Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold61_ERROPOS548942+
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91888
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Found at i:6089 original size:27 final size:27
Alignment explanation
Indices: 6059--6236 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
6049 ATATTGAGTC
* * * *
6059 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
6086 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
6113 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
6141 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
6168 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
6195 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
6222 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
6237 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:6198 original size:82 final size:81
Alignment explanation
Indices: 6080--6235 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
6070 TGCTATATAA
* *
6080 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
6145 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
6162 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
6226 CACTTAGTGC
65 CACTTAGTGC
6236 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:16538 original size:22 final size:22
Alignment explanation
Indices: 16484--16540 Score: 89
Period size: 21 Copynumber: 2.6 Consensus size: 22
16474 TAGTAGTTTC
*
16484 TTCAAAAAAAATTTCAAAAAAA
1 TTCAAAAAAAAATTCAAAAAAA
*
16506 ATC-AAAAAAAATTCAAAAAAA
1 TTCAAAAAAAAATTCAAAAAAA
16527 TTCAAAAAAAAATT
1 TTCAAAAAAAAATT
16541 TGGTTTCCAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
21 19 0.61
22 12 0.39
ACGTcount: A:0.70, C:0.09, G:0.00, T:0.21
Consensus pattern (22 bp):
TTCAAAAAAAAATTCAAAAAAA
Found at i:16540 original size:12 final size:11
Alignment explanation
Indices: 16484--16537 Score: 85
Period size: 10 Copynumber: 5.0 Consensus size: 11
16474 TAGTAGTTTC
16484 TTCAAAAAAAA
1 TTCAAAAAAAA
16495 TTTCAAAAAAAA
1 -TTCAAAAAAAA
16507 -TCAAAAAAAA
1 TTCAAAAAAAA
16517 TTC-AAAAAAA
1 TTCAAAAAAAA
16527 TTCAAAAAAAA
1 TTCAAAAAAAA
16538 ATTTGGTTTC
Statistics
Matches: 40, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
10 20 0.50
11 9 0.22
12 11 0.28
ACGTcount: A:0.72, C:0.09, G:0.00, T:0.19
Consensus pattern (11 bp):
TTCAAAAAAAA
Found at i:16605 original size:15 final size:16
Alignment explanation
Indices: 16587--16628 Score: 77
Period size: 15 Copynumber: 2.7 Consensus size: 16
16577 TTGAAAAAAA
16587 CGTGAAAAAAAAA-TT
1 CGTGAAAAAAAAATTT
16602 CGTGAAAAAAAAATTT
1 CGTGAAAAAAAAATTT
16618 CGTGAAAAAAA
1 CGTGAAAAAAA
16629 GAAGAAGCTA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 13 0.50
16 13 0.50
ACGTcount: A:0.60, C:0.07, G:0.14, T:0.19
Consensus pattern (16 bp):
CGTGAAAAAAAAATTT
Found at i:16610 original size:16 final size:16
Alignment explanation
Indices: 16587--16628 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
16577 TTGAAAAAAA
16587 CGTG-AAAAAAAAATT
1 CGTGAAAAAAAAAATT
*
16602 CGTGAAAAAAAAATTT
1 CGTGAAAAAAAAAATT
16618 CGTGAAAAAAA
1 CGTGAAAAAAA
16629 GAAGAAGCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
15 4 0.16
16 21 0.84
ACGTcount: A:0.60, C:0.07, G:0.14, T:0.19
Consensus pattern (16 bp):
CGTGAAAAAAAAAATT
Found at i:23290 original size:7 final size:7
Alignment explanation
Indices: 23278--23307 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
