Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2788
Parameters: 2 7 7 80 10 50 1000
Length:  58606

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
361--493
35
3.9
35
76
10
96
45
11
12
30
1.76
401--702
17
17.4
17
70
14
154
46
11
12
29
1.77
401--702
18
17.3
18
72
11
211
46
11
12
29
1.77
443--702
35
7.5
33
71
14
159
46
11
11
30
1.76
875--916
17
2.5
17
88
3
59
52
7
9
30
1.61
897--937
20
2.0
20
86
9
57
39
9
9
41
1.71
897--937
19
2.1
20
86
4
57
39
9
9
41
1.71
1096--1150
17
3.4
16
78
11
51
69
5
1
23
1.19
1241--1294
15
3.6
15
75
9
56
0
20
0
79
0.73
1239--1293
24
2.2
24
87
9
76
0
20
0
80
0.72
1239--1293
25
2.2
26
87
9
78
0
20
0
80
0.72
1560--1651
3
29.0
3
76
16
55
0
29
0
70
0.87
1563--1646
7
11.6
7
79
15
91
0
27
0
72
0.85
1566--1637
4
19.5
4
75
16
75
0
26
0
73
0.83
1566--1637
15
4.9
15
84
8
94
0
26
0
73
0.83
1547--1644
15
6.1
15
73
20
67
1
25
1
72
0.97
1963--2021
30
2.0
30
86
0
82
38
5
22
33
1.76
7615--8619
502
2.0
499
98
0
1947
31
11
11
45
1.76
10323--10352
15
1.9
16
93
6
53
53
6
0
40
1.27
16809--16846
19
1.9
19
85
15
51
78
0
2
18
0.86
17916--17946
8
3.9
8
95
0
53
35
3
0
61
1.12
20551--20589
20
2.0
20
85
10
53
7
23
2
66
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32858--32907
24
2.1
24
88
0
73
42
28
8
22
1.81
37005--37054
24
2.1
24
88
0
73
42
28
8
22
1.81
40972--41540
285
2.0
291
91
3
925
42
12
15
29
1.83
45251--45280
15
1.9
16
93
6
53
53
6
0
40
1.27
46190--46758
285
2.0
291
91
3
943
42
12
15
29
1.83
53430--53479
15
3.3
15
86
5
57
62
6
6
26
1.42
54737--54837
43
2.3
43
80
6
107
26
26
13
32
1.94
55200--55358
44
3.6
43
76
9
153
27
24
20
27
1.99
55194--55359
88
1.9
86
81
9
201
27
23
19
28
1.98
55492--56155
45
14.9
45
85
5
868
31
24
16
27
1.97
55492--56159
90
7.5
90
88
3
958
30
24
16
27
1.97
55492--56156
179
3.7
180
86
3
952
30
24
16
27
1.96
57459--57516
6
10.0
6
82
14
68
1
13
1
82
0.82
57460--57516
17
3.3
17
85
7
71
1
12
1
84
0.79
57459--57518
23
2.6
23
86
5
77
1
13
1
83
0.80
57460--57518
11
5.2
11
82
8
73
1
11
1
84
0.77

Tables:   1

The End!