Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold810

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11512
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28


Found at i:5524 original size:12 final size:12

Alignment explanation


    Indices: 5504--5545  Score: 54
    Period size: 12  Copynumber: 3.8  Consensus size: 12

       5494 GGAAAAGAAA

                        
       5504 AAAAACAAAATC
          1 AAAAACAAAATC

                *       
       5516 AAAATCAAAATC
          1 AAAAACAAAATC

                        
       5528 AAAAA-AAAAT-
          1 AAAAACAAAATC

                     
       5538 -AAAACAAA
          1 AAAAACAAA

       5546 GAGAAATCAA


Statistics
Matches: 27,  Mismatches: 2, Indels: 4
        0.82            0.06        0.12

Matches are distributed among these distances:
   9    4  0.15
  10    3  0.11
  11    5  0.19
  12   15  0.56

ACGTcount: A:0.79, C:0.12, G:0.00, T:0.10


Consensus pattern (12 bp):   
AAAAACAAAATC
Done.