Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1212
Parameters: 2 7 7 80 10 50 1000
Length:  115892

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3881--3912
15
2.0
17
88
11
50
68
3
18
9
1.30
8435--8487
14
3.7
14
92
7
81
18
13
5
62
1.50
8528--8576
10
5.0
10
77
22
59
16
0
10
73
1.09
8527--8573
11
4.6
11
80
20
66
12
0
8
78
0.95
8529--8564
18
2.0
18
100
0
72
11
0
11
77
0.99
8531--8570
18
2.2
18
90
0
62
15
0
10
75
1.05
10630--10680
27
1.9
26
84
4
66
27
3
13
54
1.56
12477--12516
17
2.4
16
95
4
71
17
10
5
67
1.37
12558--12601
12
3.7
12
93
0
79
11
2
6
79
1.01
18863--19085
40
5.6
39
83
5
223
24
20
28
26
1.99
18938--19120
79
2.3
80
81
1
217
25
20
28
25
1.99
24218--24261
22
2.0
22
95
0
79
34
4
36
25
1.76
28309--28333
13
1.9
13
100
0
50
20
8
0
72
1.10
28648--28691
22
2.0
22
95
0
79
34
4
36
25
1.76
31194--31221
13
2.2
13
100
0
56
35
17
39
7
1.78
32408--32440
13
2.4
14
90
10
50
18
6
0
75
1.00
32408--32463
12
4.6
12
82
15
53
14
7
3
75
1.16
32424--32462
10
3.7
10
83
12
51
10
7
5
76
1.13
45472--45529
10
5.7
10
76
11
64
29
27
13
29
1.94
45472--45532
20
3.0
20
83
9
79
27
26
13
32
1.93
46860--46896
12
3.1
12
92
0
56
75
5
5
13
1.15
47831--47865
18
1.9
18
88
11
54
57
0
20
22
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49936--49993
10
5.7
10
76
11
64
29
27
13
29
1.94
49936--49996
20
3.0
20
83
9
79
27
26
13
32
1.93
52117--52163
23
2.1
23
84
7
62
51
12
4
31
1.59
59187--59246
13
4.8
13
87
8
88
15
1
8
75
1.12
59191--59233
11
3.7
11
88
11
68
13
0
6
79
0.93
59187--59233
24
2.0
24
100
0
94
17
0
6
76
0.98
59190--59250
12
5.0
12
86
7
52
13
3
11
72
1.24
60233--60279
23
2.1
23
84
7
62
51
12
4
31
1.59
63232--63263
11
2.9
11
95
0
55
18
9
3
68
1.30
70883--70936
17
3.2
17
81
0
63
75
3
12
7
1.14
77181--77232
23
2.3
22
75
21
54
9
23
1
65
1.32
80582--80628
23
2.1
23
84
7
62
51
12
4
31
1.59
82204--82264
10
6.1
10
74
12
54
32
11
24
31
1.91
82205--82265
20
3.0
20
81
9
70
32
11
26
29
1.91
84329--84363
18
1.9
18
88
11
54
22
20
0
57
1.41
84401--84467
18
3.6
18
80
6
80
7
16
4
71
1.25
84402--84445
6
7.3
6
78
0
52
4
15
4
75
1.14
85638--85666
10
2.7
11
94
5
51
6
3
6
82
0.93
86922--86982
10
6.1
10
74
12
54
32
13
24
29
1.93
86923--86983
20
3.0
20
83
9
79
32
13
26
27
1.93
90204--90254
26
2.0
26
88
0
75
29
3
9
56
1.49
93731--93773
15
2.7
16
92
7
70
18
11
4
65
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93814--93869
11
5.0
11
82
4
67
16
0
10
73
1.10
94858--94904
23
2.1
23
84
7
62
51
12
4
31
1.59
105005--105058
25
2.1
25
86
6
72
46
12
18
22
1.83
110779--110810
12
2.7
12
100
0
64
81
6
0
12
0.87
111843--111948
48
2.2
47
83
12
128
60
1
25
12
1.42
112779--112806
4
7.0
4
100
0
56
75
0
0
25
0.81
114159--114211
23
2.4
22
76
20
56
9
18
1
69
1.25
115699--115767
33
2.1
34
97
2
131
47
33
8
10
1.68

Tables:   1

The End!