genome.fa.s104.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold491
Parameters: 2 7 7 80 10 50 1000
Length:  121303

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17441--17618	27	6.6	27	84	3	205	29	28	15	26	1.96
17462--17617	82	1.9	81	88	3	233	29	28	15	26	1.96
33229--33398	46	3.7	46	76	12	179	22	20	28	29	1.98
33616--33653	19	2.0	20	85	15	53	36	0	23	39	1.55
40734--40861	46	2.8	46	84	0	175	21	19	26	32	1.97
41084--41121	18	2.1	19	85	14	53	34	0	23	42	1.55
42564--42613	25	2.0	25	88	7	75	38	22	0	40	1.54
47745--47770	13	2.0	13	100	0	52	46	15	7	30	1.74
47800--47831	17	1.9	16	93	6	55	25	37	18	18	1.94
59655--59703	15	3.3	15	85	2	64	10	18	12	59	1.60
62071--62243	45	3.8	45	78	15	203	21	21	28	28	1.98
62068--62235	91	1.8	92	92	3	286	21	22	28	27	1.99
67345--67450	47	2.3	47	88	0	167	34	12	24	28	1.91
67429--67679	54	4.6	54	82	3	308	36	17	23	22	1.95
77831--77868	19	2.0	20	84	5	51	42	0	36	21	1.53
79793--79933	51	2.8	51	79	4	151	29	27	17	26	1.97
79892--80030	50	2.7	51	84	1	172	28	27	19	24	1.98
80312--80374	30	2.1	30	82	2	74	41	19	7	31	1.80
81197--81224	14	2.0	14	100	0	56	28	14	7	50	1.69
83193--83256	31	2.1	31	87	0	92	26	18	14	40	1.89
83476--83546	26	2.8	26	85	4	92	29	21	23	25	1.99
83468--83546	26	3.2	25	83	5	90	29	20	21	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87665--88199	47	11.1	47	88	4	764	31	12	30	26	1.92
87665--88199	98	5.6	94	89	4	764	31	12	30	26	1.92
87665--88199	145	3.7	144	91	4	821	31	12	30	26	1.92
87884--87959	24	3.2	24	62	23	61	28	13	32	25	1.93
88006--88080	23	3.2	23	62	23	57	29	10	32	28	1.90
88170--88260	46	2.0	46	84	0	119	32	6	32	27	1.83
88402--88583	37	4.9	37	90	0	274	25	18	29	26	1.98
90027--90133	23	5.2	23	60	25	67	22	22	29	25	1.99
89852--90244	40	9.8	40	92	0	615	23	21	28	26	1.99
94215--94290	24	3.2	24	64	23	61	30	11	32	25	1.91
94141--94674	145	3.7	144	87	5	758	31	12	29	26	1.92
94256--94329	23	3.2	23	62	24	55	27	13	32	27	1.94
94141--94674	47	11.1	47	86	6	701	31	12	29	26	1.92
94484--94558	23	3.2	23	62	23	57	29	10	32	28	1.90
94648--94738	46	2.0	46	84	0	119	32	9	31	25	1.89
94883--95027	37	3.9	37	93	0	236	24	18	30	26	1.98
99232--99360	46	2.8	46	91	0	204	28	27	22	21	1.99
99237--99379	46	3.1	45	84	6	137	27	27	22	22	1.99
105394--105499	48	2.2	48	93	0	176	33	27	5	33	1.80
108290--108353	31	2.1	31	87	0	92	23	23	15	37	1.93
108561--108644	26	3.4	25	88	6	100	26	22	22	28	1.99
108576--108644	26	2.7	26	93	4	115	26	23	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108692--108738	20	2.3	20	100	0	94	34	19	10	36	1.86
119100--119293	55	3.6	54	81	4	230	22	23	18	35	1.96
119275--119374	47	2.1	47	92	0	164	28	24	13	35	1.92
119525--119610	45	1.9	45	80	4	102	25	20	12	40	1.88
120146--120206	30	2.1	29	81	9	70	31	19	13	36	1.90

Tables:   1

The End!