Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1510
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 45002
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34
Found at i:3748 original size:51 final size:52
Alignment explanation
Indices: 3672--3782 Score: 170
Period size: 51 Copynumber: 2.1 Consensus size: 52
3662 TACTTCTGAT
*
3672 CAAGTGAAAAGTGATAAGTGGTAGCTT-AGCTACACTTATCTGATCAAGTGA
1 CAAGTGAAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGA
* * *
3723 CAAGTGGAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGA
1 CAAGTGAAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGA
3775 CAAAGTGA
1 C-AAGTGA
3783 TAAGCTGGCT
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
51 25 0.47
52 23 0.43
53 5 0.09
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (52 bp):
CAAGTGAAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGA
Found at i:3780 original size:46 final size:43
Alignment explanation
Indices: 3730--3935 Score: 167
Period size: 37 Copynumber: 5.3 Consensus size: 43
3720 TGACAAGTGG
* *
3730 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGA-AGC-T-GGCTACACTTATCTGATCAAGAGAC
3776 AAAGTG---A-T-AAGCTGGCTACACTTATCTGATCAAGAGAC
1 AAAGTGATAAGTGAAGCTGGCTACACTTATCTGATCAAGAGAC
3814 AAAGTG---A-T-AAG-TGGCTACACTTATCTGATCAAGA-AC
1 AAAGTGATAAGTGAAGCTGGCTACACTTATCTGATCAAGAGAC
*
3850 AAAGTG---A-T-AAG-TGGCTACACTTATCTGATCAAGAAAC
1 AAAGTGATAAGTGAAGCTGGCTACACTTATCTGATCAAGAGAC
*
3887 AAAGTGAT-A--G--G-TGGCTACACTTATCTGATC-AGGGAC
1 AAAGTGATAAGTGAAGCTGGCTACACTTATCTGATCAAGAGAC
3923 -AAGTGATAAGTGA
1 AAAGTGATAAGTGA
3936 TCATACGTAA
Statistics
Matches: 148, Mismatches: 4, Indels: 23
0.85 0.02 0.13
Matches are distributed among these distances:
35 7 0.05
36 41 0.28
37 51 0.34
38 35 0.24
39 2 0.01
40 3 0.02
41 1 0.01
42 1 0.01
43 1 0.01
46 6 0.04
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (43 bp):
AAAGTGATAAGTGAAGCTGGCTACACTTATCTGATCAAGAGAC
Found at i:3838 original size:37 final size:37
Alignment explanation
Indices: 3751--3934 Score: 293
Period size: 37 Copynumber: 5.0 Consensus size: 37
3741 TGATAGCTTC
* *
3751 GGCTATACTTATCTGATCAAGTGACAAAGTGATAAGCT
1 GGCTACACTTATCTGATCAAGAGACAAAGTGATAAG-T
3789 GGCTACACTTATCTGATCAAGAGACAAAGTGATAAGT
1 GGCTACACTTATCTGATCAAGAGACAAAGTGATAAGT
3826 GGCTACACTTATCTGATCAAGA-ACAAAGTGATAAGT
1 GGCTACACTTATCTGATCAAGAGACAAAGTGATAAGT
* *
3862 GGCTACACTTATCTGATCAAGAAACAAAGTGATAGGT
1 GGCTACACTTATCTGATCAAGAGACAAAGTGATAAGT
*
3899 GGCTACACTTATCTGATC-AGGGAC-AAGTGATAAGT
1 GGCTACACTTATCTGATCAAGAGACAAAGTGATAAGT
3934 G
1 G
3935 ATCATACGTA
Statistics
Matches: 139, Mismatches: 6, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
35 11 0.08
36 40 0.29
37 54 0.39
38 34 0.24
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (37 bp):
GGCTACACTTATCTGATCAAGAGACAAAGTGATAAGT
Found at i:3880 original size:73 final size:73
Alignment explanation
Indices: 3751--3934 Score: 298
Period size: 73 Copynumber: 2.5 Consensus size: 73
3741 TGATAGCTTC
* *
3751 GGCTATACTTATCTGATCAAGTGACAAAGTGATAAGCTGGCTACACTTATCTGATCAAGAGACAA
1 GGCTACACTTATCTGATCAAG-GACAAAGTGATAAG-TGGCTACACTTATCTGATCAAGAAACAA
3816 AGTGATAAGT
64 AGTGATAAGT
*
3826 GGCTACACTTATCTGATCAAGAACAAAGTGATAAGTGGCTACACTTATCTGATCAAGAAACAAAG
1 GGCTACACTTATCTGATCAAGGACAAAGTGATAAGTGGCTACACTTATCTGATCAAGAAACAAAG
*
3891 TGATAGGT
66 TGATAAGT
*
3899 GGCTACACTTATCTGATCAGGGAC-AAGTGATAAGTG
1 GGCTACACTTATCTGATCAAGGACAAAGTGATAAGTG
3935 ATCATACGTA
Statistics
Matches: 103, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
72 12 0.12
73 58 0.56
74 13 0.13
75 20 0.19
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (73 bp):
