genome.fa.s102.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1813
Parameters: 2 7 7 80 10 50 1000
Length:  124800

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
330--446	22	5.2	23	74	14	102	30	21	17	30	1.96
493--559	20	3.3	20	87	2	98	29	20	13	35	1.91
493--547	11	5.4	11	75	16	64	29	20	14	36	1.92
20100--20233	49	2.7	49	83	2	178	35	20	16	28	1.94
21077--21206	39	3.3	39	91	0	197	24	27	19	28	1.98
28879--29010	39	3.4	39	89	0	192	25	27	18	28	1.98
33716--33740	6	4.2	6	100	0	50	80	0	0	20	0.72
33740--33768	5	5.8	5	100	0	58	20	0	0	79	0.74
34361--34405	20	2.2	20	88	0	63	48	2	13	35	1.54
41432--41614	66	2.8	64	77	9	194	30	17	29	22	1.97
47620--47672	27	2.0	27	100	0	106	33	16	18	30	1.94
58339--58603	27	9.8	27	88	2	345	41	7	20	30	1.79
58582--58725	27	5.3	26	77	9	92	28	8	22	40	1.82
58583--58756	54	3.2	53	78	6	181	28	9	22	40	1.84
58626--58749	27	4.7	25	75	12	88	27	8	23	40	1.84
60817--60876	27	2.3	26	85	2	75	35	20	23	21	1.96
60877--60920	21	2.0	22	82	4	54	36	20	22	20	1.95
61649--61950	27	11.2	27	85	0	361	38	7	23	31	1.82
61649--61950	81	3.7	81	89	0	451	38	7	23	31	1.82
61974--62096	27	4.6	27	77	12	110	29	9	21	39	1.85
61943--62075	54	2.5	54	77	4	142	30	11	20	38	1.87
67165--67321	43	3.7	43	78	9	151	22	19	26	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81850--81906	26	2.2	26	79	11	64	19	10	19	50	1.75
81891--81949	15	3.9	15	77	2	64	13	16	13	55	1.68
83145--83204	28	2.1	28	84	6	77	16	18	16	48	1.82
86386--86433	25	1.9	25	82	0	60	27	0	25	47	1.52
88914--88952	14	2.9	13	81	7	51	61	10	10	17	1.55
97177--97215	14	2.9	13	81	7	51	61	10	10	17	1.55
100507--100753	48	5.2	48	77	9	245	27	24	19	27	1.99
102665--102855	29	6.4	30	72	12	108	20	24	12	42	1.86
102607--102877	120	2.3	119	82	3	355	23	22	12	41	1.88
102607--102877	30	9.1	30	70	13	123	23	22	12	41	1.88
108633--108658	13	2.0	13	100	0	52	30	0	7	61	1.24
110029--110229	40	5.1	40	93	3	329	22	22	26	28	1.99
116714--116739	13	2.0	13	100	0	52	30	0	7	61	1.24
118082--118287	40	5.2	40	94	1	353	22	22	27	27	1.99

Tables:   1

The End!