genome.fa.s1056.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold506_ERROPOS18720927
Parameters: 2 7 7 80 10 50 1000
Length:  98979

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126--202	26	3.1	26	69	14	81	32	20	23	23	1.98
5272--5329	30	1.9	30	89	0	89	41	3	24	31	1.71
5540--5571	13	2.5	13	94	0	55	31	0	12	56	1.37
5666--5907	50	4.7	50	84	4	279	26	24	28	19	1.99
5666--5915	100	2.4	103	88	6	373	26	24	28	20	1.99
10005--10088	9	9.4	9	90	2	116	44	25	7	23	1.79
11171--11208	20	1.9	20	88	0	58	31	0	5	63	1.17
11304--11349	21	2.2	21	100	0	92	60	0	4	34	1.16
11529--11567	20	2.0	20	84	0	51	69	7	0	23	1.14
17886--17943	30	1.9	30	89	0	89	41	3	24	31	1.71
18155--18186	13	2.5	13	94	0	55	31	0	12	56	1.37
18281--18522	50	4.7	50	86	4	297	26	24	29	19	1.99
18281--18530	100	2.4	103	88	6	364	26	24	29	20	1.99
22624--22707	9	9.4	9	90	2	116	44	25	7	23	1.79
30715--30744	15	2.0	15	100	0	60	20	6	13	60	1.55
33189--33223	6	5.8	6	89	0	52	65	11	5	17	1.43
34201--34240	13	3.0	14	89	7	57	70	0	17	12	1.18
34201--34240	20	2.0	20	90	0	62	70	0	17	12	1.18
34201--34240	7	6.0	7	82	11	57	70	0	17	12	1.18
35594--35894	46	6.8	44	73	11	233	30	19	22	27	1.98
35468--35926	44	10.5	44	70	12	257	29	18	22	29	1.98
35649--35809	87	1.9	87	80	7	193	33	19	19	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35468--36028	218	2.6	219	86	2	777	31	17	22	29	1.96
35935--36131	99	2.0	97	83	6	245	35	16	18	29	1.93
36048--36424	129	2.9	128	85	3	488	31	21	20	26	1.98
36055--36364	44	7.2	44	69	11	174	32	21	19	27	1.97
38680--38878	108	1.8	109	84	5	260	28	16	18	36	1.93
45396--45432	16	2.2	17	90	4	58	70	0	0	29	0.88
47043--47079	7	5.1	7	93	6	65	13	43	0	43	1.44
47043--47079	15	2.6	14	95	4	65	13	43	0	43	1.44
61666--61716	24	2.2	24	85	3	68	31	7	9	50	1.64
65483--65731	50	4.8	50	85	4	284	20	29	24	26	1.99
65482--65731	100	2.4	104	88	6	357	20	29	24	26	1.99
65826--65857	13	2.5	13	94	0	55	56	12	0	31	1.37
66069--66126	30	1.9	30	89	0	89	31	24	3	41	1.71
76437--76611	54	3.5	49	79	9	169	20	31	21	26	1.98
76393--76570	96	1.9	96	84	7	245	17	30	23	27	1.97
76715--76746	13	2.5	13	94	0	55	56	12	0	31	1.37
76958--77014	28	2.0	28	89	0	87	35	24	3	36	1.73
77135--77171	1	37.0	1	100	0	74	0	0	0	100	0.00
80970--81098	56	2.3	54	85	6	186	26	15	24	34	1.95
82433--82728	40	7.5	40	88	2	420	25	27	22	24	2.00
90770--91067	40	7.5	40	91	1	447	24	27	23	24	2.00
97785--97927	33	4.3	33	67	10	94	31	19	25	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97954--98065	45	2.5	45	89	0	161	37	16	25	20	1.93
98047--98203	46	3.4	45	89	1	224	44	12	22	19	1.85
98047--98236	92	2.1	91	85	3	247	43	14	21	20	1.87

Tables:   1

The End!