Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold454
Parameters: 2 7 7 80 10 50 1000
Length:  169753

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5379--5430
27
1.9
27
84
0
68
65
1
25
7
1.30
9587--9623
15
2.5
15
95
0
65
10
13
0
75
1.04
9957--10022
21
3.0
22
82
4
71
30
3
30
36
1.73
22265--22316
23
2.3
22
75
21
54
9
23
1
65
1.32
22310--22348
18
2.2
18
85
0
51
12
23
2
61
1.43
24711--24738
4
7.0
4
100
0
56
75
0
0
25
0.81
26891--26928
19
2.0
19
100
0
76
21
21
21
36
1.95
40311--40385
33
2.2
34
90
2
116
42
12
6
38
1.68
43766--43830
20
3.3
19
73
16
51
38
16
21
23
1.93
45607--45669
33
1.9
33
84
12
85
12
25
6
55
1.60
45699--45772
26
3.2
22
76
22
64
6
18
0
74
1.04
45723--45749
14
1.9
14
100
0
54
7
18
0
74
1.05
45713--45781
21
2.9
24
79
18
81
8
20
0
71
1.12
46931--46959
10
2.7
11
94
5
51
6
3
6
82
0.93
48468--48532
20
3.3
19
73
16
51
38
16
21
23
1.93
53755--53788
6
5.7
6
96
0
50
44
23
0
32
1.54
53796--53840
20
2.2
20
84
4
54
8
26
0
64
1.23
54730--54777
20
2.3
21
89
3
71
14
4
4
77
1.08
54770--54794
13
1.9
13
100
0
50
0
16
0
84
0.63
54835--54882
14
3.4
14
97
0
87
12
2
6
79
1.01
58793--58838
24
2.0
24
83
12
60
10
26
0
63
1.27
60432--60488
30
1.9
30
82
7
71
38
15
14
31
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60471--60564
43
2.2
44
90
1
145
31
15
22
29
1.95
66874--66934
20
3.1
19
77
17
61
29
22
13
34
1.92
66873--66930
10
5.7
10
72
11
55
29
25
13
31
1.94
69208--69242
18
1.9
18
88
11
54
57
0
20
22
1.41
71311--71368
10
5.7
10
76
11
64
29
27
13
29
1.94
71311--71371
20
3.0
20
83
9
79
27
26
13
32
1.93
73743--73807
20
3.3
19
73
16
51
38
16
21
23
1.93
75627--75690
23
2.8
23
85
4
85
37
26
6
29
1.81
79728--79758
11
2.8
11
100
0
62
74
0
6
19
1.03
79796--79853
16
3.6
16
97
2
107
63
1
12
22
1.37
94910--94992
10
7.9
10
76
10
76
33
32
2
31
1.71
94910--94993
21
4.0
21
92
1
123
33
33
2
30
1.71
97653--97714
23
2.7
23
84
0
79
37
25
6
30
1.81
104236--104329
46
2.0
46
93
4
163
24
18
22
35
1.96
104643--104686
11
4.0
11
90
0
61
65
13
6
13
1.44
104725--104763
13
2.9
14
92
7
71
64
0
12
23
1.28
109609--109646
19
2.0
19
100
0
76
36
21
21
21
1.95
109971--110065
47
2.0
47
92
6
158
25
17
22
34
1.96
110441--110484
22
2.0
22
90
0
70
36
4
36
22
1.75
114677--114730
17
3.2
17
81
0
63
7
12
3
75
1.14
117256--117299
22
2.0
22
95
0
79
34
6
36
22
1.81
119228--119268
11
3.8
11
84
9
50
82
2
9
4
0.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
120250--120389
6
22.3
6
64
8
55
68
2
20
8
1.29
120251--120344
18
5.4
18
73
7
77
68
4
19
8
1.33
120282--120401
12
9.6
12
72
14
66
70
4
18
6
1.25
120250--120404
81
1.9
83
81
6
190
67
3
20
9
1.32
120350--120387
13
2.8
13
82
17
51
73
0
18
7
1.06
120351--120401
21
2.4
21
74
6
50
74
1
17
5
1.11
120404--120466
33
1.9
33
84
12
85
53
6
26
12
1.62
129623--129688
21
3.0
22
86
4
80
30
4
30
34
1.78
132170--132210
16
2.6
16
96
0
73
17
29
7
46
1.74
132432--132485
20
2.7
20
82
0
63
24
20
18
37
1.94
132432--132505
30
2.5
30
86
8
98
21
20
18
39
1.93
132432--132496
20
3.2
20
71
16
53
23
21
16
38
1.93
134100--134135
11
3.2
11
88
7
54
75
5
2
16
1.12
134100--134135
12
3.1
12
92
4
56
75
5
2
16
1.12
135139--135192
18
2.9
18
78
13
65
77
5
11
5
1.10
135252--135314
33
1.9
33
84
12
85
55
6
25
12
1.60
137090--137143
20
2.7
20
82
0
63
24
20
18
37
1.94
137090--137163
30
2.5
30
86
8
98
21
20
18
39
1.93
137090--137154
20
3.2
20
71
16
53
23
21
16
38
1.93
138512--138555
22
2.0
22
95
0
79
34
4
36
25
1.76
142830--142871
19
2.2
19
91
0
66
7
11
2
78
1.04
144097--144198
30
3.4
29
72
7
98
31
15
25
27
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
146378--146408
12
2.6
12
100
0
62
25
16
12
45
1.83
146456--146524
27
2.6
25
80
8
84
4
18
2
73
1.12
147406--147436
12
2.6
12
100
0
62
45
12
16
25
1.83
148480--148523
22
2.0
22
95
0
79
34
4
36
25
1.76
150316--150362
23
2.1
23
84
7
62
51
12
4
31
1.59
154252--154282
4
8.0
4
92
7
55
77
0
0
22
0.77
155339--155416
21
3.4
23
74
8
70
26
2
30
39
1.70
155375--155441
21
3.1
21
82
4
80
29
2
32
34
1.73
161948--161998
14
3.7
14
84
12
70
13
7
1
76
1.09
162261--162338
21
3.4
23
74
8
70
26
2
30
39
1.70
162297--162363
21
3.1
21
82
4
80
29
2
32
34
1.73
168330--168550
40
5.6
39
82
6
216
24
27
21
26
2.00
168328--168550
80
2.8
78
80
8
238
25
27
21
26
1.99
168482--168559
40
1.9
41
82
10
97
26
28
20
24
1.99

Tables:   1

The End!