Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 100 of 352
Found at i:31652838 original size:12 final size:12
Alignment explanation
Indices: 31652821--31652847 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
31652811 TATGAGTGGG
31652821 ATGGCATATATT
1 ATGGCATATATT
31652833 ATGGCATATATT
1 ATGGCATATATT
31652845 ATG
1 ATG
31652848 TATATGTGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.07, G:0.19, T:0.41
Consensus pattern (12 bp):
ATGGCATATATT
Found at i:31654265 original size:23 final size:23
Alignment explanation
Indices: 31654239--31654282 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
31654229 CTAGCTATCA
31654239 TAGCATTTTTCATCAATGGTCCG
1 TAGCATTTTTCATCAATGGTCCG
*
31654262 TAGCATTTTTCATCTATGGTC
1 TAGCATTTTTCATCAATGGTC
31654283 TTACATCGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.20, C:0.20, G:0.16, T:0.43
Consensus pattern (23 bp):
TAGCATTTTTCATCAATGGTCCG
Found at i:31667629 original size:94 final size:91
Alignment explanation
Indices: 31667389--31667655 Score: 254
Period size: 94 Copynumber: 2.9 Consensus size: 91
31667379 GGGGTCAGGT
* ** *
31667389 GCCGATGCCATGTCCTAGACATGGTCTTACACAAGTTCTAGCATATCTGTGCCGATGCCATGTCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGTTCTA-CA-ATGTG-GCCGATG-CATGTCC
* **
31667454 CAGGCATGGTCTTACACTGACACATCTTGTA
62 CAGACAT-GTCTTACACTGACACATCTAATA
* * * * * *
31667485 GCCGATG-CATGTCCCAAACA-CGTCTTACACTGGCTTATGTC-TTGAGGCCGATGCATGTCCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGG-TTCT-ACAATGTGGCCGATGCATGTCCCA
*
31667547 GACATGTCTTACACTGGCACTCATCTCAATA
64 GACATGTCTTACACT-G-ACACATCT-AATA
* * *
31667578 -CGGATGCCATGTCCCAGACATGGTCTTACACTGGATCTCACAATGTGGCCGATTCATGTCCCAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGTTCT-ACAATGTGGCCGATGCATGTCCCAG
31667642 ACATGTCTTACACT
65 ACATGTCTTACACT
31667656 AGCTCACATA
Statistics
Matches: 139, Mismatches: 24, Indels: 18
0.77 0.13 0.10
Matches are distributed among these distances:
90 10 0.07
91 14 0.10
92 19 0.14
93 19 0.14
94 55 0.40
95 15 0.11
96 7 0.05
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.27
Consensus pattern (91 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGTTCTACAATGTGGCCGATGCATGTCCCAGA
CATGTCTTACACTGACACATCTAATA
Found at i:31667636 original size:47 final size:47
Alignment explanation
Indices: 31667530--31667655 Score: 143
Period size: 47 Copynumber: 2.7 Consensus size: 47
31667520 TATGTCTTGA
* *
31667530 GGCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCAAT
1 GGCCGATCCATGTCCCAGACATGTCTTACACTGGCACTCATCACAAT
* *
31667577 -ACGGATGCCATGTCCCAGACATGGTCTTACACTGG-A-TC-TCACAATGT
1 GGCCGAT-CCATGTCCCAGACAT-GTCTTACACTGGCACTCATCACAA--T
*
31667624 GGCCGATTCATGTCCCAGACATGTCTTACACT
1 GGCCGATCCATGTCCCAGACATGTCTTACACT
31667656 AGCTCACATA
Statistics
Matches: 67, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
45 5 0.07
46 16 0.24
47 30 0.45
48 16 0.24
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (47 bp):
GGCCGATCCATGTCCCAGACATGTCTTACACTGGCACTCATCACAAT
Found at i:31670732 original size:185 final size:185
Alignment explanation
Indices: 31670406--31670780 Score: 669
Period size: 185 Copynumber: 2.0 Consensus size: 185
31670396 AAACCCTGAT
*
31670406 CTCACATTCTGTCTGGCTTGGTCTCTCCTCTGAGTCCTCGAACAATCTCTCAAATCTTGCGAACA
1 CTCACATTCTGTCTGGCTTGGTCTCTCCTCTGAGTCCTCGAACAATCTCTCAAATCTTGCAAACA
* *
31670471 CCAGACAAACTGCTATAAATTCAAATGAGCTTAATGAGTTTCTCCACTAGGTCATACATAAAAAA
66 CCAGACAAACTGCTATAAATTCAAATGAACTTAATGAGTTTCTCCACTAGGTCACACATAAAAAA
31670536 ACCCAAACTCACGAGGGTAAGAAATGTAAAATAAAATAAATATAAATATTCCTTG
131 ACCCAAACTCACGAGGGTAAGAAATGTAAAATAAAATAAATATAAATATTCCTTG
31670591 CTCACATTCTGTCTGGCTTGGTCTCTCCTCTGAGTCCTCGAACAATCTCTCAAATCTTGCAAACA
1 CTCACATTCTGTCTGGCTTGGTCTCTCCTCTGAGTCCTCGAACAATCTCTCAAATCTTGCAAACA
* * * *
31670656 TCAGACAAACTGCTATAAGTTCAAATGAACTTAATGAGTTTCTCCATTAGGTCACACATAAATAA
66 CCAGACAAACTGCTATAAATTCAAATGAACTTAATGAGTTTCTCCACTAGGTCACACATAAAAAA
* *
31670721 ACCCGAACTCACGAGGGTAAGAAATGTAAAATAAAATAAATATAAATATTGCTTG
131 ACCCAAACTCACGAGGGTAAGAAATGTAAAATAAAATAAATATAAATATTCCTTG
31670776 CTCAC
1 CTCAC
31670781 TTAAGGTGAG
Statistics
Matches: 181, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
185 181 1.00
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.28
Consensus pattern (185 bp):
CTCACATTCTGTCTGGCTTGGTCTCTCCTCTGAGTCCTCGAACAATCTCTCAAATCTTGCAAACA
CCAGACAAACTGCTATAAATTCAAATGAACTTAATGAGTTTCTCCACTAGGTCACACATAAAAAA
ACCCAAACTCACGAGGGTAAGAAATGTAAAATAAAATAAATATAAATATTCCTTG
Found at i:31679653 original size:39 final size:39
Alignment explanation
Indices: 31679627--31679784 Score: 262
Period size: 39 Copynumber: 4.1 Consensus size: 39
31679617 GTCCAGCACG
* *
31679627 TAGCCTACGGACCTAAAGTCCGGATATAATTCTCGCATA
1 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCATA
* *
31679666 TAGCCTGCGGACATGAAGTCTGGATATAATTCTCGCATA
1 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCATA
*
31679705 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCTTA
1 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCATA
*
31679744 TAGCCTGTGGACCTGAAGTCCGGATATAATTCTCGCATA
1 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCATA
31679783 TA
1 TA
31679785 TATATTCACA
Statistics
Matches: 110, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 110 1.00
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (39 bp):
TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCATA
Found at i:31688063 original size:39 final size:39
Alignment explanation
Indices: 31688020--31688177 Score: 271
Period size: 39 Copynumber: 4.1 Consensus size: 39
31688010 GTCTAGCACG
*
31688020 TAGCCTACGGACCTAAAGTCCGGATATAATTCTCGCATA
1 TAGCCTACGGACCTGAAGTCCGGATATAATTCTCGCATA
* *
31688059 TAGCCTGCGGACATGAAGTCCGGATATAATTCTCGCATA
1 TAGCCTACGGACCTGAAGTCCGGATATAATTCTCGCATA
* *
31688098 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCTTA
1 TAGCCTACGGACCTGAAGTCCGGATATAATTCTCGCATA
31688137 TAGCCTACGGACCTGAAGTCCGGATATAATTCTCGCATA
1 TAGCCTACGGACCTGAAGTCCGGATATAATTCTCGCATA
31688176 TA
1 TA
31688178 TATATTCACA
Statistics
Matches: 112, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 112 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.27
Consensus pattern (39 bp):
TAGCCTACGGACCTGAAGTCCGGATATAATTCTCGCATA
Found at i:31696477 original size:29 final size:29
Alignment explanation
Indices: 31696420--31696536 Score: 108
Period size: 29 Copynumber: 4.3 Consensus size: 29
31696410 CACAAAAACT
* * *
31696420 TTCCTTATAATAGAGATCACCATAGAGGC
1 TTCCTTATAATAGAGATCGCCACAAAGGC
31696449 TTCCTTATAATAGAGATCGCCACAAAGGC
1 TTCCTTATAATAGAGATCGCCACAAAGGC
**
31696478 TT--TCGT-A-AG-GATCGCCACAAAGGC
1 TTCCTTATAATAGAGATCGCCACAAAGGC
*
31696502 TTCCTT-T--TAGAGATAGCCACAAAGGC
1 TTCCTTATAATAGAGATCGCCACAAAGGC
31696528 -TCACTTATA
1 TTC-CTTATA
31696537 CGAAAATTGG
Statistics
Matches: 74, Mismatches: 7, Indels: 15
0.77 0.07 0.16
Matches are distributed among these distances:
24 17 0.23
25 7 0.09
26 19 0.26
27 3 0.04
29 28 0.38
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.26
Consensus pattern (29 bp):
TTCCTTATAATAGAGATCGCCACAAAGGC
Found at i:31698133 original size:7 final size:7
Alignment explanation
Indices: 31698121--31698162 Score: 57
Period size: 7 Copynumber: 6.0 Consensus size: 7
31698111 TTTAAAAAAC
31698121 AATTGAG
1 AATTGAG
31698128 AATTGAG
1 AATTGAG
31698135 AATTGAG
1 AATTGAG
*
31698142 AACTGAG
1 AATTGAG
*
31698149 AACTGAG
1 AATTGAG
*
31698156 GATTGAG
1 AATTGAG
31698163 TTGAAAAGAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.40, C:0.05, G:0.31, T:0.24
Consensus pattern (7 bp):
AATTGAG
Found at i:31699113 original size:9 final size:9
Alignment explanation
Indices: 31699101--31699131 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
31699091 CTTTCCTAAC
*
31699101 TTTTAAGAA
1 TTTTATGAA
31699110 TTTTATGAA
1 TTTTATGAA
31699119 TTTTATGAA
1 TTTTATGAA
31699128 TTTT
1 TTTT
31699132 TTTAGCTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.32, C:0.00, G:0.10, T:0.58
Consensus pattern (9 bp):
TTTTATGAA
Found at i:31699954 original size:49 final size:51
Alignment explanation
Indices: 31699864--31699969 Score: 198
Period size: 49 Copynumber: 2.1 Consensus size: 51
31699854 AACATATTTT
31699864 TAATTAATATGTAAGTTATTTTTTTTTGCTATTACAATTACAATCACATTG
1 TAATTAATATGTAAGTTATTTTTTTTTGCTATTACAATTACAATCACATTG
31699915 TAATTAATATGTAAG-T-TTTTTTTTTGCTATTACAATTACAATCACATTG
1 TAATTAATATGTAAGTTATTTTTTTTTGCTATTACAATTACAATCACATTG
31699964 TAATTA
1 TAATTA
31699970 CAAAAAGTAT
Statistics
Matches: 55, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
49 39 0.71
50 1 0.02
51 15 0.27
ACGTcount: A:0.34, C:0.09, G:0.08, T:0.49
Consensus pattern (51 bp):
TAATTAATATGTAAGTTATTTTTTTTTGCTATTACAATTACAATCACATTG
Found at i:31713485 original size:40 final size:40
Alignment explanation
Indices: 31713421--31713642 Score: 331
