGTA
* * * **
33203382 GAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAGATACCCTTGTGGGGTA
1 AAATTACTGAAATACCCCTATAGGGTAGAATTACCGAAATACCCTTGTAAGGTA
33203436 AAATTAC
1 AAATTAC
33203443 CATTTTGCCC
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (54 bp):
AAATTACTGAAATACCCCTATAGGGTAGAATTACCGAAATACCCTTGTAAGGTA
Found at i:33203443 original size:27 final size:27
Alignment explanation
Indices: 33203329--33203443 Score: 140
Period size: 27 Copynumber: 4.3 Consensus size: 27
33203319 TAGTTTACTA
* * *
33203329 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
33203356 AATTATCGAAATACCCTTGTAAGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
33203383 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
33203410 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
33203437 AATTACC
1 AATTACC
33203444 ATTTTGCCCC
Statistics
Matches: 74, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 74 1.00
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:33203684 original size:27 final size:26
Alignment explanation
Indices: 33203644--33203731 Score: 95
Period size: 27 Copynumber: 3.3 Consensus size: 26
33203634 ATGGAAGAAG
*
33203644 TGTTCTGGTAGCTCCGCCACAAATATC
1 TGTTCTGGTGGCTCCGCCAC-AATATC
* *
33203671 TGTTCTGGTGGCTCCTCCATAATATC
1 TGTTCTGGTGGCTCCGCCACAATATC
* * *
33203697 TGTATCTGGTGACTCTGTCACAATATC
1 TGT-TCTGGTGGCTCCGCCACAATATC
*
33203724 TATTCTGG
1 TGTTCTGG
33203732 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
26 14 0.27
27 37 0.73
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.36
Consensus pattern (26 bp):
TGTTCTGGTGGCTCCGCCACAATATC
Found at i:33203862 original size:6 final size:6
Alignment explanation
Indices: 33203853--33203936 Score: 50
Period size: 6 Copynumber: 13.7 Consensus size: 6
33203843 ATTCACATTT
* * *
33203853 TGATTC TGATTC TG-TTACC TGATAC TGATTC TGATTC TG-TCACC TAATTC
1 TGATTC TGATTC TGATT--C TGATTC TGATTC TGATTC TGAT--TC TGATTC
*
33203903 TGATTC TGATTC TCATT- TCGATTC T-AGTTC TGAT
1 TGATTC TGATTC TGATTC T-GATTC TGA-TTC TGAT
33203937 AATGTTTCTT
Statistics
Matches: 60, Mismatches: 8, Indels: 20
0.68 0.09 0.23
Matches are distributed among these distances:
5 5 0.08
6 46 0.77
7 7 0.12
8 2 0.03
ACGTcount: A:0.19, C:0.20, G:0.14, T:0.46
Consensus pattern (6 bp):
TGATTC
Found at i:33203881 original size:25 final size:25
Alignment explanation
Indices: 33203853--33203915 Score: 99
Period size: 25 Copynumber: 2.5 Consensus size: 25
33203843 ATTCACATTT
* *
33203853 TGATTCTGATTCTGTTACCTGATAC
1 TGATTCTGATTCTGTCACCTAATAC
*
33203878 TGATTCTGATTCTGTCACCTAATTC
1 TGATTCTGATTCTGTCACCTAATAC
33203903 TGATTCTGATTCT
1 TGATTCTGATTCT
33203916 CATTTCGATT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.19, C:0.21, G:0.14, T:0.46
Consensus pattern (25 bp):
TGATTCTGATTCTGTCACCTAATAC
Found at i:33207013 original size:37 final size:37
Alignment explanation
Indices: 33206952--33207030 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
33206942 TTATTACGAA
* * *
33206952 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
* *
33206989 GTCTTACCCGGATAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
33207026 GTCTT
1 GTCTT
33207031 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:33207227 original size:47 final size:47
Alignment explanation
Indices: 33207149--33207557 Score: 665
Period size: 47 Copynumber: 8.6 Consensus size: 47
33207139 CCCTTCGGGA
* * * * * *
33207149 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
33207196 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33207243 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
33207290 CTTACCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
33207337 CTTATCACATATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33207386 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33207433 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
33207482 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33207531 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
33207558 ACCAACCCTT
Statistics
Matches: 342, Mismatches: 16, Indels: 8
0.93 0.04 0.02
Matches are distributed among these distances:
47 202 0.59
49 140 0.41
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:33207380 original size:96 final size:96
Alignment explanation
Indices: 33207149--33207557 Score: 650
Period size: 96 Copynumber: 4.3 Consensus size: 96
33207139 CCCTTCGGGA
* * * * * **
33207149 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTACCACATATATAC
33207212 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
33207243 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTACCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTACCACATATATAC
33207306 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* * *
33207337 CTTATCACATATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTACCACATATATAC
33207402 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
33207433 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTA-C-CACATATAT
33207498 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
33207531 CTTATCAC--ATATATACACTTTCACATT
1 CTTATCACATATATATACACTTTCACATT
33207558 ACCAACCCTT
Statistics
Matches: 295, Mismatches: 14, Indels: 10
0.92 0.04 0.03
Matches are distributed among these distances:
93 1 0.00
94 91 0.31
96 154 0.52
98 49 0.17
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTACCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:33207854 original size:40 final size:40
Alignment explanation
Indices: 33207782--33207966 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
33207772 GCTACTCGTT
* * *
33207782 CAAATGCCTTCAGGACATAGCCTGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
33207822 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
33207862 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * ** *
33207901 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCATTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AACTCGCA
33207942 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
33207967 CATCATTCGA
Statistics
Matches: 126, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.26
40 76 0.60
41 15 0.12
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:33207900 original size:79 final size:80
Alignment explanation
Indices: 33207810--33207966 Score: 203
Period size: 79 Copynumber: 2.0 Consensus size: 80
33207800 AGCCTGGTTA
* *
33207810 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATTTAGT-AACTCGCACAAATGCCTTC
1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGATATAGTCAACTAGCACAAA-GCCTTC
33207873 GGG-CTTAGCCCGGAAT
64 GGGACTTAGCCCGGAAT
* ** * **
33207889 TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGATATGGTCATTTAGCACAAAGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAGTCAACTAGCACAAAGCCTTCGG
33207954 GACTTAGCCCGGA
66 GACTTAGCCCGGA
33207967 CATCATTCGA
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
78 3 0.04
79 44 0.66
80 20 0.30
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAGTCAACTAGCACAAAGCCTTCGG
GACTTAGCCCGGAAT
Found at i:33210799 original size:14 final size:14
Alignment explanation
Indices: 33210780--33210814 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
33210770 TCACATTTCT
*
33210780 ACTCATCCCTTATC
1 ACTCATCCCTCATC
33210794 ACTCATCCCTCATC
1 ACTCATCCCTCATC
*
33210808 ATTCATC
1 ACTCATC
33210815 ATTCTCTCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.23, C:0.43, G:0.00, T:0.34
Consensus pattern (14 bp):
ACTCATCCCTCATC
Found at i:33212055 original size:44 final size:44
Alignment explanation
Indices: 33212006--33212102 Score: 149
Period size: 44 Copynumber: 2.2 Consensus size: 44
33211996 ATTTGCGCAA
* *
33212006 AGCCATAATCAACATAGCACAAAGCCATATTTAGGTTGACATAG
1 AGCCATAATAAACATAGCACAAAGCCATATTTAGGTTGACACAG
* * *
33212050 AGCCATAATAAACATAGCACAGAGCCTTATTTAGGTTGGCACAG
1 AGCCATAATAAACATAGCACAAAGCCATATTTAGGTTGACACAG
33212094 AGCCATAAT
1 AGCCATAAT
33212103 TAGATTAAGC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 48 1.00
ACGTcount: A:0.39, C:0.21, G:0.18, T:0.23
Consensus pattern (44 bp):
AGCCATAATAAACATAGCACAAAGCCATATTTAGGTTGACACAG
Found at i:33212105 original size:22 final size:22
Alignment explanation
Indices: 33212022--33212105 Score: 69
Period size: 22 Copynumber: 3.8 Consensus size: 22
33212012 AATCAACATA
* *
33212022 GCACAAAGCCATATTTAGGTTG
1 GCACAGAGCCATAATTAGGTTG
* * * *** *
33212044 ACATAGAGCCATAATAAACATA
1 GCACAGAGCCATAATTAGGTTG
* *
33212066 GCACAGAGCCTTATTTAGGTTG
1 GCACAGAGCCATAATTAGGTTG
33212088 GCACAGAGCCATAATTAG
1 GCACAGAGCCATAATTAG
33212106 ATTAAGCAGC
Statistics
