Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold3471
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58544
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.32
Found at i:2598 original size:23 final size:24
Alignment explanation
Indices: 2545--2591 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
2535 AGAATTAATT
*
2545 TTTAATAATAAAAATATATATAAA
1 TTTAATAATAAAAATATATACAAA
*
2569 TTTTAATAATAGAAATATATACA
1 -TTTAATAATAAAAATATATACA
2592 GATTAATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.38
Consensus pattern (24 bp):
TTTAATAATAAAAATATATACAAA
Found at i:5095 original size:36 final size:36
Alignment explanation
Indices: 5047--5242 Score: 260
Period size: 36 Copynumber: 5.6 Consensus size: 36
5037 TGTCCGAGTA
*
5047 AGCCTCGAATTCGCAGCCCCAGCCCCAGTCCAAGTC
1 AGCCTCGAATTCGCAGCCCCAGCCCCAGTCTAAGTC
* *
5083 GGCCTCGAATTCGCAGCTCCAGCCCCAGTCTAAGTC
1 AGCCTCGAATTCGCAGCCCCAGCCCCAGTCTAAGTC
* * *
5119 GGCCTCGAATTCGCAGCCCGAGCCCAAGTCTAAGTC
1 AGCCTCGAATTCGCAGCCCCAGCCCCAGTCTAAGTC
* * *
5155 AGCCTCGAATTCGTAGCCCGAGCCCAAGTCTAAGTC
1 AGCCTCGAATTCGCAGCCCCAGCCCCAGTCTAAGTC
*
5191 AGCCTCGAATT--C-G---CAGCCCCAGTCCAAGTC
1 AGCCTCGAATTCGCAGCCCCAGCCCCAGTCTAAGTC
5221 AGCCTCGAATTCGCAGCCCCAG
1 AGCCTCGAATTCGCAGCCCCAG
5243 ATCATGCCGC
Statistics
Matches: 142, Mismatches: 12, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
30 25 0.18
32 1 0.01
33 2 0.01
36 114 0.80
ACGTcount: A:0.22, C:0.39, G:0.22, T:0.17
Consensus pattern (36 bp):
AGCCTCGAATTCGCAGCCCCAGCCCCAGTCTAAGTC
Found at i:17773 original size:6 final size:6
Alignment explanation
Indices: 17762--17817 Score: 103
Period size: 6 Copynumber: 9.3 Consensus size: 6
17752 TTCTTTTCCG
*
17762 CCCGCA CCCGCA CCCGCA CCCGCA CCCACA CCCGCA CCCGCA CCCGCA
1 CCCGCA CCCGCA CCCGCA CCCGCA CCCGCA CCCGCA CCCGCA CCCGCA
17810 CCCGCA CC
1 CCCGCA CC
17818 TTTCTGTGTT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 48 1.00
ACGTcount: A:0.18, C:0.68, G:0.14, T:0.00
Consensus pattern (6 bp):
CCCGCA
Found at i:25132 original size:88 final size:88
Alignment explanation
Indices: 24983--25160 Score: 356
Period size: 88 Copynumber: 2.0 Consensus size: 88
24973 CATTATATTT
24983 ATACTAAACTAATTTATACTATTTTTTTAACTCTTATTAATAAAAAAATCGTAATATCCAAACTT
1 ATACTAAACTAATTTATACTATTTTTTTAACTCTTATTAATAAAAAAATCGTAATATCCAAACTT
25048 AAACCCTAAATAAATAAAACTAA
66 AAACCCTAAATAAATAAAACTAA
25071 ATACTAAACTAATTTATACTATTTTTTTAACTCTTATTAATAAAAAAATCGTAATATCCAAACTT