Period size: 40 Copynumber: 5.6 Consensus size: 40
31713411 ATTCGGATTG
*
31713421 ATAACCGGGCTAAGTCCCGGAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
31713461 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
31713501 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
31713541 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
31713581 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* **
31713621 ATATCC-GGCTAAAACCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
31713643 TACTTGGTTT
Statistics
Matches: 168, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 16 0.10
40 152 0.90
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.22
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:31719577 original size:39 final size:40
Alignment explanation
Indices: 31719482--31719660 Score: 206
Period size: 39 Copynumber: 4.5 Consensus size: 40
31719472 ACCCAAGTAT
* ** * *
31719482 CTTCGGGATTTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
31719520 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
31719560 CTTCGGGACTTAG-CCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
31719599 CTTC-GGATCTTAGTCC-GATATAGTCACTTAGCACAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCACAAATGC
31719639 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
31719661 CATTCGAATA
Statistics
Matches: 119, Mismatches: 15, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
38 14 0.12
39 57 0.48
40 40 0.34
41 8 0.07
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:31719619 original size:78 final size:79
Alignment explanation
Indices: 31719482--31719660 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 79
31719472 ACCCAAGTAT
* * * *
31719482 CTTCGGGATTTAGCCGGATATAACCACTCGCACAAGGCCTTCGGGTCTTAGCCCGGATATGGTCA
1 CTTCGGGACTTAGCCGGATATAACCACTAGCACAAGGCCTTCGGATCTTAGCCCGGATATAGTCA
* *
31719547 C-TAGCATAAATGC
66 CTTAGCACAAAAGC
** * * *
31719560 CTTCGGGACTTAGCCGGATATAGTCGCTAGCACAAATGCCTTCGGATCTTAGTCC-GATATAGTC
1 CTTCGGGACTTAGCCGGATATAACCACTAGCAC-AAGGCCTTCGGATCTTAGCCCGGATATAGTC
31719624 ACTTAGCACAAAAGC
65 ACTTAGCACAAAAGC
31719639 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAG-CCGGATAT
31719661 CATTCGAATA
Statistics
Matches: 87, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
78 38 0.44
79 41 0.47
80 8 0.09
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (79 bp):
CTTCGGGACTTAGCCGGATATAACCACTAGCACAAGGCCTTCGGATCTTAGCCCGGATATAGTCA
CTTAGCACAAAAGC
Found at i:31727598 original size:41 final size:40
Alignment explanation
Indices: 31727435--31727615 Score: 224
Period size: 40 Copynumber: 4.5 Consensus size: 40
31727425 ACCCAAGTAT
* ** * *
31727435 CTTCGGGATTTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
31727473 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
31727513 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
31727553 CTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCACAAATGC
31727594 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
31727616 CATTCGAATA
Statistics
Matches: 122, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 11 0.09
39 18 0.15
40 62 0.51
41 28 0.23
42 3 0.02
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:31727614 original size:81 final size:79
Alignment explanation
Indices: 31727435--31727615 Score: 238
Period size: 81 Copynumber: 2.3 Consensus size: 79
31727425 ACCCAAGTAT
* * * *
31727435 CTTCGGGATTTAG-CCGGATATAACCACTCGCACAAGGCCTTCGGGTCTTAGCCCGGATATGGTC
1 CTTCGGGACTTAGCCCGGATATAACCACTAGCACAAGGCCTTCGGATCTTAGCCCGGATATAGTC
* *
31727499 ACTAGCATAAATGC
66 ACTAGCACAAAAGC
** * * *
31727513 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGCCTTCGGATCTTAGTCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAACCACTAGCAC-AAGGCCTTCGGATCTTAGCCCGGATATAGT
31727578 CACTTAGCACAAAAGC
65 CAC-TAGCACAAAAGC
31727594 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
31727616 CATTCGAATA
Statistics
Matches: 89, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
78 12 0.13
79 16 0.18
80 29 0.33
81 32 0.36
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.25
Consensus pattern (79 bp):
CTTCGGGACTTAGCCCGGATATAACCACTAGCACAAGGCCTTCGGATCTTAGCCCGGATATAGTC
ACTAGCACAAAAGC
Found at i:31739956 original size:35 final size:36
Alignment explanation
Indices: 31739916--31740038 Score: 116
Period size: 38 Copynumber: 3.4 Consensus size: 36
31739906 ACTACTTCCT
*
31739916 CAAATGCCTTCGGGA-TA-CGGTTACAGTAACTCGCA
1 CAAATGCCTTCGGGACTACCGGTT-CAATAACTCGCA
31739951 CAAATGCCTT--GGACTTAGCCCGGTTCAATAACTCGCA
1 CAAATGCCTTCGGGAC-TA--CCGGTTCAATAACTCGCA
31739988 C-AATGCCTTCGGGACTTAGCCCGGTAT-AATAACTCGCA
1 CAAATGCCTTCGGGAC-TA--CCGGT-TCAATAACTCGCA
31740026 C-AATGCCTTCGGG
1 CAAATGCCTTCGGG
31740039 TTAACCCGGA
Statistics
Matches: 79, Mismatches: 1, Indels: 13
0.85 0.01 0.14
Matches are distributed among these distances:
33 3 0.04
35 12 0.15
36 8 0.10
37 12 0.15
38 43 0.54
39 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (36 bp):
CAAATGCCTTCGGGACTACCGGTTCAATAACTCGCA
Found at i:31740127 original size:40 final size:39
Alignment explanation
Indices: 31739943--31740170 Score: 215
Period size: 38 Copynumber: 5.9 Consensus size: 39
31739933 CGGTTACAGT
**
31739943 AACTCGCACAAATGCCTT-GGACTTAGCCCGG-T-TCAAT
1 AACTCGCACAAATGCCTTCGGACTTAGCCCGGATAT-AGC
**
31739980 AACTCGCAC-AATGCCTTCGGGACTTAGCCCGG-TATAAT
1 AACTCGCACAAATGCCTTC-GGACTTAGCCCGGATATAGC
* *
31740018 AACTCGCAC-AATGCCTTCGG-GTTAACCCGGA-ATTAGTC
1 AACTCGCACAAATGCCTTCGGACTTAGCCCGGATA-TAG-C
* *
31740056 -ACTAGCACAAATGCCTTCGGTCTTAGCCCGGATATAGC
1 AACTCGCACAAATGCCTTCGGACTTAGCCCGGATATAGC
* *
31740094 AACTCGCACGAATGCCTTCGGATCTTAGTCCGGATATAGTC
1 AACTCGCACAAATGCCTTCGGA-CTTAGCCCGGATATAG-C
* *
31740135 -ACTAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT
1 AACTCGCACAAATGCCTTC-GGACTTAGCCCGGATAT
31740171 CATTCGAATA
Statistics
Matches: 163, Mismatches: 15, Indels: 23
0.81 0.07 0.11
Matches are distributed among these distances:
36 17 0.10
37 20 0.12
38 47 0.29
39 31 0.19
40 44 0.27
41 4 0.02
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (39 bp):
AACTCGCACAAATGCCTTCGGACTTAGCCCGGATATAGC
Found at i:31740144 original size:79 final size:78
Alignment explanation
Indices: 31739943--31740170 Score: 265
Period size: 75 Copynumber: 3.0 Consensus size: 78
31739933 CGGTTACAGT
* * *
31739943 AACTCGCACAAATGCCTT-GGACTTAGCCCGG-T-TCAATAACTCGCAC-AATGCCTTCGGGACT
1 AACTCGCAC-AATGCCTTCGGACTTAGCCCGGATAT-AGTCACTAGCACAAATGCCTTCGGGACT
*
31740004 TAGCCCGG-TATAAT
64 TAGCCCGGATATAAC
* * *
31740018 AACTCGCACAATGCCTTCGG-GTTAACCCGGA-ATTAGTCACTAGCACAAATGCCTTC-GGTCTT
1 AACTCGCACAATGCCTTCGGACTTAGCCCGGATA-TAGTCACTAGCACAAATGCCTTCGGGACTT
*
31740080 AGCCCGGATATAGC
65 AGCCCGGATATAAC
* *
31740094 AACTCGCACGAATGCCTTCGGATCTTAGTCCGGATATAGTCACTAGCACAAAAGCCTTCGGGACT
1 AACTCGCAC-AATGCCTTCGGA-CTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACT
31740159 TAGCCCGGATAT
64 TAGCCCGGATAT
31740171 CATTCGAATA
Statistics
Matches: 129, Mismatches: 13, Indels: 17
0.81 0.08 0.11
Matches are distributed among these distances:
74 16 0.12
75 32 0.25
76 23 0.18
77 11 0.09
79 30 0.23
80 17 0.13
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (78 bp):
AACTCGCACAATGCCTTCGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTA
GCCCGGATATAAC
Found at i:31744437 original size:40 final size:40
Alignment explanation
Indices: 31744378--31744588 Score: 338
Period size: 40 Copynumber: 5.3 Consensus size: 40
31744368 ATTCGGATTG
31744378 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
31744418 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
31744458 ATAACCGGGCCAAGTCCCGAAGGCA-ATGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
31744497 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
31744537 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
*
31744577 ATATCC-GGCTAA
1 ATAACCGGGCTAA
31744589 AACCTGAAGG
Statistics
Matches: 160, Mismatches: 9, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
39 45 0.28
40 115 0.72
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:31744598 original size:79 final size:80
Alignment explanation
Indices: 31744378--31744588 Score: 347
Period size: 79 Copynumber: 2.7 Consensus size: 80
31744368 ATTCGGATTG
31744378 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
*
31744443 TTTGTGCGAGTTACT
66 ATTGTGCGAGTTACT
* * *
31744458 ATAACCGGGCCAAGTCCCGAAGGCA-ATGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
31744522 ATTGTGCGAGTTACT
66 ATTGTGCGAGTTACT
*
31744537 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC-GGCTAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAA
31744589 AACCTGAAGG
Statistics
Matches: 121, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
79 83 0.69
80 38 0.31
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
ATTGTGCGAGTTACT
