Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1673
Parameters: 2 7 7 80 10 50 1000
Length:  52640

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4994--5988
191
5.2
191
91
5
1593
30
13
20
35
1.91
6007--6040
16
2.1
16
94
0
59
17
8
5
67
1.37
5933--6340
91
4.6
87
81
10
445
26
17
18
37
1.92
5946--6340
176
2.2
175
84
7
505
27
17
18
36
1.93
6284--6500
52
4.1
54
88
8
320
28
16
17
37
1.92
6772--6873
30
3.4
31
83
5
122
29
22
3
44
1.71
7134--7183
10
5.2
10
80
7
59
70
0
30
0
0.88
7137--7179
19
2.3
19
88
11
63
69
0
30
0
0.88
7249--7281
10
3.4
10
95
4
59
69
0
30
0
0.88
7395--7433
19
2.1
18
85
4
51
76
20
2
0
0.90
7590--7669
15
5.5
15
78
14
78
78
0
21
0
0.75
7590--7679
7
12.7
7
76
16
80
81
0
18
0
0.70
7590--7681
8
11.2
8
75
20
84
80
0
19
0
0.71
7600--7681
15
5.2
15
77
10
83
81
0
18
0
0.69
8222--8264
22
2.0
22
86
8
63
53
16
4
25
1.62
8260--8422
17
9.4
17
78
9
159
30
12
10
47
1.74
8260--8422
35
4.7
34
79
8
168
30
12
10
47
1.74
14199--14292
41
2.3
41
87
1
127
34
22
17
26
1.96
15128--15195
10
6.3
10
76
18
57
2
19
4
73
1.13
15128--15197
12
5.8
11
74
21
52
2
18
4
74
1.11
15888--15977
21
4.3
21
84
4
110
65
1
0
33
1.00
16351--16408
26
2.3
24
75
16
64
48
3
0
48
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16426--16465
13
2.7
16
74
22
50
45
0
0
55
0.99
16484--16524
13
2.9
15
79
20
52
58
0
0
41
0.98
16941--16981
19
2.1
19
86
4
55
53
9
0
36
1.34
23490--23531
16
2.7
16
88
3
59
35
2
4
57
1.33
32770--32844
32
2.3
32
86
8
100
41
28
14
16
1.87
37402--37445
18
2.3
18
84
7
52
65
0
4
29
1.12
38354--38396
20
2.2
20
83
8
52
30
25
9
34
1.87
41554--41714
43
3.8
43
90
4
238
29
20
25
24
1.99
43151--43183
16
2.1
16
88
11
50
27
0
6
66
1.15

Tables:   1

The End!