genome.fa.s1051.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold411
Parameters: 2 7 7 80 10 50 1000
Length:  134893

Tables:   1   

This is table  1  of  1  ( 96 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
451--490	14	2.7	15	88	7	55	70	2	2	25	1.13
2811--2851	14	2.7	15	85	7	57	73	2	2	21	1.07
9111--9150	14	2.7	15	88	7	55	70	2	2	25	1.13
11482--11522	14	2.7	15	85	7	57	73	2	2	21	1.07
19555--19618	27	2.3	28	82	10	69	73	3	9	14	1.20
19592--19621	15	2.0	15	93	0	51	66	3	10	20	1.35
25563--25603	17	2.4	18	80	8	50	14	24	4	56	1.58
25534--25587	24	2.2	25	78	15	60	11	22	3	62	1.43
27839--27870	1	32.0	1	93	0	55	0	3	0	96	0.20
32178--32231	24	2.2	25	78	15	60	11	22	3	62	1.43
34480--34508	14	2.1	14	100	0	58	13	6	6	72	1.26
34485--34528	20	2.1	21	91	4	72	9	4	4	81	0.96
34521--34552	12	2.7	12	95	0	55	15	6	0	78	0.95
34507--34553	13	3.7	13	88	8	62	14	6	2	76	1.08
38879--38919	17	2.4	18	80	8	50	14	24	4	56	1.58
38850--38903	24	2.2	25	78	15	60	11	22	3	62	1.43
41156--41195	18	2.2	18	90	0	62	7	5	5	82	0.94
41151--41179	14	2.1	14	100	0	58	13	6	6	72	1.26
43400--43438	15	2.4	15	87	12	51	10	20	2	66	1.33
44288--44351	27	2.3	30	84	15	84	12	7	3	76	1.11
44288--44351	29	2.3	29	84	15	82	12	7	3	76	1.11
44397--44447	11	4.7	11	88	9	70	13	1	5	78	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44689--44734	20	2.3	20	84	0	56	23	19	17	39	1.92
44681--44754	30	2.5	30	84	8	80	22	20	18	37	1.94
53168--53275	6	17.7	6	68	6	65	70	2	19	7	1.24
53155--53275	57	2.1	55	82	11	138	69	2	19	8	1.26
53154--53230	18	4.5	17	73	14	68	68	3	18	9	1.31
53236--53273	13	2.8	13	82	17	51	73	0	18	7	1.06
53237--53287	21	2.4	21	74	6	50	74	1	17	5	1.11
53189--53293	27	3.8	27	71	9	77	68	2	20	8	1.29
53290--53352	33	1.9	33	84	12	85	53	6	26	12	1.62
55128--55181	20	2.7	20	82	0	63	24	20	18	37	1.94
55128--55201	30	2.5	30	86	8	98	21	20	18	39	1.93
55128--55192	20	3.2	20	71	16	53	23	21	16	38	1.93
58327--58373	20	2.3	20	92	0	76	31	17	29	21	1.96
69698--69744	23	2.1	23	84	7	62	51	12	4	31	1.59
75065--75122	15	3.7	15	90	4	89	22	12	5	60	1.51
75160--75206	12	4.2	12	84	15	64	21	0	6	72	1.07
75163--75203	21	2.0	21	95	0	73	14	0	4	80	0.87
75163--75206	11	4.0	11	82	11	63	18	0	6	75	1.02
76195--76241	23	2.1	23	84	7	62	51	12	4	31	1.59
81315--81352	10	3.8	10	83	13	51	26	15	28	28	1.96
92765--92804	16	2.6	15	80	4	53	47	0	15	37	1.45
94771--94864	46	2.0	46	91	4	154	35	21	18	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97554--97593	18	2.2	18	86	4	53	12	27	0	60	1.33
98647--98690	14	3.4	13	87	9	63	20	9	0	70	1.14
98647--98690	13	3.4	14	87	12	67	20	9	0	70	1.14