23268 ATTTGTAAAG
23278 GACTTTT
1 GACTTTT
23285 GACTTTT
1 GACTTTT
23292 GACTTTT
1 GACTTTT
23299 GACTTTT
1 GACTTTT
23306 GA
1 GA
23308 TCATTTGAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.17, C:0.13, G:0.17, T:0.53
Consensus pattern (7 bp):
GACTTTT
Found at i:24989 original size:34 final size:33
Alignment explanation
Indices: 24922--24990 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 33
24912 CATGCATTAA
* *
24922 AGATGTTCTACATGCATGGAACGGCAATTAATG
1 AGATGTTCCACATGCATGGAACGACAATTAATG
*
24955 AGATGTTCCACATGCAATGG-ACGACATTTAAATG
1 AGATGTTCCACATGC-ATGGAACGACAATT-AATG
24989 AG
1 AG
24991 GGAGAGTGAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
33 21 0.68
34 10 0.32
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.26
Consensus pattern (33 bp):
AGATGTTCCACATGCATGGAACGACAATTAATG
Found at i:26123 original size:11 final size:12
Alignment explanation
Indices: 26107--26140 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
26097 AGGAAATTTG
26107 AAAAAAAATTCA
1 AAAAAAAATTCA
26119 AAAAAAAATTCA
1 AAAAAAAATTCA
26131 AAAAAAAATT
1 AAAAAAAATT
26141 GAAGTATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.76, C:0.06, G:0.00, T:0.18
Consensus pattern (12 bp):
AAAAAAAATTCA
Found at i:26140 original size:36 final size:35
Alignment explanation
Indices: 26069--26140 Score: 81
Period size: 36 Copynumber: 2.0 Consensus size: 35
26059 CATATTGTAA
* * **
26069 TTGAAAAAAAATCAAAAAAAAAGAGAAGAGGAAAT
1 TTGAAAAAAAATCAAAAAAAAAGACAAAAAAAAAT
**
26104 TTGAAAAAAAATTCAAAAAAAAATTCAAAAAAAAAT
1 TTGAAAAAAAA-TCAAAAAAAAAGACAAAAAAAAAT
26140 T
1 T
26141 GAAGTATAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
35 11 0.37
36 19 0.63
ACGTcount: A:0.69, C:0.04, G:0.10, T:0.17
Consensus pattern (35 bp):
TTGAAAAAAAATCAAAAAAAAAGACAAAAAAAAAT
Found at i:26143 original size:35 final size:35
Alignment explanation
Indices: 26067--26143 Score: 84
Period size: 35 Copynumber: 2.2 Consensus size: 35
26057 AGCATATTGT
* **
26067 AATTGAAAAAAAATCAAAAAAAAAGAGAAGAGGAA
1 AATTGAAAAAAAATCAAAAAAAAAGACAAGAAAAA
* **
26102 ATTTGAAAAAAAATTCAAAAAAAAATTCAA-AAAAA
1 AATTGAAAAAAAA-TCAAAAAAAAAGACAAGAAAAA
26137 AATTGAA
1 AATTGAA
26144 GTATAAAAAA
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
35 21 0.62
36 13 0.38
ACGTcount: A:0.70, C:0.04, G:0.10, T:0.16
Consensus pattern (35 bp):
AATTGAAAAAAAATCAAAAAAAAAGACAAGAAAAA
Found at i:29337 original size:34 final size:33
Alignment explanation
Indices: 29273--29338 Score: 80
Period size: 33 Copynumber: 2.0 Consensus size: 33
29263 TTAAAGATGT
* *
29273 TGTTCTACATGCATGGAACGGCAATTAATGAGA
1 TGTTCCACATGCATGGAACGACAATTAATGAGA
*
29306 TGTTCCACATGCAATGG-ACGACATTTAAATGAG
1 TGTTCCACATGC-ATGGAACGACAATT-AATGAG
29339 GGAGAGTGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
33 18 0.64
34 10 0.36
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (33 bp):
TGTTCCACATGCATGGAACGACAATTAATGAGA
Found at i:35977 original size:40 final size:40
Alignment explanation
Indices: 35785--35970 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
35775 TTGAATGATG
* * * * *
35785 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* **
35825 TTCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
35865 TTCAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
35905 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
35946 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
