Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1353
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 44790
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Found at i:1483 original size:21 final size:21
Alignment explanation
Indices: 1440--1500 Score: 88
Period size: 21 Copynumber: 3.0 Consensus size: 21
1430 TTTGAACCGT
* *
1440 TACCA-TTCGTACAAATACCA
1 TACCATTTCGTACCAATTCCA
*
1460 TACCATTTCATACCAATTCCA
1 TACCATTTCGTACCAATTCCA
1481 TACCATTTCGTACCAATTCC
1 TACCATTTCGTACCAATTCC
1501 CAAATACCAA
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
20 5 0.14
21 31 0.86
ACGTcount: A:0.33, C:0.33, G:0.03, T:0.31
Consensus pattern (21 bp):
TACCATTTCGTACCAATTCCA
Found at i:1930 original size:21 final size:21
Alignment explanation
Indices: 1904--1966 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
1894 TTGGTATTTG
1904 GGAATTGGTACGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
*
1925 GGAATTGGTATGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
* *
1946 GGTATTTGGTACGAATTGGTA
1 GG-AATTGGTACGAAATGGTA
1967 ACGGTTCAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 22 0.59
22 15 0.41
ACGTcount: A:0.30, C:0.03, G:0.33, T:0.33
Consensus pattern (21 bp):
GGAATTGGTACGAAATGGTAT
Found at i:2455 original size:21 final size:21
Alignment explanation
Indices: 2410--2472 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
2400 TTTGAACCAT
* *
2410 TACCAATTCGTACCAAATACCA
1 TACCATTTCGTACC-AATTCCA
2432 TACCATTTCGTACCAATTCCA
1 TACCATTTCGTACCAATTCCA
* *
2453 TACTATTTCGAACCAATTCC
1 TACCATTTCGTACCAATTCC
2473 CAAATACCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 24 0.65
22 13 0.35
ACGTcount: A:0.33, C:0.32, G:0.05, T:0.30
Consensus pattern (21 bp):
TACCATTTCGTACCAATTCCA
Found at i:5808 original size:33 final size:33
Alignment explanation
Indices: 5770--5832 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
5760 GATTACTCAC
5770 TTCACTCG-TTTCTTTT-ACAGACTCTCTTTCTTT
1 TTCACTCGATTTCTTTTCA-AG-CTCTCTTTCTTT
*
5803 TTCACTTGATTTCTTTTCAAGCTCTCTTTC
1 TTCACTCGATTTCTTTTCAAGCTCTCTTTC
5833 AATTTCTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
33 16 0.59
34 10 0.37
35 1 0.04
ACGTcount: A:0.13, C:0.27, G:0.06, T:0.54
Consensus pattern (33 bp):
TTCACTCGATTTCTTTTCAAGCTCTCTTTCTTT
Found at i:5856 original size:6 final size:6
Alignment explanation
Indices: 5847--5965 Score: 55
Period size: 6 Copynumber: 19.2 Consensus size: 6
5837 TCTTTTTTCG
* * * **
5847 CTTTTT CTTTTT CAATTTT CTTTTCTT CATTTT CTTTTT CTCTCA CTTTTT
1 CTTTTT CTTTTT C-TTTTT C-TTT-TT CTTTTT CTTTTT CTTTTT CTTTTT
* ** *
5898 CGATTTTT TTTTTT GCAATTT C-TTTT CTTTTT C-TTTT CGTTTT CTTTTT
1 C--TTTTT CTTTTT -CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT
**
5947 -TTCTTT CAATTT CTTTTT C
1 CTT-TTT CTTTTT CTTTTT C
5966 AATCTCTTTC
Statistics
Matches: 83, Mismatches: 21, Indels: 18
0.68 0.17 0.15
Matches are distributed among these distances:
5 11 0.13
6 52 0.63
7 12 0.14
8 8 0.10
ACGTcount: A:0.08, C:0.18, G:0.03, T:0.71
Consensus pattern (6 bp):
CTTTTT
Found at i:5859 original size:21 final size:21
Alignment explanation
Indices: 5830--5885 Score: 51
Period size: 21 Copynumber: 2.7 Consensus size: 21
5820 CAAGCTCTCT
*
5830 TTCAATTTCTTTTTTCGCTTT-
1 TTCATTTTCTTTTTTC-CTTTC
* ** *
5851 TTCTTTTTCAATTTTCTTTTC
1 TTCATTTTCTTTTTTCCTTTC
5872 TTCATTTTCTTTTT
1 TTCATTTTCTTTTT
5886 CTCTCACTTT
Statistics