GGCTACACTTATCTGATCAAGGACAAAGTGATAAGTGGCTACACTTATCTGATCAAGAAACAAAG
TGATAAGT
Found at i:5253 original size:49 final size:49
Alignment explanation
Indices: 5192--5383 Score: 296
Period size: 49 Copynumber: 3.9 Consensus size: 49
5182 ATGTGAACAT
5192 GTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
1 GTGA-TATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
*
5242 GTGATATGTGATTCTGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
1 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
* * *
5291 GTGATGTGTGATTTCGTGTAAGACCATAGCTGGG-TATGGCATCGGTAT
1 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
* * * *
5339 GTGATTTGTGATTACGTGTAAGACCATAGTTGGACTATGGCATCG
1 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCG
5384 AGAAAACGAA
Statistics
Matches: 132, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
48 43 0.33
49 85 0.64
50 4 0.03
ACGTcount: A:0.23, C:0.14, G:0.31, T:0.32
Consensus pattern (49 bp):
GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
Found at i:5358 original size:97 final size:98
Alignment explanation
Indices: 5199--5383 Score: 302
Period size: 97 Copynumber: 1.9 Consensus size: 98
5189 CATGTGATTA
5199 TGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATGTGATTCTGTGTAAG
1 TGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATGTGATTCTGTGTAAG
*
5264 ACCATAGCTGGGCTATGGCATCGGTAAGTGATG
66 ACCATAGCTGGACTATGGCATCGGTAAGTGATG
* * *
5297 TGTGATTTCGTGTAAGACCATAGCTGGG-TATGGCATCGGTATGTGATTTGTGATTAC-GTGTAA
1 TGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATGTGATT-CTGTGTAA
*
5360 GACCATAGTTGGACTATGGCATCG
65 GACCATAGCTGGACTATGGCATCG
5384 AGAAAACGAA
Statistics
Matches: 81, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
97 53 0.65
98 28 0.35
ACGTcount: A:0.23, C:0.15, G:0.31, T:0.31
Consensus pattern (98 bp):
TGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATGTGATTCTGTGTAAG
ACCATAGCTGGACTATGGCATCGGTAAGTGATG
Found at i:8594 original size:52 final size:52
Alignment explanation
Indices: 8523--8622 Score: 146
Period size: 52 Copynumber: 1.9 Consensus size: 52
8513 ATCAAGTGAC
** * *
8523 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTAATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTGG
* *
8575 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGAGACAA
1 AAAGTGATAAGTAATAGCTTCAGCTACACTTATCTGATCAAGAGACAA
8623 AGTGATAAGT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 42 1.00
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (52 bp):
AAAGTGATAAGTAATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTGG
Found at i:8646 original size:37 final size:37
Alignment explanation
Indices: 8596--8742 Score: 235
Period size: 37 Copynumber: 4.0 Consensus size: 37
8586 TAATAGCTTC
* *
8596 GGCTATACTTATCTGATCAAGAGACAAAGTGATAAGT
1 GGCTACACTTATCTGATCAAGAAACAAAGTGATAAGT
8633 GGCTACACTTATCTGATCAAGAAACAAAGTGATAAGT
1 GGCTACACTTATCTGATCAAGAAACAAAGTGATAAGT
*
8670 GGCTACACTTATCTGATCAAGAAACAAAGTGATAGGT
1 GGCTACACTTATCTGATCAAGAAACAAAGTGATAAGT
**
8707 GGCTACACTTATCTGATC-AGGGAC-AAGTGATAAGT
1 GGCTACACTTATCTGATCAAGAAACAAAGTGATAAGT
8742 G
1 G
8743 ATCATACGTA
Statistics
Matches: 104, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 89 0.86
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GGCTACACTTATCTGATCAAGAAACAAAGTGATAAGT
Found at i:11613 original size:27 final size:27
Alignment explanation
Indices: 11583--11634 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
11573 TGCCGCTTCT
11583 GCCAGCTCCTCCACCAGTGCCGCCTGC
1 GCCAGCTCCTCCACCAGTGCCGCCTGC
*
11610 GCCAGCTCCTCCACCAGTGCTGCCT