Found at i:31746358 original size:16 final size:16
Alignment explanation
Indices: 31746337--31746367 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
31746327 ACAAATCTCG
31746337 AAATGCCGAAAAGCTA
1 AAATGCCGAAAAGCTA
31746353 AAATGCCGAAAAGCT
1 AAATGCCGAAAAGCT
31746368 GAAAGTCTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.48, C:0.19, G:0.19, T:0.13
Consensus pattern (16 bp):
AAATGCCGAAAAGCTA
Found at i:31746665 original size:28 final size:29
Alignment explanation
Indices: 31746605--31746673 Score: 122
Period size: 28 Copynumber: 2.4 Consensus size: 29
31746595 TTCGGGTCAG
*
31746605 ATGGGCCATATGAATGTGATTTGGGCCTA
1 ATGGGCCATATGAATGAGATTTGGGCCTA
31746634 ATGGGCCATATGAATGAGA-TTGGGCCTA
1 ATGGGCCATATGAATGAGATTTGGGCCTA
31746662 ATGGGCCATATG
1 ATGGGCCATATG
31746674 CATGTATGTA
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
28 21 0.54
29 18 0.46
ACGTcount: A:0.26, C:0.14, G:0.32, T:0.28
Consensus pattern (29 bp):
ATGGGCCATATGAATGAGATTTGGGCCTA
Found at i:31747005 original size:27 final size:27
Alignment explanation
Indices: 31746971--31747099 Score: 113
Period size: 27 Copynumber: 4.8 Consensus size: 27
31746961 CCGTAATAAA
*
31746971 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTAACTTGTG
31746998 AAATTACCAAAATA-CCCTCAACTTGT-
1 AAATTACCAAAATACCCCT-AACTTGTG
* * *
31747024 ACAATTACCGAAATA-CCCTCGACTTGTA
1 A-AATTACCAAAATACCCCT-AACTTGTG
* **
31747052 AAATTACCAAAATGCCCCTAA-GGGTG
1 AAATTACCAAAATACCCCTAACTTGTG
* *
31747078 AGAATGACTAAAATACCCCTAA
1 A-AATTACCAAAATACCCCTAA
31747100 GTGTTGAATG
Statistics
Matches: 85, Mismatches: 12, Indels: 10
0.79 0.11 0.09
Matches are distributed among these distances:
26 8 0.09
27 72 0.85
28 5 0.06
ACGTcount: A:0.41, C:0.25, G:0.10, T:0.24
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAACTTGTG
Found at i:31753851 original size:55 final size:55
Alignment explanation
Indices: 31753785--31753900 Score: 142
Period size: 55 Copynumber: 2.1 Consensus size: 55
31753775 ATAAATGTCT
* * * ** * *
31753785 ACGCCCGTGTTATTTTGGCAAGTTCGGCCATGGTTGCTTGGCACGGGCGTGTTGC
1 ACGCCCGTGTTAATTTGACAAGTTCGGCCACGGTTGCCAGGCACGGGCATGTCGC
* * *
31753840 ACGCCCGTGTTAATTTGATAGGTTCGGCCACGGTTTCCAGGCACGGGCATGTCGC
1 ACGCCCGTGTTAATTTGACAAGTTCGGCCACGGTTGCCAGGCACGGGCATGTCGC
31753895 ACGCCC
1 ACGCCC
31753901 ATTTTGTTTT
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
55 51 1.00
ACGTcount: A:0.14, C:0.28, G:0.32, T:0.27
Consensus pattern (55 bp):
ACGCCCGTGTTAATTTGACAAGTTCGGCCACGGTTGCCAGGCACGGGCATGTCGC
Found at i:31753918 original size:55 final size:55
Alignment explanation
Indices: 31753785--31753919 Score: 139
Period size: 55 Copynumber: 2.5 Consensus size: 55
31753775 ATAAATGTCT
* * ** * *
31753785 ACGCCCGTGTTATTTTGGCAA-GTTCGGCCATGGTTGCTTGGCACGGGCGTGTTGC
1 ACGCCCATGTTATTTTGG-AAGGTTCGGCCACGGTTGCCAGGCACGGGCATGTCGC
* * *
31753840 ACGCCCGTGTTAATTT-GATAGGTTCGGCCACGGTTTCCAGGCACGGGCATGTCGC
1 ACGCCCATGTTATTTTGGA-AGGTTCGGCCACGGTTGCCAGGCACGGGCATGTCGC
* *
31753895 ACGCCCATTTTGTTTTGGAAGGTTC
1 ACGCCCATGTTATTTTGGAAGGTTC
31753920 ACCCACGGCC
Statistics
Matches: 66, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
53 1 0.02
54 2 0.03
55 61 0.92
56 2 0.03
ACGTcount: A:0.14, C:0.24, G:0.31, T:0.30
Consensus pattern (55 bp):
ACGCCCATGTTATTTTGGAAGGTTCGGCCACGGTTGCCAGGCACGGGCATGTCGC
Found at i:31761749 original size:31 final size:31
Alignment explanation
Indices: 31761714--31761774 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
31761704 TGGCCCCATT
31761714 CTTTCTAATCTTATCTACCAGAGGCTTAATA
1 CTTTCTAATCTTATCTACCAGAGGCTTAATA
31761745 CTTTCTAATCTTATCTACCAGAGGCTTAAT
1 CTTTCTAATCTTATCTACCAGAGGCTTAAT
31761775 TAACTGAATC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.28, C:0.23, G:0.10, T:0.39
Consensus pattern (31 bp):
CTTTCTAATCTTATCTACCAGAGGCTTAATA
Found at i:31764611 original size:24 final size:24
Alignment explanation
Indices: 31764583--31764631 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
31764573 TAGTTCAATT
* *
31764583 TTCATAGATCAGCCCGTTCAGAGA
1 TTCATAGATCAACCCATTCAGAGA
*
31764607 TTCATAGATCAACCTATTCAGAGA
1 TTCATAGATCAACCCATTCAGAGA
31764631 T
1 T
31764632 GACAGCAACA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (24 bp):
TTCATAGATCAACCCATTCAGAGA
Found at i:31767317 original size:43 final size:43
Alignment explanation
Indices: 31767256--31767341 Score: 154
Period size: 43 Copynumber: 2.0 Consensus size: 43
31767246 TGTATTAAGC
*
31767256 ATTGTAATAATTATGCTTTTAGTTCTTTGATATTGCATAAATT
1 ATTGTAATAATTATGCTTTTAGTGCTTTGATATTGCATAAATT
*
31767299 ATTGTAATAATTATGCTTTTAGTGCTTTGATATTGCTTAAATT
1 ATTGTAATAATTATGCTTTTAGTGCTTTGATATTGCATAAATT
31767342 GTATATACGG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.29, C:0.07, G:0.13, T:0.51
Consensus pattern (43 bp):
ATTGTAATAATTATGCTTTTAGTGCTTTGATATTGCATAAATT
Found at i:31767472 original size:40 final size:40
Alignment explanation
Indices: 31767377--31767476 Score: 119
Period size: 40 Copynumber: 2.5 Consensus size: 40
31767367 CGATGACAAA
*
31767377 TCGGCTATTTGTGGCACTTGGTGTGCGATTCGACAAAGCT
1 TCGGCTATTTGTGGCACTTAGTGTGCGATTCGACAAAGCT
* * * ** *
31767417 TCAGATATTTGTGGCACTTAGTGTGCGATTTGTGATAGCT
1 TCGGCTATTTGTGGCACTTAGTGTGCGATTCGACAAAGCT
* *
31767457 TCGGCTATGTATGGCACTTA
1 TCGGCTATTTGTGGCACTTA
31767477 ACATGCGAGA
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 49 1.00
ACGTcount: A:0.19, C:0.17, G:0.28, T:0.36
Consensus pattern (40 bp):
TCGGCTATTTGTGGCACTTAGTGTGCGATTCGACAAAGCT
Found at i:31767515 original size:28 final size:28
Alignment explanation
Indices: 31767484--31767537 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
31767474 TTAACATGCG
* *
31767484 AGATATCGAGTGTGGCACTTAGTGTGCA
1 AGATATCGAGTATGACACTTAGTGTGCA
31767512 AGATATCGAGTATGACACTTAGTGTG
1 AGATATCGAGTATGACACTTAGTGTG
31767538 AGAGGCATTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.28, C:0.13, G:0.30, T:0.30
Consensus pattern (28 bp):
AGATATCGAGTATGACACTTAGTGTGCA
Found at i:31773351 original size:26 final size:27
Alignment explanation
Indices: 31773321--31773380 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 27
31773311 CACAATGCTT
31773321 TTATTTCTA-TTCTGTACTTTTTCTT-A
1 TTATTTCTACTTCTG-ACTTTTTCTTAA
* *
31773347 TTATTTTTACTTTTGACTTTTTCTTAA
1 TTATTTCTACTTCTGACTTTTTCTTAA
31773374 TT-TTTCT
1 TTATTTCT
31773381 TTGTCGCGCA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 22 0.76
27 7 0.24
ACGTcount: A:0.15, C:0.13, G:0.03, T:0.68
Consensus pattern (27 bp):
TTATTTCTACTTCTGACTTTTTCTTAA
Found at i:31774921 original size:24 final size:24
Alignment explanation
Indices: 31774894--31774945 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
31774884 TTTAAGCTCC
** * *
31774894 ATGTTAGTGGTTACTTCTACTTTT
1 ATGTTAGTGGCAACATCTACTGTT
31774918 ATGTTAGTGGCAACATCTACTGTT
1 ATGTTAGTGGCAACATCTACTGTT
31774942 ATGT
1 ATGT
31774946 CTGATTCTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.21, C:0.13, G:0.19, T:0.46
Consensus pattern (24 bp):
ATGTTAGTGGCAACATCTACTGTT
Found at i:31793040 original size:29 final size:28
Alignment explanation
Indices: 31792998--31793052 Score: 92
Period size: 29 Copynumber: 1.9 Consensus size: 28
31792988 CAGTTATGCC
31792998 GATTTGGCCTTGGGCCATGCATATCAGCT
1 GATTTGGCCTTGGGCCATG-ATATCAGCT
*
31793027 GATTTGGCTTTGGGCCATGATATCAG
1 GATTTGGCCTTGGGCCATGATATCAG
31793053 TACTTTGAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 7 0.28
29 18 0.72
ACGTcount: A:0.18, C:0.20, G:0.29, T:0.33
Consensus pattern (28 bp):
GATTTGGCCTTGGGCCATGATATCAGCT
Found at i:31800336 original size:49 final size:48
Alignment explanation
Indices: 31800259--31800438 Score: 210
Period size: 49 Copynumber: 3.8 Consensus size: 48
31800249 GTGGTAAGGT
*
31800259 GCTGTTGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCTTCGA
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCTTCGA
* * * *
31800307 GGCTGATGCCATGTCCCAGACATAGTCTTACACTAGCTCTCA-CATGTCTA
1 -GCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATC-T-TCGA
*
31800357 TGCTGATGCCATGTCCCAGACATGGTCTTACACTGAC-A-CATC-TCGTA
1 -GCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCTTCG-A
*
31800404 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTGGCT
31800439 TACGTCCCGA
Statistics
Matches: 113, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
44 12 0.11
45 14 0.12
46 8 0.07
47 1 0.01
48 3 0.03
49 39 0.35
50 36 0.32
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (48 bp):
GCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCTTCGA
Found at i:31805091 original size:42 final size:42
Alignment explanation
Indices: 31805014--31805093 Score: 99
Period size: 42 Copynumber: 1.9 Consensus size: 42
31805004 TGCAGAGGAC
* *
31805014 ACACGGCCAGAACACATGCCCATGTGGCAAGCCGTGTGTCAT
1 ACACGGCCAGAACACACGCCCATGTGGCAACCCGTGTGTCAT
* * *
31805056 ACACGGCCTAG-ACACACGCCCGTGTGTCTACCCGTGTG
1 ACACGGCC-AGAACACACGCCCATGTGGCAACCCGTGTG