Matches: 42, Mismatches: 20, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
22 42 1.00
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Consensus pattern (22 bp):
GCACAGAGCCATAATTAGGTTG
Found at i:33212421 original size:27 final size:27
Alignment explanation
Indices: 33212377--33212438 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 27
33212367 CAAAACAATC
* * *
33212377 ATTTTACCCTATAGGGGTATTTCAG-TA
1 ATTTTACACTACAAGGGTATTT-AGATA
* *
33212404 ATTTTACACTACAAGGGTCTTTTGATA
1 ATTTTACACTACAAGGGTATTTAGATA
33212431 ATTTTACA
1 ATTTTACA
33212439 AATTGGGGGT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
26 1 0.03
27 28 0.97
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.42
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTAGATA
Found at i:33212448 original size:27 final size:27
Alignment explanation
Indices: 33212418--33212802 Score: 320
Period size: 27 Copynumber: 14.3 Consensus size: 27
33212408 TACACTACAA
* * *
33212418 GGGTCTTTTGATAATTTTACAAATTGG
1 GGGTATTTCGATAATTTTACAAATCGG
* * * **
33212445 GGGTATTTCAATAATTTAACAAACCAA
1 GGGTATTTCGATAATTTTACAAATCGG
*
33212472 GGGTATTTCGATAATTTTACAAATCGA
1 GGGTATTTCGATAATTTTACAAATCGG
* *
33212499 GGGTATTTTCG-TAATTTCACAAATTGG
1 GGGTA-TTTCGATAATTTTACAAATCGG
* *
33212526 GGGTATTTTC-ATAATTTCACAAATCAG
1 GGGTA-TTTCGATAATTTTACAAATCGG
* *
33212553 GGGTATCTCGAAAATTTTACAAA-CTGG
1 GGGTATTTCGATAATTTTACAAATC-GG
*
33212580 GGGTATTTCGATAATTTTACAAATCGA
1 GGGTATTTCGATAATTTTACAAATCGG
* *
33212607 GCGTATTTC-AGTAATTTTA-AAGATCAG
1 GGGTATTTCGA-TAATTTTACAA-ATCGG
** *
33212634 GGGTATTTTTATAATTTTACAAATC-A
1 GGGTATTTCGATAATTTTACAAATCGG
*
33212660 GGGTATTTCGGTAATTTTACAAATCGG
1 GGGTATTTCGATAATTTTACAAATCGG
* *
33212687 GGGTATTTCGATGATTTTACAAACTC-A
1 GGGTATTTCGATAATTTTACAAA-TCGG
* * *
33212714 AGGTATTTCGGTAATTTTACAAACTC-A
1 GGGTATTTCGATAATTTTACAAA-TCGG
* * * **
33212741 AGGTATTTCAATAATTTCACAAATAAG
1 GGGTATTTCGATAATTTTACAAATCGG
* *
33212768 GGGTATTT-GTGTAATTTTACAAACCGG
1 GGGTATTTCG-ATAATTTTACAAATCGG
*
33212795 GGGCATTT
1 GGGTATTT
33212803 TAGTAATTTA
Statistics
Matches: 292, Mismatches: 53, Indels: 26
0.79 0.14 0.07
Matches are distributed among these distances:
26 30 0.10
27 251 0.86
28 11 0.04
ACGTcount: A:0.32, C:0.12, G:0.19, T:0.37
Consensus pattern (27 bp):
GGGTATTTCGATAATTTTACAAATCGG
Found at i:33212502 original size:81 final size:81
Alignment explanation
Indices: 33212391--33212775 Score: 356
Period size: 81 Copynumber: 4.8 Consensus size: 81
33212381 TACCCTATAG
* * * * *
33212391 GGGTATTTC-AGTAATTTTAC-ACTACAAGGGTCTTTTGATAATTTTACAAATTGGGGGTATTTC
1 GGGTATTTCGA-TAATTTTACAAAT-CGAGGGTATTTCGATAATTTTACAAATCGGGGGTATTTC
33212454 AATAATTTAACAAACCAA
64 AATAATTTAACAAACCAA
* *
33212472 GGGTATTTCGATAATTTTACAAATCGAGGGTATTTTCG-TAATTTCACAAATTGGGGGTATTTTC
1 GGGTATTTCGATAATTTTACAAATCGAGGGTA-TTTCGATAATTTTACAAATCGGGGGTA-TTTC
* * *
33212536 -ATAATTTCACAAATCAG
64 AATAATTTAACAAACCAA
* * * * *
33212553 GGGTATCTCGAAAATTTTACAAA-CTGGGGGTATTTCGATAATTTTACAAATCGAGCGTATTTCA
1 GGGTATTTCGATAATTTTACAAATC-GAGGGTATTTCGATAATTTTACAAATCGGGGGTATTTCA
* * * *
33212617 GTAATTTTAA-AGATCAG
65 ATAA-TTTAACAAACCAA
** * *
33212634 GGGTATTTTTATAATTTTACAAATC-AGGGTATTTCGGTAATTTTACAAATCGGGGGTATTTCGA
1 GGGTATTTCGATAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGGGGGTATTTCAA
* *
33212698 TGATTTTACAAACTCAA
66 TAATTTAACAAAC-CAA
* * * * **
33212715 -GGTATTTCGGTAATTTTACAAACTC-AAGGTATTTCAATAATTTCACAAATAAGGGGTATTT
1 GGGTATTTCGATAATTTTACAAA-TCGAGGGTATTTCGATAATTTTACAAATCGGGGGTATTT
33212776 GTGTAATTTT
Statistics
Matches: 250, Mismatches: 42, Indels: 24
0.79 0.13 0.08
Matches are distributed among these distances:
79 4 0.02
80 66 0.26
81 164 0.66
82 16 0.06
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.37
Consensus pattern (81 bp):
GGGTATTTCGATAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGGGGGTATTTCAA
TAATTTAACAAACCAA
Found at i:33214185 original size:24 final size:24
Alignment explanation
Indices: 33214158--33214223 Score: 71
Period size: 24 Copynumber: 2.8 Consensus size: 24
33214148 TCCTTAAATA
* **
33214158 TCTCCATAAATCACTCCTTGATTT
1 TCTCCATAAATCACTCCATGATAC
*
33214182 TCT-CATAATATCTCTCCATGATAC
1 TCTCCATAA-ATCACTCCATGATAC
*
33214206 ACTCCATAAATCACTCCA
1 TCTCCATAAATCACTCCA
33214224 ACCTCCCGTT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
23 5 0.15
24 24 0.71
25 5 0.15
ACGTcount: A:0.30, C:0.32, G:0.03, T:0.35
Consensus pattern (24 bp):
TCTCCATAAATCACTCCATGATAC
Found at i:33220874 original size:79 final size:81
Alignment explanation
Indices: 33220738--33220920 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
33220728 TCGAATGATG
* *
33220738 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
33220802 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
33220817 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
33220879 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
33220897 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
33220921 TGATCGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:33220936 original size:40 final size:40
Alignment explanation
Indices: 33220739--33220922 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
33220729 CGAATGATGT
* * * *
33220739 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
33220779 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
33220819 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
33220857 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
33220898 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
33220923 ATCGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:33220944 original size:79 final size:79
Alignment explanation
Indices: 33220739--33220955 Score: 203
Period size: 79 Copynumber: 2.7 Consensus size: 79
33220729 CGAATGATGT
* * * * * **
33220739 CCGGGCTAAGTCCCGAAGGCTTTG-TGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTGATGC-GAGTTACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
33220802 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
* *
33220819 CCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTGATGCGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
33220884 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
33220898 CCGGGCTATGTCCCGAAGGCATTTGAT-CGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCA-TTGATGCGAGTTA-CTAAATCCGGGTTAAATCCCGAAGG
33220956 TACGTGATTT
Statistics
Matches: 116, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
78 3 0.03
79 75 0.65
80 34 0.29
81 4 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTGATGCGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:33223983 original size:43 final size:43
Alignment explanation
Indices: 33223913--33223996 Score: 105
Period size: 43 Copynumber: 2.0 Consensus size: 43
33223903 CACATCTATC
* * ** * *
33223913 GCATCCATCATGAACTCGGACCACTCAATGAGCTCGGATGCTT
1 GCATCCATAACGAACTCAAACCACTCAACGAGCTCGAATGCTT
*
33223956 GCATCCATAACGAACTCAAACCTCTCAACGAGCTCGAATGC
1 GCATCCATAACGAACTCAAACCACTCAACGAGCTCGAATGC
33223997 CACATATATC
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.30, C:0.32, G:0.18, T:0.20
Consensus pattern (43 bp):
GCATCCATAACGAACTCAAACCACTCAACGAGCTCGAATGCTT
Found at i:33225375 original size:47 final size:47
Alignment explanation
Indices: 33225268--33225377 Score: 159
Period size: 47 Copynumber: 2.3 Consensus size: 47
33225258 CAGATTTACA
33225268 CCCATAGCCAAATCAAGGTAACTCATCCCGAAGTACCTATACCATGG
1 CCCATAGCCAAATCAAGGTAACTCATCCCGAAGTACCTATACCATGG
* * * * *
33225315 CCCGTAACAAAATCAAGGTAACTCCTCTCTGAA-TACCTATACCATGG
1 CCCATAGCCAAATCAAGGTAACTCATC-CCGAAGTACCTATACCATGG
33225362 CCCATAGCCAAATCAA
1 CCCATAGCCAAATCAA
33225378 CGTATTATCT
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
47 50 0.93
48 4 0.07
ACGTcount: A:0.35, C:0.32, G:0.13, T:0.20
Consensus pattern (47 bp):
CCCATAGCCAAATCAAGGTAACTCATCCCGAAGTACCTATACCATGG
Found at i:33228982 original size:9 final size:9
Alignment explanation
Indices: 33228968--33228993 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
33228958 CAATTCTCAA
33228968 ATGCTCAGC
1 ATGCTCAGC
33228977 ATGCTCAGC
1 ATGCTCAGC
33228986 ATGCTCAG
1 ATGCTCAG
33228994 TTTCATCTCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.23, C:0.31, G:0.23, T:0.23
Consensus pattern (9 bp):
ATGCTCAGC
Found at i:33232265 original size:11 final size:11
Alignment explanation
Indices: 33232234--33232279 Score: 53
Period size: 11 Copynumber: 4.5 Consensus size: 11
33232224 ATGAATATAG
33232234 CATGTGCATAT
1 CATGTGCATAT
*
33232245 CA--TACATAT
1 CATGTGCATAT
33232254 CATGTGCATAT
1 CATGTGCATAT
*
33232265 CATGT-CAAAT
1 CATGTGCATAT
33232275 CATGT
1 CATGT
33232280 ATATCAAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