1 ATACTAAACTAATTTATACTATTTTTTTAACTCTTATTAATAAAAAAATCGTAATATCCAAACTT
25136 AAACCCTAAATAAATAAAACTAA
66 AAACCCTAAATAAATAAAACTAA
25159 AT
1 AT
25161 CCTCAAATTC
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
88 90 1.00
ACGTcount: A:0.49, C:0.15, G:0.01, T:0.35
Consensus pattern (88 bp):
ATACTAAACTAATTTATACTATTTTTTTAACTCTTATTAATAAAAAAATCGTAATATCCAAACTT
AAACCCTAAATAAATAAAACTAA
Found at i:25251 original size:15 final size:14
Alignment explanation
Indices: 25225--25269 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
25215 ACTCTAATCC
*
25225 TAAATCCTAAATAT
1 TAAATTCTAAATAT
25239 TAAATTTCTAAATAT
1 TAAA-TTCTAAATAT
* *
25254 TATATTCTAAGTAT
1 TAAATTCTAAATAT
25268 TA
1 TA
25270 TTTTACTATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
14 15 0.56
15 12 0.44
ACGTcount: A:0.44, C:0.09, G:0.02, T:0.44
Consensus pattern (14 bp):
TAAATTCTAAATAT
Found at i:25261 original size:14 final size:15
Alignment explanation
Indices: 25231--25270 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
25221 ATCCTAAATC
*
25231 CTAAATATTAAATTT
1 CTAAATATTATATTT
25246 CTAAATATTATA-TT
1 CTAAATATTATATTT
*
25260 CTAAGTATTAT
1 CTAAATATTAT
25271 TTTACTATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 12 0.52
15 11 0.48
ACGTcount: A:0.42, C:0.07, G:0.03, T:0.47
Consensus pattern (15 bp):
CTAAATATTATATTT
Found at i:38994 original size:95 final size:95
Alignment explanation
Indices: 38863--39053 Score: 258
Period size: 95 Copynumber: 2.0 Consensus size: 95
38853 AAAAAACTTA
* ** * *
38863 TTTTGGAAAAAATAAATTATATATAAGTTTTTAACACAAGTAAAACTATTACAATGGTCATAAAA
1 TTTTGGAAAAAATAAATTATATATAACTTTAAAACACAAGCAAAACTATTACAATGGTAATAAAA
* * *
38928 TCTAGTAGCATTTAAATAACTATAATTATT
66 GCTAGGAACATTTAAATAACTATAATTATT
* * *
38958 TTTTGGAAAAAA-AATTATATATATAACTTTAAAACACAAGCAAAACTTTTACAATGGTAATAAG
1 TTTTGGAAAAAATAAAT-TATATATAACTTTAAAACACAAGCAAAACTATTACAATGGTAATAAA
*
39022 AGCTAGGAACATTTAAATAATTATAATTATT
65 AGCTAGGAACATTTAAATAACTATAATTATT
39053 T
1 T
39054 ATTCAATTTC
Statistics
Matches: 83, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
94 3 0.04
95 80 0.96
ACGTcount: A:0.47, C:0.08, G:0.09, T:0.36
Consensus pattern (95 bp):
TTTTGGAAAAAATAAATTATATATAACTTTAAAACACAAGCAAAACTATTACAATGGTAATAAAA
GCTAGGAACATTTAAATAACTATAATTATT
Found at i:44026 original size:211 final size:210
Alignment explanation
Indices: 43479--44103 Score: 942