98733--98780	12	3.9	12	86	5	60	14	4	10	70	1.29
98732--98777	13	3.7	12	88	8	65	13	2	8	76	1.11
101800--101863	22	2.9	22	88	0	92	29	32	4	32	1.78
102843--102881	20	1.9	21	89	5	62	23	28	12	35	1.91
103271--103296	13	2.0	13	100	0	52	46	0	7	46	1.31
104409--104456	10	4.8	10	85	7	62	83	0	4	12	0.79
104408--104453	19	2.4	18	86	10	65	82	0	4	13	0.81
105174--105227	20	2.7	20	82	0	63	24	20	18	37	1.94
105174--105247	30	2.5	30	86	8	98	21	20	18	39	1.93
105174--105238	20	3.2	20	71	16	53	23	21	16	38	1.93
106820--106848	11	2.6	11	100	0	58	79	6	0	13	0.93
106821--106858	10	3.7	10	89	10	51	76	7	2	13	1.11
106820--106872	11	4.8	12	82	15	53	73	7	5	13	1.23
107912--108030	12	9.6	12	72	16	66	72	4	17	5	1.21
107916--108018	18	5.6	18	72	7	73	71	3	17	6	1.23
107912--108018	6	17.7	6	68	8	65	71	3	17	6	1.22
107979--108016	13	2.8	13	82	17	51	73	0	18	7	1.06
107980--108030	21	2.4	21	74	6	50	74	1	17	5	1.11
108033--108095	33	1.9	33	84	12	85	53	6	26	12	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109869--109922	20	2.7	20	82	0	63	24	20	18	37	1.94
109869--109942	30	2.5	30	86	8	98	21	20	18	39	1.93
109869--109933	20	3.2	20	71	16	53	23	21	16	38	1.93
111742--111839	6	16.0	6	69	12	65	72	2	20	5	1.14
111762--111795	17	2.0	17	94	0	59	79	5	14	0	0.91
111801--111838	13	2.8	13	82	17	51	73	0	18	7	1.06
111857--111896	18	2.3	18	82	4	55	65	5	20	10	1.42
111857--111906	17	2.9	17	77	8	57	62	4	24	10	1.44
111843--111918	36	2.1	35	81	13	93	59	3	22	14	1.52
111858--111923	17	3.8	16	77	16	51	59	4	24	12	1.52
113156--113194	20	1.9	21	89	5	62	23	28	12	35	1.91
113583--113608	13	2.0	13	100	0	52	46	0	7	46	1.31
115642--115671	10	2.9	10	95	5	51	80	6	3	10	1.01
115751--115831	10	7.4	10	74	16	63	74	2	13	9	1.17
116841--116959	12	9.6	12	72	16	66	72	4	17	5	1.21
116845--116947	18	5.6	18	72	7	73	71	3	17	6	1.23
116841--116947	6	17.7	6	68	8	65	71	3	17	6	1.22
116908--116945	13	2.8	13	82	17	51	73	0	18	7	1.06
116909--116959	21	2.4	21	74	6	50	74	1	17	5	1.11
116962--117024	33	1.9	33	84	12	85	53	6	26	12	1.62
118800--118853	20	2.7	20	82	0	63	24	20	18	37	1.94
118800--118873	30	2.5	30	86	8	98	21	20	18	39	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118800--118864	20	3.2	20	71	16	53	23	21	16	38	1.93
120874--120899	13	2.0	13	100	0	52	46	0	7	46	1.31
122948--122972	12	2.1	12	100	0	50	76	8	0	16	1.02
124040--124147	6	17.7	6	69	10	67	72	3	17	6	1.21
124108--124145	13	2.8	13	82	17	51	73	0	18	7	1.06
124151--124182	12	2.7	12	95	0	55	59	0	21	18	1.38
132385--132431	23	2.1	23	84	7	62	51	12	4	31	1.59
134163--134231	34	2.0	34	100	0	138	28	23	13	34	1.92

Tables:   1

The End!