Matches: 26, Mismatches: 8, Indels: 2
0.72 0.22 0.06
Matches are distributed among these distances:
20 3 0.12
21 23 0.88
ACGTcount: A:0.09, C:0.18, G:0.02, T:0.71
Consensus pattern (21 bp):
TTCATTTTCTTTTTTCCTTTC
Found at i:5859 original size:27 final size:27
Alignment explanation
Indices: 5829--5923 Score: 81
Period size: 27 Copynumber: 3.5 Consensus size: 27
5819 TCAAGCTCTC
5829 TTTCAATTTCTTTTTTCGCTTTTTCTT
1 TTTCAATTTCTTTTTTCGCTTTTTCTT
*
5856 TTTCAATTTTCTTTTCTT--CATTTTCTT
1 TTTCAA-TTTCTTTT-TTCGCTTTTTCTT
* * * *
5883 TTTC--TCTCACTTTTTCGATTTTTTTT
1 TTTCAATTTC-TTTTTTCGCTTTTTCTT
5909 TTTGCAATTTCTTTT
1 TTT-CAATTTCTTTT
5924 CTTTTTCTTT
Statistics
Matches: 52, Mismatches: 8, Indels: 15
0.69 0.11 0.20
Matches are distributed among these distances:
24 5 0.10
25 3 0.06
26 9 0.17
27 19 0.37
28 11 0.21
29 5 0.10
ACGTcount: A:0.09, C:0.18, G:0.03, T:0.69
Consensus pattern (27 bp):
TTTCAATTTCTTTTTTCGCTTTTTCTT
Found at i:5878 original size:14 final size:14
Alignment explanation
Indices: 5829--5885 Score: 57
Period size: 14 Copynumber: 4.1 Consensus size: 14
5819 TCAAGCTCTC
5829 TTTCAA-TTTCTTT
1 TTTCAATTTTCTTT
**
5842 TTTCGCTTTT-TCTT
1 TTTCAATTTTCT-TT
5856 TTTCAATTTTCTTT
1 TTTCAATTTTCTTT
5870 TCTTC-ATTTTCTTT
1 T-TTCAATTTTCTTT
5884 TT
1 TT
5886 CTCTCACTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
13 6 0.17
14 26 0.72
15 4 0.11
ACGTcount: A:0.09, C:0.18, G:0.02, T:0.72
Consensus pattern (14 bp):
TTTCAATTTTCTTT
Found at i:7036 original size:13 final size:13
Alignment explanation
Indices: 6953--7040 Score: 50
Period size: 14 Copynumber: 6.2 Consensus size: 13
6943 CTCGCAAGAC
6953 TTTTCACTTTTTT
1 TTTTCACTTTTTT
**
6966 TTTAAACTTGATTTT
1 TTTTCACTT--TTTT
6981 TTTGCTCACCTTTTTT
1 TTT--TCA-CTTTTTT
**
6997 TTCTTTTCTTTTTT
1 TT-TTCACTTTTTT
* * *
7011 TTTGCTCGATTTTT
1 TTTTCAC-TTTTTT
7025 TTTTCACTTTTTT
1 TTTTCACTTTTTT
7038 TTT
1 TTT
7041 CAATCAAATT
Statistics
Matches: 56, Mismatches: 12, Indels: 14
0.68 0.15 0.17
Matches are distributed among these distances:
13 18 0.32
14 19 0.34
15 8 0.14
16 6 0.11
17 2 0.04
18 3 0.05
ACGTcount: A:0.09, C:0.15, G:0.05, T:0.72
Consensus pattern (13 bp):
TTTTCACTTTTTT
Found at i:7039 original size:30 final size:30
Alignment explanation
Indices: 6977--7040 Score: 78
Period size: 30 Copynumber: 2.1 Consensus size: 30
6967 TTAAACTTGA
*
6977 TTTTTTTGCTCACCTTTTTTTTCTTTTCTT
1 TTTTTTTGCTCACCTTTTTTTTCCTTTCTT
*
7007 TTTTTTTGCTCGA-TTTTTTTTTCACTTT-TT
1 TTTTTTTGCTC-ACCTTTTTTTTC-CTTTCTT
7037 TTTT
1 TTTT
7041 CAATCAAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
30 26 0.87
31 4 0.13
ACGTcount: A:0.05, C:0.16, G:0.05, T:0.75
Consensus pattern (30 bp):
TTTTTTTGCTCACCTTTTTTTTCCTTTCTT
Found at i:7064 original size:14 final size:13
Alignment explanation
Indices: 7020--7071 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 13
7010 TTTTGCTCGA
*
7020 TTTTTTTTTCACT
1 TTTTTTTTTCAAT
7033 TTTTTTTTCAATCAAAT
1 TTTTTTTT---TC-AAT
7050 TTTTTTTTTCGAAT
1 TTTTTTTTTC-AAT
7064 TTTTTTTT
1 TTTTTTTT
7072 GATTTTTTTG
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
13 8 0.24
14 13 0.39
16 2 0.06
17 10 0.30
ACGTcount: A:0.15, C:0.10, G:0.02, T:0.73
Consensus pattern (13 bp):
TTTTTTTTTCAAT
Found at i:10196 original size:21 final size:21
Alignment explanation
Indices: 10170--10232 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
10160 TTGGTATTTG
10170 GGAATTGGTACGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