Period size: 211 Copynumber: 3.0 Consensus size: 210
43469 TGGGAACCCG
*
43479 ATTGAAATTTCCTAGCACTTTTCATCCACAAATAGATGGGCAAATAGAGGCTGTTAACCAAAGTT
1 ATTGAAATTTTCTAGCACTTTTCATCCACAAATAGATGGGCAAATAGAGGCTGTTAACCAAAGTT
*
43544 TAGGAAATA-GACTTAGGTGTCTTGTTTGGAATCATGTGAAGAGTTAGGATTTGGTTATTCCTCA
66 TAGGAAATATG-CTTAGGTGTCCTGTTTGGAATCATGTGAAGAGTTAGGATTTGGTTATTCCTCA
* *
43608 AGATGAGTTTACATGCAACTCTATGAATAGAACAATTAA-AATACACCTTTTGAAGCTACTTATG
130 AGATGAGTTTACATACAACTCT-TGAATAGAACAATTAAGAAGACACCTTTTGAAGCTACTTATG
* *
43672 GACTTAAACCTCAACCG
194 GACTCAAACCTCAACCA
* * * *
43689 ATTGAAATTTTCTAGCACTTTTCATCCAGAAATAAATGGGAAAATAGAGGATGTT-----AAGTT
1 ATTGAAATTTTCTAGCACTTTTCATCCACAAATAGATGGGCAAATAGAGGCTGTTAACCAAAGTT
* *
43749 TAGGAAATATGCTTAGGTGT-CTGGTTTGGAATCATGTAAAGAGTTAGGATTTGGTTAGTCCTCA
66 TAGGAAATATGCTTAGGTGTCCT-GTTTGGAATCATGTGAAGAGTTAGGATTTGGTTATTCCTCA
* * * *
43813 AGATGAGTTTACATTCAACTCTGTAAATAGAACAATTAAGAAGACACCTTTTAAAGCTACTTACG
130 AGATGAGTTTACATACAACTCT-TGAATAGAACAATTAAGAAGACACCTTTTGAAGCTACTTATG
43878 GACTCAAACCTCAACCA
194 GACTCAAACCTCAACCA
*
43895 ATTGAAATTTTCTAGCACTTTTCATCCACAAACAGATGGGCAAATAGAGGCTGTTAACCAAAGTT
1 ATTGAAATTTTCTAGCACTTTTCATCCACAAATAGATGGGCAAATAGAGGCTGTTAACCAAAGTT
*
43960 TAGGAAATATGCGTAGGTGTCCTGTTTGGAATCATGTGAAGAGTTAGGATTTGGTTATTCCTCAA
66 TAGGAAATATGCTTAGGTGTCCTGTTTGGAATCATGTGAAGAGTTAGGATTTGGTTATTCCTCAA
* * * * *
44025 GATGAGTTTACATACAACCCTTGGATTAGAACAATTATGAAGATACCTTTTGAAGCTAATTATGG
131 GATGAGTTTACATACAACTCTT-GAATAGAACAATTAAGAAGACACCTTTTGAAGCTACTTATGG
44090 ACTCAAACCTCAAC
195 ACTCAAACCTCAAC
44104 ATGTGCTTTA
Statistics
Matches: 372, Mismatches: 33, Indels: 19
0.88 0.08 0.04
Matches are distributed among these distances:
204 1 0.00
205 98 0.26
206 88 0.24
210 51 0.14
211 132 0.35
212 2 0.01
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (210 bp):
ATTGAAATTTTCTAGCACTTTTCATCCACAAATAGATGGGCAAATAGAGGCTGTTAACCAAAGTT
TAGGAAATATGCTTAGGTGTCCTGTTTGGAATCATGTGAAGAGTTAGGATTTGGTTATTCCTCAA
GATGAGTTTACATACAACTCTTGAATAGAACAATTAAGAAGACACCTTTTGAAGCTACTTATGGA
CTCAAACCTCAACCA
Found at i:52429 original size:22 final size:24
Alignment explanation
Indices: 52379--52429 Score: 61
Period size: 25 Copynumber: 2.2 Consensus size: 24
52369 CATTCATCCG
* *
52379 AAGTCCTAATTTAGAAAAAAAATTT
1 AAGTACTAATTTAGAAAAAAAA-TC
52404 AAGTACTAATTTA-AAAAAAAA-C
1 AAGTACTAATTTAGAAAAAAAATC
52426 AAGT
1 AAGT
52430 TTAGTTACCT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 4 0.17
