Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3614
Parameters: 2 7 7 80 10 50 1000
Length:  54944

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8622--8718
30
3.2
30
75
2
106
27
26
16
28
1.97
10399--10437
12
3.2
12
96
0
69
76
5
2
15
1.06
10380--10453
30
2.7
25
78
17
76
78
2
5
13
1.03
10393--10450
30
1.9
31
85
3
82
77
3
5
13
1.07
11341--11400
5
12.0
5
77
13
61
76
1
18
3
1.00
11448--11478
12
2.6
12
100
0
62
45
12
16
25
1.83
13597--13692
30
3.2
30
75
4
106
28
27
15
29
1.96
16814--16860
20
2.3
20
85
0
67
21
12
36
29
1.91
18528--18633
48
2.2
48
85
9
137
14
24
1
59
1.45
21248--21294
20
2.3
20
85
0
67
21
12
36
29
1.91
23903--23949
20
2.3
20
85
0
67
21
12
36
29
1.91
28087--28142
15
3.6
16
92
7
98
21
12
3
62
1.45
28185--28211
10
2.7
10
100
0
54
14
0
7
77
0.97
28530--28623
46
2.0
46
91
4
154
34
22
18
25
1.96
32081--32153
30
2.5
30
86
10
114
31
13
24
30
1.94
32100--32165
30
2.2
30
84
10
82
27
15
31
25
1.95
34318--34348
12
2.6
12
100
0
62
25
16
12
45
1.83
34409--34458
6
8.2
6
81
16
50
2
20
2
76
0.99
34398--34468
37
1.9
37
86
11
101
2
18
2
76
1.04
34394--34454
16
3.8
16
77
14
63
3
19
1
75
1.03
35374--35403
10
2.8
11
95
5
53
13
0
6
80
0.91
37102--37174
30
2.5
30
86
10
114
31
13
24
30
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37121--37186
30
2.2
30
84
10
82
27
15
31
25
1.95
39749--39882
67
2.0
69
91
4
218
33
12
25
28
1.92
40828--40890
21
3.0
21
88
2
90
30
3
33
33
1.74
50175--50239
22
2.9
22
93
2
103
32
33
4
29
1.78
50545--50605
10
6.2
10
77
11
72
70
0
8
21
1.13
50547--50605
11
5.9
11
77
18
67
72
0
6
20
1.06
50558--50601
18
2.4
18
84
3
61
77
0
4
18
0.94
52812--52856
19
2.3
20
84
7
65
77
2
13
6
1.05
52875--52904
15
2.1
15
93
6
53
73
0
20
6
1.05

Tables:   1

The End!