31805094 GACAAAATAA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
42 30 0.94
43 2 0.06
ACGTcount: A:0.23, C:0.34, G:0.26, T:0.17
Consensus pattern (42 bp):
ACACGGCCAGAACACACGCCCATGTGGCAACCCGTGTGTCAT
Found at i:31811970 original size:17 final size:17
Alignment explanation
Indices: 31811928--31811973 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
31811918 TATCGTTTAC
31811928 CATTTATCGGGCATTAT
1 CATTTATCGGGCATTAT
* *
31811945 TATTAATCGGGCACTT-T
1 CATTTATCGGGCA-TTAT
31811962 CATTTATCGGGC
1 CATTTATCGGGC
31811974 TATAACGAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
17 22 0.92
18 2 0.08
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.39
Consensus pattern (17 bp):
CATTTATCGGGCATTAT
Found at i:31821518 original size:17 final size:17
Alignment explanation
Indices: 31821476--31821521 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
31821466 TATCATTTAC
31821476 CATTTATCGGGCATTAT
1 CATTTATCGGGCATTAT
* *
31821493 TATTGATCGGGCACTT-T
1 CATTTATCGGGCA-TTAT
31821510 CATTTATCGGGC
1 CATTTATCGGGC
31821522 TACAATGAGT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
17 22 0.92
18 2 0.08
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.39
Consensus pattern (17 bp):
CATTTATCGGGCATTAT
Found at i:31847953 original size:20 final size:20
Alignment explanation
Indices: 31847921--31847993 Score: 85
Period size: 20 Copynumber: 3.6 Consensus size: 20
31847911 TTGTACGGGA
*
31847921 TTGCACTTTGGTGCCTCTGT
1 TTGCACTTCGGTGCCTCTGT
*
31847941 TTGCATTTCGGTGCCTCTAG-
1 TTGCACTTCGGTGCCTCT-GT
* *
31847961 TTGCACTTCAGTGCCTCTAT
1 TTGCACTTCGGTGCCTCTGT
*
31847981 TTACACTTCGGTG
1 TTGCACTTCGGTG
31847994 TCTAATGCGT
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
20 43 0.98
21 1 0.02
ACGTcount: A:0.11, C:0.26, G:0.22, T:0.41
Consensus pattern (20 bp):
TTGCACTTCGGTGCCTCTGT
Found at i:31848987 original size:20 final size:20
Alignment explanation
Indices: 31848949--31848996 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
31848939 TAAATTCTAA
* **
31848949 AAAGATAAATACATTTAATT
1 AAAGATAAATAAAGATAATT
31848969 AAAGATAAATAAAGATAATT
1 AAAGATAAATAAAGATAATT
31848989 AAA-ATAAA
1 AAAGATAAA
31848997 ATCCTAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (20 bp):
AAAGATAAATAAAGATAATT
Found at i:31849546 original size:24 final size:24
Alignment explanation
Indices: 31849500--31849552 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
31849490 CAGAATTAAA
* *
31849500 TGAATATACATGAATATTTTCAAT
1 TGAATATACATGAATAGTCTCAAT
*
31849524 TGAATATACATGAATGGTCTCAAT
1 TGAATATACATGAATAGTCTCAAT
*
31849548 GGAAT
1 TGAAT
31849553 GTATATATCA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.40, C:0.09, G:0.15, T:0.36
Consensus pattern (24 bp):
TGAATATACATGAATAGTCTCAAT
Found at i:31854035 original size:27 final size:26
Alignment explanation
Indices: 31854009--31854386 Score: 470
Period size: 27 Copynumber: 14.0 Consensus size: 26
31853999 GGAAAGTTAT
*
31854009 CGAAATACCCCTATAGGGTAGAATTA
1 CGAAATACCCCTGTAGGGTAGAATTA
* *
31854035 TCGAAATACCCTTATAGGGTAGAATTA
1 -CGAAATACCCCTGTAGGGTAGAATTA
*
31854062 CCGAAATACCCTTGTAGGGTAGAATTA
1 -CGAAATACCCCTGTAGGGTAGAATTA
* *
31854089 CTAAAATACCCCTATAGGGTAGAATTA
1 C-GAAATACCCCTGTAGGGTAGAATTA
*
31854116 TCGAAATACCCTTGTAGGGTAGAATTA
1 -CGAAATACCCCTGTAGGGTAGAATTA
31854143 CCGAAATACCCCTGTAGGGTAGAATTA
1 -CGAAATACCCCTGTAGGGTAGAATTA
31854170 TCGAAATACCCCTGTAGGGTAGAATTA
1 -CGAAATACCCCTGTAGGGTAGAATTA
*
31854197 CTGAAATACCCCTATAGGGTAGAATTA
1 C-GAAATACCCCTGTAGGGTAGAATTA
* * *
31854224 CTAAAATACCCTTGTATGGTAGAATTA
1 C-GAAATACCCCTGTAGGGTAGAATTA
* *
31854251 CCGAAATACCCTTGTAAGGTAGAATTA
1 -CGAAATACCCCTGTAGGGTAGAATTA
31854278 CCGAAATACCCCTGTAGGGTAGAATTA
1 -CGAAATACCCCTGTAGGGTAGAATTA
31854305 CTGAAATACCCCTGTAGGGTAGAATTA
1 C-GAAATACCCCTGTAGGGTAGAATTA
*
31854332 CTAAAATACCCCTGTAGGGTAGAATTA
1 C-GAAATACCCCTGTAGGGTAGAATTA
* * *
31854359 CCAAGATACCCTTGT-GGTGTAAAATTA
1 CGAA-ATACCCCTGTAGG-GTAGAATTA
31854386 C
1 C
31854387 CATTTTGCCC
Statistics
Matches: 319, Mismatches: 25, Indels: 14
0.89 0.07 0.04
Matches are distributed among these distances:
26 7 0.02
27 310 0.97
28 2 0.01
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (26 bp):
CGAAATACCCCTGTAGGGTAGAATTA
Found at i:31854653 original size:28 final size:28
Alignment explanation
Indices: 31854612--31854721 Score: 145
Period size: 27 Copynumber: 4.0 Consensus size: 28
31854602 GGAGGAAGCG
31854612 TTCTGGTGGCTATGCCACAAATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
*
31854640 TTCTGGTGGTTATGCCACAAATATCTG-
1 TTCTGGTGGCTATGCCACAAATATCTGT
*
31854667 TTCTGGTGGCTCTGCCAC-AATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
* * * *
31854694 ATCTGGTGACTCTGTCAC-AATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
31854721 T
1 T
31854722 GGCTGATCGA
Statistics
Matches: 74, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
26 8 0.11
27 40 0.54
28 26 0.35
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.37
Consensus pattern (28 bp):
TTCTGGTGGCTATGCCACAAATATCTGT
Found at i:31855054 original size:27 final size:27
Alignment explanation
Indices: 31855024--31855080 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
31855014 ATTCTGTTAA
* *
31855024 GTGGCTTTGCCACATTATCTG-ATTCTG
1 GTGGCTCTGCCACAATATCTGTA-TCTG
31855051 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTATCTG
31855078 GTG
1 GTG
31855081 ACTTCGTCAC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 26 0.96
28 1 0.04
ACGTcount: A:0.16, C:0.23, G:0.25, T:0.37
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTATCTG
Found at i:31855270 original size:31 final size:31
Alignment explanation
Indices: 31855225--31855287 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
31855215 ATTTTGATTT
* *
31855225 TAATTCTGTTACCTGATACTAATTCTAATTC
1 TAATTCTATCACCTGATACTAATTCTAATTC
* * *
31855256 TAATTCTATCACCTGATTCTGATTCTGATTC
1 TAATTCTATCACCTGATACTAATTCTAATTC
31855287 T
1 T
31855288 CATTTTGATT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.25, C:0.21, G:0.08, T:0.46
Consensus pattern (31 bp):
TAATTCTATCACCTGATACTAATTCTAATTC
Found at i:31855277 original size:6 final size:6
Alignment explanation
Indices: 31855268--31855308 Score: 55
Period size: 6 Copynumber: 6.8 Consensus size: 6
31855258 ATTCTATCAC
* * *
31855268 CTGATT CTGATT CTGATT CTCATT TTGATT CTAATT CTGAT
1 CTGATT CTGATT CTGATT CTGATT CTGATT CTGATT CTGAT
31855309 AATGTTTCTT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.20, C:0.17, G:0.12, T:0.51
Consensus pattern (6 bp):
CTGATT
Found at i:31855285 original size:12 final size:12
Alignment explanation
Indices: 31855246--31855308 Score: 56
Period size: 12 Copynumber: 5.2 Consensus size: 12
31855236 CCTGATACTA
*
31855246 ATTCTAATTCTA
1 ATTCTAATTCTG
*
31855258 ATTCT-ATCACCTG
1 ATTCTAAT--TCTG
*
31855271 ATTCTGATTCTG
1 ATTCTAATTCTG
* *
31855283 ATTCTCATTTTG
1 ATTCTAATTCTG
31855295 ATTCTAATTCTG
1 ATTCTAATTCTG
31855307 AT
1 AT
31855309 AATGTTTCTT
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
11 2 0.05
12 30 0.73
13 7 0.17
14 2 0.05
ACGTcount: A:0.24, C:0.19, G:0.08, T:0.49
Consensus pattern (12 bp):
ATTCTAATTCTG
Found at i:31858980 original size:468 final size:470
Alignment explanation
Indices: 31858049--31858990 Score: 1383
Period size: 468 Copynumber: 2.0 Consensus size: 470
31858039 AGGGCCTTTC
** *
31858049 TAGTTTGATCAAGATTGCAAAGCAAGATGGGTTAATTCAAAGAGCAATAGTAGGAAGGTGTGATT
1 TAGTTTGATCAAGATTGCAAAGCAAGATGGACTAATTCAAAGAGCAAGAGTAGGAAGGTGTGATT
* * *
31858114 TGGCAGTGACACATTTTTTTTTTTTGCAGATGACAGTATTCTATTTGGCAAGGCAAGTGTTGAGG
66 TGACAGTGACAC--TTTTTTTTTTTGCAGATGACAGTATTCTATTTAGCAAGGCAAGTGTGGAGG
* *
31858179 GAACGAATGCGATGAAAACAATTATACTAGAATCTAAATGAGCATTAGGCCAAGTGGTCAATTGT
129 GAACGAATACGACGAAAACAATTATACTAGAATCTAAATGAGCATTAGGCCAAGTGGTCAATTGT
* * * *
31858244 GGTAAATCGCTCATTTAATTTAGTAAAAAAGTTAATAGTATGATAAAGGTACGAATTGGGGGATG
194 GATAAATCGCTCATTTAATTTAGTAAAAAAGTTAATAATATGATAAAGGAACGAATTGGGAGATG
* * *
31858309 TTCTGTGAGTACGAATTTTGAGTAACCCAGAAAAGTATCTCGAGTTGCCAACTTTGGTTGGACAA
259 TTCTGTGAGTACGAATTTTAAGTAACCCAGAAAAGTATCTCGAGCTGCCAACTTTGGCTGGACAA
* * *
31858374 AGGAAGAAGGAAGCATTCATGAGTTTCAAAGAGAGATTTATAAAACGAATAGAAAGTTGGATTGT
324 AGGAAGAAGGAAGCATTCATGAGTTTCAAAGAGAGATTTATAAAACAAATAGAAAGTTAGAGTGT
* * * * * *
31858439 TCGCCATTTGTTAGTAGGGAAAAAAGGTATTTATTAATTCTATTTTACAAGCATTTCCAATTAAT
389 TCGCCATTTGTCACTAGGGAAAAAAGGTATTTATTAAGTCCATTTTACAAGCAATTCCAACTAAT
31858504 ACCATACAATGTTTTTT
454 ACCATACAATGTTTTTT
* * *
31858521 TAGTTTGCTCAAGATTGCAAAGCAAGATGGACTAATTCAAGGAGCAAGAGTAGGAAGGTGTGGTT
1 TAGTTTGATCAAGATTGCAAAGCAAGATGGACTAATTCAAAGAGCAAGAGTAGGAAGGTGTGATT
* **
31858586 TGACAGTGACAC-TTTTTTTTTTGCAGATGACATTATTCTATTTAGTGAGGCAAGTGTGGAGGGA
66 TGACAGTGACACTTTTTTTTTTTGCAGATGACAGTATTCTATTTAGCAAGGCAAGTGTGGAGGGA
* * *
31858650 ACGAATACGACGAAAACAATTATACTAGAATC-AGAATGAGCGTTAGGCCAAGTGGTTAATTTTG
