Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1048
Parameters: 2 7 7 80 10 50 1000
Length:  154269

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5337--5369
17
1.9
17
93
0
57
45
48
0
6
1.27
8168--8201
17
2.0
17
94
0
59
44
50
0
5
1.26
15879--15909
16
1.9
16
100
0
62
45
12
16
25
1.83
21883--21937
5
10.8
5
82
2
56
52
3
7
36
1.47
22605--22663
31
1.9
31
85
0
82
50
8
15
25
1.71
23479--23537
30
1.9
31
83
16
79
59
3
1
35
1.24
38749--38784
17
2.1
17
100
0
72
38
0
5
55
1.23
44114--44214
51
2.0
51
98
0
193
24
11
20
42
1.86
47876--47934
31
1.9
31
86
3
84
42
11
15
30
1.83
50228--50275
25
1.9
25
82
0
60
25
4
37
33
1.75
56991--57067
40
1.9
41
86
7
113
45
7
1
45
1.40
63116--63155
18
2.2
19
86
4
55
82
0
17
0
0.67
63864--63896
16
2.1
16
100
0
66
15
18
6
60
1.54
69181--69292
57
2.0
57
90
0
179
37
27
12
22
1.90
81173--81315
73
1.9
74
85
1
198
47
10
16
25
1.78
109415--109495
9
8.9
9
88
1
99
40
28
9
20
1.85
109415--109490
27
2.8
27
91
0
125
40
27
9
22
1.84
114722--114756
15
2.3
15
90
0
52
31
11
0
57
1.34
120777--120823
15
3.1
16
75
9
53
25
6
2
65
1.27
124925--124976
25
2.0
26
89
10
81
40
0
0
59
0.97
124931--124984
19
2.9
19
78
8
58
37
0
0
62
0.95
124919--124969
6
8.3
6
77
12
50
45
0
0
54
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
124913--124978
31
2.2
30
86
7
91
39
0
0
60
0.97
126803--126896
47
2.0
47
85
8
129
31
7
28
31
1.85
130335--130385
26
2.0
26
84
7
68
25
5
7
60
1.47
130275--130690
135
2.9
139
87
10
565
37
9
5
47
1.58
130463--130531
26
2.6
26
79
9
68
28
4
5
60
1.39
130381--130728
158
2.2
159
96
0
653
37
7
5
49
1.53
130511--130566
24
2.3
23
79
11
60
37
0
5
57
1.22
130674--130725
24
2.2
24
86
6
70
36
0
5
57
1.23
131415--131479
31
2.1
31
97
0
121
26
7
13
52
1.67
138907--139096
94
2.0
94
94
0
335
21
28
18
31
1.97
143477--143642
47
3.6
47
92
2
264
30
5
28
35
1.80
144105--144137
16
2.1
16
100
0
66
48
6
39
6
1.53
144669--144739
31
2.3
30
85
9
90
18
18
30
32
1.95

Tables:   1

The End!