24 8 0.33
25 12 0.50
ACGTcount: A:0.57, C:0.08, G:0.08, T:0.27
Consensus pattern (24 bp):
AAGTACTAATTTAGAAAAAAAATC
Found at i:56642 original size:7 final size:7
Alignment explanation
Indices: 56630--58544 Score: 3570
Period size: 7 Copynumber: 271.1 Consensus size: 7
56620 TATCCCAATT
56630 GTTTAGG
1 GTTTAGG
56637 GTTTAGG
1 GTTTAGG
56644 GTTTAGG
1 GTTTAGG
56651 GTTTAGG
1 GTTTAGG
56658 GTTTAGG
1 GTTTAGG
56665 GTTTAGG
1 GTTTAGG
56672 GTTTAGG
1 GTTTAGG
56679 GTTTAGG
1 GTTTAGG
56686 GTTTAGG
1 GTTTAGG
56693 GTTTAGG
1 GTTTAGG
56700 GTTTAGG
1 GTTTAGG
56707 GTTTAGG
1 GTTTAGG
56714 GTTTAGG
1 GTTTAGG
56721 GTTTAGG
1 GTTTAGG
56728 GTTTAGG
1 GTTTAGG
56735 GTTTAGG
1 GTTTAGG
56742 GTTTAGG
1 GTTTAGG
56749 GTTTAGG
1 GTTTAGG
56756 GTTTAGG
1 GTTTAGG
56763 GTTTAGG
1 GTTTAGG
56770 GTTTAGG
1 GTTTAGG
56777 GTTTAGG
1 GTTTAGG
56784 GTTTAGG
1 GTTTAGG
56791 GTTTAGG
1 GTTTAGG
56798 GTTTAGG
1 GTTTAGG
56805 GTTTTAGG
1 G-TTTAGG
56813 GTTTTAGG
1 G-TTTAGG
56821 GTTTTAGG
1 G-TTTAGG
56829 GTTTTAGG
1 G-TTTAGG
56837 GTTTAGG
1 GTTTAGG
56844 GTTTAGG
1 GTTTAGG
56851 GTTTAGG
1 GTTTAGG
56858 GTTTAGG
1 GTTTAGG
56865 GTTTAGG
1 GTTTAGG
56872 GTTTAGG
1 GTTTAGG
56879 GTTTAGG
1 GTTTAGG
56886 GTTTAGG
1 GTTTAGG
56893 GTTTAGG
1 GTTTAGG
56900 GTTTAGG
1 GTTTAGG
56907 GTTTAGG
1 GTTTAGG
56914 GTTTAGG
1 GTTTAGG
56921 GTTTAGG
1 GTTTAGG
56928 GTTTAGG
1 GTTTAGG
56935 GTTTAGG
1 GTTTAGG
56942 GTTTAGG
1 GTTTAGG
56949 GTTTAGG
1 GTTTAGG
56956 GTTTAGG
1 GTTTAGG
56963 GTTTAGG
1 GTTTAGG
56970 GTTTAGG
1 GTTTAGG
56977 GTTTAGG
1 GTTTAGG
56984 GTTTAGG
1 GTTTAGG
56991 GTTTAGG
1 GTTTAGG
56998 GTTTAGG
1 GTTTAGG
57005 GTTTAGG
1 GTTTAGG
57012 GTTTAGG
1 GTTTAGG
57019 GTTTAGG
1 GTTTAGG
57026 GTTTAGG
1 GTTTAGG
57033 GTTTAGG
1 GTTTAGG
57040 GTTTAGG
1 GTTTAGG
57047 GTTTAGG
1 GTTTAGG
57054 GTTTAGG
1 GTTTAGG
57061 GTTTAGG
1 GTTTAGG
57068 GTTTAGG
1 GTTTAGG
57075 GTTTAGG
1 GTTTAGG
57082 GTTTTAGG
1 G-TTTAGG
57090 GTTTAGG
1 GTTTAGG
57097 GTTTAGG
1 GTTTAGG
57104 GTTTAGG
1 GTTTAGG
57111 GTTTAGG
1 GTTTAGG
57118 GTTTAGG
1 GTTTAGG
57125 GTTTTAGG
1 G-TTTAGG
57133 GTTTAGG
1 GTTTAGG
57140 GTTTAGG
1 GTTTAGG
57147 GTTTAGG
1 GTTTAGG
57154 GTTTAGG
1 GTTTAGG
57161 GTTTTAGG
1 G-TTTAGG
57169 GTTTAGG
1 GTTTAGG
57176 GTTTTAGG
1 G-TTTAGG
57184 GTTTAGG
1 GTTTAGG
57191 GTTTAGG
1 GTTTAGG
57198 GTTTTAGG
1 G-TTTAGG
57206 GTTTAGG
1 GTTTAGG
57213 GTTTAGG
1 GTTTAGG
57220 GTTTAGG
1 GTTTAGG
57227 GTTTAGG
1 GTTTAGG
57234 GTTTAGG
1 GTTTAGG