131 ACGAATACGACGAAAACAATTATACTAGAATCTA-AATGAGCATTAGGCCAAGTGGTCAATTGTG
** *
31858714 ATAAATCGCTTGTTTAATTTAGTAAAAACA-TTGATAATATGATAAAGGAACGAATT-GGAGATG
195 ATAAATCGCTCATTTAATTTAGTAAAAA-AGTTAATAATATGATAAAGGAACGAATTGGGAGATG
* * * **
31858777 TT-TAGTGAGTACGAATTTTAAGTAACCTAGAAAAGTATCTCGGGCTGCCAA-TTATTGCTGGGT
259 TTCT-GTGAGTACGAATTTTAAGTAACCCAGAAAAGTATCTCGAGCTGCCAACTT-TGGCTGGAC
*
31858840 GAAGGAAGAAGGAAGCATTCATGAGTTTCAAAGAGAGATTTATAAAACAAATAGAAAGTTAGAGT
322 AAAGGAAGAAGGAAGCATTCATGAGTTTCAAAGAGAGATTTATAAAACAAATAGAAAGTTAGAGT
* * *
31858905 GTTCGTCATTTGTCACTAGGGGAAAAAGGTATTTCTTAAGTCCATTTTACAAGCAATTCCAACTA
387 GTTCGCCATTTGTCACTAGGGAAAAAAGGTATTTATTAAGTCCATTTTACAAGCAATTCCAACTA
31858970 ATACCATACAATGTTTTTT
452 ATACCATACAATGTTTTTT
31858989 TA
1 TA
31858991 TTACTGGTTA
Statistics
Matches: 421, Mismatches: 45, Indels: 12
0.88 0.09 0.03
Matches are distributed among these distances:
467 3 0.01
468 195 0.46
469 152 0.36
470 1 0.00
472 70 0.17
ACGTcount: A:0.35, C:0.11, G:0.23, T:0.31
Consensus pattern (470 bp):
TAGTTTGATCAAGATTGCAAAGCAAGATGGACTAATTCAAAGAGCAAGAGTAGGAAGGTGTGATT
TGACAGTGACACTTTTTTTTTTTGCAGATGACAGTATTCTATTTAGCAAGGCAAGTGTGGAGGGA
ACGAATACGACGAAAACAATTATACTAGAATCTAAATGAGCATTAGGCCAAGTGGTCAATTGTGA
TAAATCGCTCATTTAATTTAGTAAAAAAGTTAATAATATGATAAAGGAACGAATTGGGAGATGTT
CTGTGAGTACGAATTTTAAGTAACCCAGAAAAGTATCTCGAGCTGCCAACTTTGGCTGGACAAAG
GAAGAAGGAAGCATTCATGAGTTTCAAAGAGAGATTTATAAAACAAATAGAAAGTTAGAGTGTTC
GCCATTTGTCACTAGGGAAAAAAGGTATTTATTAAGTCCATTTTACAAGCAATTCCAACTAATAC
CATACAATGTTTTTT
Found at i:31862743 original size:48 final size:48
Alignment explanation
Indices: 31862638--31862769 Score: 192
Period size: 48 Copynumber: 2.7 Consensus size: 48
31862628 CAAATTATAA
* *
31862638 CTTGATTTGGCTTCGGGCCATGGTATAGGTGTATTTCGGAGATGAGTTAC
1 CTTGATTTGGCTTCGGGCCATGGTATA-G-GTACTTCGGAGATAAGTTAC
* *
31862688 CTTGATTTGGCTACGGGCCATGGTATAGGTACTTCGGGGATAAGTTAC
1 CTTGATTTGGCTTCGGGCCATGGTATAGGTACTTCGGAGATAAGTTAC
* *
31862736 CTTGATTTGGCTTCAGGCCATGGTCTAGGTACTT
1 CTTGATTTGGCTTCGGGCCATGGTATAGGTACTT
31862770 ATCGATTGTG
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
48 48 0.64
49 1 0.01
50 26 0.35
ACGTcount: A:0.18, C:0.17, G:0.30, T:0.35
Consensus pattern (48 bp):
CTTGATTTGGCTTCGGGCCATGGTATAGGTACTTCGGAGATAAGTTAC
Found at i:31868845 original size:29 final size:29
Alignment explanation
Indices: 31868813--31868868 Score: 67
Period size: 29 Copynumber: 1.9 Consensus size: 29
31868803 TATTTTGCTA
* **
31868813 AAAAAGGCCCATTTTTAATTTTATTTATG
1 AAAAAGGCCCACTTAAAATTTTATTTATG
* *
31868842 AAAATGGGCCACTTAAAATTTTATTTA
1 AAAAAGGCCCACTTAAAATTTTATTTA
31868869 CTGGAATGGG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 22 1.00
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.41
Consensus pattern (29 bp):
AAAAAGGCCCACTTAAAATTTTATTTATG
Found at i:31869087 original size:24 final size:24
Alignment explanation
Indices: 31869059--31869115 Score: 114
Period size: 24 Copynumber: 2.4 Consensus size: 24
31869049 TTTATAAGTG
31869059 TTAGGGTTTTATTTGTTTTAGGGT
1 TTAGGGTTTTATTTGTTTTAGGGT
31869083 TTAGGGTTTTATTTGTTTTAGGGT
1 TTAGGGTTTTATTTGTTTTAGGGT
31869107 TTAGGGTTT
1 TTAGGGTTT
31869116 AAGAGAAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.12, C:0.00, G:0.30, T:0.58
Consensus pattern (24 bp):
TTAGGGTTTTATTTGTTTTAGGGT
Found at i:31869155 original size:28 final size:28
Alignment explanation
Indices: 31869121--31869210 Score: 135
Period size: 28 Copynumber: 3.2 Consensus size: 28
31869111 GGTTTAAGAG
* * * *
31869121 AAAATAAATCAAGATTTAGGGATTTTAA
1 AAAATAAATTAGGGTTTAGGAATTTTAA
31869149 AAAATAAATTAGGGTTTAGGAATTTTAA
1 AAAATAAATTAGGGTTTAGGAATTTTAA
31869177 AAAATAAATTAGGGTTTAGGAATTTTTAA
1 AAAATAAATTAGGGTTTAGGAA-TTTTAA
31869206 AAAAT
1 AAAAT
31869211 TAGGTTTAAG
Statistics
Matches: 57, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
28 46 0.81
29 11 0.19
ACGTcount: A:0.49, C:0.01, G:0.16, T:0.34
Consensus pattern (28 bp):
AAAATAAATTAGGGTTTAGGAATTTTAA
Found at i:31869681 original size:126 final size:126
Alignment explanation
Indices: 31869353--31870097 Score: 804
Period size: 126 Copynumber: 5.9 Consensus size: 126
31869343 AAGTTTGTGA
* * * * * * *
31869353 AAAAATAATTTTGAGAAGACGGTTATGAAAAAATAGGTTCAAAAGCGGTTCAAGCAAGATGTACT
1 AAAAATAATTTTGAAAAGACAGTTATGAAAAAATAGGGTAAAAAACGCTTCAAGCAAGATGCACT
* * * ** * *
31869418 GTCAGCAAAAGTACTGAAAAAAGTTCCCAGCTGGATACTCTTTTTCTACAGTAGTTTTTAAA
66 GTCAACAAAAGTACTGAAAAAAGCTCCCAGCTAGACGCTCTTTTTCTACAGTAGTTTCT-AG
* ** * * * *
31869480 AAAAATAATTTTGAGAAGATGGTTCTAAAAAAATAGGGTAAAAAACGCTTCAAGCAGGATGCATT
1 AAAAATAATTTTGAAAAGACAGTTATGAAAAAATAGGGTAAAAAACGCTTCAAGCAAGATGCACT
* * * * * *
31869545 ATTAGA-AAAAGTATTGAAGAAAGCTCCTAGCTAGACGCTCTTTTTCTATAGTAGTTTCTAG
66 GTCA-ACAAAAGTACTGAAAAAAGCTCCCAGCTAGACGCTCTTTTTCTACAGTAGTTTCTAG
* * *
31869606 AAAAATAATTTTGAAAATACAGTTTTGAAAAAATAGGGTAAAAAATGCTT-AGAGCAAGATGCAC
1 AAAAATAATTTTGAAAAGACAGTTATGAAAAAATAGGGTAAAAAACGCTTCA-AGCAAGATGCAC
* * * * * *
31869670 TATCAACAAAAGTATTGAAGAAAGCTCCTAGCTAGATGCTCTTTTTCTATAGTAGTTTCTAG
65 TGTCAACAAAAGTACTGAAAAAAGCTCCCAGCTAGACGCTCTTTTTCTACAGTAGTTTCTAG
* * * * *
31869732 AAAAATAATATTGAAAATACAGTTTTGAAAAAATAGGGTAAAAAACGCTTCAAGCAGGATGTACT
1 AAAAATAATTTTGAAAAGACAGTTATGAAAAAATAGGGTAAAAAACGCTTCAAGCAAGATGCACT
* * * *
31869797 GTCAGCAAAAGTACTAAAAAAAGCTCCCAGCTAGACGCTCTTTTTCTAAAATAGTTTCT-G
66 GTCAACAAAAGTACTGAAAAAAGCTCCCAGCTAGACGCTCTTTTTCTACAGTAGTTTCTAG
* * * *
31869857 AAAAA-AA-TTTAAAAAGATAGTTATGAAATAAT---GTAAAAAACGCTTCAAGCAAGATGCATT
1 AAAAATAATTTTGAAAAGACAGTTATGAAAAAATAGGGTAAAAAACGCTTCAAGCAAGATGCACT
* * ** * * * * * *
31869917 GCCAGCAAAAGTGTTGAAAAAAGCTTCTAGCTAGACACTCTTTTTCGACAATAGTTTCTAAA
66 GTCAACAAAAGTACTGAAAAAAGCTCCCAGCTAGACGCTCTTTTTCTACAGTAGTTTCT-AG
* ** * * *
31869979 AAAAATAATTTTGAGAAGATGGTTCTGAAAAAATAGAGTAAAAAAACGCTTCAAGCAGGATGCAC
1 AAAAATAATTTTGAAAAGACAGTTATGAAAAAATAGGGT-AAAAAACGCTTCAAGCAAGATGCAC
31870044 TGTCAACAAAAGTACTGAAAAAAGCTCCCAGCTAGACGCTCTTTTTCTACAGTA
65 TGTCAACAAAAGTACTGAAAAAAGCTCCCAGCTAGACGCTCTTTTTCTACAGTA
31870098 CATCCTGCTT
Statistics
Matches: 524, Mismatches: 82, Indels: 23
0.83 0.13 0.04
Matches are distributed among these distances:
120 75 0.14
122 5 0.01
123 21 0.04
124 22 0.04
125 8 0.02
126 221 0.42
127 104 0.20
128 68 0.13
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (126 bp):
AAAAATAATTTTGAAAAGACAGTTATGAAAAAATAGGGTAAAAAACGCTTCAAGCAAGATGCACT
GTCAACAAAAGTACTGAAAAAAGCTCCCAGCTAGACGCTCTTTTTCTACAGTAGTTTCTAG
Found at i:31876234 original size:20 final size:20
Alignment explanation
Indices: 31876190--31876228 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
31876180 AGGGACTAAA
* *
31876190 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
31876210 ATGAAAAATTCTAAAATTT
1 ATGAAAAATTCTAAAATTT
31876229 TTTGAATACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.49, C:0.03, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:31885820 original size:37 final size:36
Alignment explanation
Indices: 31885759--31885836 Score: 102
Period size: 37 Copynumber: 2.1 Consensus size: 36
31885749 TTATTACGAA
* * *
31885759 GTCTTACCCAGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATC-G
* *
31885796 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCG
31885832 GTCTT
1 GTCTT
31885837 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
36 6 0.17
37 30 0.83
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (36 bp):
GTCTTACCCAGACAAAATCCCCACACGAAGTCATCG
Found at i:31886181 original size:51 final size:49
Alignment explanation
Indices: 31885955--31886493 Score: 787
Period size: 47 Copynumber: 11.1 Consensus size: 49
31885945 CCCTTCGGGA
* * * * *
31885955 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * **
31886002 CCTGTCAC--ACGTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
31886049 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
31886096 CCTATCAC--GTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
31886143 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
31886194 CCTATCAC--GTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
31886241 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
31886292 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
31886341 CCTATCAC--GTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
31886388 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
31886439 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
31886490 CTTA
1 CTTA
31886494 CTATCATTTC
Statistics
Matches: 454, Mismatches: 24, Indels: 24
0.90 0.05 0.05
Matches are distributed among these distances:
47 222 0.49
49 48 0.11
51 184 0.41
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:31886205 original size:98 final size:98
Alignment explanation
Indices: 31885966--31886490 Score: 814
Period size: 98 Copynumber: 5.4 Consensus size: 98
31885956 TTATCACATT
* * * * * * **