1 GCCAGCTCCTCCACCAGTGCCGCCT
11635 CTTCCCTAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.12, C:0.50, G:0.21, T:0.17
Consensus pattern (27 bp):
GCCAGCTCCTCCACCAGTGCCGCCTGC
Found at i:12550 original size:15 final size:15
Alignment explanation
Indices: 12526--12560 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
12516 TGTTGCAGAA
12526 CAAA-CCAACCCAAC
1 CAAACCCAACCCAAC
*
12540 CCAACCCAACCCAAC
1 CAAACCCAACCCAAC
12555 CAAACC
1 CAAACC
12561 AAAACAATAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
14 3 0.17
15 15 0.83
ACGTcount: A:0.46, C:0.54, G:0.00, T:0.00
Consensus pattern (15 bp):
CAAACCCAACCCAAC
Found at i:12563 original size:5 final size:5
Alignment explanation
Indices: 12530--12560 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
12520 GCAGAACAAA
*
12530 CCAAC CCAAC CCAAC CCAAC CCAAC CAAAC C
1 CCAAC CCAAC CCAAC CCAAC CCAAC CCAAC C
12561 AAAACAATAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.42, C:0.58, G:0.00, T:0.00
Consensus pattern (5 bp):
CCAAC
Found at i:12956 original size:3 final size:3
Alignment explanation
Indices: 12942--12973 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
12932 AAAGAAAACA
*
12942 CAG CAA CAG CAG CAG CAG CAG CAG CAG CAG CA
1 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CA
12974 AGAAAAGAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.38, C:0.34, G:0.28, T:0.00
Consensus pattern (3 bp):
CAG
Found at i:12990 original size:9 final size:8
Alignment explanation
Indices: 12973--13006 Score: 50
Period size: 9 Copynumber: 4.0 Consensus size: 8
12963 CAGCAGCAGC
12973 AAGAAAAG
1 AAGAAAAG
12981 AAGAAGAAG
1 AAGAA-AAG
12990 AAGAAAAAG
1 AAG-AAAAG
12999 AAGAAAAG
1 AAGAAAAG
13007 TAGTAAACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
8 10 0.42
9 12 0.50
10 2 0.08
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (8 bp):
AAGAAAAG
Found at i:17102 original size:20 final size:20
Alignment explanation
Indices: 17058--17109 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
17048 TTATTTTTAA
* *
17058 TATTTTTAAT-TTAAATTTT
1 TATTTTTAATATAAAATGTT
17077 TCATTTTTAATATAAAATGTT
1 T-ATTTTTAATATAAAATGTT
*
17098 TATTTTTTATAT
1 TATTTTTAATAT
17110 CATAAAAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 1 0.04
20 19 0.68
21 8 0.29
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (20 bp):
TATTTTTAATATAAAATGTT
Found at i:19564 original size:23 final size:23
Alignment explanation
Indices: 19537--19675 Score: 108
Period size: 23 Copynumber: 6.1 Consensus size: 23
19527 GGAACAAGAT
19537 ATTATCTCCTGAGGGATTAGGAA
1 ATTATCTCCTGAGGGATTAGGAA
19560 ATTATC-CCTCGAGGGATTAGGAA
1 ATTATCTCCT-GAGGGATTAGGAA
* * *
19583 ATTATCT-ATGAAGGAATAAGG-A
1 ATTATCTCCTG-AGGGATTAGGAA
* * * *
19605 ATGA-CCCCTTAAAGGATTAGGAA
1 ATTATCTCC-TGAGGGATTAGGAA
*
19628 ATGATCTCCTGAGGGATTACGG-A
1 ATTATCTCCTGAGGGATTA-GGAA
* * *
19651 TTTATCACCCGAGGGATTAGGAA
1 ATTATCTCCTGAGGGATTAGGAA
19674 AT
1 AT
19676 GATCCCTTGA
Statistics
Matches: 89, Mismatches: 18, Indels: 18
0.71 0.14 0.14
Matches are distributed among these distances:
21 1 0.01
22 17 0.19
23 66 0.74
24 5 0.06
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (23 bp):
ATTATCTCCTGAGGGATTAGGAA
Found at i:19605 original size:46 final size:46
Alignment explanation
Indices: 19559--19689 Score: 122
Period size: 46 Copynumber: 2.9 Consensus size: 46
19549 GGGATTAGGA
*
19559 AATTATCCCTCGAGGGATTAGGAAATTATCT-ATGAAGGAATAAGG
1 AATTATCCCTCGAGGGATTAGGAAATGATCTCATGAAGGAATAAGG
* * ** * * * * *
19604 AATGACCCCTTAAAGGATTAGGAAATGATCTCCTGAGGGATTACGG
1 AATTATCCCTCGAGGGATTAGGAAATGATCTCATGAAGGAATAAGG
