Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1905
Parameters: 2 7 7 80 10 50 1000
Length:  64931

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5533--5570
12
3.1
13
81
11
53
13
7
5
73
1.22
5533--5580
24
2.0
24
87
0
69
12
8
8
70
1.32
7038--7089
27
1.9
27
88
0
77
25
13
28
32
1.93
15085--15262
27
6.6
27
83
3
205
26
15
28
29
1.96
15086--15241
82
1.9
81
88
3
233
26
15
28
29
1.96
15082--15262
82
2.2
81
83
2
229
27
15
27
29
1.96
32447--32488
14
2.9
14
85
7
57
16
2
2
78
0.96
33928--33981
20
2.7
20
82
0
63
24
20
18
37
1.94
33928--34001
30
2.5
30
86
8
98
21
20
18
39
1.93
33928--33992
20
3.2
20
71
16
53
23
21
16
38
1.93
36681--36836
12
13.6
12
67
18
55
67
1
18
11
1.30
36689--36839
18
8.4
18
71
15
82
68
1
18
11
1.29
36687--36837
27
5.5
27
70
19
91
68
1
17
11
1.30
36703--36839
6
22.7
6
68
6
62
69
2
18
10
1.27
36681--36890
56
3.9
52
75
13
174
66
2
19
11
1.36
36854--36916
33
1.9
33
84
12
85
53
6
26
12
1.62
39837--39964
12
10.7
12
70
12
57
69
2
18
9
1.26
39860--39967
6
17.7
6
70
6
74
71
2
18
7
1.22
39864--39967
18
5.6
18
73
10
93
71
2
18
7
1.23
39928--39965
13
2.8
13
82
17
51
73
0
18
7
1.06
39929--39979
21
2.4
21
74
6
50
74
1
17
5
1.11
39982--40044
33
1.9
33
84
12
85
55
6
25
12
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41819--41872
20
2.7
20
82
0
63
24
20
18
37
1.94
41819--41892
30
2.5
30
86
8
98
21
20
18
39
1.93
41819--41883
20
3.2
20
71
16
53
23
21
16
38
1.93
42586--42640
20
2.8
20
82
0
65
23
20
20
36
1.95
42587--42660
30
2.5
30
86
8
98
21
20
18
39
1.93
42587--42651
20
3.2
20
71
16
53
23
21
16
38
1.93
41692--44031
768
3.0
768
96
2
4259
27
17
18
36
1.94
43355--43458
30
3.5
30
92
5
158
21
21
19
38
1.94
49608--49637
12
2.5
12
100
0
60
80
0
6
13
0.91
49565--49645
43
1.9
42
82
7
101
71
2
18
7
1.21
51713--52300
40
14.7
40
94
0
1005
22
26
20
30
1.98
59453--60040
40
14.7
40
94
0
1005
22
26
20
30
1.98

Tables:   1

The End!