Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3205
Parameters: 2 7 7 80 10 50 1000
Length:  44847

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1938--1981
6
7.3
6
100
0
88
68
0
0
31
0.90
5210--5245
3
12.0
3
100
0
72
33
66
0
0
0.92
14882--15012
41
3.1
41
69
20
124
27
23
23
25
2.00
14878--15058
86
2.1
87
91
1
301
27
23
23
25
2.00
15049--15244
97
2.0
95
93
1
329
31
17
21
29
1.96
15280--15667
97
4.0
96
94
2
690
29
18
22
29
1.97
15006--15475
231
2.0
231
97
0
886
28
19
22
29
1.98
15280--15667
192
2.0
192
97
0
740
29
18
22
29
1.97
15472--15898
231
1.8
231
97
0
809
29
18
22
29
1.98
15703--16090
97
4.0
96
92
2
663
30
18
21
29
1.97
15049--16742
423
4.0
423
97
0
3185
28
19
22
29
1.98
15703--16090
192
2.0
192
96
0
713
30
18
21
29
1.97
15895--16321
231
1.8
231
96
0
800
29
18
22
29
1.97
16126--16513
97
4.0
96
95
2
699
29
18
22
28
1.98
16126--16513
192
2.0
192
98
0
749
29
18
22
28
1.98
15470--16753
326
3.9
324
83
7
1358
28
19
22
29
1.98
16318--16752
231
1.9
229
95
0
789
28
19
22
28
1.98
16557--16742
95
2.0
95
97
0
354
27
20
23
28
1.99
16723--17324
44
13.9
44
66
4
209
28
20
24
26
1.99
16662--17391
130
5.6
130
90
1
1140
28
20
24
27
1.99
16647--17391
262
2.9
260
94
0
1269
28
20
24
26
1.99
17071--17385
43
7.3
43
66
7
163
28
19
25
26
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17834--17902
35
2.0
35
100
0
138
17
50
11
20
1.76
17851--17930
34
2.3
35
84
2
99
22
51
10
16
1.74
18436--18470
11
3.2
11
88
11
54
0
54
0
45
0.99
18943--18991
9
5.3
9
82
2
53
32
4
8
55
1.48
19247--19283
19
1.9
19
88
0
56
40
2
5
51
1.39
23322--23470
50
3.0
50
87
1
199
20
30
23
25
1.98
23412--23538
67
1.9
67
91
0
209
18
32
21
27
1.97
23479--23690
50
4.1
50
80
10
253
21
30
20
27
1.98
23509--23628
59
2.0
60
90
1
188
21
30
20
28
1.98
23479--23682
109
1.9
109
89
0
318
21
30
20
27
1.98
24027--24084
30
1.9
30
82
6
73
29
24
10
36
1.88
24497--24534
18
2.1
18
100
0
76
63
0
21
15
1.31
25103--25192
21
4.3
21
81
2
110
43
15
24
16
1.87
25065--25174
42
2.6
42
85
2
132
42
15
23
18
1.88
26280--26357
34
2.2
36
93
4
133
41
17
2
38
1.64
27946--27985
21
1.9
21
94
0
71
65
0
2
32
1.06
27939--27986
21
2.3
21
85
0
69
64
0
2
33
1.05
30174--30207
17
2.0
17
100
0
68
29
29
17
23
1.97

Tables:   1

The End!