9 8 0.27
10 9 0.30
11 13 0.43
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.35
Consensus pattern (11 bp):
CATGTGCATAT
Found at i:33236107 original size:53 final size:53
Alignment explanation
Indices: 33236050--33236352 Score: 322
Period size: 55 Copynumber: 5.6 Consensus size: 53
33236040 CTTACCATTT
* ** * *
33236050 CCATGTCTTGACATGGTCTTATGTGGTATCCTTGCCATATGAACTCACCAATG
1 CCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCATCAATG
* * * *
33236103 CCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAATAACTCATCAAAG
1 CCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT--GAACTCATCAATG
* **
33236158 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCAAAAATG
1 CCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCATCAATG
* * *
33236211 CCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACCCATCAATG
1 CCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-G-AACTCATCAATG
* * * * * *
33236266 CCATGTCTTAACATGGTCTTACATGATTTCCTTGCCTTATAAAACTTATCAATG
1 CCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAACTCATCAATG
* *
33236320 CCATGCCTTGCCATGGTCTTACATGATATCCTT
1 CCATGCCTTGACATGGTCTTACATGGTATCCTT
33236353 ATCTTACCAA
Statistics
Matches: 207, Mismatches: 35, Indels: 15
0.81 0.14 0.06
Matches are distributed among these distances:
52 4 0.02
53 74 0.36
54 40 0.19
55 85 0.41
56 4 0.02
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.34
Consensus pattern (53 bp):
CCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCATCAATG
Found at i:33236239 original size:108 final size:108
Alignment explanation
Indices: 33236050--33236344 Score: 446
Period size: 108 Copynumber: 2.7 Consensus size: 108
33236040 CTTACCATTT
** * *
33236050 CCATGTCTTGACATGGTCTTATGTGGTATCCTTGCCATATGAACTCACCAATGCCATGCCTTGGC
1 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCAACAATGCCATGCCTTGGC
*
33236115 ATGGTCTTACATGGGACCTTTGCCTTATAATAACTCATCAAAG
66 ATGGTCTTACATGGGACCTTTGCCTTATAATAACCCATCAAAG
*
33236158 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCAAAAATGCCATGCCTTGGC
1 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCAACAATGCCATGCCTTGGC
* *
33236223 ATGGTCTTACATGGGACCTTTGCCTTATAGTAACCCATCAATG
66 ATGGTCTTACATGGGACCTTTGCCTTATAATAACCCATCAAAG
* * * * * * *
33236266 CCATGTCTTAACATGGTCTTACATGATTTCCTTGCCTTATAAAACTTATCAATGCCATGCCTTGC
1 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAACTCAACAATGCCATGCCTTGG
33236331 CATGGTCTTACATG
65 CATGGTCTTACATG
33236345 ATATCCTTAT
Statistics
Matches: 170, Mismatches: 16, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
108 137 0.81
109 33 0.19
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.34
Consensus pattern (108 bp):
CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCAACAATGCCATGCCTTGGC
ATGGTCTTACATGGGACCTTTGCCTTATAATAACCCATCAAAG
Found at i:33241794 original size:40 final size:40
Alignment explanation
Indices: 33241737--33241966 Score: 336
Period size: 40 Copynumber: 5.8 Consensus size: 40
33241727 ATTTGAATAC
* * * *
33241737 ATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTTT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGA-TAT
33241777 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
33241817 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* *
33241857 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGATGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* * *
33241897 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* * *
33241937 ACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
33241967 TTGTGGTTAT
Statistics
Matches: 176, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
40 173 0.98
41 3 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
Found at i:33250327 original size:40 final size:40
Alignment explanation
Indices: 33250270--33250499 Score: 336
Period size: 40 Copynumber: 5.8 Consensus size: 40
33250260 ATTTGAATAC
* * * *
33250270 ATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTTT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGA-TAT
33250310 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
33250350 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* *
33250390 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGATGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* * *
33250430 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* * *
33250470 ACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
33250500 TTGTGGTTAT
Statistics
Matches: 176, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
40 173 0.98
41 3 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
Found at i:33255917 original size:46 final size:46
Alignment explanation
Indices: 33255850--33256016 Score: 198
Period size: 46 Copynumber: 3.6 Consensus size: 46
33255840 TGTAACCCGC
33255850 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
33255896 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * ** *
33255946 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
33255989 CCATAAGTGAACTCGGACTCAACTCAAC
1 CCATAAGTGAACTCGGACTCAACTCAAC
33256017 AAGTTCAGAT
Statistics
Matches: 102, Mismatches: 10, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 56 0.55
47 26 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.31, G:0.19, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:33256028 original size:93 final size:93
Alignment explanation
Indices: 33255858--33256028 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
33255848 GCCCATAAGT
** *
33255858 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
33255923 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CAAGCTCAGATGCCTAGTTACATCTCAC
*
33255951 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
33256016 CAAGTTCAGATGC
66 CAAGCTCAGATGC
33256029 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CAAGCTCAGATGCCTAGTTACATCTCAC
Found at i:33256044 original size:46 final size:45
Alignment explanation
Indices: 33255951--33256036 Score: 111
Period size: 46 Copynumber: 1.9 Consensus size: 45
33255941 TACATCTCAC
* * *
33255951 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACAAGTTC-AACATGCGCAACCATAAGT
* *
33255997 GAACTCGGACTCAACTCAACAAGTTC-AGATGCTCAACCAT
1 GAACTCGGACTCAACTCAACAAGTTCAACATGCGCAACCAT
33256037 CCTAGTGACA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
44 10 0.29
46 25 0.71
ACGTcount: A:0.34, C:0.29, G:0.16, T:0.21
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACAAGTTCAACATGCGCAACCATAAGT
Found at i:33259514 original size:44 final size:43
Alignment explanation
Indices: 33259412--33259554 Score: 137
Period size: 46 Copynumber: 3.2 Consensus size: 43
33259402 GTCGATGTTG
* * * *
33259412 TGTCCCAGACAGGTCTTACACTGACACATGTAACCGT-GCTGACGCA
1 TGTCCCAGACATGTCTTACACTG-CACATCT---CGTAGCCGATGCA
33259458 TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGATGCA
1 TGTCCCAGACATGTCTTACACT-GCACATCTCGTAGCCGATGCA
* *
33259502 TGTCCCAGACATGTCTGACATTGGCTATCATCTCG-AGGCCGATGCA
1 TGTCCCAGACATGTCTTACACT-GC-A-CATCTCGTA-GCCGATGCA
33259548 TGTCCCA
1 TGTCCCA
33259555 TCCATGGTTT
Statistics
Matches: 85, Mismatches: 7, Indels: 10
0.83 0.07 0.10
Matches are distributed among these distances:
43 3 0.04
44 29 0.34
45 2 0.02
46 50 0.59
47 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (43 bp):
TGTCCCAGACATGTCTTACACTGCACATCTCGTAGCCGATGCA
Found at i:33262145 original size:46 final size:46
Alignment explanation
Indices: 33262078--33262244 Score: 198
Period size: 46 Copynumber: 3.6 Consensus size: 46
33262068 TGTAACCCGC
33262078 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
33262124 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * ** *
33262174 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
33262217 CCATAAGTGAACTCGGACTCAACTCAAC
1 CCATAAGTGAACTCGGACTCAACTCAAC
33262245 AAGTTCAGAT
Statistics
Matches: 102, Mismatches: 10, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 56 0.55
47 26 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.31, G:0.19, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:33262256 original size:93 final size:93
Alignment explanation
Indices: 33262086--33262256 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
33262076 GCCCATAAGT
** *
33262086 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
33262151 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CAAGCTCAGATGCCTAGTTACATCTCAC
*
33262179 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
33262244 CAAGTTCAGATGC
66 CAAGCTCAGATGC
33262257 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CAAGCTCAGATGCCTAGTTACATCTCAC
Found at i:33262272 original size:46 final size:45