57241 GTTTAGG
1 GTTTAGG
57248 GTTTAGG
1 GTTTAGG
57255 GTTTAGG
1 GTTTAGG
57262 GTTTAGG
1 GTTTAGG
57269 GTTTAGG
1 GTTTAGG
57276 GTTTAGG
1 GTTTAGG
57283 GTTTAGG
1 GTTTAGG
57290 GTTTAGG
1 GTTTAGG
57297 GTTTAGG
1 GTTTAGG
57304 GTTTAGG
1 GTTTAGG
57311 GTTTAGG
1 GTTTAGG
57318 GTTTAGG
1 GTTTAGG
57325 GTTTAGG
1 GTTTAGG
57332 GTTTAGG
1 GTTTAGG
57339 GTTTAGG
1 GTTTAGG
57346 GTTTAGG
1 GTTTAGG
57353 GTTTAGG
1 GTTTAGG
57360 GTTTAGG
1 GTTTAGG
57367 GTTTAGG
1 GTTTAGG
57374 GTTTTAGG
1 G-TTTAGG
57382 GTTTTAGG
1 G-TTTAGG
57390 GTTTAGG
1 GTTTAGG
57397 GTTTAGG
1 GTTTAGG
57404 GTTTAGG
1 GTTTAGG
57411 GTTTAGG
1 GTTTAGG
57418 GTTTAGG
1 GTTTAGG
57425 GTTTAGG
1 GTTTAGG
57432 G-TTAGG
1 GTTTAGG
57438 GTTTAGG
1 GTTTAGG
57445 GTTTAGG
1 GTTTAGG
57452 GTTTAGG
1 GTTTAGG
57459 GTTTAGG
1 GTTTAGG
57466 GTTTAGG
1 GTTTAGG
57473 GTTTAGG
1 GTTTAGG
57480 GTTTAGG
1 GTTTAGG
57487 GTTTAGG
1 GTTTAGG
57494 GTTTAGG
1 GTTTAGG
57501 GTTTAGG
1 GTTTAGG
57508 GTTTTAGG
1 G-TTTAGG
57516 GTTTAGG
1 GTTTAGG
57523 GTTTAGG
1 GTTTAGG
57530 GTTTAGG
1 GTTTAGG
57537 GTTTAGG
1 GTTTAGG
57544 GTTTAGG
1 GTTTAGG
57551 GTTTAGG
1 GTTTAGG
57558 GTTTAGG
1 GTTTAGG
57565 GTTTAGG
1 GTTTAGG
57572 GTTTAGG
1 GTTTAGG
57579 GTTTTAGG
1 G-TTTAGG
57587 GTTTAGG
1 GTTTAGG
57594 GTTTAGG
1 GTTTAGG
57601 GTTTAGG
1 GTTTAGG
57608 GTTTAGG
1 GTTTAGG
57615 GTTTAGG
1 GTTTAGG
57622 GTTTA-G
1 GTTTAGG
57628 GTTTAGG
1 GTTTAGG
57635 GTTTAGG
1 GTTTAGG
57642 GTTTAGG
1 GTTTAGG
57649 GTTTAGG
1 GTTTAGG
57656 GTTTAGG
1 GTTTAGG
57663 GTTTAGG
1 GTTTAGG
57670 GTTTAGG
1 GTTTAGG
57677 GTTTAGG
1 GTTTAGG
57684 GTTTAGG
1 GTTTAGG
57691 GTTTAGG
1 GTTTAGG
57698 GTTTAGG
1 GTTTAGG
57705 GTTTAGG
1 GTTTAGG
57712 GTTTTAGG
1 G-TTTAGG
57720 GTTTAGG
1 GTTTAGG
57727 GTTTAGG
1 GTTTAGG
57734 GTTTTTAGG
1 G--TTTAGG
57743 GTTTAGG
1 GTTTAGG
57750 GTTTAGG
1 GTTTAGG
57757 GTTTAGG
1 GTTTAGG
57764 GTTTTAGG
1 G-TTTAGG
57772 GTTTTAGG
1 G-TTTAGG
57780 GTTTAGG
1 GTTTAGG
57787 GTTTAGG
1 GTTTAGG
57794 GTTTAGG
1 GTTTAGG
57801 GTTTAGG
1 GTTTAGG
57808 GTTTAGG
1 GTTTAGG
57815 GTTTAGG
1 GTTTAGG
57822 GTTTAGG
1 GTTTAGG
57829 GTTTTAGG
1 G-TTTAGG
57837 GTTTAGG
1 GTTTAGG
57844 GTTTAGG
1 GTTTAGG
57851 GTTTAGG
1 GTTTAGG
57858 GTTTAGG
1 GTTTAGG
57865 GTTTAGG
1 GTTTAGG
57872 GTTTAGG
1 GTTTAGG
57879 GTTTAGG
1 GTTTAGG
57886 GTTTAGG
1 GTTTAGG
57893 GTTTAGG
1 GTTTAGG
57900 GTTTAGG
1 GTTTAGG
57907 GTTTAGG
1 GTTTAGG
57914 GTTTAGG
1 GTTTAGG
57921 GTTTAGG
1 GTTTAGG
57928 GTTTAGG