*
10191 GGAATTGGTATGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
* *
10212 GGTATTTGGTACGAATTGGTA
1 GG-AATTGGTACGAAATGGTA
10233 ACGGTTCAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 22 0.59
22 15 0.41
ACGTcount: A:0.30, C:0.03, G:0.33, T:0.33
Consensus pattern (21 bp):
GGAATTGGTACGAAATGGTAT
Found at i:11688 original size:11 final size:12
Alignment explanation
Indices: 11665--11691 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
11655 AAAAGAGAAG
11665 AAATTCAAAAAA
1 AAATTCAAAAAA
11677 AAATTCAAAAAA
1 AAATTCAAAAAA
11689 AAA
1 AAA
11692 GAAAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.78, C:0.07, G:0.00, T:0.15
Consensus pattern (12 bp):
AAATTCAAAAAA
Found at i:11746 original size:11 final size:11
Alignment explanation
Indices: 11684--11746 Score: 56
Period size: 11 Copynumber: 5.4 Consensus size: 11
11674 AAAAAATTCA
11684 AAAAAAAAGA-
1 AAAAAAAAGAG
11694 AAAAAAAAGAAGTG
1 AAAAAAAAG-A--G
11708 ACAAAAAAATGAG
1 A-AAAAAAA-GAG
*
11721 AAAAAAAAGAA
1 AAAAAAAAGAG
*
11732 AAAAAAAAGTG
1 AAAAAAAAGAG
11743 AAAA
1 AAAA
11747 GTCTTGCGAG
Statistics
Matches: 44, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
10 9 0.20
11 16 0.36
12 7 0.16
13 2 0.05
14 1 0.02
15 8 0.18
16 1 0.02
ACGTcount: A:0.79, C:0.02, G:0.14, T:0.05
Consensus pattern (11 bp):
AAAAAAAAGAG
Found at i:12080 original size:21 final size:21
Alignment explanation
Indices: 12054--12116 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
12044 TTGGTATTTG
12054 GGAATTGGTTCGAAATGGTAT
1 GGAATTGGTTCGAAATGGTAT
12075 GGAATTGGTAT-GAAATGGTAT
1 GGAATTGGT-TCGAAATGGTAT
* * *
12096 GGTATTTGGTACGAATTGGTA
1 GG-AATTGGTTCGAAATGGTA
12117 ATGGTTCAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
21 21 0.58
22 15 0.42
ACGTcount: A:0.29, C:0.03, G:0.33, T:0.35
Consensus pattern (21 bp):
GGAATTGGTTCGAAATGGTAT
Found at i:12085 original size:11 final size:11
Alignment explanation
Indices: 12054--12116 Score: 51
Period size: 10 Copynumber: 5.9 Consensus size: 11
12044 TTGGTATTTG
12054 GGAATTGGT-T
1 GGAATTGGTAT
* *
12064 CGAAATGGTAT
1 GGAATTGGTAT
12075 GGAATTGGTAT
1 GGAATTGGTAT
*
12086 -GAAATGGTAT
1 GGAATTGGTAT
*
12096 GGTATTTGGTA-
1 GG-AATTGGTAT
*
12107 CGAATTGGTA
1 GGAATTGGTA
12117 ATGGTTCAAA
Statistics
Matches: 41, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
10 23 0.56
11 12 0.29
12 6 0.15
ACGTcount: A:0.29, C:0.03, G:0.33, T:0.35
Consensus pattern (11 bp):
GGAATTGGTAT
Found at i:14545 original size:48 final size:48
Alignment explanation
Indices: 14444--14549 Score: 128
Period size: 48 Copynumber: 2.2 Consensus size: 48
14434 GAGTGTCATG
*
14444 GAAAAAGAAATTGAGATTGAAAAAGGATGTGAAAAAGAGAAAGAAATC
1 GAAAAAGAAATTGAGATTGAAAAAAGATGTGAAAAAGAGAAAGAAATC
* * *
14492 AAAAAAGAAATTGAGATTGAACAAAAG-TGTGAGGAAAA-AGAGA-AAATT
1 GAAAAAGAAATTGAGATTGAA-AAAAGATGTGA--AAAAGAGAAAGAAATC
14540 GAAAAAGAAA
1 GAAAAAGAAA
14550 GAAAAGACAA
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
48 38 0.76
49 8 0.16
50 4 0.08
ACGTcount: A:0.60, C:0.02, G:0.24, T:0.14
Consensus pattern (48 bp):
GAAAAAGAAATTGAGATTGAAAAAAGATGTGAAAAAGAGAAAGAAATC
Found at i:24034 original size:4 final size:4
Alignment explanation
Indices: 24025--24055 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
24015 TGTTTTTATT
*
24025 TTTA TTTA TTTA TTTA TTTA TTTA CTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
