Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2574
Parameters: 2 7 7 80 10 50 1000
Length:  63210

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6476--6528
23
2.4
22
76
20
56
9
18
1
69
1.25
7959--8005
20
2.3
20
85
0
67
29
36
12
21
1.91
7970--8014
16
2.9
16
87
9
67
33
31
11
24
1.90
15022--15072
22
2.3
21
86
6
66
35
33
3
27
1.75
15027--15089
21
3.0
21
85
2
72
34
31
3
30
1.74
15420--15460
16
2.6
16
96
0
73
75
0
14
9
1.04
15421--15464
17
2.7
16
92
3
70
72
0
13
13
1.12
17670--17714
19
2.3
20
84
7
65
77
2
13
6
1.05
29432--29468
4
9.0
4
88
5
56
75
0
0
24
0.80
35030--35115
30
2.9
30
75
3
102
29
27
16
26
1.97
35030--35125
30
3.2
31
75
8
101
28
28
17
26
1.98
36118--36151
4
9.0
4
87
12
54
23
0
0
76
0.79
42539--42593
20
2.8
20
88
0
83
29
16
29
25
1.97
44026--44071
20
2.3
20
84
0
56
23
19
17
39
1.92
44018--44091
30
2.5
30
84
8
80
22
20
18
37
1.94
45674--45745
11
6.0
12
73
20
53
70
5
8
15
1.30
45683--45755
12
5.6
13
73
25
57
71
5
9
13
1.30
45721--45782
26
2.4
26
86
5
81
74
6
14
4
1.19
45674--45767
37
2.5
38
82
6
111
73
5
9
11
1.24
45674--45767
38
2.5
38
82
3
102
73
5
9
11
1.24
46815--46920
6
17.7
6
67
10
56
71
3
17
6
1.23
46804--46875
18
3.9
18
76
7
65
72
5
15
6
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46881--46918
13
2.8
13
82
17
51
73
0
18
7
1.06
46882--46932
21
2.4
21
74
6
50
74
1
17
5
1.11
46935--46997
33
1.9
33
84
12
85
53
6
26
12
1.62
53534--53579
20
2.3
20
84
0
56
23
19
17
39
1.92
53526--53599
30
2.5
30
84
8
80
22
20
18
37
1.94
61364--61393
11
2.7
11
100
0
60
26
46
10
16
1.78
63001--63050
25
2.0
26
88
4
75
40
22
12
26
1.88
63087--63139
11
5.0
11
75
6
56
37
13
18
30
1.89
63087--63144
21
2.8
21
84
5
73
37
12
18
31
1.88

Tables:   1

The End!