35971 AACGAGTAGC
Statistics
Matches: 129, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 118 0.91
41 10 0.08
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:35977 original size:80 final size:79
Alignment explanation
Indices: 35838--35993 Score: 208
Period size: 80 Copynumber: 2.0 Consensus size: 79
35828 GGACTAAGAT
* * **
35838 CCGAAGGCATTTGTGCGAGTTACTAAATTCAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCAGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCT
35902 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAGTC
* *
35918 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCT
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCAGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCT
*
35982 ATATCCGGTTAA
65 AAATCCGGTTAA
35994 ATTTCGAAGG
Statistics
Matches: 67, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
79 8 0.12
80 57 0.85
81 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCAGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAGTC
Found at i:44478 original size:40 final size:40
Alignment explanation
Indices: 44395--44580 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
44385 TTGAATGATG
* * * *
44395 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
44435 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
44475 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
44515 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
44556 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
44581 AACGAGTAGC
Statistics
Matches: 133, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 1 0.01
40 122 0.92
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:44587 original size:80 final size:79
Alignment explanation
Indices: 44448--44613 Score: 228
Period size: 80 Copynumber: 2.1 Consensus size: 79
44438 GGACTAAGAT
* **
44448 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCT
*
44512 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAATC
*
44528 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCT
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCT
* *
44592 ATATCCGGTTAAATT
65 AAATCCGGTTAAATC
44607 CCGAAGG
1 CCGAAGG
44614 TACGTGATTT
Statistics
Matches: 77, Mismatches: 7, Indels: 5
0.87 0.08 0.06
Matches are distributed among these distances:
79 16 0.21
80 59 0.77
81 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAATC
Found at i:56165 original size:9 final size:9
Alignment explanation
Indices: 56153--56191 Score: 60
Period size: 10 Copynumber: 4.1 Consensus size: 9
56143 GACTTTTCAC
56153 TTCTTTTTT
1 TTCTTTTTT
56162 TTCTTTTTTT
1 TTC-TTTTTT
56172 TTACTTTTTT
1 TT-CTTTTTT
56182 TTCTTTTTT
1 TTCTTTTTT
56191 T
1 T
56192 GCTCACTTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
9 11 0.39
10 16 0.57
11 1 0.04
ACGTcount: A:0.03, C:0.10, G:0.00, T:0.87
Consensus pattern (9 bp):
TTCTTTTTT
Found at i:58228 original size:11 final size:10
Alignment explanation
Indices: 58203--58263 Score: 54
Period size: 10 Copynumber: 6.1 Consensus size: 10
58193 ACCAATAAAA
58203 TAAA-TGAGC
1 TAAATTGAGC
*
58212 TGAATTGTAGC
1 TAAATTG-AGC
58223 TAAATTGAGC
1 TAAATTGAGC
**
58233 TCGATTGAGC
1 TAAATTGAGC
58243 TGAAA-TGAGC
1 T-AAATTGAGC
*
58253 TCAATTGAGC
1 TAAATTGAGC
58263 T
1 T
58264 GGTCGGAGTT
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
9 5 0.12
10 26 0.63
11 10 0.24
