genome.fa.s1073.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2999
Parameters: 2 7 7 80 10 50 1000
Length:  51001

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5874--5911	20	1.9	20	94	0	67	36	0	18	44	1.50
6123--6380	41	6.3	41	88	0	390	29	19	27	22	1.98
6123--6374	82	3.1	82	98	0	477	29	19	28	22	1.98
14410--14443	16	2.1	16	88	0	50	50	14	17	17	1.79
17226--17266	21	2.0	21	90	0	64	29	21	29	19	1.98
19172--19205	16	2.1	16	88	0	50	52	11	17	17	1.73
26318--26372	21	2.6	22	77	13	62	16	20	38	25	1.92
28237--28299	19	3.3	19	68	23	51	39	7	1	50	1.41
31508--31540	15	2.2	15	89	10	50	9	21	0	69	1.15
32020--32060	16	2.5	16	92	4	64	17	2	7	73	1.17
33518--33870	44	7.8	44	70	14	209	31	18	20	28	1.97
33556--33808	94	2.7	94	89	1	364	29	20	20	29	1.98
33647--33915	138	1.9	138	82	3	335	31	20	20	27	1.97
33453--33898	232	1.9	232	81	3	531	31	19	19	28	1.97
35421--35465	24	1.9	24	95	4	83	0	22	8	68	1.16
36675--36708	15	2.2	16	89	5	52	0	14	5	79	0.91
39358--39427	30	2.3	30	82	0	86	38	11	12	37	1.80
40984--41082	41	2.4	40	75	11	101	34	3	14	48	1.59
41089--41179	40	2.4	38	81	13	109	32	5	9	51	1.58
41016--41179	76	2.2	77	82	7	201	31	4	12	51	1.60
43159--43217	22	2.7	22	86	0	82	15	10	50	23	1.74
44085--44917	73	11.0	72	78	13	651	33	20	17	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44086--44997	158	5.9	154	76	15	532	33	20	17	28	1.95
44354--44915	73	7.6	73	85	7	652	32	20	16	30	1.95
44159--45155	231	4.3	225	79	11	915	33	20	17	28	1.96
44162--45161	304	3.2	303	78	12	897	33	20	17	27	1.95
44840--45079	87	2.8	87	83	6	274	34	20	17	27	1.95
45304--45652	78	4.5	77	82	9	401	31	19	15	33	1.93
45343--45666	74	4.3	74	78	13	279	34	18	15	32	1.92
45304--45666	152	2.4	150	80	9	403	33	19	15	32	1.92

Tables:   1

The End!