Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold867
Parameters: 2 7 7 80 10 50 1000
Length:  107622

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
996--1060
20
3.3
19
73
16
51
38
16
21
23
1.93
2837--2899
33
1.9
33
84
12
85
12
25
6
55
1.60
2896--2950
27
2.1
26
86
10
76
9
18
1
70
1.22
2896--2950
14
4.1
14
79
11
62
9
18
1
70
1.22
2957--3038
16
5.1
16
77
11
78
8
19
3
68
1.31
4085--4117
11
3.1
11
86
8
50
15
9
0
75
1.03
4043--4103
28
2.1
28
82
8
70
3
16
4
75
1.11
5541--5601
16
3.7
16
95
4
104
63
4
11
19
1.45
5543--5601
18
3.4
18
90
4
86
66
5
10
18
1.40
5760--5794
12
3.0
12
91
4
54
68
14
5
11
1.37
18246--18478
45
5.2
45
94
0
394
26
20
15
38
1.92
19957--20018
10
5.9
10
74
10
52
33
32
3
30
1.74
19957--20019
21
3.0
21
88
2
90
33
33
3
30
1.74
20345--20369
13
1.9
13
100
0
50
76
0
8
16
1.02
21139--21172
15
2.3
15
89
0
50
35
29
32
2
1.73
21288--21334
20
2.3
20
88
0
76
27
36
14
21
1.93
22809--22848
14
2.7
15
84
7
55
77
2
7
12
1.07
22839--22899
22
2.7
23
85
10
81
77
1
16
4
1.03
22855--22893
11
3.7
10
87
12
60
84
0
12
2
0.72
22855--22892
12
3.5
11
82
10
51
86
0
10
2
0.66
22825--22899
11
6.3
12
70
22
52
76
1
14
8
1.08
23887--23992
48
2.2
47
85
9
135
59
1
24
14
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25635--25681
20
2.3
20
85
0
67
29
36
12
21
1.91
30275--30337
21
3.0
21
83
2
72
31
33
4
30
1.78
32687--32749
21
3.0
21
83
2
72
31
33
4
30
1.78
34476--34610
50
2.7
50
84
2
191
20
28
23
27
1.99
41337--41396
18
3.2
18
78
7
66
71
3
18
6
1.22
45120--45185
33
2.0
34
85
8
91
31
16
24
27
1.96
49520--49573
20
2.7
20
82
0
63
24
20
18
37
1.94
49520--49593
30
2.5
30
86
8
98
21
20
18
39
1.93
49520--49584
20
3.2
20
71
16
53
23
21
16
38
1.93
54367--54417
22
2.4
22
75
21
54
9
17
1
70
1.24
55715--55748
9
3.7
9
92
4
50
11
5
8
73
1.24
57783--57817
13
2.7
13
90
0
52
45
0
11
42
1.40
58035--58097
23
2.7
24
87
7
94
23
11
19
46
1.82
61437--61503
21
3.1
21
82
4
71
34
32
2
29
1.73
61802--61854
27
2.0
26
88
3
79
75
1
7
15
1.11
61802--61850
13
3.8
13
94
0
80
79
2
6
12
0.99
64069--64124
17
3.2
17
74
18
51
75
3
12
8
1.17
64077--64119
19
2.3
19
84
4
52
79
2
9
9
1.03
68365--68431
21
3.1
21
82
4
71
34
32
2
29
1.73
69480--69540
14
4.6
13
77
15
63
78
3
6
11
1.05
69480--69530
13
3.5
15
82
15
54
76
3
5
13
1.11
69509--69554
23
2.0
24
91
4
76
78
4
6
10
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69480--69561
15
6.0
15
76
18
56
73
4
7
14
1.22
72894--72931
11
3.4
11
92
3
58
78
2
15
2
0.97
85700--85746
23
2.1
23
84
7
62
51
12
4
31
1.59
91067--91122
15
3.7
15
97
2
103
19
12
5
62
1.49
91160--91209
12
4.2
12
97
0
91
22
0
8
70
1.13
93008--93072
20
3.3
19
73
16
51
38
16
21
23
1.93
93246--93292
20
2.3
20
85
0
67
29
36
12
21
1.91
94823--94869
23
2.1
22
88
4
67
82
2
10
4
0.88
94823--94860
10
3.7
10
89
3
58
86
2
7
2
0.74
97681--97727
20
2.3
20
85
0
67
29
36
12
21
1.91
99237--99303
22
3.1
21
85
12
84
79
1
13
5
0.99
99259--99297
10
3.8
10
89
3
60
84
0
10
5
0.76
99259--99303
10
4.3
10
83
8
54
82
0
11
6
0.84
100275--100302
4
7.0
4
100
0
56
25
0
0
75
0.81
104052--104080
12
2.3
13
94
5
51
24
0
0
75
0.80

Tables:   1

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