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.30
Consensus pattern (10 bp):
TAAATTGAGC
Found at i:58264 original size:20 final size:20
Alignment explanation
Indices: 58204--58264 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 20
58194 CCAATAAAAT
*
58204 AAATGAGCTGAATTGTAGCT-
1 AAATGAGCTCAATTG-AGCTG
*
58224 AAATTGAGCTCGATTGAGCTG
1 AAA-TGAGCTCAATTGAGCTG
58245 AAATGAGCTCAATTGAGCTG
1 AAATGAGCTCAATTGAGCTG
58265 GTCGGAGTTG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 23 0.64
21 13 0.36
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (20 bp):
AAATGAGCTCAATTGAGCTG
Found at i:60337 original size:18 final size:18
Alignment explanation
Indices: 60316--60350 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
60306 TTTTTCTTTT
60316 TCAATTT-TTTTCTCAATC
1 TCAATTTCTTTT-TCAATC
60334 TCAATTTCTTTTTCAAT
1 TCAATTTCTTTTTCAAT
60351 TTTCTTTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.23, C:0.20, G:0.00, T:0.57
Consensus pattern (18 bp):
TCAATTTCTTTTTCAATC
Found at i:60454 original size:6 final size:6
Alignment explanation
Indices: 60388--60441 Score: 56
Period size: 6 Copynumber: 9.2 Consensus size: 6
60378 ACTATTTTGA
* ** * *
60388 TTTCTT TTTCTT TTGCAA TTTCTT TTTCTT TTTCGT TTTCTT TTT-GT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT
60435 TTTCTT T
1 TTTCTT T
60442 CAATTTCTTT
Statistics
Matches: 37, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
5 4 0.11
6 33 0.89
ACGTcount: A:0.04, C:0.15, G:0.06, T:0.76
Consensus pattern (6 bp):
TTTCTT
Found at i:61501 original size:11 final size:11
Alignment explanation
Indices: 61487--61529 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
61477 TTTGCTCACT
61487 TTTTTTTTTTC
1 TTTTTTTTTTC
61498 TTTTTTTTTTC
1 TTTTTTTTTTC
** **
61509 GATTTTTTCAC
1 TTTTTTTTTTC
61520 TTTTTTTTTT
1 TTTTTTTTTT
61530 GAATTTTTTT
Statistics
Matches: 24, Mismatches: 8, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.05, C:0.09, G:0.02, T:0.84
Consensus pattern (11 bp):
TTTTTTTTTTC
Found at i:61514 original size:22 final size:22
Alignment explanation
Indices: 61489--61540 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
61479 TGCTCACTTT
61489 TTTTTTTTCTTTTTTTTTTCG-A
1 TTTTTTTTCTTTTTTTTTT-GAA
**
61511 TTTTTTCACTTTTTTTTTTGAA
1 TTTTTTTTCTTTTTTTTTTGAA
61533 TTTTTTTT
1 TTTTTTTT
61541 GAATTTCTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
21 1 0.04
22 24 0.96
ACGTcount: A:0.08, C:0.08, G:0.04, T:0.81
Consensus pattern (22 bp):
TTTTTTTTCTTTTTTTTTTGAA
Found at i:61536 original size:11 final size:11
Alignment explanation
Indices: 61522--61552 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
61512 TTTTTCACTT
61522 TTTTTTTTGAA
1 TTTTTTTTGAA
61533 TTTTTTTTGAA
1 TTTTTTTTGAA
61544 TTTCTTTTT
1 TTT-TTTTT
61553 TTTATCCAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.74
12 5 0.26
ACGTcount: A:0.13, C:0.03, G:0.06, T:0.77
Consensus pattern (11 bp):
TTTTTTTTGAA
Found at i:62899 original size:11 final size:10
Alignment explanation
Indices: 62874--62934 Score: 54
Period size: 10 Copynumber: 6.1 Consensus size: 10
62864 ACCAATAAAA
62874 TAAA-TGAGC
1 TAAATTGAGC
*
62883 TGAATTGTAGC
1 TAAATTG-AGC
62894 TAAATTGAGC
1 TAAATTGAGC
**
62904 TCGATTGAGC
1 TAAATTGAGC
62914 TGAAA-TGAGC
1 T-AAATTGAGC
*
62924 TCAATTGAGC
1 TAAATTGAGC
62934 T
1 T
62935 GGTCGGAGTT
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
9 5 0.12
10 26 0.63
11 10 0.24