Alignment explanation
Indices: 33262179--33262264 Score: 111
Period size: 46 Copynumber: 1.9 Consensus size: 45
33262169 TACATCTCAC
* * *
33262179 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACAAGTTC-AACATGCGCAACCATAAGT
* *
33262225 GAACTCGGACTCAACTCAACAAGTTC-AGATGCTCAACCAT
1 GAACTCGGACTCAACTCAACAAGTTCAACATGCGCAACCAT
33262265 CCTAGTGACA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
44 10 0.29
46 25 0.71
ACGTcount: A:0.34, C:0.29, G:0.16, T:0.21
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACAAGTTCAACATGCGCAACCATAAGT
Found at i:33264220 original size:55 final size:53
Alignment explanation
Indices: 33264097--33264392 Score: 348
Period size: 55 Copynumber: 5.5 Consensus size: 53
33264087 CTTACCATTT
* *
33264097 CCATGTCTTGACATGGTCTTACGT-AGTATCATTGCCTTAT-GAACTCACCAATG
1 CCATGTCTTGACATGGTCTTACATGAG-A-CCTTGCCTTATAGAACTCACCAATG
* * *
33264150 CCATGCCTTGGCATGGTCTTACATGAGACCTTTGCCTTATAGTAACTCAGCAATG
1 CCATGTCTTGACATGGTCTTACATGAGACC-TTGCCTTATAG-AACTCACCAATG
33264205 CCATGTCTTGACATGGTCTTACATG-GTATCCTTGCCTTAT-GAACTCACCAATG
1 CCATGTCTTGACATGGTCTTACATGAG-A-CCTTGCCTTATAGAACTCACCAATG
* * *
33264258 CTATGTCTTGGCATGGTCTTACATGAGACCTTTGCCTTATAGTAACTCATCAATG
1 CCATGTCTTGACATGGTCTTACATGAGACC-TTGCCTTATAG-AACTCACCAATG
* ** * *
33264313 TCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATG
1 CCATGTCTTGACATGGTCTTACATGA-GACCTTGCCTTATAGAACTCACCAATG
* *
33264367 CCATGCCTTGGCATGGTCTTACATGA
1 CCATGTCTTGACATGGTCTTACATGA
33264393 TATCCTTATC
Statistics
Matches: 212, Mismatches: 20, Indels: 21
0.84 0.08 0.08
Matches are distributed among these distances:
52 3 0.01
53 75 0.35
54 41 0.19
55 89 0.42
56 4 0.02
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (53 bp):
CCATGTCTTGACATGGTCTTACATGAGACCTTGCCTTATAGAACTCACCAATG
Found at i:33264286 original size:108 final size:108
Alignment explanation
Indices: 33264097--33264392 Score: 484
Period size: 108 Copynumber: 2.7 Consensus size: 108
33264087 CTTACCATTT
* * *
33264097 CCATGTCTTGACATGGTCTTACGTAGTATCATTGCCTTATGAACTCACCAATGCCATGCCTTGGC
1 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGC
33264162 ATGGTCTTACATGAGACCTTTGCCTTATAGTAACTCAGCAATG
66 ATGGTCTTACATGAGACCTTTGCCTTATAGTAACTCAGCAATG
* *
33264205 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCTATGTCTTGGC
1 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGC
*
33264270 ATGGTCTTACATGAGACCTTTGCCTTATAGTAACTCATCAATG
66 ATGGTCTTACATGAGACCTTTGCCTTATAGTAACTCAGCAATG
* * * * *
33264313 TCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGG
1 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAACTCACCAATGCCATGCCTTGG
33264378 CATGGTCTTACATGA
65 CATGGTCTTACATGA
33264393 TATCCTTATC
Statistics
Matches: 174, Mismatches: 13, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
108 139 0.80
109 35 0.20
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (108 bp):
CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGC
ATGGTCTTACATGAGACCTTTGCCTTATAGTAACTCAGCAATG
Found at i:33271966 original size:43 final size:43
Alignment explanation
Indices: 33271918--33272079 Score: 136
Period size: 43 Copynumber: 3.8 Consensus size: 43
33271908 AGCATATATA
* * *
33271918 ATGCCAACGTCCCAAACGTGGTCTTACATGCAATCA-AACATTG
1 ATGCCAACGTCCCAAACATGGTCTTACACGAAATCAGAACA-TG
* *
33271961 ATGCC-ACTGTCCCAGACAAGGTCTTACACGAAATCAGATACA--
1 ATGCCAAC-GTCCCAAACATGGTCTTACACGAAATCAGA-ACATG
* * * * * *
33272003 ATGTCGATGTCCCAGACATGGTCTTACACGTAAAACAGAA-GTCG
1 ATGCCAACGTCCCAAACATGGTCTTACACG-AAATCAGAACAT-G
*
33272047 ATGCCAACGTCCCAAACGTGGTCTTACACGAAA
1 ATGCCAACGTCCCAAACATGGTCTTACACGAAA
33272080 ACACATATCG
Statistics
Matches: 96, Mismatches: 15, Indels: 16
0.76 0.12 0.13
Matches are distributed among these distances:
42 28 0.29
43 39 0.41
44 26 0.27
45 3 0.03
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.21
Consensus pattern (43 bp):
ATGCCAACGTCCCAAACATGGTCTTACACGAAATCAGAACATG
Found at i:33278061 original size:29 final size:29
Alignment explanation
Indices: 33278022--33278109 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
33278012 CAAAGATAAC
*
33278022 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
33278051 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
33278080 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
33278110 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:33278080 original size:15 final size:15
Alignment explanation
Indices: 33278022--33278100 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
33278012 CAAAGATAAC
*
33278022 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
33278036 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
33278051 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
33278065 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
33278080 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
33278095 AAGAAA
1 AAGAAA
33278101 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:33278109 original size:15 final size:15
Alignment explanation
Indices: 33278033--33278109 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
33278023 AGAAAACCGA
33278033 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
33278048 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
33278062 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
33278076 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
33278092 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
33278107 ATA
1 ATA
33278110 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:33282549 original size:27 final size:27
Alignment explanation
Indices: 33282488--33282862 Score: 276
Period size: 27 Copynumber: 13.9 Consensus size: 27
33282478 TAGGCTAGTG
*
33282488 TTACTGAAATACCCTCGA-TTGTGAAA
1 TTACTGAAATACCCTCGATTTGTAAAA
* *
33282514 TTACTGAAATACCCTCAATTTGTGAAA
1 TTACTGAAATACCCTCGATTTGTAAAA
* * *
33282541 CTACCGAAATACCCCCGATTTGTAAAA
1 TTACTGAAATACCCTCGATTTGTAAAA
* *
33282568 TTATTGAAACACCCTCGATTTGTAAAA
1 TTACTGAAATACCCTCGATTTGTAAAA
* *** *
33282595 TTACTGAAACATTGTCAATTTGTAAAA
1 TTACTGAAATACCCTCGATTTGTAAAA
*
33282622 TTA-TCGAAATACCCTCGATTTTTAAAA
1 TTACT-GAAATACCCTCGATTTGTAAAA
33282649 TTACTGAAATACCCTCGATTTGTAAAA
1 TTACTGAAATACCCTCGATTTGTAAAA
*
33282676 TTA-TCGAAATACCCTCAATTTGTAAAA
1 TTACT-GAAATACCCTCGATTTGTAAAA
* * *
33282703 TTA-TAAAAATACCC-CTAATTTGGAAAA
1 TTACT-GAAATACCCTC-GATTTGTAAAA
** * * *
33282730 TTACCAAAATATCCTTGATTTGGAAAA
1 TTACTGAAATACCCTCGATTTGTAAAA
* * **
33282757 TTA-TAGAAATACCCTTGGTTTACAAAA
1 TTACT-GAAATACCCTCGATTTGTAAAA
** ** * **
33282784 TTACAAAAATACATTTGACTTTCAAAAA
1 TTACTGAAATACCCTCGA-TTTGTAAAA
* * * * * *
33282812 TTAATAAAATACCATTGGTTTGCAAAA
1 TTACTGAAATACCCTCGATTTGTAAAA
* *
33282839 TTACTGAAATACCCTTGGTTTGTA
1 TTACTGAAATACCCTCGATTTGTA
33282863 GATTTACCAA
Statistics
Matches: 284, Mismatches: 55, Indels: 19
0.79 0.15 0.05
Matches are distributed among these distances:
26 20 0.07
27 243 0.86
28 21 0.07
ACGTcount: A:0.39, C:0.17, G:0.10, T:0.33
Consensus pattern (27 bp):
TTACTGAAATACCCTCGATTTGTAAAA
Found at i:33282946 original size:26 final size:27
Alignment explanation
Indices: 33282904--33282972 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
33282894 GACTAAAATA
*
33282904 CCCCTAATA-GGTAAAA-AGACCGTAATG
1 CCCCT-ATAGGGTAAAATA-ACCGTAAAG
33282931 CCCCTATAGGGTAAAATAACCGTAAAG
1 CCCCTATAGGGTAAAATAACCGTAAAG
* *
33282958 CCCTTGTAGGGTAAA
1 CCCCTATAGGGTAAA
33282973 GTGACAGTGA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
26 3 0.08
27 33 0.89
28 1 0.03
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.20
Consensus pattern (27 bp):
CCCCTATAGGGTAAAATAACCGTAAAG
Found at i:33283231 original size:27 final size:27
Alignment explanation
Indices: 33283145--33283231 Score: 97
Period size: 27 Copynumber: 3.2 Consensus size: 27
33283135 GGAAGTTCTG
* *
33283145 TACTGGTGACTATGACAC-ATTCACTGT
1 TACTGGTGGCTATGCCACAATT-ACTGT
*
33283172 TACTGGTGGCTATGCCACAATTACTGA
1 TACTGGTGGCTATGCCACAATTACTGT
*
33283199 TACTGGTGGCTTTGCCA-AATTTACTGT
1 TACTGGTGGCTATGCCACAA-TTACTGT
*
33283226 TTCTGG
1 TACTGG
33283232 CAACTATGCT
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
26 2 0.04
27 47 0.90
28 3 0.06
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.36
Consensus pattern (27 bp):
TACTGGTGGCTATGCCACAATTACTGT
Found at i:33283337 original size:21 final size:21
Alignment explanation
Indices: 33283313--33283356 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
33283303 TCTCCCCACA
*
33283313 TGGTGTGTTGGTTGGTACGGG
1 TGGTGTGCTGGTTGGTACGGG
33283334 TGGTGTGCTGGTTGGTACGGG
1 TGGTGTGCTGGTTGGTACGGG
33283355 TG
1 TG
