genome.fa.s1036.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3598
Parameters: 2 7 7 80 10 50 1000
Length:  50740

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
165--236	29	2.5	28	84	11	92	27	15	30	26	1.96
195--521	174	1.9	175	87	4	491	30	14	23	31	1.94
7965--8042	29	2.7	28	84	11	104	25	15	30	28	1.96
7995--8318	172	1.9	172	92	1	542	30	14	23	31	1.94
12053--12109	24	2.4	24	77	11	64	8	19	1	70	1.23
14257--14365	38	2.8	39	87	2	148	33	11	11	44	1.77
14257--14372	39	3.0	38	87	2	151	33	11	11	43	1.76
14432--14481	23	2.2	23	85	0	64	30	12	14	44	1.81
16707--16755	23	2.1	23	100	0	98	20	18	12	48	1.79
17373--17452	27	3.0	27	87	5	101	38	12	23	25	1.90
21064--21143	31	2.5	32	82	6	83	26	26	15	32	1.95
23292--23461	29	5.9	29	81	3	132	36	22	15	25	1.93
23292--23464	58	3.0	58	78	5	156	36	22	15	25	1.93
23561--24012	227	2.0	227	89	0	690	29	23	13	33	1.93
26847--26942	42	2.3	42	90	0	156	33	15	13	37	1.87
28165--28193	12	2.4	12	100	0	58	6	24	41	27	1.80
28762--28986	20	11.2	20	68	9	127	36	17	31	14	1.90
28751--28986	40	5.9	39	85	4	301	37	16	30	14	1.90
36557--36698	51	2.8	51	81	3	169	30	26	17	24	1.97
41129--41306	27	6.6	27	84	3	205	29	28	15	26	1.96
41150--41305	82	1.9	81	88	3	233	29	28	15	26	1.96
49295--49470	27	6.6	27	82	8	189	30	28	15	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49295--49470	53	3.3	53	81	8	196	30	28	15	25	1.96

Tables:   1

The End!