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.30
Consensus pattern (10 bp):
TAAATTGAGC
Found at i:62935 original size:20 final size:20
Alignment explanation
Indices: 62875--62935 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 20
62865 CCAATAAAAT
*
62875 AAATGAGCTGAATTGTAGCT-
1 AAATGAGCTCAATTG-AGCTG
*
62895 AAATTGAGCTCGATTGAGCTG
1 AAA-TGAGCTCAATTGAGCTG
62916 AAATGAGCTCAATTGAGCTG
1 AAATGAGCTCAATTGAGCTG
62936 GTCGGAGTTG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 23 0.64
21 13 0.36
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (20 bp):
AAATGAGCTCAATTGAGCTG
Found at i:65019 original size:18 final size:18
Alignment explanation
Indices: 64998--65032 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
64988 TTTTTCTTTT
64998 TCAATTT-TTTTCTCAATC
1 TCAATTTCTTTT-TCAATC
65016 TCAATTTCTTTTTCAAT
1 TCAATTTCTTTTTCAAT
65033 TTTCTTTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.23, C:0.20, G:0.00, T:0.57
Consensus pattern (18 bp):
TCAATTTCTTTTTCAATC
Found at i:66166 original size:27 final size:27
Alignment explanation
Indices: 66136--66199 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
66126 GCAAGACTTT
*
66136 TCACTTTTTTTAACTTGATTTTTTTGC
1 TCACTTTTTTTAACTTCATTTTTTTGC
** *
66163 TCACTTTTTTTTTCTTCTTTTTTTTGC
1 TCACTTTTTTTAACTTCATTTTTTTGC
66190 TCGA-TTTTTT
1 TC-ACTTTTTT
66200 CACTTTTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.09, C:0.16, G:0.06, T:0.69
Consensus pattern (27 bp):
TCACTTTTTTTAACTTCATTTTTTTGC
Found at i:66172 original size:15 final size:14
Alignment explanation
Indices: 66154--66191 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
66144 TTTAACTTGA
66154 TTTTTTTGCTCACT
1 TTTTTTTGCTCACT
* *
66168 TTTTTTTTCT-TCT
1 TTTTTTTGCTCACT
66181 TTTTTTTGCTC
1 TTTTTTTGCTC
66192 GATTTTTTCA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
13 11 0.55
14 9 0.45
ACGTcount: A:0.03, C:0.18, G:0.05, T:0.74
Consensus pattern (14 bp):
TTTTTTTGCTCACT
Found at i:66217 original size:10 final size:11
Alignment explanation
Indices: 66203--66227 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
66193 ATTTTTTCAC
66203 TTTTTTTTGAA
1 TTTTTTTTGAA
66214 TTTTTTTTGAA
1 TTTTTTTTGAA
66225 TTT
1 TTT
66228 CGATTTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.08, T:0.76
Consensus pattern (11 bp):
TTTTTTTTGAA
Found at i:67588 original size:11 final size:10
Alignment explanation
Indices: 67563--67623 Score: 54
Period size: 10 Copynumber: 6.1 Consensus size: 10
67553 ACCAATAAAA
67563 TAAA-TGAGC
1 TAAATTGAGC
*
67572 TGAATTGTAGC
1 TAAATTG-AGC
67583 TAAATTGAGC
1 TAAATTGAGC
**
67593 TCGATTGAGC
1 TAAATTGAGC
67603 TGAAA-TGAGC
1 T-AAATTGAGC
*
67613 TCAATTGAGC
1 TAAATTGAGC
67623 T
1 T
67624 GGTCGGAGTT
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
9 5 0.12
10 26 0.63
11 10 0.24
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.30
Consensus pattern (10 bp):
TAAATTGAGC
Found at i:67624 original size:20 final size:20
Alignment explanation
Indices: 67564--67624 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 20
67554 CCAATAAAAT
*
67564 AAATGAGCTGAATTGTAGCT-
1 AAATGAGCTCAATTG-AGCTG
*
67584 AAATTGAGCTCGATTGAGCTG
1 AAA-TGAGCTCAATTGAGCTG
67605 AAATGAGCTCAATTGAGCTG
1 AAATGAGCTCAATTGAGCTG
67625 GTCGGAGTTG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 23 0.64
21 13 0.36
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (20 bp):