33283357 AGATGCATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.05, C:0.07, G:0.52, T:0.36
Consensus pattern (21 bp):
TGGTGTGCTGGTTGGTACGGG
Found at i:33283462 original size:33 final size:34
Alignment explanation
Indices: 33283414--33283484 Score: 108
Period size: 33 Copynumber: 2.1 Consensus size: 34
33283404 TTAGGCCCAC
* * *
33283414 ACTGCTACTGTATAGGGCTTAGGCCCAGACTG-T
1 ACTGATACTGAATAGGGCTAAGGCCCAGACTGTT
33283447 ACTGATACTGAATAGGGCTAAGGCCCAGACTGTT
1 ACTGATACTGAATAGGGCTAAGGCCCAGACTGTT
33283481 ACTG
1 ACTG
33283485 CATGCACTGT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
33 29 0.85
34 5 0.15
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (34 bp):
ACTGATACTGAATAGGGCTAAGGCCCAGACTGTT
Found at i:33283483 original size:28 final size:28
Alignment explanation
Indices: 33283388--33283484 Score: 95
Period size: 28 Copynumber: 3.3 Consensus size: 28
33283378 CATACTGTAT
* * *
33283388 TGTTACTGCATTGGGCTTAGGCCCACAC
1 TGTTACTGAATAGGGCTTAGGCCCAGAC
* *
33283416 TGCTACTGTATAGGGCTTAGGCCCAGAC
1 TGTTACTGAATAGGGCTTAGGCCCAGAC
*
33283444 TGTACTGATACTGAATAGGGCTAAGGCCCAGAC
1 TG---T--TACTGAATAGGGCTTAGGCCCAGAC
33283477 TGTTACTG
1 TGTTACTG
33283485 CATGCACTGT
Statistics
Matches: 57, Mismatches: 7, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
28 31 0.54
30 1 0.02
33 25 0.44
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.27
Consensus pattern (28 bp):
TGTTACTGAATAGGGCTTAGGCCCAGAC
Found at i:33297887 original size:47 final size:47
Alignment explanation
Indices: 33297812--33297939 Score: 168
Period size: 47 Copynumber: 2.7 Consensus size: 47
33297802 TCAATCGATA
* *
33297812 AGTACCTATACCATGGCCCATAGGCAAATCAAGGTAACTT-ATCCCGG
1 AGTACCTATACCATGGCCTATAGCCAAATCAAGGTAA-TTCATCCCGG
* * * *
33297859 AGTACCTATACCATGGCCTATAACCAAATCAAGGTAATTCCTCTCTG
1 AGTACCTATACCATGGCCTATAGCCAAATCAAGGTAATTCATCCCGG
* *
33297906 AATACCTATACCATGGCCTGTAGCCAAATCAAGG
1 AGTACCTATACCATGGCCTATAGCCAAATCAAGG
33297940 ATTATTTGCA
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
46 2 0.03
47 69 0.97
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.23
Consensus pattern (47 bp):
AGTACCTATACCATGGCCTATAGCCAAATCAAGGTAATTCATCCCGG
Found at i:33302355 original size:27 final size:27
Alignment explanation
Indices: 33302215--33302359 Score: 155
Period size: 27 Copynumber: 5.4 Consensus size: 27
33302205 GGCATAATCA
* * *
33302215 TCATTTTACCATACAGGGGTATTACAG
1 TCATTTTACCCTACAGGGGCATTACGG
* * * *
33302242 TTATCTTACCCTACAGGGCCATTACAG
1 TCATTTTACCCTACAGGGGCATTACGG
* * *
33302269 TCATTTTACCCTACAGGGACATTTCGA
1 TCATTTTACCCTACAGGGGCATTACGG
* *
33302296 CCATTTTACCCTACAGAGGCATTACGG
1 TCATTTTACCCTACAGGGGCATTACGG
* * *
33302323 TTATTTTACCCTATAGGGGCATTATGG
1 TCATTTTACCCTACAGGGGCATTACGG
33302350 TCATTTTACC
1 TCATTTTACC
33302360 TATTATGGGG
Statistics
Matches: 96, Mismatches: 22, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 96 1.00
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.34
Consensus pattern (27 bp):
TCATTTTACCCTACAGGGGCATTACGG
Found at i:33303558 original size:24 final size:23
Alignment explanation
Indices: 33303531--33303588 Score: 59
Period size: 24 Copynumber: 2.6 Consensus size: 23
33303521 ACTCATCAAA
33303531 CTCCTAATTCCTCTCCACAAATCT
1 CTCCTAATTCCTCTCCACAAA-CT
* *
33303555 CTCCCCAA-TCCTTTCCACAAACT
1 CT-CCTAATTCCTCTCCACAAACT
33303578 CT--TAATTCCTC
1 CTCCTAATTCCTC
33303589 CTTGATATCC
Statistics
Matches: 28, Mismatches: 4, Indels: 7
0.72 0.10 0.18
Matches are distributed among these distances:
20 2 0.07
21 4 0.14
23 4 0.14
24 14 0.50
25 4 0.14
ACGTcount: A:0.24, C:0.43, G:0.00, T:0.33
Consensus pattern (23 bp):
CTCCTAATTCCTCTCCACAAACT
Found at i:33312031 original size:40 final size:40
Alignment explanation
Indices: 33312001--33312226 Score: 253
Period size: 40 Copynumber: 5.7 Consensus size: 40
33311991 GCTACTCGTT
* *
33312001 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
33312041 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACCCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
33312081 CAAATGCCTTCGAGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** *
33312121 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
* ** * * * *
33312161 CAAATGTCTTC-GGATCTTAGTCCGGATATGGTCACCTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGT-AACTCGCA
*
33312202 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
33312227 CATCATTCAA
Statistics
Matches: 165, Mismatches: 17, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
39 2 0.01
40 149 0.90
41 14 0.08
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:33312210 original size:120 final size:120
Alignment explanation
Indices: 33312001--33312226 Score: 280
Period size: 120 Copynumber: 1.9 Consensus size: 120
33311991 GCTACTCGTT
33312001 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
33312066 ATTTAGTAACCCGCACAAATGCCTTCGAGACTTAACCCGGATTTAGTAACTCGCA
66 ATATAGTAACCAGCACAAATGCCTTCGAGACTTAACCCGGATTTAGTAACTCGCA
* * * * **
33312121 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTAACTCGTACAAATGTCTTC-GGATCTTAGTC
1 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACC
* * * *
33312183 CGGATATGGTCACCTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
63 CGGATATAGTAACC-AGCACAAATGCCTTCGAGACTTAACCCGGA
33312227 CATCATTCAA
Statistics
Matches: 90, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
119 6 0.07
120 75 0.83
121 9 0.10
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACCAGCACAAATGCCTTCGAGACTTAACCCGGATTTAGTAACTCGCA
Found at i:33320013 original size:40 final size:40
Alignment explanation
Indices: 33319976--33320199 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
33319966 GCTACTCGTT
* *
33319976 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
33320016 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
33320056 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
**
33320096 CAAATGCCTTC-GGATCTTAGTCCGGA-TTAGT-ACTCGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
** * * * *
33320134 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
33320175 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
33320200 CATCATTCAA
Statistics
Matches: 170, Mismatches: 8, Indels: 12
0.89 0.04 0.06
Matches are distributed among these distances:
38 33 0.19
39 11 0.06
40 113 0.66
41 13 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:33320159 original size:118 final size:120
Alignment explanation
Indices: 33319976--33320199 Score: 296
Period size: 118 Copynumber: 1.9 Consensus size: 120
33319966 GCTACTCGTT
*
33319976 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
33320041 ATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * **
33320096 CAAATGCCTTC-GGATCTTAGTCCGGAT-TAGT-ACTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGA-CATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* * *
33320157 GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
33320200 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
117 3 0.03
118 53 0.58
119 15 0.16
120 20 0.22
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:33326167 original size:43 final size:43
Alignment explanation
Indices: 33326111--33326238 Score: 177
Period size: 43 Copynumber: 3.0 Consensus size: 43
33326101 ATATCGTACA
** * *
33326111 ATGCCAACGTCCCAGACGTGGTCCTACATGCAATCACATATCG
1 ATGCCAATATCCCAGACGTGGTCTTACATGTAATCACATATCG
* *
33326154 ATGCCACTATCCCAGACAG-GGTCTTACACGTAATCACATATCG
1 ATGCCAATATCCCAGAC-GTGGTCTTACATGTAATCACATATCG
*
33326197 ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCACATATC
1 ATGCCAATATCCCAGACGTGGTCTTACATGTAATCACATATC
33326239 AGAAATCCTA
Statistics
Matches: 74, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
42 1 0.01
43 72 0.97
44 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (43 bp):
ATGCCAATATCCCAGACGTGGTCTTACATGTAATCACATATCG
Found at i:33327382 original size:14 final size:15
Alignment explanation
Indices: 33327365--33327393 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
33327355 ACACGAAAAT
33327365 TTCACACAT-ATAAA
1 TTCACACATAATAAA
33327379 TTCACACATAATAAA
1 TTCACACATAATAAA
33327394 CAAAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:33335255 original size:93 final size:93
Alignment explanation
Indices: 33335129--33335299 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
33335119 CCCATAAGTG
* * * *
33335129 AACTCGGACTCAACTCAATGAGCTCGAGCATTCGCATCCACAAGTGAACTCGGGCTCAACTCAAC
1 AACTCGAACTCAACTCAACGAGCTCGAGCATTCGCATCCACAAGTGAACTCAGACTCAACTCAAC
33335194 GAGCTCGGATGCCTAGTTACATCTCTCA
66 GAGCTCGGATGCCTAGTTACATCTCTCA
* *
33335222 AACTCGAACTCAACTCAACGAGTTCG-GACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 AACTCGAACTCAACTCAACGAGCTCGAG-CATTCGCATCCACAAGTGAACTCAGACTCAACTCAA
