Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2286
Parameters: 2 7 7 80 10 50 1000
Length:  72843

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5458--5551
18
5.4
18
92
3
131
36
25
9
28
1.87
5458--5538
9
9.0
9
70
0
54
34
27
9
28
1.89
7911--7999
21
4.1
21
84
5
90
53
10
23
12
1.68
7911--7979
21
3.3
21
87
2
95
55
8
24
11
1.64
12137--12165
14
2.1
14
100
0
58
51
6
13
27
1.66
14921--14960
13
2.8
15
85
14
66
65
0
0
35
0.93
26698--26722
12
2.1
12
100
0
50
48
8
0
44
1.32
29243--29281
21
1.9
20
94
5
69
33
10
25
30
1.89
29461--29499
16
2.6
15
84
11
53
56
0
0
43
0.99
29467--29518
16
3.0
18
81
10
56
59
0
0
40
0.97
31240--31273
14
2.6
13
86
13
52
55
0
0
44
0.99
38507--38540
17
2.0
17
94
0
59
47
11
2
38
1.55
43115--43198
20
4.4
19
73
23
70
59
1
5
33
1.29
46622--46652
15
2.1
15
100
0
62
48
19
19
12
1.81
51377--51419
18
2.4
18
88
0
59
9
13
6
69
1.35
52041--52072
15
2.0
17
88
11
50
56
9
3
31
1.47
52119--52178
31
1.9
31
96
0
111
48
8
1
41
1.43
52239--52277
17
2.3
17
86
8
53
69
5
2
23
1.21
52340--52370
9
3.4
9
95
0
53
58
0
0
41
0.98
52329--52371
9
4.8
9
85
0
50
62
0
2
34
1.08
52353--52396
19
2.2
21
88
8
65
63
0
2
34
1.07
52550--52577
13
2.2
13
100
0
56
46
7
0
46
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52975--53082
25
4.2
25
70
13
69
34
4
0
61
1.17
52986--53094
16
6.4
17
70
17
75
34
3
0
61
1.14
53018--53088
25
2.8
26
81
12
76
35
2
0
61
1.10
54365--54398
14
2.4
14
90
0
50
14
17
0
67
1.23
55716--55766
16
3.2
16
97
0
93
52
13
11
21
1.72
56684--56717
16
2.1
17
94
5
61
23
11
0
64
1.26
57392--57422
15
2.1
15
100
0
62
67
0
12
19
1.22
63110--63154
23
2.0
22
83
12
56
44
0
2
53
1.13
63131--63352
8
28.2
8
67
25
79
32
3
1
62
1.21
63178--63399
15
14.3
15
69
21
81
29
3
1
65
1.18
63190--63347
26
5.3
30
75
16
116
32
3
1
63
1.18
63222--63324
6
16.5
6
72
16
68
33
1
0
64
1.05
63227--63434
55
4.1
48
73
21
122
29
1
2
65
1.18
63182--63354
80
2.1
84
78
14
191
31
2
1
64
1.15
63178--63434
7
35.9
7
68
23
121
29
2
2
64
1.19
63219--63399
55
3.4
52
77
18
158
29
2
2
66
1.16
63178--63378
19
10.6
18
71
18
97
29
3
0
66
1.15
63178--63402
11
22.0
10
71
18
121
29
3
1
65
1.18
63308--63431
29
4.4
30
74
18
99
25
2
4
66
1.23
63381--63459
40
2.0
40
80
14
92
37
0
6
55
1.25
63434--63508
31
2.4
32
84
10
93
50
1
4
44
1.29

Tables:   1

The End!