31885966 TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACACGTATACACTTTCACATTCA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACACTTTCACATTCA
31886031 TCACATCGGCCATTAGGCCTTATCAC----ATA
66 TCACATCGGCCATTAGGCCTTATCACATATATA
*
31886060 TATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACGTATATACACTTTCACATTCA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACACTTTCACATTCA
31886125 TCACATCGGCCATTAGGCCTTATCACATATATA
66 TCACATCGGCCATTAGGCCTTATCACATATATA
*
31886158 TATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACGTATATACACTTTCACATTCA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACACTTTCACATTCA
31886223 TCACATCGGCCATTAGGCCTTATCACATATATA
66 TCACATCGGCCATTAGGCCTTATCACATATATA
*
31886256 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATT
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCAC--ATATATACACTTTCACATT
* *
31886321 CATCACATCGGCCATTAGGCCCTATCAC----GTA
64 CATCACATCGGCCATTAGGCCTTATCACATATATA
*
31886352 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATATACACTTTCACA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCAC----ATATATACACTTTCACA
31886417 TTCATCACATCGGCCATTAGGCCTTATCACATATATA
62 TTCATCACATCGGCCATTAGGCCTTATCACATATATA
31886454 TATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCC
31886491 TTACTATCAT
Statistics
Matches: 404, Mismatches: 15, Indels: 16
0.93 0.03 0.04
Matches are distributed among these distances:
94 82 0.20
96 46 0.11
98 192 0.48
100 45 0.11
102 39 0.10
ACGTcount: A:0.29, C:0.30, G:0.10, T:0.31
Consensus pattern (98 bp):
TATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACACTTTCACATTCA
TCACATCGGCCATTAGGCCTTATCACATATATA
Found at i:31890152 original size:16 final size:16
Alignment explanation
Indices: 31890127--31890157 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
31890117 CTACAATGGT
31890127 TGAAAAGCCGAAAAGC
1 TGAAAAGCCGAAAAGC
*
31890143 TGAAATGCCGAAAAG
1 TGAAAAGCCGAAAAG
31890158 TAGGTTGTCG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.16, G:0.26, T:0.10
Consensus pattern (16 bp):
TGAAAAGCCGAAAAGC
Found at i:31895216 original size:2 final size:2
Alignment explanation
Indices: 31895209--31895239 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
31895199 TCATGCTTAA
31895209 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
31895240 TGAAGAAAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:31907831 original size:29 final size:29
Alignment explanation
Indices: 31907793--31907892 Score: 130
Period size: 29 Copynumber: 3.5 Consensus size: 29
31907783 AATGTGGCTA
31907793 GGCCTAATGGGCCATATAAATGTGATTTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
* *
31907822 GGCCTAATGGGCCATATACAGGTGATTTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
* ** *
31907851 GGCCTAATGGGTCATAGGAATATGA-TTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
*
31907879 GGCTTAATGGGCCA
1 GGCCTAATGGGCCA
31907893 AATACAGGTA
Statistics
Matches: 61, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
28 15 0.25
29 46 0.75
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (29 bp):
GGCCTAATGGGCCATATAAATGTGATTTG
Found at i:31907892 original size:57 final size:58
Alignment explanation
Indices: 31907793--31907901 Score: 157
Period size: 57 Copynumber: 1.9 Consensus size: 58
31907783 AATGTGGCTA
* * *
31907793 GGCCTAATGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAGGTGATTTG
1 GGCCTAATGGGCCATAGAAATATGATTTGGGCCTAATGGGCCAAATACAGGTGATTTG
* * *
31907851 GGCCTAATGGGTCATAGGAATATGA-TTGGGCTTAATGGGCCAAATACAGGT
1 GGCCTAATGGGCCATAGAAATATGATTTGGGCCTAATGGGCCAAATACAGGT
31907902 ATGTGAAATT
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
57 24 0.53
58 21 0.47
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.28
Consensus pattern (58 bp):
GGCCTAATGGGCCATAGAAATATGATTTGGGCCTAATGGGCCAAATACAGGTGATTTG
Found at i:31912352 original size:21 final size:21
Alignment explanation
Indices: 31912320--31912370 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
31912310 CATAAAATTT
31912320 ATTA-GAAATTTACAAAAAAA
1 ATTATGAAATTTACAAAAAAA
* * *
31912340 ATTATGAAGTTTATAAAAATA
1 ATTATGAAATTTACAAAAAAA
31912361 ATTAT-AAATT
1 ATTATGAAATT
31912371 ATTGAACCAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
20 8 0.31
21 18 0.69
ACGTcount: A:0.57, C:0.02, G:0.06, T:0.35
Consensus pattern (21 bp):
ATTATGAAATTTACAAAAAAA
Found at i:31912524 original size:35 final size:34
Alignment explanation
Indices: 31912485--31912558 Score: 87
Period size: 36 Copynumber: 2.1 Consensus size: 34
31912475 TTAAAAATGC
*
31912485 AAAAATTATTAAAAATAATT-AGAAGTTTATAAAATA
1 AAAAATTATTAAAAA-AATTGA-AAATTTATAAAA-A
* *
31912521 AAAAATTATTGAAAACATTGAAAATTTATAAAAA
1 AAAAATTATTAAAAAAATTGAAAATTTATAAAAA
31912555 AAAA
1 AAAA
31912559 TTGTTATTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
34 5 0.15
35 14 0.41
36 15 0.44
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.30
Consensus pattern (34 bp):
AAAAATTATTAAAAAAATTGAAAATTTATAAAAA
Found at i:31912756 original size:9 final size:9
Alignment explanation
Indices: 31912744--31912769 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
31912734 AAAATATATT
31912744 AATATTTTG
1 AATATTTTG
31912753 AATATTTTG
1 AATATTTTG
31912762 AATATTTT
1 AATATTTT
31912770 ATAATTAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.58
Consensus pattern (9 bp):
AATATTTTG
Found at i:31916184 original size:14 final size:13
Alignment explanation
Indices: 31916157--31916187 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
31916147 AAATTAATGT
31916157 TTAATTAAATTAA
1 TTAATTAAATTAA
31916170 TTAATTAAGATTAA
1 TTAATTAA-ATTAA
31916184 TTAA
1 TTAA
31916188 GTTATAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.47
14 9 0.53
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (13 bp):
TTAATTAAATTAA
Found at i:31922498 original size:48 final size:48
Alignment explanation
Indices: 31922427--31922716 Score: 463
Period size: 48 Copynumber: 6.0 Consensus size: 48
31922417 CAAGATAAAT
* *
31922427 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
31922475 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
31922523 ATATATATATGTGGTAAAGCCGGATGGCTAATGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
** **
31922571 ATATGCATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
31922619 ATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
31922667 ATATGTATATTTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
31922715 AT
1 AT
31922717 GTGTGTATAT
Statistics
Matches: 221, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 221 1.00
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:31922896 original size:37 final size:37
Alignment explanation
Indices: 31922846--31922966 Score: 215
Period size: 37 Copynumber: 3.3 Consensus size: 37
31922836 GCATGAAACT
31922846 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
1 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
31922883 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
1 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
* *
31922920 TGGAGATTTTGTCCGGGTAAGACCCGATAACTACGTG
1 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
*
31922957 TGGGGATTAT
1 TGGAGATTAT
31922967 TCGAGCTAAA
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 80 1.00
ACGTcount: A:0.24, C:0.17, G:0.32, T:0.26
Consensus pattern (37 bp):
TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
Found at i:31926448 original size:64 final size:65
Alignment explanation
Indices: 31926373--31926493 Score: 181
Period size: 64 Copynumber: 1.9 Consensus size: 65
31926363 TTTAACAAAA
* * **
31926373 TTTTTTCTCTCATTTTTTTTCTTGTCAAACACCATTTTT-TTCTTCAAAACACATGGCCTGCCAT
1 TTTTTTCTCTCATTTTCTCTCTTACCAAACACCATTTTTCTTCTTCAAAACACATGGCCTGCCAT
* *
31926437 TTTTTTTTCTCATTTTCTCTCTTACCAAACACCATTTTTCTTCTTCAAAACATATGG
1 TTTTTTCTCTCATTTTCTCTCTTACCAAACACCATTTTTCTTCTTCAAAACACATGG
31926494 TTCGCTCATT
Statistics
Matches: 50, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
64 34 0.68
65 16 0.32
ACGTcount: A:0.21, C:0.25, G:0.05, T:0.49
Consensus pattern (65 bp):
TTTTTTCTCTCATTTTCTCTCTTACCAAACACCATTTTTCTTCTTCAAAACACATGGCCTGCCAT
Found at i:31935999 original size:294 final size:294
Alignment explanation
Indices: 31935461--31936028 Score: 836
Period size: 294 Copynumber: 1.9 Consensus size: 294
31935451 TTTATTTAAG
* * * *
31935461 TCCTCTAACAACCTTTTGGACTTTTGTAGCCGTTAGAAACAAATTAGAGTCGTTGCAACCATAAA
1 TCCTCTAACAACCTTGTGAACTTTTGTAGCCGCTAGAAACAAATTAGAGTCATTGCAACCATAAA
* *
31935526 AACTAGCATTAAATGCAGTCTACAGCTTCGTTGTAATGGTAGAAGGAGTCTTGTATTGGTAGAAG
66 AACTAGCATCAAATGCAGTCTACAGCTTCGTTGTAATGATAGAAGGAGTCTTGTATTGGTAGAAG
* *
31935591 TCTTTCCAAAATATGACCATCAGGCTTGTTCTATCAATAGAAGTTCTCATGTATCGCTAGAACTT
131 TCTTTCCAAAATATAACCATCAGGCTTGTTCTATCAATAGAAGTTCTCATGTATCGCTAGAACTC
* * *