*
33335286 CGAGTTCGGATGCC
65 CGAGCTCGGATGCC
33335300 CAAATATCCT
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 1 0.01
93 69 0.99
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (93 bp):
AACTCGAACTCAACTCAACGAGCTCGAGCATTCGCATCCACAAGTGAACTCAGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCTCA
Found at i:33335288 original size:46 final size:47
Alignment explanation
Indices: 33335120--33335295 Score: 177
Period size: 46 Copynumber: 3.8 Consensus size: 47
33335110 TGTAACCCGC
*
33335120 CCATAAGTGAACTCGGACTCAACTCAATGAGCTC-GAGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAGCATTCGCAT
* * *
33335166 CCACAAGTGAACTCGGGCTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA-G-C-A-TTCGCAT
* * *
33335216 CTC-TCA---AACTCGAACTCAACTCAACGAGTTCGGA-CATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAGCATTCGCAT
* *
33335259 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
33335296 TGCCCAAATA
Statistics
Matches: 106, Mismatches: 13, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
42 3 0.03
43 7 0.07
44 1 0.01
46 57 0.54
47 27 0.25
48 1 0.01
49 1 0.01
50 6 0.06
51 3 0.03
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.21
Consensus pattern (47 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAGCATTCGCAT
Found at i:33349613 original size:40 final size:40
Alignment explanation
Indices: 33349516--33349701 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
33349506 TTGAATGATG
* * * *
33349516 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
33349556 TCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
33349596 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
33349636 TCCGGGTTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
33349677 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
33349702 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 119 0.92
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:33349708 original size:80 final size:79
Alignment explanation
Indices: 33349569--33349734 Score: 219
Period size: 80 Copynumber: 2.1 Consensus size: 79
33349559 GGACTAAGAT
* **
33349569 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCT
*
33349633 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAATC
* *
33349649 CCGAAGGCATTTGTGCTAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCT
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCT
* *
33349713 ATATCCGGTTAAATT
65 AAATCCGGTTAAATC
33349728 CCGAAGG
1 CCGAAGG
33349735 TACGTGATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
79 16 0.21
80 58 0.76
81 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAATC
Found at i:33353920 original size:29 final size:27
Alignment explanation
Indices: 33353884--33353940 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 27
33353874 AGACTCCTAA
* **
33353884 TTTCTATATTGTTTTGTATATTGATTGT
1 TTTCTATATTATTTCATATATT-ATTGT
33353912 TTTCATATATTATTTCATATATTATTGT
1 TTTC-TATATTATTTCATATATTATTGT
33353940 T
1 T
33353941 GCATGTTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 10 0.40
29 15 0.60
ACGTcount: A:0.23, C:0.05, G:0.09, T:0.63
Consensus pattern (27 bp):
TTTCTATATTATTTCATATATTATTGT
Found at i:33353929 original size:12 final size:12
Alignment explanation
Indices: 33353912--33353937 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
33353902 TATTGATTGT
33353912 TTTCATATATTA
1 TTTCATATATTA
33353924 TTTCATATATTA
1 TTTCATATATTA
33353936 TT
1 TT
33353938 GTTGCATGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.08, G:0.00, T:0.62
Consensus pattern (12 bp):
TTTCATATATTA
Found at i:33354710 original size:77 final size:77
Alignment explanation
Indices: 33354583--33354744 Score: 252
Period size: 77 Copynumber: 2.1 Consensus size: 77
33354573 AGTTTTTGGA
* * * *
33354583 AATCAAGAATTGGTCGTAGCTACGAGGGTTTAAAGGATCGTTTCCTAACGTGCTGGATGTGATAC
1 AATCAAGAATTGATCGTAGCTACAAAGGTTTAAAGGATCGTGTCCTAACGTGCTGGATGTGATAC
33354648 TGTATTCCTTTG
66 TGTATTCCTTTG
* * *
33354660 AATCAAGAATTGATCGTAGTTTCAAAGGTTTAAAGGATCGTGTCCTAACGTGCTGGATGTGATAT
1 AATCAAGAATTGATCGTAGCTACAAAGGTTTAAAGGATCGTGTCCTAACGTGCTGGATGTGATAC
33354725 TGTATTCCTTTG
66 TGTATTCCTTTG
*
33354737 AAACAAGA
1 AATCAAGA
33354745 GAGTTTTAAC
Statistics
Matches: 77, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
77 77 1.00
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.33
Consensus pattern (77 bp):
AATCAAGAATTGATCGTAGCTACAAAGGTTTAAAGGATCGTGTCCTAACGTGCTGGATGTGATAC
TGTATTCCTTTG
Found at i:33356875 original size:43 final size:43
Alignment explanation
Indices: 33356807--33356937 Score: 140
Period size: 43 Copynumber: 3.0 Consensus size: 43
33356797 ACATATCGTA
* ** *
33356807 CAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATAT
1 CAATGCCAACTTCAAAGAAGTGGTCTTACATGTAATCACATAT
* *
33356850 CAATGCC-ACTGTCAAAGACAG-GGTCTTACACGTAATCACATAA
1 CAATGCCAACT-TCAAAGA-AGTGGTCTTACATGTAATCACATAT
* ** *
33356893 CGATGCCAACTTCCCAGATGTGGTCTTACATGTAATCACATAT
1 CAATGCCAACTTCAAAGAAGTGGTCTTACATGTAATCACATAT
33356936 CA
1 CA
33356938 GAAATCCTAT
Statistics
Matches: 71, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
42 3 0.04
43 64 0.90
44 4 0.06
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (43 bp):
CAATGCCAACTTCAAAGAAGTGGTCTTACATGTAATCACATAT
Found at i:33359924 original size:29 final size:29
Alignment explanation
Indices: 33359889--33359954 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 29
33359879 CTAAACCCAC
*
33359889 TAACCCA-AAACAAGACCCAATTACCCATT
1 TAACCCATAAACAA-AACCAATTACCCATT
***
33359918 TAACCCATCCTCAAAACCAATTACCCATT
1 TAACCCATAAACAAAACCAATTACCCATT
33359947 TAACCCAT
1 TAACCCAT
33359955 TTTCAAACCC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 29 0.91
30 3 0.09
ACGTcount: A:0.41, C:0.36, G:0.02, T:0.21
Consensus pattern (29 bp):
TAACCCATAAACAAAACCAATTACCCATT
Found at i:33359966 original size:29 final size:29
Alignment explanation
Indices: 33359903--33359966 Score: 101
Period size: 29 Copynumber: 2.2 Consensus size: 29
33359893 CCAAAACAAG
33359903 ACCCAATTACCCATTTAACCCATCCTCAA
1 ACCCAATTACCCATTTAACCCATCCTCAA
* **
33359932 AACCAATTACCCATTTAACCCATTTTCAA
1 ACCCAATTACCCATTTAACCCATCCTCAA
33359961 ACCCAA
1 ACCCAA
33359967 ACTAAACCTA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (29 bp):
ACCCAATTACCCATTTAACCCATCCTCAA
Found at i:33361240 original size:12 final size:12
Alignment explanation
Indices: 33361199--33361240 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
33361189 GTGTATGTTT
33361199 TATTATATAT-G
1 TATTATATATAG
*
33361210 TATGTATATATAT
1 TAT-TATATATAG
*
33361223 TTTTATATATAG
1 TATTATATATAG
33361235 TATTAT
1 TATTAT
33361241 TTTAATTACT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
11 3 0.12
12 20 0.80
13 2 0.08
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (12 bp):
TATTATATATAG
Found at i:33361373 original size:21 final size:20
Alignment explanation
Indices: 33361326--33361379 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 20
33361316 AGTAGTAGTA
* *
33361326 GTATATGTTTTATTATATAT
1 GTATATATTTAATTATATAT
*
33361346 GCATATATCTTTAATATATATAT
1 G--TATATATTTAAT-TATATAT
33361369 GTATATATTTA
1 GTATATATTTA
33361380 GGTAGTATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
20 1 0.04
21 9 0.32
22 10 0.36
23 8 0.29
ACGTcount: A:0.35, C:0.04, G:0.07, T:0.54
Consensus pattern (20 bp):
GTATATATTTAATTATATAT
Found at i:33361712 original size:11 final size:11
Alignment explanation
Indices: 33361696--33361798 Score: 77
Period size: 11 Copynumber: 9.1 Consensus size: 11
33361686 CGAATATAGG
33361696 TATATATATAT
1 TATATATATAT
33361707 TATATATATAT
1 TATATATATAT
*
33361718 TATGTATATATT
1 TATATATATA-T
*
33361730 TTTAATATTATAGT
1 TAT-ATA-TATA-T
33361744 TATATATAT-T
1 TATATATATAT
*
33361754 TTTATACTAT-T
1 TATATA-TATAT
*
33361765 TCATGTATATAT
1 T-ATATATATAT
*
33361777 TTTAT-TATAT
1 TATATATATAT
*
33361787 TATGTATATAT
1 TATATATATAT
33361798 T
1 T
33361799 TTAATAACTA
Statistics
Matches: 73, Mismatches: 12, Indels: 14
0.74 0.12 0.14
Matches are distributed among these distances:
10 14 0.19
11 36 0.49
12 11 0.15
13 5 0.07
14 7 0.10
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.58
Consensus pattern (11 bp):
TATATATATAT
Found at i:33361724 original size:26 final size:26
Alignment explanation
Indices: 33361695--33361818 Score: 85
Period size: 25 Copynumber: 5.2 Consensus size: 26
33361685 TCGAATATAG
33361695 GTATATATATATTATATATATATTAT
1 GTATATATATATTATATATATATTAT
*
33361721 GTATATAT-TTTTA-ATAT-TA-TA-
1 GTATATATATATTATATATATATTAT
*
33361742 GT-TATATATATT-TTTATACTATT-T
1 GTATATATATATTATATATA-TATTAT
