Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3016
Parameters: 2 7 7 80 10 50 1000
Length:  58099

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4947--4981
11
3.2
11
84
15
54
8
28
5
57
1.52
5978--6145
39
4.3
39
75
15
152
25
20
27
26
1.99
5971--6145
78
2.2
77
79
8
194
26
20
27
26
1.99
5927--6143
39
5.6
40
77
10
137
26
20
27
25
1.99
15348--15572
40
5.7
40
82
6
233
25
28
21
25
1.99
15504--15581
40
1.9
41
82
10
97
26
28
20
24
1.99
22861--23083
40
5.7
40
83
6
240
25
27
21
25
1.99
22861--23083
79
2.8
78
81
5
252
25
27
21
25
1.99
23015--23092
40
1.9
41
82
10
97
26
28
20
24
1.99
25392--25525
43
3.0
45
82
6
173
31
8
12
47
1.73
25857--25882
9
2.9
9
100
0
52
23
0
0
76
0.78
45631--45709
26
3.0
26
100
0
158
54
11
3
30
1.54
52044--52494
47
9.4
47
89
4
632
31
9
29
29
1.88
52611--52688
37
2.1
37
88
2
113
24
17
32
25
1.97
54536--54678
43
3.4
43
95
4
265
22
14
35
27
1.93
54660--54733
29
2.6
29
89
4
105
25
16
32
25
1.96
55080--55274
79
2.5
79
84
3
243
24
22
28
25
1.99
55043--55274
39
5.9
40
84
6
260
23
22
28
25
1.99
55437--55487
25
2.0
25
85
7
68
29
7
33
29
1.85

Tables:   1

The End!