AAATGAGCTCAATTGAGCTG
Found at i:69708 original size:18 final size:18
Alignment explanation
Indices: 69687--69721 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
69677 TTTTTCTTTT
69687 TCAATTT-TTTTCTCAATC
1 TCAATTTCTTTT-TCAATC
69705 TCAATTTCTTTTTCAAT
1 TCAATTTCTTTTTCAAT
69722 TTTCTTTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.23, C:0.20, G:0.00, T:0.57
Consensus pattern (18 bp):
TCAATTTCTTTTTCAATC
Found at i:69718 original size:6 final size:6
Alignment explanation
Indices: 69709--69813 Score: 52
Period size: 6 Copynumber: 17.2 Consensus size: 6
69699 TCAATCTCAA
* * * ** **
69709 TTTCTT TTTCAAT TTTCTTT TCTTCAT TTTCTT TTTCTC TCACTAT TTTGAT
1 TTTCTT TTTC-TT TTTC-TT T-TTCTT TTTCTT TTTCTT TTTCT-T TTTCTT
* ** * *
69761 TT-CTT TTTCTT TTGCAA TTTCTT TTTCTT TTTCGT TTTCTT TTT-GT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT
69807 TTTCTT T
1 TTTCTT T
69814 CAATTTCTTT
Statistics
Matches: 69, Mismatches: 25, Indels: 10
0.66 0.24 0.10
Matches are distributed among these distances:
5 7 0.10
6 49 0.71
7 10 0.14
8 3 0.04
ACGTcount: A:0.08, C:0.17, G:0.04, T:0.71
Consensus pattern (6 bp):
TTTCTT
Found at i:69826 original size:6 final size:6
Alignment explanation
Indices: 69760--69813 Score: 56
Period size: 6 Copynumber: 9.2 Consensus size: 6
69750 ACTATTTTGA
* ** * *
69760 TTTCTT TTTCTT TTGCAA TTTCTT TTTCTT TTTCGT TTTCTT TTT-GT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT
69807 TTTCTT T
1 TTTCTT T
69814 CAATTTCTTT
Statistics
Matches: 37, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
5 4 0.11
6 33 0.89
ACGTcount: A:0.04, C:0.15, G:0.06, T:0.76
Consensus pattern (6 bp):
TTTCTT
Found at i:70908 original size:11 final size:11
Alignment explanation
Indices: 70894--70918 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
70884 TATTTTCACT
70894 TTTTTTTTGAA
1 TTTTTTTTGAA
70905 TTTTTTTTGAA
1 TTTTTTTTGAA
70916 TTT
1 TTT
70919 CGATTTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.08, T:0.76
Consensus pattern (11 bp):
TTTTTTTTGAA
Found at i:72282 original size:11 final size:10
Alignment explanation
Indices: 72257--72317 Score: 54
Period size: 10 Copynumber: 6.1 Consensus size: 10
72247 ACCAATAAAA
72257 TAAA-TGAGC
1 TAAATTGAGC
*
72266 TGAATTGTAGC
1 TAAATTG-AGC
72277 TAAATTGAGC
1 TAAATTGAGC
**
72287 TCGATTGAGC
1 TAAATTGAGC
72297 TGAAA-TGAGC
1 T-AAATTGAGC
*
72307 TCAATTGAGC
1 TAAATTGAGC
72317 T
1 T
72318 GGTCGGAGTT
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
9 5 0.12
10 26 0.63
11 10 0.24
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.30
Consensus pattern (10 bp):
TAAATTGAGC
Found at i:72318 original size:20 final size:20
Alignment explanation
Indices: 72258--72318 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 20
72248 CCAATAAAAT
*
72258 AAATGAGCTGAATTGTAGCT-
1 AAATGAGCTCAATTG-AGCTG
*
72278 AAATTGAGCTCGATTGAGCTG
1 AAA-TGAGCTCAATTGAGCTG
72299 AAATGAGCTCAATTGAGCTG
1 AAATGAGCTCAATTGAGCTG
72319 GTCGGAGTTG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 23 0.64
21 13 0.36
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (20 bp):
AAATGAGCTCAATTGAGCTG
Found at i:73212 original size:20 final size:20
Alignment explanation
Indices: 73189--73235 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
73179 GGGTTAAGAT
*
73189 TGAGCTGAATTGAGCTTGAA
1 TGAGCTGAATTGAGCTCGAA
* * *
73209 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAA
73229 TGAGCTG
1 TGAGCTG
73236 GAAACGAGCT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.23, C:0.13, G:0.34, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAA
Found at i:78612 original size:40 final size:38
Alignment explanation
Indices: 78521--78742 Score: 173
Period size: 40 Copynumber: 5.6 Consensus size: 38
78511 TCCTCGTTCA
* * * * *
78521 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAAT-ACTCGCAC
*
78560 AGTGCCTTCGGGACTTAACCCGGATTTAATGACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAAT-ACTCGCAC
78599 GAATGCCTTCGGGACTTAACCCGGATTTAATATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATA-CTCGCAC
* *
78639 AAAGGCCTTCGGGGCTTAACCCGGAACTTGT-AT-CTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-A-TT-TAATACTCGCAC
** * * *
78679 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAAT-AC-TCGCAC
* *
78720 AAAGCCTTC-GGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
78743 CAGCATTCAA
Statistics
Matches: 153, Mismatches: 20, Indels: 20
0.79 0.10 0.10
Matches are distributed among these distances:
37 1 0.01
38 2 0.01
39 46 0.30
40 93 0.61
41 6 0.04
42 4 0.03
43 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (38 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATACTCGCAC
Found at i:78676 original size:80 final size:78
Alignment explanation
Indices: 78519--78690 Score: 197
Period size: 80 Copynumber: 2.2 Consensus size: 78
78509 GCTCCTCGTT
* * * *
78519 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAGTGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACATAACCCGGATTTAATAACTCACAAAGTGCCTTCGGGACTTAACCCGGA
78584 TTTAATGACTCGCA
66 TTTAAT-ACTCGCA
* * * *
78598 CGAATGCCTTCGGGACTTAACCCGGATTTAATATCTCGCACAAAG-GCCTTCGGGGCTTAACCCG
1 CAAATGCCTTCGGGACATAACCCGGATTTAATAACT--CACAAAGTGCCTTCGGGACTTAACCCG
78662 GAACTTGT-AT-CTCGCA
64 G-A-TT-TAATACTCGCA
78678 CAAATGCCTTCGG
1 CAAATGCCTTCGG
78691 ATCTTAGTCC
Statistics
Matches: 79, Mismatches: 9, Indels: 9
0.81 0.09 0.09
Matches are distributed among these distances:
79 30 0.38
80 37 0.47
81 7 0.09
82 4 0.05
83 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAATAACTCACAAAGTGCCTTCGGGACTTAACCCGGA
TTTAATACTCGCA
Found at i:78751 original size:40 final size:41
Alignment explanation
Indices: 78675--78751 Score: 104
Period size: 40 Copynumber: 1.9 Consensus size: 41
78665 CTTGTATCTC
* * *
78675 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
78716 GCACAAA-GCCTTCGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACA-CATTCA
78752 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
39 11 0.34
40 14 0.44
41 7 0.22
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:84479 original size:24 final size:25
Alignment explanation
Indices: 84452--84501 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
84442 ATGGCTATAC
84452 ACTTATACA-TTCATAAAGTACTCG
1 ACTTATACATTTCATAAAGTACTCG
84476 ACTTATACATTTCATAAAGTACTCG
1 ACTTATACATTTCATAAAGTACTCG
84501 A
1 A
84502 AAAACAACAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 9 0.36
25 16 0.64
ACGTcount: A:0.38, C:0.20, G:0.08, T:0.34
Consensus pattern (25 bp):
ACTTATACATTTCATAAAGTACTCG
Found at i:85049 original size:39 final size:40
Alignment explanation
Indices: 85004--85227 Score: 231
Period size: 40 Copynumber: 5.7 Consensus size: 40
84994 GCTCCTCGTT
* * * * *
85004 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
