genome.fa.s1050.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2556
Parameters: 2 7 7 80 10 50 1000
Length:  143045

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3276--3319	22	2.0	22	82	8	54	38	36	9	15	1.80
7111--7141	4	7.8	4	100	0	62	22	0	0	77	0.77
8423--8460	17	2.2	18	85	4	51	63	2	23	10	1.39
8442--8496	12	4.6	12	73	15	51	63	0	23	12	1.29
15756--15810	15	3.8	14	80	7	65	74	1	21	1	1.01
22378--22432	15	3.8	14	80	7	65	74	1	21	1	1.01
27976--28055	32	2.5	32	74	8	90	37	23	21	17	1.94
28224--28353	24	5.4	24	89	0	134	46	23	7	23	1.78
28262--28356	24	4.0	24	92	0	145	44	22	7	26	1.79
30957--31009	23	2.4	22	76	20	56	9	18	1	69	1.25
41611--41691	12	6.8	12	69	17	53	12	23	1	62	1.36
41626--41681	18	3.0	20	68	26	59	10	26	0	62	1.28
44645--44692	13	3.5	13	78	16	53	77	0	20	2	0.88
60227--60335	6	17.7	6	70	11	69	72	2	17	7	1.20
60213--60333	12	10.0	12	68	23	67	71	2	17	9	1.24
60231--60335	18	5.6	18	70	15	79	72	2	17	7	1.20
60296--60333	13	2.8	13	82	17	51	73	0	18	7	1.06
60339--60370	12	2.7	12	95	0	55	59	0	21	18	1.38
63721--63765	13	3.6	13	88	5	67	22	8	0	68	1.16
70604--70656	20	2.7	20	70	2	54	32	18	28	20	1.97
72203--72278	27	2.8	27	80	11	68	9	22	1	67	1.27
72241--72360	12	10.0	12	69	19	63	8	17	3	70	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72197--72262	13	4.7	14	74	10	55	9	22	1	66	1.28
72204--72277	14	5.3	14	73	15	55	9	20	1	68	1.24
72239--72346	6	17.7	6	69	9	67	6	17	3	72	1.21
75364--75416	23	2.4	22	76	20	56	9	18	1	69	1.25
84205--84268	30	2.1	30	85	0	83	20	18	20	40	1.91
85555--85601	20	2.3	20	85	0	67	29	36	12	21	1.91
87110--87175	22	3.1	21	85	12	82	78	3	13	4	1.02
87131--87169	10	3.8	10	89	3	60	84	2	10	2	0.81
89995--90041	20	2.3	20	88	0	76	31	36	10	21	1.88
93190--93303	37	3.0	37	88	5	183	28	3	21	46	1.68
93186--93311	39	3.3	39	86	5	186	26	3	21	48	1.65
93273--93334	31	1.9	33	87	6	92	30	3	20	45	1.67
98576--98601	13	2.0	13	100	0	52	46	7	0	46	1.31
98991--99029	20	1.9	21	89	5	62	35	12	28	23	1.91
100698--100760	21	2.9	22	85	2	83	31	3	31	33	1.74
105548--105610	21	3.0	21	88	2	90	30	3	33	33	1.74
107322--107368	20	2.3	20	85	0	67	21	12	36	29	1.91
108877--108982	48	2.2	48	85	9	137	14	24	1	59	1.45
111608--111654	20	2.3	20	85	0	67	21	12	36	29	1.91
112024--112256	45	5.2	45	95	0	403	25	20	15	38	1.92
118429--118660	45	5.2	45	95	1	403	25	20	15	37	1.92
118429--118660	89	2.6	90	95	0	403	25	20	15	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120446--120677	45	5.2	45	95	0	403	25	19	15	38	1.92
122305--122492	45	4.2	45	95	0	322	25	20	15	38	1.92
123186--123239	18	3.2	17	73	21	51	12	25	1	59	1.44
123208--123259	18	2.9	18	80	8	61	15	19	5	59	1.56
123264--123355	6	14.8	6	73	4	76	5	19	2	72	1.14
124307--124358	11	4.6	11	85	9	61	9	3	1	84	0.82
124321--124358	10	3.7	10	89	6	58	10	0	2	86	0.66
125886--125924	20	1.9	21	89	5	62	35	12	28	23	1.91
126136--126176	16	2.5	17	84	11	59	4	19	0	75	0.98
129254--129290	14	2.6	14	95	0	65	43	0	2	54	1.14
133123--133186	22	2.9	22	78	0	83	26	31	6	35	1.81
137635--137682	23	2.1	23	96	0	87	68	8	2	20	1.26
137635--137679	11	4.0	11	94	5	81	71	8	2	17	1.23
137719--137758	15	2.7	15	100	0	80	65	5	12	17	1.44

Tables:   1

The End!