* * *
33361766 -CATGTATATATTTTAT-TATATTAT
1 GTATATATATATTATATATATATTAT
33361790 GTATATAT-T-TTA-ATAACTATATTAT
1 GTATATATATATTATAT-A-TATATTAT
33361815 GTAT
1 GTAT
33361819 GTATTTTTAA
Statistics
Matches: 76, Mismatches: 9, Indels: 27
0.68 0.08 0.24
Matches are distributed among these distances:
20 5 0.07
21 8 0.11
22 4 0.05
23 10 0.13
24 18 0.24
25 23 0.30
26 8 0.11
ACGTcount: A:0.36, C:0.02, G:0.05, T:0.56
Consensus pattern (26 bp):
GTATATATATATTATATATATATTAT
Found at i:33361726 original size:24 final size:24
Alignment explanation
Indices: 33361698--33361994 Score: 105
Period size: 22 Copynumber: 13.0 Consensus size: 24
33361688 AATATAGGTA
33361698 TATATATATTATATATATATTATG
1 TATATATATTATATATATATTATG
33361722 TATATAT-TT-T-TA-ATATTATAG
1 TATATATATTATATATATATTAT-G
*
33361743 TTATATATATT-TTTATACTATTTCATG
1 -TATATATATTATATATA-TA-TT-ATG
33361770 TATATAT-TT-TAT-TATATTATG
1 TATATATATTATATATATATTATG
*
33361791 TATATATTTTA-ATAACTATATTATG
1 TATATATATTATAT-A-TATATTATG
* * *
33361816 TATGTAT-TTTTA-ATGCTATTTATG
1 TATATATATTATATAT-ATA-TTATG
*
33361840 TATATACTTTTA-ATAT-TATTATG
1 TATATA-TATTATATATATATTATG
* *
33361863 CAT-T-TATTTTA-ATATA-TATG
1 TATATATATTATATATATATTATG
* * *
33361883 TACATAT-TTATGTA-GTATTAT-
1 TATATATATTATATATATATTATG
33361904 TAATATATATTAT-T-TATATTAT-
1 T-ATATATATTATATATATATTATG
33361926 TAGTAT-T-TCTA-ATATATA-T-TG
1 TA-TATATAT-TATATATATATTATG
* * *
33361947 TATATGTTCATTTTATATATATTACG
1 TATAT-AT-ATTATATATATATTATG
*
33361973 TACATATATT-TAT-TATTATTAT
1 TATATATATTATATATA-TATTAT
33361995 TACGTACATA
Statistics
Matches: 211, Mismatches: 21, Indels: 83
0.67 0.07 0.26
Matches are distributed among these distances:
20 22 0.10
21 31 0.15
22 44 0.21
23 30 0.14
24 36 0.17
25 25 0.12
26 18 0.09
27 3 0.01
28 2 0.01
ACGTcount: A:0.35, C:0.04, G:0.05, T:0.56
Consensus pattern (24 bp):
TATATATATTATATATATATTATG
Found at i:33361774 original size:46 final size:46
Alignment explanation
Indices: 33361690--33361829 Score: 128
Period size: 48 Copynumber: 3.0 Consensus size: 46
33361680 TCATTTCGAA
* *
33361690 TATAGGTATATATATATTATATA-TATATTATGTATATATTTTTAATAT
1 TATAGTTATATATAT-TTTTATACTATATTATG--TATATTTTTAATAT
*
33361738 TATAGTTATATATATTTTTATACTAT-TTCATGTATATATTT--TAT
1 TATAGTTATATATATTTTTATACTATATT-ATGTATATTTTTAATAT
*
33361782 TATA-TTATGTATATATTTTAATAACTATATTATGTATGTATTTTTAAT
1 TATAGTTA--TATATATTTTTAT-ACTATATTATGTA--TATTTTTAAT
33361830 GCTATTTATG
Statistics
Matches: 77, Mismatches: 5, Indels: 18
0.77 0.05 0.18
Matches are distributed among these distances:
43 3 0.04
44 7 0.09
45 12 0.16
46 18 0.23
47 10 0.13
48 26 0.34
50 1 0.01
ACGTcount: A:0.36, C:0.02, G:0.06, T:0.56
Consensus pattern (46 bp):
TATAGTTATATATATTTTTATACTATATTATGTATATTTTTAATAT
Found at i:33361844 original size:94 final size:91
Alignment explanation
Indices: 33361713--33361891 Score: 209
Period size: 94 Copynumber: 1.9 Consensus size: 91
33361703 ATATTATATA
* * *
33361713 TATATTATGTATATATTTTTAATATTATAGTTATATATATTTTTATACTATT-TCATGTATATAT
1 TATATTATGTATATATTTTTAATACTATA-TTATATATACTTTTA-A-TATTATCATGCATATAT
* *
33361777 TTTATTATATTATGTATATATTTTAATAAC
63 TTTAATATA-TATGTACATATTTTAATAAC
* * * *
33361807 TATATTATGTATGTATTTTTAATGCTAT-TTATGTATATACTTTTAATATTATTATGCATTTATT
1 TATATTATGTATATATTTTTAATACTATATTA--TATATACTTTTAATATTATCATGCATATATT
33361871 TTAATATATATGTACATATTT
64 TTAATATATATGTACATATTT
33361892 ATGTAGTATT
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
92 19 0.26
93 18 0.25
94 36 0.49
ACGTcount: A:0.34, C:0.04, G:0.06, T:0.57
Consensus pattern (91 bp):
TATATTATGTATATATTTTTAATACTATATTATATATACTTTTAATATTATCATGCATATATTTT
AATATATATGTACATATTTTAATAAC
Found at i:33361939 original size:31 final size:30
Alignment explanation
Indices: 33361867--33361945 Score: 97
Period size: 31 Copynumber: 2.5 Consensus size: 30
33361857 ATTATGCATT
33361867 TATTTTAATATATATGTACATATTTATGTAG
1 TATTTTAATATATAT-TACATATTTATGTAG
**
33361898 TATTATTAATATATATTATTTATATTAT-TAG
1 TATT-TTAATATATATTACATAT-TTATGTAG
33361929 TATTTCTAATATATATT
1 TATTT-TAATATATATT
33361946 GTATATGTTC
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
30 1 0.02
31 27 0.63
32 15 0.35
ACGTcount: A:0.37, C:0.03, G:0.05, T:0.56
Consensus pattern (30 bp):
TATTTTAATATATATTACATATTTATGTAG
Found at i:33361988 original size:26 final size:25
Alignment explanation
Indices: 33361959--33362019 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 25
33361949 TATGTTCATT
33361959 TTATATATATTACGTACATATATTTA
1 TTATATATATTACGTACATA-ATTTA
*
33361985 TTAT-TATTATTACGTACATACTTTA
1 TTATATA-TATTACGTACATAATTTA
*
33362010 ATATATATAT
1 TTATATATAT
33362020 AGCACTATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
25 12 0.39
26 19 0.61
ACGTcount: A:0.38, C:0.08, G:0.03, T:0.51
Consensus pattern (25 bp):
TTATATATATTACGTACATAATTTA
Found at i:33365555 original size:40 final size:40
Alignment explanation
Indices: 33365457--33365719 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
33365447 TCCTCGTTCA
* * * * *
33365457 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
33365496 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
33365536 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
33365576 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
33365616 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
33365656 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
33365696 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
33365720 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.19
40 153 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:33373258 original size:40 final size:40
Alignment explanation
Indices: 33373187--33373370 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
33373177 GCTACTCGTT
*
33373187 CAAATG-CTTCGGGACATAGCCC-GATTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
33373226 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
33373266 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
33373305 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
33373346 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
33373371 CATCATTCGA
Statistics
Matches: 126, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
38 2 0.02
39 39 0.31
40 70 0.56
41 15 0.12
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:33373299 original size:79 final size:81
Alignment explanation
Indices: 33373189--33373370 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
33373179 TACTCGTTCA
* *
33373189 AATG-CTTCGGGACATAGCCC-GATTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
33373251 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
33373268 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
33373331 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
33373347 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
33373371 CATCATTCGA
Statistics
Matches: 89, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
78 3 0.03
79 61 0.69
80 25 0.28
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:33386147 original size:38 final size:40
Alignment explanation
Indices: 33386037--33386220 Score: 155
Period size: 40 Copynumber: 4.7 Consensus size: 40
33386027 GCTACTCGTT
* * * *
33386037 CAAATGCTTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGAAT-TAGTAACTCGCA
* * *
33386077 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAATTC-TA
1 CAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
* *
33386116 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
** * * *
33386155 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGAAT-TAGTAAC-TCGCA
*
33386196 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
33386221 CATCATTCGA
Statistics
Matches: 120, Mismatches: 16, Indels: 15
0.79 0.11 0.10
Matches are distributed among these distances:
38 21 0.17
39 27 0.22
40 59 0.49
41 13 0.11
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
Found at i:33399335 original size:21 final size:19
Alignment explanation
Indices: 33399291--33399326 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
33399281 AAAGTCGTCG
*
33399291 GTGGTTGATGGCTCTTCTC
1 GTGGTGGATGGCTCTTCTC
33399310 GTGGTGGATGG-TCTTCT
1 GTGGTGGATGGCTCTTCT
33399327 TTTCGTGGTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.06, C:0.17, G:0.36, T:0.42
Consensus pattern (19 bp):
GTGGTGGATGGCTCTTCTC
Found at i:33399568 original size:27 final size:26
Alignment explanation
Indices: 33399530--33399644 Score: 97
Period size: 21 Copynumber: 4.7 Consensus size: 26
33399520 ATGGAAATGG
33399530 TGGTAATGGTCAAAATTGGCAAGCTAA
1 TGGTAATGGTCAAAATTGGC-AGCTAA
* *
33399557 TGGTACTGGTCAAAGTT-G--G--AA
1 TGGTAATGGTCAAAATTGGCAGCTAA
