Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1269
Parameters: 2 7 7 80 10 50 1000
Length:  53968

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1935--1975
18
2.3
18
100
0
82
29
17
29
24
1.97
3734--3768
17
2.1
17
88
0
52
60
0
0
40
0.97
5351--5476
28
4.5
28
84
1
164
26
23
13
35
1.92
5351--5476
56
2.3
56
88
1
182
26
23
13
35
1.92
7471--7513
20
2.2
20
86
0
59
46
0
4
48
1.22
7462--7834
152
2.4
152
84
7
493
43
4
9
43
1.55
7780--7823
20
2.2
20
88
8
63
43
2
6
47
1.42
7410--7885
154
3.1
151
78
10
468
43
4
8
43
1.54
8388--8429
21
2.0
21
90
0
66
19
7
4
69
1.31
8396--8453
22
2.7
23
81
7
59
17
6
3
72
1.21
8787--8839
27
2.0
27
96
0
97
26
13
18
41
1.87
9980--10693
358
2.0
357
99
0
1410
26
19
19
35
1.95
22323--22730
42
9.8
42
86
0
525
22
19
22
35
1.96
22323--22730
126
3.3
126
89
1
579
22
19
22
35
1.96
22626--22749
39
3.1
38
81
8
131
21
16
25
37
1.93
23499--23922
159
2.7
155
88
6
615
40
4
10
45
1.59
24462--24508
24
1.9
24
83
12
60
31
6
6
55
1.51
24514--24561
21
2.3
21
88
0
69
29
8
0
62
1.24
24524--24565
21
2.0
21
100
0
84
28
4
0
66
1.12
36155--36210
30
2.0
29
83
13
73
55
0
8
35
1.31
36555--36617
20
3.0
20
72
6
54
58
1
4
34
1.29
40395--40602
43
4.8
42
79
7
211
25
30
18
25
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40802--40838
19
1.9
19
94
0
65
59
2
10
27
1.44
46353--46512
25
6.8
23
76
17
127
35
0
16
48
1.47
46361--46488
41
3.1
41
86
4
179
32
0
17
50
1.46
46361--46512
66
2.3
66
90
2
243
34
0
16
48
1.46
46361--46474
16
7.0
16
78
15
126
33
0
17
49
1.47
46516--46553
20
1.9
20
88
0
58
63
2
0
34
1.09
46516--46566
25
2.1
24
89
10
77
62
3
0
33
1.13
46809--46850
22
1.9
22
95
0
75
38
0
14
47
1.44
47747--47786
12
3.3
12
85
0
53
55
12
7
25
1.63
47736--47797
24
2.7
24
76
14
67
51
14
8
25
1.69
48251--48296
24
2.0
24
86
4
67
28
2
43
26
1.66
48612--48667
16
3.5
16
76
7
60
25
7
3
64
1.35
49340--49447
22
5.0
22
71
9
78
35
42
0
22
1.54
49346--49447
7
14.1
7
72
6
60
34
44
0
21
1.53
49479--49511
14
2.3
15
94
5
59
36
33
0
30
1.58
49890--50239
41
8.5
41
84
1
423
28
29
24
18
1.98
53348--53387
21
1.9
21
84
0
53
45
17
12
25
1.83

Tables:   1

The End!