* * *
19650 ATTTATCACC-CGAGGGATTAGGAAATGATCCCTTGAAGGA
1 AATTATC-CCTCGAGGGATTAGGAAATGATCTCATGAAGGA
19690 TTGAAAATAT
Statistics
Matches: 65, Mismatches: 19, Indels: 3
0.75 0.22 0.03
Matches are distributed among these distances:
45 25 0.38
46 38 0.58
47 2 0.03
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.25
Consensus pattern (46 bp):
AATTATCCCTCGAGGGATTAGGAAATGATCTCATGAAGGAATAAGG
Found at i:19690 original size:23 final size:23
Alignment explanation
Indices: 19550--19691 Score: 89
Period size: 23 Copynumber: 6.2 Consensus size: 23
19540 ATCTCCTGAG
* * *
19550 GGATTAGGAAATTATCCCTCGAG
1 GGATTAGGAAATGATCCCTTGAA
*
19573 GGATTAGGAAATTAT--CTATGAA
1 GGATTAGGAAATGATCCCT-TGAA
* * *
19595 GGAATAAGG-AATGACCCCTTAAA
1 GG-ATTAGGAAATGATCCCTTGAA
*
19618 GGATTAGGAAATGATCTCC-TGAG
1 GGATTAGGAAATGATC-CCTTGAA
* * * *
19641 GGATTACGG-ATTTATCACC-CGAG
1 GGATTA-GGAAATGATC-CCTTGAA
19664 GGATTAGGAAATGATCCCTTGAA
1 GGATTAGGAAATGATCCCTTGAA
19687 GGATT
1 GGATT
19692 GAAAATATTT
Statistics
Matches: 92, Mismatches: 18, Indels: 18
0.72 0.14 0.14
Matches are distributed among these distances:
21 2 0.02
22 17 0.18
23 67 0.73
24 6 0.07
ACGTcount: A:0.34, C:0.14, G:0.26, T:0.26
Consensus pattern (23 bp):
GGATTAGGAAATGATCCCTTGAA
Found at i:30684 original size:18 final size:17
Alignment explanation
Indices: 30651--30689 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
30641 TTGTATAAAT
30651 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
30669 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
30686 TGTG
1 TGTG
30690 GAAGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:30807 original size:8 final size:8
Alignment explanation
Indices: 30794--30822 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
30784 CACTAGAGAC
30794 CAGTGTTA
1 CAGTGTTA
30802 CAGTGTTA
1 CAGTGTTA
30810 CAGTGTTA
1 CAGTGTTA
30818 CAGTG
1 CAGTG
30823 AGTCCCGGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (8 bp):
CAGTGTTA
Found at i:30936 original size:23 final size:23
Alignment explanation
Indices: 30909--30984 Score: 143
Period size: 23 Copynumber: 3.3 Consensus size: 23
30899 AGTGTTATTG
30909 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
30932 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
30955 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
30978 ATCAGTG
1 ATCAGTG
30985 TGGCACTTAT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:38012 original size:18 final size:17
Alignment explanation
Indices: 37979--38017 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
37969 TTGTATAAAT
37979 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
37997 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
38014 TGTG
1 TGTG
38018 GAAGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:38135 original size:8 final size:8
Alignment explanation
Indices: 38122--38150 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
38112 CACTAGAGAC
38122 CAGTGTTA
1 CAGTGTTA
38130 CAGTGTTA
1 CAGTGTTA
38138 CAGTGTTA
1 CAGTGTTA
38146 CAGTG
1 CAGTG
38151 AGTCCCGGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (8 bp):
CAGTGTTA
Found at i:38264 original size:23 final size:23
Alignment explanation
Indices: 38237--38312 Score: 143
Period size: 23 Copynumber: 3.3 Consensus size: 23
38227 AGTGTTATTG
38237 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
38260 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
38283 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
38306 ATCAGTG
1 ATCAGTG
38313 TGGCACTTAT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Done.