genome.fa.s103.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2037
Parameters: 2 7 7 80 10 50 1000
Length:  122848

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6061--6245	79	2.3	81	84	7	236	24	22	27	25	2.00
6062--6245	40	4.6	40	83	9	216	24	22	27	25	2.00
6114--6278	79	2.1	79	84	6	210	26	21	27	25	1.99
12129--12179	20	2.5	20	93	0	84	15	29	33	21	1.94
18423--18546	46	2.7	45	81	12	137	19	21	30	28	1.98
31653--31721	34	2.0	34	97	0	129	21	7	31	39	1.81
36842--36980	39	3.6	39	79	2	122	30	11	21	35	1.89
39436--39478	19	2.3	19	87	0	59	16	16	27	39	1.90
42354--42406	27	2.0	27	92	0	88	28	28	7	35	1.84
42499--42642	31	4.6	31	85	0	189	25	26	18	29	1.98
42635--42745	32	3.5	32	83	9	138	25	23	13	37	1.91
44390--44442	11	4.7	11	75	13	54	64	3	0	32	1.12
44390--44455	34	2.0	33	82	8	82	59	4	0	36	1.18
45874--45933	29	2.1	29	100	0	120	40	13	26	20	1.89
49648--49879	49	4.7	49	79	5	259	29	25	18	27	1.98
49639--49870	101	2.3	98	81	5	261	30	24	18	27	1.98
51227--51277	16	3.2	16	88	0	75	47	19	23	9	1.79
51488--51612	29	4.3	29	85	3	164	24	14	30	31	1.94
54376--54419	21	2.1	21	83	8	54	38	0	34	27	1.57
55212--55336	29	4.3	29	82	1	153	27	15	27	30	1.96
68818--68859	20	2.1	20	100	0	84	52	9	4	33	1.55
76012--76051	20	2.0	20	85	9	55	12	20	7	60	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88732--89099	45	8.1	45	69	17	201	30	17	23	28	1.97
88851--89049	41	4.5	42	70	19	154	30	18	20	30	1.96
88750--89154	137	3.0	137	89	0	605	30	17	22	29	1.96
90058--90082	9	2.8	9	100	0	50	12	40	24	24	1.88
95709--95762	20	2.7	20	97	0	99	12	31	37	18	1.89
96283--96314	15	2.0	17	88	11	50	43	31	0	25	1.55
102737--102803	15	4.6	15	80	10	68	70	1	2	25	1.10
102751--102803	22	2.4	22	75	6	63	69	0	3	26	1.05
103232--103282	26	2.0	26	96	0	93	43	9	1	45	1.48
103853--103895	22	2.0	21	86	13	61	55	0	2	41	1.12
111206--111297	44	2.1	44	93	4	159	36	4	17	41	1.69
112666--112772	48	2.2	48	89	0	160	39	21	14	24	1.91
114146--114363	40	5.5	40	83	4	239	25	27	22	25	2.00
121400--121616	40	5.5	39	91	4	298	24	27	23	23	2.00

Tables:   1

The End!