genome.fa.s1028.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold731
Parameters: 2 7 7 80 10 50 1000
Length:  143317

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10658--10688	15	2.1	15	94	5	55	29	0	0	70	0.87
10673--10712	20	2.0	20	85	0	53	52	0	0	47	1.00
10915--10955	22	1.9	21	85	5	55	65	14	14	4	1.42
12927--12958	12	2.8	12	95	4	57	34	0	0	65	0.93
15362--15397	16	2.2	16	100	0	72	16	44	11	27	1.82
21625--21657	16	2.0	17	88	5	50	72	0	0	27	0.85
33677--33702	2	13.0	2	100	0	52	50	0	50	0	1.00
34592--35225	174	3.7	172	86	5	820	35	9	11	42	1.74
35189--37049	201	9.4	201	78	9	1709	37	9	10	42	1.73
35780--37013	204	6.2	202	79	9	1186	37	9	10	42	1.72
35059--36891	592	3.1	593	82	5	2190	36	10	10	42	1.74
35789--36869	396	2.7	389	85	5	1350	36	9	10	43	1.72
37781--37808	6	4.7	6	100	0	56	14	0	14	71	1.15
38787--38817	2	15.5	2	100	0	62	48	0	0	51	1.00
39732--39769	17	2.1	19	80	14	53	34	2	5	57	1.35
39734--39774	18	2.3	18	87	4	57	34	2	4	58	1.32
40218--40280	30	2.1	30	90	0	99	57	14	4	23	1.56
40310--40352	22	2.0	22	90	0	68	58	9	11	20	1.61
40318--40365	22	2.2	22	81	7	53	62	8	14	14	1.53
41647--41736	46	2.0	46	88	0	135	47	5	18	27	1.71
43358--43383	2	13.0	2	100	0	52	50	0	0	50	1.00
45794--45923	64	2.0	64	98	0	251	28	18	16	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50327--50623	133	2.2	134	84	7	372	29	21	13	34	1.92
53275--53321	21	2.2	22	92	3	78	21	38	19	21	1.94
56902--56996	30	3.2	29	68	21	81	36	10	11	41	1.76
56891--57008	58	2.0	58	95	0	209	40	11	9	38	1.73
57122--57166	23	1.9	24	81	4	56	46	2	6	44	1.42
59235--59306	22	3.3	22	68	0	54	61	5	5	27	1.41
60678--60711	14	2.4	14	90	9	52	61	0	0	38	0.96
61592--61639	26	1.9	24	84	16	62	72	6	0	20	1.05
66484--66515	2	16.0	2	100	0	64	0	0	50	50	1.00
67989--68043	25	2.1	27	87	12	80	60	0	0	40	0.97
67989--68043	27	2.1	27	90	6	87	60	0	0	40	0.97
79577--79603	11	2.5	11	100	0	54	55	0	0	44	0.99
81486--81546	21	2.9	21	70	0	50	37	14	27	19	1.91
84564--84602	4	9.8	4	100	0	78	48	25	0	25	1.51
93044--93090	19	2.6	18	74	16	51	63	2	6	27	1.30
93755--93794	17	2.3	18	83	12	57	67	0	5	27	1.11
94177--94247	18	3.7	19	69	19	58	23	4	1	70	1.13
97237--97285	19	2.5	19	87	9	64	55	8	0	36	1.30
105620--105667	19	2.5	19	93	0	78	20	20	20	37	1.95
110059--110197	42	3.3	42	82	2	163	44	18	20	15	1.86
110091--110214	21	6.0	21	67	8	65	41	16	22	19	1.89
111375--111416	21	2.0	21	85	0	57	45	14	0	40	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111927--112029	51	2.0	51	94	0	179	37	18	8	34	1.82
112179--112227	22	2.2	22	96	0	89	16	18	2	63	1.41
112288--112342	27	2.0	27	100	0	110	30	21	10	36	1.88
114233--114266	17	2.0	17	94	0	59	11	26	5	55	1.58
118794--118856	19	3.3	19	77	16	67	61	4	1	31	1.26
118793--118837	20	2.2	21	88	4	65	64	4	2	28	1.25
118794--118865	19	3.7	18	77	17	65	59	6	1	31	1.32
118861--118913	27	2.0	26	82	10	63	56	1	0	41	1.10
138258--138285	6	4.7	6	100	0	56	35	17	14	32	1.90
140878--140941	33	1.9	33	81	12	78	50	1	1	46	1.20

Tables:   1

The End!