genome.fa.s100.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2648
Parameters: 2 7 7 80 10 50 1000
Length:  154102

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3915--4178	40	6.7	40	86	4	302	24	20	28	26	1.99
3967--4211	80	3.1	80	84	2	235	25	20	28	25	1.99
9647--9798	27	5.6	27	93	3	241	26	13	28	30	1.94
9647--9798	55	2.8	55	94	0	259	26	13	28	30	1.94
15776--16174	48	8.4	47	76	10	278	28	21	27	22	1.99
15776--16035	94	2.8	96	82	5	289	29	20	28	22	1.98
15815--16228	142	2.9	142	79	9	346	27	20	28	22	1.99
16206--16249	22	2.0	22	95	0	79	27	25	31	15	1.96
24596--24791	55	3.6	54	78	6	182	19	24	19	35	1.95
24596--24802	53	3.8	53	78	4	218	19	24	19	36	1.95
26772--26805	10	3.4	10	100	0	68	29	29	8	32	1.87
30410--30486	40	1.9	40	94	0	136	15	25	18	40	1.90
37515--37569	23	2.4	23	93	0	92	12	23	36	27	1.91
50313--50376	31	2.1	31	90	0	101	25	23	14	37	1.92
50591--50761	25	7.1	23	86	8	234	27	22	21	28	1.99
50808--50878	20	3.5	20	92	0	115	32	18	12	36	1.88
52120--52203	27	3.1	27	87	3	116	21	25	21	32	1.98
52120--52220	27	3.7	27	85	5	107	21	22	21	33	1.97
52265--52316	27	1.9	27	84	7	70	34	13	13	38	1.84
52353--52519	81	2.1	81	89	2	255	30	9	20	38	1.85
52355--52533	27	6.7	26	81	8	171	30	9	19	40	1.83
52526--52709	27	6.8	27	86	2	208	38	8	23	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52706--52781	27	2.8	26	84	7	89	31	9	18	40	1.82
55331--55373	21	2.0	21	95	0	77	44	9	4	41	1.57
59852--59896	22	2.0	22	100	0	90	55	13	13	17	1.69
60782--60822	22	2.0	20	85	9	55	24	4	14	56	1.58
61452--61525	29	2.6	29	95	0	130	21	20	27	31	1.98
68951--69156	27	7.7	27	82	8	156	41	17	9	31	1.82
68951--69182	81	2.9	81	83	7	240	41	17	10	30	1.84
68951--69144	54	3.6	53	84	6	196	41	17	10	31	1.82
68951--69182	54	4.3	54	83	7	188	41	17	10	30	1.84
68973--69168	27	7.3	27	84	6	168	41	16	11	31	1.83
69000--69188	27	7.0	27	81	9	174	40	16	12	30	1.86
69040--69198	81	2.0	81	85	5	214	41	16	13	28	1.86
71092--71316	40	5.7	40	82	6	233	25	28	21	25	1.99
71248--71325	40	1.9	41	82	10	97	26	28	20	24	1.99
79008--79232	40	5.7	40	82	6	233	25	28	21	25	1.99
79164--79241	40	1.9	41	82	10	97	26	28	20	24	1.99
96611--96671	30	2.0	30	87	0	86	29	24	4	40	1.76
102597--102639	18	2.4	18	80	3	52	39	6	6	46	1.58
109684--109934	102	2.4	104	80	8	298	37	17	25	20	1.94
110001--110045	23	1.9	24	90	4	74	42	11	24	22	1.86
110124--110154	16	1.9	16	93	0	53	41	0	22	35	1.54
116636--116680	23	1.9	24	90	4	74	42	11	24	22	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116759--116789	16	1.9	16	93	0	53	41	0	22	35	1.54
123068--123128	20	3.0	20	87	0	95	34	13	21	31	1.91
123184--123264	24	3.4	24	83	11	103	29	19	20	29	1.97
129441--129618	27	6.6	27	79	3	115	28	28	16	26	1.97
129441--129618	54	3.3	55	80	10	204	28	28	16	26	1.97
129462--129617	82	1.9	81	85	3	215	28	28	16	26	1.97
137545--137722	27	6.6	27	79	3	115	28	28	16	26	1.97
137545--137722	54	3.3	55	80	10	204	28	28	16	26	1.97
137566--137721	82	1.9	81	85	3	215	28	28	16	26	1.97
149522--149706	40	4.7	39	79	7	178	25	20	28	25	1.99

Tables:   1

The End!