Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3445
Parameters: 2 7 7 80 10 50 1000
Length:  125076

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10925--10955
13
2.3
14
94
5
55
77
0
0
22
0.77
12300--12351
23
2.3
22
75
21
54
9
23
1
65
1.32
14183--14243
10
6.1
10
74
12
54
32
13
24
29
1.93
14184--14244
20
3.0
20
83
9
79
32
13
26
27
1.93
16309--16343
18
1.9
18
88
11
54
22
20
0
57
1.41
16331--16435
6
17.2
6
66
9
52
7
17
3
71
1.25
16382--16435
6
9.2
6
75
4
56
3
14
5
75
1.12
17502--17536
11
3.3
11
92
4
54
14
2
8
74
1.17
17611--17641
10
3.0
10
95
4
53
9
3
9
77
1.10
18893--18953
10
6.1
10
74
12
54
32
13
24
29
1.93
18894--18954
20
3.0
20
83
9
79
32
13
26
27
1.93
22498--22527
15
1.9
15
93
6
51
73
6
0
20
1.05
30518--30552
4
9.0
4
93
6
63
77
0
0
22
0.78
31904--31956
23
2.4
22
76
20
56
9
18
1
69
1.25
41591--41619
12
2.3
13
94
5
51
65
0
20
13
1.26
41600--41652
23
2.4
22
76
20
56
69
1
18
9
1.25
43005--43030
4
6.5
4
100
0
52
23
0
0
76
0.78
51874--51967
46
2.0
46
91
4
154
24
17
22
36
1.95
54198--54239
22
2.1
19
86
13
57
52
0
2
45
1.13
55329--55382
20
2.7
20
82
0
63
24
20
18
37
1.94
55329--55402
30
2.5
30
86
8
98
21
20
18
39
1.93
55329--55393
20
3.2
20
71
16
53
23
21
16
38
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57002--57037
10
3.3
11
92
7
56
75
8
2
13
1.15
57010--57060
10
5.0
10
81
11
50
76
7
5
9
1.15
58106--58243
6
22.7
6
66
7
55
68
2
19
9
1.27
58092--58243
18
8.4
18
72
14
73
67
1
19
10
1.30
58174--58261
30
3.1
27
80
12
97
69
1
18
11
1.24
58084--58261
57
3.2
52
75
13
162
67
2
19
10
1.31
58258--58320
33
1.9
33
84
12
85
53
6
26
12
1.62
60091--60144
20
2.7
20
82
0
63
24
20
18
37
1.94
60091--60164
30
2.5
30
86
8
98
21
20
18
39
1.93
60091--60155
20
3.2
20
71
16
53
23
21
16
38
1.93
70505--70551
20
2.3
20
85
0
67
21
12
36
29
1.91
72221--72344
48
2.6
48
84
7
146
13
26
0
58
1.41
72302--72337
18
2.1
17
90
10
56
16
25
0
58
1.38
74923--74969
20
2.3
20
85
0
67
21
12
36
29
1.91
86693--86784
29
3.2
29
65
17
82
44
14
7
33
1.73
86684--86832
58
2.6
58
97
0
280
43
13
8
34
1.75
89368--89402
17
2.1
16
89
5
52
8
8
2
80
1.01
90945--90999
20
2.8
20
94
0
92
27
16
29
27
1.97
94725--94768
22
2.0
22
90
0
70
31
4
36
27
1.77
97020--97066
20
2.3
20
81
0
58
23
12
34
29
1.92
99606--99699
46
2.0
46
91
4
154
23
18
23
35
1.96
100156--100195
14
2.7
15
88
7
55
70
2
2
25
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102537--102577
14
2.7
15
85
7
57
73
2
2
21
1.07

Tables:   1

The End!