85044 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
* *
85083 CGAATGCCTTCGGGACTTAACCCGGATTTAATATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
* * * * *
85123 CAAAGGCCTTCGGGGCTTAACCCGGAATT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
** * * * *
85162 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCA
*
85203 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
85228 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
38 2 0.01
39 63 0.40
40 81 0.52
41 11 0.07
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
Found at i:85107 original size:79 final size:78
Alignment explanation
Indices: 85004--85227 Score: 243
Period size: 79 Copynumber: 2.8 Consensus size: 78
84994 GCTCCTCGTT
* * * *
85004 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAATAACTCACACAAAGCCTTCGGGACTTAACCCGGA
*
85069 TTTAATAACTCGCA
66 ATT-ATAACTCGCA
* * * * *
85083 CGAATGCCTTCGGGACTTAACCCGGATTTAATATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAATAACTCACACAAA-GCCTTCGGGACTTAACCCGG
* *
85148 AATTGTATCTCGCA
65 AATTATAACTCGCA
* * * * * *
85162 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAATAACTCA-CACAAAGCCTTCGGGACTTAACCCG
85226 GA
64 GA
85228 CAGCATTCAA
Statistics
Matches: 119, Mismatches: 23, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
78 3 0.03
79 88 0.74
80 28 0.24
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAATAACTCACACAAAGCCTTCGGGACTTAACCCGGA
ATTATAACTCGCA
Found at i:85236 original size:41 final size:41
Alignment explanation
Indices: 85159--85236 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
85149 ATTGTATCTC
* * *
85159 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
85200 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
85237 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:91435 original size:27 final size:27
Alignment explanation
Indices: 91401--91551 Score: 171
Period size: 27 Copynumber: 5.6 Consensus size: 27
91391 TTAAATGTAC
91401 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* **
91428 TGCACTAAGTGTGCGAAATGA-T-TGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
91453 GATGCACTAAGTGTGCGAATTGACCATGC
1 -A-GCACTAAGTGTGCGATTTGACTATGT
*
91482 GGCACTAAGTGTGCGAATTTGACTATGT
1 AGCACTAAGTGTGCG-ATTTGACTATGT
* *
91510 AGCACTAAGTGTGCGATTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
91537 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
91552 GACTCATATG
Statistics
Matches: 104, Mismatches: 15, Indels: 10
0.81 0.12 0.08
Matches are distributed among these distances:
25 3 0.03
26 1 0.01
27 75 0.72
28 23 0.22
29 2 0.02
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:91505 original size:82 final size:81
Alignment explanation
Indices: 91402--91551 Score: 230
Period size: 82 Copynumber: 1.8 Consensus size: 81
91392 TAAATGTACA
* *
91402 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGATTGTGAT-GCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGATTAT-ATAGCACTAAGTG
91466 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
91483 GCACTAAGTGTGCGAATTTGACTATGTAGCACTAAGTGTGCGATTTGATTATATAGCACTGAGTG
1 GCACTAAGTGTGCG-ATTTGACTATGTAGCACTAAGTGTGCGAAATGATTATATAGCACTAAGTG
91548 TGCG
65 TGCG
91552 GACTCATATG
Statistics
Matches: 62, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 16 0.26
82 46 0.74
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGATTATATAGCACTAAGTGT
GCGAATTGACCATGCG
Done.