Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1177
Parameters: 2 7 7 80 10 50 1000
Length:  42623

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3094--3123
15
2.0
15
93
0
51
20
10
3
66
1.35
3097--3143
12
3.5
13
80
11
51
10
8
4
76
1.13
3095--3158
27
2.4
26
76
5
74
17
9
3
70
1.27
9643--9696
24
2.2
25
78
15
60
11
22
3
62
1.43
11950--12023
13
5.8
13
77
19
75
13
9
4
72
1.23
11951--11996
23
2.0
23
91
0
74
10
8
4
76
1.15
11975--12026
27
1.9
27
88
7
79
17
9
5
67
1.38
11950--12023
12
5.8
13
73
24
68
13
9
4
72
1.23
14393--14439
20
2.3
20
85
0
67
29
36
12
21
1.91
15001--15078
21
3.4
23
74
8
70
26
2
30
39
1.70
15037--15103
21
3.1
21
82
4
80
29
2
32
34
1.73
19345--19399
17
3.2
17
76
5
56
9
12
3
74
1.18
19360--19411
18
2.7
19
85
11
63
5
13
3
76
1.10
21584--21635
14
3.8
14
85
12
72
15
7
1
75
1.12
21589--21621
12
2.8
12
100
0
66
12
6
0
81
0.85
21584--21635
26
2.0
26
92
0
86
15
7
1
75
1.12
21898--21975
21
3.4
23
74
8
70
26
2
30
39
1.70
21934--22000
21
3.1
21
82
4
80
29
2
32
34
1.73
24558--24617
13
4.5
13
76
15
61
75
5
5
15
1.15
24558--24628
11
5.7
12
74
19
56
74
4
7
14
1.18
24558--24643
39
2.2
40
83
10
106
73
5
8
12
1.24
24621--24658
16
2.4
16
86
8
51
71
7
15
5
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25692--25799
6
17.7
6
68
6
65
70
3
19
6
1.25
25696--25754
18
3.3
18
80
0
73
71
6
16
5
1.26
25760--25797
13
2.8
13
82
17
51
73
0
18
7
1.06
25761--25811
21
2.4
21
74
6
50
74
1
17
5
1.11
25713--25817
27
3.8
27
71
9
77
68
2
20
8
1.29
25880--25985
48
2.2
47
85
9
135
59
1
24
14
1.45
29235--29281
20
2.3
20
85
0
67
29
36
12
21
1.91
35635--35672
20
1.9
19
85
15
51
10
18
28
42
1.83
39321--39374
20
2.7
20
82
0
63
24
20
18
37
1.94
39321--39394
30
2.5
30
86
8
98
21
20
18
39
1.93
39321--39385
20
3.2
20
71
16
53
23
21
16
38
1.93
41924--41958
17
2.0
18
88
5
54
17
8
28
45
1.77

Tables:   1

The End!