31935656 TGAGGGTTTCATTTGGTATCAATAGAACCCATTAGAGTATCGATAGAAGTGCAGGAGAGGCTGAA
196 TAAGGGTTTCATTTGGTATCAATAGAACACATCAGAGTATCGATAGAAGTGCAGGAGAGGCTGAA
31935721 CTTTGGCTACTATTTTGACTTATTTTGGTAGAAA
261 CTTTGGCTACTATTTTGACTTATTTTGGTAGAAA
* * * *
31935755 TCCTCTAACAACCTTGTGAACTTTTGTAGCTGCTAGAAACAAATTAGAGTTATTGTAGCCATAAA
1 TCCTCTAACAACCTTGTGAACTTTTGTAGCCGCTAGAAACAAATTAGAGTCATTGCAACCATAAA
* *
31935820 AATTAGCATCAAATGCAGTCTGCAGCTTCGTTGT-ATCGATAGAA-GAGGTCTTGTATTGGTAGA
66 AACTAGCATCAAATGCAGTCTACAGCTTCGTTGTAAT-GATAGAAGGA-GTCTTGTATTGGTAGA
* * ** * * *
31935883 AGTCTTTCTAAAATATAACCGTCAGGCTTGTTCTATCTGTAGAAGTTCTCCTGTATTGGTAGAAC
129 AGTCTTTCCAAAATATAACCATCAGGCTTGTTCTATCAATAGAAGTTCTCATGTATCGCTAGAAC
* * * *
31935948 TCTAAGGGTTTCATTTGGTAT-AAGTAGAACATATCAGAGTATTGGTAGAAGTGCAGGGGAGGCT
194 TCTAAGGGTTTCATTTGGTATCAA-TAGAACACATCAGAGTATCGATAGAAGTGCAGGAGAGGCT
31936012 GAACTTTGGCTACTATT
258 GAACTTTGGCTACTATT
31936029 GTAATAGCCT
Statistics
Matches: 243, Mismatches: 28, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
293 6 0.02
294 237 0.98
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (294 bp):
TCCTCTAACAACCTTGTGAACTTTTGTAGCCGCTAGAAACAAATTAGAGTCATTGCAACCATAAA
AACTAGCATCAAATGCAGTCTACAGCTTCGTTGTAATGATAGAAGGAGTCTTGTATTGGTAGAAG
TCTTTCCAAAATATAACCATCAGGCTTGTTCTATCAATAGAAGTTCTCATGTATCGCTAGAACTC
TAAGGGTTTCATTTGGTATCAATAGAACACATCAGAGTATCGATAGAAGTGCAGGAGAGGCTGAA
CTTTGGCTACTATTTTGACTTATTTTGGTAGAAA
Found at i:31942287 original size:42 final size:42
Alignment explanation
Indices: 31942239--31942398 Score: 178
Period size: 42 Copynumber: 3.8 Consensus size: 42
31942229 TTAGGGTTAT
*
31942239 TGAGATTAT-GTGTAAGACCATATCTGGGATATGACATCTATA
1 TGAGATT-TCGTGTAAGACCATATCTGGGATATGACATCGATA
* * * * *
31942281 TGAGATTTCGTATAAGACCATATTTGAGATATGGCATCGGTA
1 TGAGATTTCGTGTAAGACCATATCTGGGATATGACATCGATA
* * * *
31942323 TGAGATTTCTTGTAAGACCATAGCTGGGCTATTAGCATCGATA
1 TGAGATTTCGTGTAAGACCATATCTGGGATATGA-CATCGATA
* * *
31942366 CGAGATTACATGTAAGACCATATCTGGGATATG
1 TGAGATTTCGTGTAAGACCATATCTGGGATATG
31942399 GCATTGGTAC
Statistics
Matches: 95, Mismatches: 21, Indels: 3
0.80 0.18 0.03
Matches are distributed among these distances:
41 1 0.01
42 60 0.63
43 34 0.36
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.32
Consensus pattern (42 bp):
TGAGATTTCGTGTAAGACCATATCTGGGATATGACATCGATA
Found at i:31942399 original size:85 final size:84
Alignment explanation
Indices: 31942249--31942407 Score: 210
Period size: 85 Copynumber: 1.9 Consensus size: 84
31942239 TGAGATTATG
* * * * * *
31942249 TGTAAGACCATATCTGGGATATGACATCTATATGAGATTTCGTATAAGACCATATTTGAGATATG
1 TGTAAGACCATAGCTGGGATATGACATCGATACGAGATTACATATAAGACCATATCTGAGATATG
31942314 GCATCGGTATGAGATTTCT
66 GCATCGGTATGAGATTTCT
* * * *
31942333 TGTAAGACCATAGCTGGGCTATTAGCATCGATACGAGATTACATGTAAGACCATATCTGGGATAT
1 TGTAAGACCATAGCTGGGATATGA-CATCGATACGAGATTACATATAAGACCATATCTGAGATAT
*
31942398 GGCATTGGTA
65 GGCATCGGTA
31942408 CAGTACCGTG
Statistics
Matches: 63, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
84 21 0.33
85 42 0.67
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.31
Consensus pattern (84 bp):
TGTAAGACCATAGCTGGGATATGACATCGATACGAGATTACATATAAGACCATATCTGAGATATG
GCATCGGTATGAGATTTCT
Found at i:31956285 original size:40 final size:40
Alignment explanation
Indices: 31956084--31956271 Score: 306
Period size: 40 Copynumber: 4.7 Consensus size: 40
31956074 ATTCGGATTG
31956084 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
31956123 ATATCCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
31956163 ATAACTGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
31956203 ATAACCGGGCTAAGTCCCAAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
31956243 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
31956272 AGTGAGTAGC
Statistics
Matches: 136, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 12 0.09
40 124 0.91
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:31956285 original size:80 final size:79
Alignment explanation
Indices: 31956084--31956294 Score: 309
Period size: 80 Copynumber: 2.7 Consensus size: 79
31956074 ATTCGGATTG
*
31956084 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATATCCAGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC-GGCTAAGTCCCAAAGGCA
*
31956148 TTTGTGCGAGTTACT
65 ATTGTGCGAGTTACT
* * * *
31956163 ATAACTGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCAAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC-GGCTAAGTCCCAAAGGCA
31956228 ATTGTGCGAGTTACT
65 ATTGTGCGAGTTACT
* *
31956243 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGTGAG-TAGCTATATCCGGCTAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGCTAA
31956295 ACCCCGAAGG
Statistics
Matches: 117, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
79 20 0.17
80 97 0.83
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGCTAAGTCCCAAAGGCAA
TTGTGCGAGTTACT
Found at i:31961793 original size:22 final size:22
Alignment explanation
Indices: 31961768--31961812 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
31961758 GATGCATTTC
*
31961768 ATGC-ATTTTCATGCCATTAATA
1 ATGCAATTATCATG-CATTAATA
*
31961790 ATGCAATTATCATGCATTCATA
1 ATGCAATTATCATGCATTAATA
31961812 A
1 A
31961813 ACCATACAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.38
Consensus pattern (22 bp):
ATGCAATTATCATGCATTAATA
Found at i:31974149 original size:18 final size:18
Alignment explanation
Indices: 31974126--31974163 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
31974116 TATTTAGTAA
31974126 AATATTGAGAAGAATTGG
1 AATATTGAGAAGAATTGG
31974144 AATATTGAGAAGAATTGG
1 AATATTGAGAAGAATTGG
31974162 AA
1 AA
31974164 CCTTGAGTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.47, C:0.00, G:0.26, T:0.26
Consensus pattern (18 bp):
AATATTGAGAAGAATTGG
Found at i:31974169 original size:18 final size:18
Alignment explanation
Indices: 31974129--31974170 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
31974119 TTAGTAAAAT
*
31974129 ATTGAGAAGAATTGGAAT
1 ATTGAGAAGAATTGGAAC
31974147 ATTGAGAAGAATTGGAAC
1 ATTGAGAAGAATTGGAAC
*
31974165 CTTGAG
1 ATTGAG
31974171 TTCTTAGATG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.40, C:0.05, G:0.29, T:0.26
Consensus pattern (18 bp):
ATTGAGAAGAATTGGAAC
Found at i:31976560 original size:44 final size:44
Alignment explanation
Indices: 31976512--31976610 Score: 126
Period size: 44 Copynumber: 2.2 Consensus size: 44
31976502 ACCTGCGTGA
* * ** *
31976512 GACATGGCGTTAGCTTGTGGTGTGTTAGTATAAGACCTGTCTAG
1 GACATGGCATCAGCTTGTGACGTGTCAGTATAAGACCTGTCTAG
* * *
31976556 GACATTGCATCAGCTTGTGACGTGTCAGTGTAAGACCTGTCTGG
1 GACATGGCATCAGCTTGTGACGTGTCAGTATAAGACCTGTCTAG
31976600 GACATGGCATC
1 GACATGGCATC
31976611 GACACCGATA
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.30
Consensus pattern (44 bp):
GACATGGCATCAGCTTGTGACGTGTCAGTATAAGACCTGTCTAG
Found at i:31976703 original size:49 final size:49
Alignment explanation
Indices: 31976581--31976708 Score: 161
Period size: 49 Copynumber: 2.6 Consensus size: 49
31976571 TGTGACGTGT
31976581 CAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAGAGC
* * * * *
31976630 AAGTCTAAGACCTGTCTGGGACATGGCATCGAC-CTCGCTATATG-TAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACAC-CGATAGATGAGAGC
* *
31976678 CAGTGTAAGACCATGTTTGGAACATGGCATC
1 CAGTGTAAGACC-TGTCTGGGACATGGCATC
31976709 TGCATCTTAA
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
48 14 0.21
49 54 0.79
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAGAGC
Found at i:31976729 original size:32 final size:32
Alignment explanation
Indices: 31976688--31976758 Score: 142
Period size: 32 Copynumber: 2.2 Consensus size: 32
31976678 CAGTGTAAGA
31976688 CCATGTTTGGAACATGGCATCTGCATCTTAAC
1 CCATGTTTGGAACATGGCATCTGCATCTTAAC
31976720 CCATGTTTGGAACATGGCATCTGCATCTTAAC
1 CCATGTTTGGAACATGGCATCTGCATCTTAAC
31976752 CCATGTT
1 CCATGTT
31976759 AGGGCTATTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 39 1.00
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.32
Consensus pattern (32 bp):
CCATGTTTGGAACATGGCATCTGCATCTTAAC
Found at i:31977220 original size:21 final size:20
Alignment explanation
Indices: 31977194--31977233 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
31977184 GTTATAATGA
*
31977194 CCACACGGGTGTGTTGCCCTT
1 CCACACGGGCGTG-TGCCCTT
31977215 CCACACGGGCGTGTGCCCT
1 CCACACGGGCGTGTGCCCT
31977234 GTTTCAAGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.10, C:0.38, G:0.30, T:0.23
Consensus pattern (20 bp):
CCACACGGGCGTGTGCCCTT
Found at i:31983454 original size:46 final size:46
Alignment explanation
Indices: 31983384--31983502 Score: 152
Period size: 46 Copynumber: 2.6 Consensus size: 46
31983374 TGATATGTGT
* * *
31983384 GCTAGTGTAAGACATGTCTGGGACATTCATCAACCA-T-AGCATGAGA
1 GCTAGTGTAAGACATGTCTAGGACATGCATC-ACCATTAAG-ACGAGA
* **
31983430 GTTAGTGTAAGACATGTCTAGGACATGCATCGGCATTAAGACGAGA