*
33399578 TGGTACTGGTCAAAATTGGCAGGCTAA
1 TGGTAATGGTCAAAATTGGCA-GCTAA
**
33399605 TTTTAATGGTCAAAATT-G--G--AA
1 TGGTAATGGTCAAAATTGGCAGCTAA
33399626 TGGTAATGGTCAAAATTGG
1 TGGTAATGGTCAAAATTGG
33399645 AATGGTAGTG
Statistics
Matches: 73, Mismatches: 8, Indels: 19
0.73 0.08 0.19
Matches are distributed among these distances:
21 35 0.48
22 2 0.03
23 2 0.03
25 1 0.01
26 2 0.03
27 31 0.42
ACGTcount: A:0.33, C:0.10, G:0.28, T:0.30
Consensus pattern (26 bp):
TGGTAATGGTCAAAATTGGCAGCTAA
Found at i:33399579 original size:21 final size:21
Alignment explanation
Indices: 33399555--33399665 Score: 114
Period size: 21 Copynumber: 5.0 Consensus size: 21
33399545 TTGGCAAGCT
* *
33399555 AATGGTACTGGTCAAAGTTGG
1 AATGGTAATGGTCAAAATTGG
*
33399576 AATGGTACTGGTCAAAATTGGCAGG
1 AATGGTAATGGTCAAAATT----GG
**
33399601 CTAATTTTAATGGTCAAAATTGG
1 --AATGGTAATGGTCAAAATTGG
33399624 AATGGTAATGGTCAAAATTGG
1 AATGGTAATGGTCAAAATTGG
*
33399645 AATGGTAGTGGTCAAAATTGG
1 AATGGTAATGGTCAAAATTGG
33399666 GGTGTCTTTT
Statistics
Matches: 77, Mismatches: 7, Indels: 12
0.80 0.07 0.12
Matches are distributed among these distances:
21 57 0.74
23 2 0.03
25 2 0.03
27 16 0.21
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (21 bp):
AATGGTAATGGTCAAAATTGG
Found at i:33399591 original size:48 final size:48
Alignment explanation
Indices: 33399530--33399644 Score: 176
Period size: 48 Copynumber: 2.4 Consensus size: 48
33399520 ATGGAAATGG
* *
33399530 TGGTAATGGTCAAAATTGGCAAGCTAATGGTACTGGTCAAAGTTGGAA
1 TGGTAATGGTCAAAATTGGCAAGCTAATGGTAATGGTCAAAATTGGAA
* * **
33399578 TGGTACTGGTCAAAATTGGCAGGCTAATTTTAATGGTCAAAATTGGAA
1 TGGTAATGGTCAAAATTGGCAAGCTAATGGTAATGGTCAAAATTGGAA
33399626 TGGTAATGGTCAAAATTGG
1 TGGTAATGGTCAAAATTGG
33399645 AATGGTAGTG
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 60 1.00
ACGTcount: A:0.33, C:0.10, G:0.28, T:0.30
Consensus pattern (48 bp):
TGGTAATGGTCAAAATTGGCAAGCTAATGGTAATGGTCAAAATTGGAA
Found at i:33399656 original size:27 final size:25
Alignment explanation
Indices: 33399530--33399656 Score: 81
Period size: 27 Copynumber: 5.2 Consensus size: 25
33399520 ATGGAAATGG
*
33399530 TGGTAATGGTCAAAATTGGCAAGCTAA
1 TGGTAATGGTCAAAATTGG-AAGGT-A
* *
33399557 TGGTACTGGTCAAAGTTGG-A---A
1 TGGTAATGGTCAAAATTGGAAGGTA
* *
33399578 TGGTACTGGTCAAAATTGGCAGGCTAA
1 TGGTAATGGTCAAAATTGGAAGG-T-A
**
33399605 TTTTAATGGTCAAAATTGG-A---A
1 TGGTAATGGTCAAAATTGGAAGGTA
33399626 TGGTAATGGTCAAAATTGGAATGGTA
1 TGGTAATGGTCAAAATTGGAA-GGTA
33399652 GTGGT
1 -TGGT
33399657 CAAAATTGGG
Statistics
Matches: 80, Mismatches: 8, Indels: 24
0.71 0.07 0.21
Matches are distributed among these distances:
21 37 0.46
22 2 0.03
25 1 0.01
26 2 0.03
27 38 0.47
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (25 bp):
TGGTAATGGTCAAAATTGGAAGGTA
Found at i:33406149 original size:19 final size:20
Alignment explanation
Indices: 33406112--33406151 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
33406102 TATTTCAATT
* *
33406112 TAATTTTTTATTTTCTTTTC
1 TAATTTTTCATTTTATTTTC
33406132 TAATTTTTCA-TTTATTTTC
1 TAATTTTTCATTTTATTTTC
33406151 T
1 T
33406152 TCTGACAGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.17, C:0.10, G:0.00, T:0.72
Consensus pattern (20 bp):
TAATTTTTCATTTTATTTTC
Found at i:33421914 original size:29 final size:29
Alignment explanation
Indices: 33421872--33421939 Score: 100
Period size: 29 Copynumber: 2.3 Consensus size: 29
33421862 TGTGCCTAGT
* *
33421872 CCGTGTGCCCTAAAAATGGCCACACACAC
1 CCGTGTACCATAAAAATGGCCACACACAC
*
33421901 CCGTGTACCATAAAAATGGCCACACACGC
1 CCGTGTACCATAAAAATGGCCACACACAC
*
33421930 CTGTGTACCA
1 CCGTGTACCA
33421940 GGCCGTGTAC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.31, C:0.35, G:0.18, T:0.16
Consensus pattern (29 bp):
CCGTGTACCATAAAAATGGCCACACACAC
Found at i:33422084 original size:13 final size:13
Alignment explanation
Indices: 33422066--33422090 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33422056 ACTAGGGGAC
33422066 ACAAGGCCGTGTA
1 ACAAGGCCGTGTA
33422079 ACAAGGCCGTGT
1 ACAAGGCCGTGT
33422091 GTCACACACG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.24, G:0.32, T:0.16
Consensus pattern (13 bp):
ACAAGGCCGTGTA
Found at i:33430522 original size:20 final size:20
Alignment explanation
Indices: 33430494--33430542 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
33430484 ATTGCTGCAA
*
33430494 TATTTATGGCTTTGTGCCAC
1 TATTGATGGCTTTGTGCCAC
*
33430514 TATTGATGGCTTTGTGCCGC
1 TATTGATGGCTTTGTGCCAC
*
33430534 TACTGATGG
1 TATTGATGG
33430543 ATTCGAGCTG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.14, C:0.18, G:0.27, T:0.41
Consensus pattern (20 bp):
TATTGATGGCTTTGTGCCAC
Found at i:33430824 original size:28 final size:27
Alignment explanation
Indices: 33430764--33430816 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 27
33430754 CCATACTATT
33430764 ACTGTTACTATAATGGGCTCAGGCCCA
1 ACTGTTACTATAATGGGCTCAGGCCCA
*
33430791 ATCTGTTACTA-ATATGGGCTTAGGCC
1 A-CTGTTACTATA-ATGGGCTCAGGCC
33430817 TAGACTGTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 2 0.09
28 21 0.91
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (27 bp):
ACTGTTACTATAATGGGCTCAGGCCCA
Found at i:33433784 original size:44 final size:44
Alignment explanation
Indices: 33433731--33433887 Score: 162
Period size: 43 Copynumber: 3.6 Consensus size: 44
33433721 TGTGTCATCA
* *
33433731 TGTATGACCACGTCTGGGACATTGGCATCGATTTATGATTTACG
1 TGTAAGACCACGTCTGAGACATTGGCATCGATTTATGATTTACG
* *
33433775 TGTAAGACCATGTCTGAGACATTGGCATCG-TATATGATTT-CG
1 TGTAAGACCACGTCTGAGACATTGGCATCGATTTATGATTTACG
* * * ** *
33433817 TGTAAGACC-CTATTTGGGACAGCGGCATCGATATT-TGA-TTACA
1 TGTAAGACCAC-GTCTGAGACATTGGCATCGAT-TTATGATTTACG
*
33433860 TGTAAGACCACGTCTGAGACGTTGGCAT
1 TGTAAGACCACGTCTGAGACATTGGCAT
33433888 TGTATAAGCT
Statistics
Matches: 90, Mismatches: 18, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
42 27 0.30
43 34 0.38
44 29 0.32
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.31
Consensus pattern (44 bp):
TGTAAGACCACGTCTGAGACATTGGCATCGATTTATGATTTACG
Found at i:33440427 original size:40 final size:41
Alignment explanation
Indices: 33440170--33440427 Score: 345
Period size: 40 Copynumber: 6.5 Consensus size: 41
33440160 AAACCAAGTA
* * * *
33440170 CCTTCGGGATTTA-ACCGG-ATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGAATATAG-TAACTCGCACAAATG
**
33440209 CCTTCGGGACTTAGCCC-GAATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATG
33440249 CCTTCGGGACTTAGCCCGG-ATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATG
*
33440289 CCTTCGGAACTTAGCCCGG-ATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATG
*
33440329 CCTTCGGGACTTAGCCCGAAAT-TAGTAACTCGCA-ACAATG
1 CCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACA-AATG
* *
33440369 CCTTCGGGACTTAGCCCGGAAT-TAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATG
33440409 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
33440428 TTATCATCCG
Statistics
Matches: 198, Mismatches: 14, Indels: 13
0.88 0.06 0.06
Matches are distributed among these distances:
39 15 0.08
40 179 0.90
41 4 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (41 bp):
CCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATG
Found at i:33448601 original size:40 final size:40
Alignment explanation
Indices: 33448539--33448796 Score: 373
Period size: 40 Copynumber: 6.5 Consensus size: 40
33448529 AAACCAAGTA
* * * *
33448539 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
33448578 CCTTCGGGACTTAGCCCGGATATAGT-AGTACGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACT-CGCACAAATG
33448618 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
33448658 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
33448698 CCTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* * *
33448738 CCTTCGGGACTTAGCCCAGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
33448778 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
33448797 TTATCATCCG
Statistics
Matches: 205, Mismatches: 10, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
39 16 0.08
40 187 0.91
41 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:33454291 original size:30 final size:30
Alignment explanation
Indices: 33454256--33454319 Score: 110
Period size: 30 Copynumber: 2.1 Consensus size: 30
33454246 GTACAAGGCT
*
33454256 CACACGTCCGTGTGGTCAGGCCGTGTACTA
1 CACACGCCCGTGTGGTCAGGCCGTGTACTA
*
33454286 CACACGCCCGTGTGGTCAGGCTGTGTACTA
1 CACACGCCCGTGTGGTCAGGCCGTGTACTA
33454316 CACA
1 CACA
33454320 TGCCTGCCTC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.19, C:0.31, G:0.28, T:0.22
Consensus pattern (30 bp):
CACACGCCCGTGTGGTCAGGCCGTGTACTA
Done.