genome.fa.s106.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3310
Parameters: 2 7 7 80 10 50 1000
Length:  97120

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3248--3511	46	5.6	47	76	12	197	26	29	17	27	1.97
6606--6776	66	2.6	66	82	6	177	32	16	28	22	1.96
6630--6812	66	2.8	64	79	7	210	28	16	30	23	1.97
13082--13110	14	2.1	14	100	0	58	58	20	6	13	1.58
18877--18976	47	2.1	47	94	0	173	34	14	24	28	1.93
18955--19151	54	3.6	54	82	4	236	36	16	24	21	1.94
18963--19181	108	2.0	109	86	4	309	36	16	24	21	1.94
24699--24760	30	2.1	30	81	6	72	35	12	20	30	1.91
25532--25631	47	2.1	47	94	0	173	35	14	24	27	1.93
25618--25806	55	3.5	54	82	5	229	35	17	25	20	1.95
25618--25817	53	3.7	54	79	7	208	35	17	25	21	1.95
25618--25841	108	2.1	109	86	4	310	37	17	24	20	1.94
34390--34727	47	7.1	49	91	4	541	32	8	31	28	1.86
34419--34497	25	3.3	25	63	22	69	31	5	31	31	1.79
34396--34727	96	3.5	94	91	4	540	32	8	31	27	1.87
36660--36753	38	2.5	38	85	0	125	31	17	26	24	1.97
36830--36980	40	3.8	39	88	3	212	21	23	28	25	1.99
36838--36985	80	1.9	80	89	2	235	22	23	28	25	1.99
37149--37203	25	2.2	25	87	6	76	30	12	29	27	1.93
37555--37593	15	2.6	16	88	8	55	30	0	33	35	1.58
40983--41241	16	16.3	15	63	23	68	33	6	31	28	1.84
40961--41292	47	7.0	47	91	2	504	33	7	31	28	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40996--41071	25	3.2	25	62	24	63	32	6	31	28	1.83
41086--41181	49	2.2	42	77	20	106	33	8	30	28	1.86
40961--41292	96	3.5	94	89	4	504	33	7	31	28	1.85
42607--42739	51	2.6	51	83	3	153	26	17	26	30	1.97
42655--42801	51	2.9	51	80	2	143	26	15	27	30	1.96
47575--47645	26	2.8	26	85	12	103	23	21	22	32	1.98
51468--51654	92	2.0	92	98	0	365	30	14	26	27	1.95
56321--56387	20	3.3	20	87	8	109	34	10	20	34	1.87
56435--56502	26	2.7	26	93	4	113	25	26	22	26	2.00
56435--56518	26	3.4	24	88	6	89	28	22	21	27	1.99
56726--56789	31	2.1	31	87	0	92	37	14	23	25	1.92
58745--58772	14	2.0	14	100	0	56	50	7	14	28	1.69
59989--60120	50	2.6	51	84	1	167	25	18	27	29	1.98
59989--60180	51	3.8	50	81	0	168	25	16	27	30	1.97
60056--60225	51	3.3	51	80	3	155	25	18	28	27	1.98
71433--71681	54	4.6	54	84	5	306	22	23	17	37	1.94
71660--71781	47	2.6	47	90	0	199	27	22	12	37	1.90
71785--71917	45	2.9	46	77	6	117	23	24	19	33	1.97
74160--74459	55	5.5	54	79	5	329	24	23	16	35	1.95
74160--74457	109	2.7	109	93	1	492	23	23	16	35	1.95
76695--76736	18	2.3	18	81	18	52	21	4	14	59	1.53
76898--77081	67	2.8	64	78	7	201	29	16	30	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80660--80963	46	6.4	48	75	10	186	25	30	18	25	1.98
86286--86508	49	4.6	50	74	15	132	26	19	30	24	1.98
86868--86904	19	1.9	19	100	0	74	21	10	27	40	1.86

Tables:   1

The End!