24056 TAAATTTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:29096 original size:20 final size:20
Alignment explanation
Indices: 29040--29096 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 20
29030 AGCTCCGTTT
* *
29040 AGCTCATTTCCAGCTCACTCG
1 AGCTCAATT-CAGCTCACTCA
* * *
29061 AGCTCAAGTCAACTCATTCA
1 AGCTCAATTCAGCTCACTCA
29081 AGCTCAATTCAGCTCA
1 AGCTCAATTCAGCTCA
29097 ATCTTAACCC
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
20 22 0.76
21 7 0.24
ACGTcount: A:0.28, C:0.33, G:0.12, T:0.26
Consensus pattern (20 bp):
AGCTCAATTCAGCTCACTCA
Found at i:34754 original size:40 final size:40
Alignment explanation
Indices: 34699--35286 Score: 1005
Period size: 40 Copynumber: 14.7 Consensus size: 40
34689 GAGCATTGGA
34699 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
34739 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
34779 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
34819 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
34859 ATATGTCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
34899 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
34939 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* * *
34979 ATATGTCCGGGCTATGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
35019 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
35059 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* * *
35099 ATATGTCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
35139 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* * *
35179 ATATGTCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
35219 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
35259 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
35287 AGGTGTTTGC
Statistics
Matches: 517, Mismatches: 31, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 517 1.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:42492 original size:40 final size:40
Alignment explanation
Indices: 42437--43011 Score: 906
Period size: 40 Copynumber: 14.7 Consensus size: 40
42427 GAGCATTGGA
42437 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
42477 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
42517 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
42557 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
42597 ATATGTCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
42637 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
42677 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
42717 ATATGTCCGGGCT-AGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
42756 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
42796 AT-TA----GGCTAAG-CCCG-AGGC--TTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* * *
42827 ATATGTCCGGGCTATGA-CCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
42866 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
42906 ATATGTCCGGGCTATGACCCGAAGGCAATTATGCGAG-TG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
42945 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
42985 ATATGTCC-GGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
43012 AGGTGTTTGC
Statistics
Matches: 496, Mismatches: 27, Indels: 25
0.91 0.05 0.05
Matches are distributed among these distances:
31 13 0.03
32 1 0.00
33 4 0.01
34 4 0.01
35 7 0.01
36 9 0.02
37 4 0.01
39 119 0.24
40 335 0.68
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Done.