1 GTTTAGG
57935 GTTTAGG
1 GTTTAGG
57942 GTTTAGG
1 GTTTAGG
57949 GTTTAGG
1 GTTTAGG
57956 GTTTAGG
1 GTTTAGG
57963 GTTTAGG
1 GTTTAGG
57970 GTTTAGG
1 GTTTAGG
57977 GTTTAGG
1 GTTTAGG
57984 GTTTAGG
1 GTTTAGG
57991 GTTTTAGG
1 G-TTTAGG
57999 GTTTAGG
1 GTTTAGG
58006 GTTTAGG
1 GTTTAGG
58013 GTTTAGG
1 GTTTAGG
58020 GTTTAGG
1 GTTTAGG
58027 GTTTAGG
1 GTTTAGG
58034 GTTTAGG
1 GTTTAGG
58041 GTTTAGG
1 GTTTAGG
58048 GTTTAGG
1 GTTTAGG
58055 GTTTAGG
1 GTTTAGG
58062 GTTTAGG
1 GTTTAGG
*
58069 GGTTAGG
1 GTTTAGG
58076 GTTTAGG
1 GTTTAGG
58083 GTTTAGG
1 GTTTAGG
58090 GTTTAGG
1 GTTTAGG
58097 GTTTAGG
1 GTTTAGG
58104 GTTTAGG
1 GTTTAGG
58111 GTTTAGG
1 GTTTAGG
58118 GTTTAGG
1 GTTTAGG
58125 GTTTAGG
1 GTTTAGG
58132 GTTTAGG
1 GTTTAGG
58139 GTTTAGG
1 GTTTAGG
58146 GTTTTAGG
1 G-TTTAGG
58154 GTTTAGG
1 GTTTAGG
58161 GTTTAGG
1 GTTTAGG
58168 GTTTAGG
1 GTTTAGG
58175 GTTTAGG
1 GTTTAGG
58182 GTTTAGG
1 GTTTAGG
*
58189 GTTTTGG
1 GTTTAGG
58196 GTTTAGG
1 GTTTAGG
58203 GTTTAGG
1 GTTTAGG
58210 GTTTTAGG
1 G-TTTAGG
58218 GTTTAGG
1 GTTTAGG
58225 GTTTA-G
1 GTTTAGG
58231 GTTTAGG
1 GTTTAGG
58238 GTTTAGG
1 GTTTAGG
58245 GTTTAGG
1 GTTTAGG
58252 GTTTAGG
1 GTTTAGG
58259 GTTTAGG
1 GTTTAGG
58266 GTTTAGG
1 GTTTAGG
58273 GTTTAGG
1 GTTTAGG
58280 GTTTAGG
1 GTTTAGG
58287 GTTTAGG
1 GTTTAGG
58294 GTTTAGG
1 GTTTAGG
58301 GTTTAGG
1 GTTTAGG
58308 GTTTAGG
1 GTTTAGG
58315 GTTTAGG
1 GTTTAGG
58322 GTTTAGG
1 GTTTAGG
58329 GTTTAGG
1 GTTTAGG
58336 GTTTAGG
1 GTTTAGG
58343 GTTTAGG
1 GTTTAGG
58350 GTTTAGG
1 GTTTAGG
58357 GTTTAGG
1 GTTTAGG
58364 GTTTAGG
1 GTTTAGG
58371 GTTTAGG
1 GTTTAGG
58378 GTTTAGG
1 GTTTAGG
58385 GTTTAGG
1 GTTTAGG
58392 GTTTAGG
1 GTTTAGG
58399 GTTTAGG
1 GTTTAGG
58406 GTTTAGG
1 GTTTAGG
58413 GTTTAGG
1 GTTTAGG
58420 GTTTAGG
1 GTTTAGG
58427 GTTTAGG
1 GTTTAGG
58434 GTTTAGG
1 GTTTAGG
58441 GTTTAGG
1 GTTTAGG
58448 GTTTAGG
1 GTTTAGG
58455 GTTTAGG
1 GTTTAGG
58462 GTTTAGG
1 GTTTAGG
58469 GTTTAGG
1 GTTTAGG
58476 GTTTAGG
1 GTTTAGG
58483 GTTTAGG
1 GTTTAGG
58490 GTTTAGG
1 GTTTAGG
58497 G--TAGG
1 GTTTAGG
58502 GTTTAGG
1 GTTTAGG
58509 GTTTAGG
1 GTTTAGG
58516 GTTTAGG
1 GTTTAGG
58523 GTTTAGG
1 GTTTAGG
58530 GTTTAGG
1 GTTTAGG
*
58537 GTTCAGG
1 GTTTAGG
58544 G
1 G
Statistics
Matches: 1881, Mismatches: 5, Indels: 44
0.97 0.00 0.02
Matches are distributed among these distances:
5 5 0.00
6 18 0.01
7 1706 0.91
8 145 0.08
9 7 0.00
ACGTcount: A:0.14, C:0.00, G:0.42, T:0.43
Consensus pattern (7 bp):
GTTTAGG
Done.