1 GCTAGTGTAAGACATGTCTAGGACATGCATCACCATTAAGACGAGA
31983476 GCTAGTGTAAGACATGTCTAGGACATG
1 GCTAGTGTAAGACATGTCTAGGACATG
31983503 TATCGGCCTC
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
45 2 0.03
46 60 0.94
47 2 0.03
ACGTcount: A:0.32, C:0.17, G:0.27, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTAGGACATGCATCACCATTAAGACGAGA
Found at i:31983627 original size:49 final size:49
Alignment explanation
Indices: 31983570--31983695 Score: 173
Period size: 49 Copynumber: 2.6 Consensus size: 49
31983560 TGTGGTGTGT
* *
31983570 CAGTGTAAGACCTGTCTGGGGCATGGCATCGACAC-CAAAAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTCAAAAGATGAAAGC
*** *
31983619 CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGCTATATGAAAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCAAAAGATGAAAGC
31983668 CAGTGTAAGACCATGTCTGGGACATGGC
1 CAGTGTAAGACC-TGTCTGGGACATGGC
31983696 GTCGGCATCT
Statistics
Matches: 69, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
48 1 0.01
49 53 0.77
50 15 0.22
ACGTcount: A:0.28, C:0.23, G:0.29, T:0.20
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCAAAAGATGAAAGC
Found at i:31984902 original size:21 final size:21
Alignment explanation
Indices: 31984876--31984918 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
31984866 GTTATAATGA
31984876 CCACACGGGCGTGTTGCCCTT
1 CCACACGGGCGTGTTGCCCTT
31984897 CCACACGGGCGTGTTGCCCTT
1 CCACACGGGCGTGTTGCCCTT
31984918 C
1 C
31984919 TATATAGGCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.09, C:0.40, G:0.28, T:0.23
Consensus pattern (21 bp):
CCACACGGGCGTGTTGCCCTT
Found at i:31990742 original size:24 final size:24
Alignment explanation
Indices: 31990691--31990752 Score: 63
Period size: 24 Copynumber: 2.5 Consensus size: 24
31990681 AAATTTTATG
* *
31990691 AAAAATAAAAACT-CTTTAAAATTC
1 AAAAATAAAAA-TACTTTAAAAATA
*
31990715 AAAAATAAAAATATTTTAAAAATA
1 AAAAATAAAAATACTTTAAAAATA
*
31990739 AAAAAGAATAAATA
1 AAAAATAA-AAATA
31990753 AAAAATTTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
23 1 0.03
24 26 0.81
25 5 0.16
ACGTcount: A:0.68, C:0.05, G:0.02, T:0.26
Consensus pattern (24 bp):
AAAAATAAAAATACTTTAAAAATA
Found at i:31991400 original size:30 final size:30
Alignment explanation
Indices: 31991362--31991439 Score: 104
Period size: 30 Copynumber: 2.6 Consensus size: 30
31991352 AAAAATATTT
*
31991362 TTTATTTTTTAT-TTTTTTATTTTAATGAG
1 TTTATTTTTTATAATTTTTATTTTAATGAG
* *
31991391 TTTATTTTTTATAATTTTTATTTTAATAAA
1 TTTATTTTTTATAATTTTTATTTTAATGAG
*
31991421 TTATAATTTTTATAATTTT
1 TT-TATTTTTTATAATTTT
31991440 ATGTTTTTTA
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
29 12 0.28
30 16 0.37
31 15 0.35
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (30 bp):
TTTATTTTTTATAATTTTTATTTTAATGAG
Found at i:31991410 original size:16 final size:16
Alignment explanation
Indices: 31991360--31991451 Score: 66
Period size: 15 Copynumber: 5.9 Consensus size: 16
31991350 AAAAAAATAT
*
31991360 TTTTTATTTTTTAT-T
1 TTTTTATTTTTTATAA
* *
31991375 TTTTTA-TTTTAATGA
1 TTTTTATTTTTTATAA
*
31991390 -GTTTATTTTTTATAA
1 TTTTTATTTTTTATAA
*
31991405 TTTTTA-TTTTAATAA
1 TTTTTATTTTTTATAA
* * *
31991420 ATTATAATTTTTATAA
1 TTTTTATTTTTTATAA
*
31991436 TTTTATGTTTTTTATA
1 TTTT-TATTTTTTATA
31991452 TAAAAAAATT
Statistics
Matches: 58, Mismatches: 14, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
14 10 0.17
15 25 0.43
16 14 0.24
17 9 0.16
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (16 bp):
TTTTTATTTTTTATAA
Found at i:31991942 original size:28 final size:28
Alignment explanation
Indices: 31991880--31991942 Score: 67
Period size: 27 Copynumber: 2.2 Consensus size: 28
31991870 TATGTATATT
31991880 AAATAATAAAATATAAATTAAAATTATA
1 AAATAATAAAATATAAATTAAAATTATA
* * *
31991908 TATTAAT-AAATAGT-ATTTAAAATTACTA
1 AAATAATAAAATA-TAAATTAAAATTA-TA
31991936 AAATAAT
1 AAATAAT
31991943 TGTATTACAT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
27 15 0.54
28 13 0.46
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.37
Consensus pattern (28 bp):
AAATAATAAAATATAAATTAAAATTATA
Found at i:32000270 original size:47 final size:47
Alignment explanation
Indices: 32000152--32000364 Score: 230
Period size: 47 Copynumber: 4.7 Consensus size: 47
32000142 GAAAAAAAGT
* *
32000152 GTGGTGCTAAGTGGATATACCACGATTAC-TCATATTGATACATGTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTACAT-ATATTGATTCAT-TAAC
*
32000200 GTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCATTAAC
** * * *
32000247 GTGGTGAAAAGTGAATATACCACGGTTA-A-ACA-TG------TAAT
1 GTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCATTAAC
* *
32000285 GTGGTGCTAAGTGGATATGCCACAGTTACATATATTGATTCATTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCATTAAC
* *
32000332 GTGGTGTTAAGTGGATATACCACGGTTAAATAT
1 GTGGTGCTAAGTGGATATACCACGGTTACATAT
32000365 GTAACGTGGT
Statistics
Matches: 135, Mismatches: 20, Indels: 21
0.77 0.11 0.12
Matches are distributed among these distances:
38 26 0.19
39 1 0.01
40 2 0.01
41 2 0.01
44 2 0.01
45 2 0.01
46 1 0.01
47 60 0.44
48 38 0.28
49 1 0.01
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.32
Consensus pattern (47 bp):
GTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCATTAAC
Found at i:32000334 original size:85 final size:85
Alignment explanation
Indices: 32000191--32000397 Score: 351
Period size: 85 Copynumber: 2.4 Consensus size: 85
32000181 TCATATTGAT
32000191 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGAAA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGAAA
32000256 AGTGAATATACCACGGTTAA
66 AGTGAATATACCACGGTTAA
* * **
32000276 ACATGTAATGTGGTGCTAAGTGGATATGCCACAGTTACATATATTGATTCATTAACGTGGTGTTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGAAA
*
32000341 AGTGGATATACCACGGTTAA
66 AGTGAATATACCACGGTTAA
* *
32000361 ATATGTAACGTGGTGTTAAGTGGATATGCCACGGTTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTA
32000398 TACATGTTAA
Statistics
Matches: 113, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
85 113 1.00
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.31
Consensus pattern (85 bp):
ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGAAA
AGTGAATATACCACGGTTAA
Found at i:32003340 original size:3 final size:3
Alignment explanation
Indices: 32003332--32003357 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
32003322 ATTTCAATTT
32003332 TCA TCA TCA TCA TCA TCA TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TC
32003358 GTATATTCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.35, G:0.00, T:0.35
Consensus pattern (3 bp):
TCA
Found at i:32004951 original size:60 final size:58
Alignment explanation
Indices: 32004867--32005020 Score: 168
Period size: 60 Copynumber: 2.6 Consensus size: 58
32004857 TTGGCATTTT
* * * *
32004867 CCTATGCTTTTTTTGTCCAATTTGGTACCTAAATTTGACAATTT-TTCCTATTTTGGTA
1 CCTAAGCTTTTTTTGTTCAATTTGGTACCTAAATTTGACAATTTCTT-CTAATTTGGCA
* * * * * *
32004925 GCTAAGCTTTTTTGGTGTTCAATTTGGCACCTGAACTTGACACTTTCTTCTAATTTGGCC
1 CCTAAGCTTTTTT--TGTTCAATTTGGTACCTAAATTTGACAATTTCTTCTAATTTGGCA
*
32004985 CCTAAGC-TTTTTTGTTCAATTTGGTAGCTAAATTTG
1 CCTAAGCTTTTTTTGTTCAATTTGGTACCTAAATTTG
32005021 TCAAATAGTA
Statistics
Matches: 78, Mismatches: 15, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
57 20 0.26
58 11 0.14
59 5 0.06
60 40 0.51
61 2 0.03
ACGTcount: A:0.20, C:0.18, G:0.16, T:0.46
Consensus pattern (58 bp):
CCTAAGCTTTTTTTGTTCAATTTGGTACCTAAATTTGACAATTTCTTCTAATTTGGCA
Found at i:32005572 original size:26 final size:27
Alignment explanation
Indices: 32005543--32005594 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
32005533 ATTACTATGT
* *
32005543 TTAAGTATCAAATTAAATA-AAAAAAC
1 TTAAGTACCAAATTAAAAAGAAAAAAC
*
32005569 TTAAGTACCAAGTTAAAAAGAAAAAA
1 TTAAGTACCAAATTAAAAAGAAAAAA
32005595 AATCTGAAGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 16 0.73
27 6 0.27
ACGTcount: A:0.62, C:0.08, G:0.08, T:0.23
Consensus pattern (27 bp):
TTAAGTACCAAATTAAAAAGAAAAAAC
Found at i:32006069 original size:21 final size:22
Alignment explanation
Indices: 32006044--32006096 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 22
32006034 TTCACTGTTG
*
32006044 TTTTGTTATTG-TTTGTTGCTA
1 TTTTGTTATTGTTTTGTTGCCA
*
32006065 TTTTGATATTGTTTTGTTGCCA
1 TTTTGTTATTGTTTTGTTGCCA
*
32006087 TTTAGTTATT
1 TTTTGTTATT
32006097 ATATTACTAC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
21 10 0.37
22 17 0.63
ACGTcount: A:0.13, C:0.06, G:0.17, T:0.64
Consensus pattern (22 bp):
TTTTGTTATTGTTTTGTTGCCA
Found at i:32006916 original size:10 final size:10
Alignment explanation
Indices: 32006901--32006925 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
32006891 AAGAACTATG
32006901 ACATATTTTA
1 ACATATTTTA
32006911 ACATATTTTA
1 ACATATTTTA
32006921 ACATA
1 ACATA
32006926 AATTAACTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.44, C:0.12, G:0.00, T:0.44
Consensus pattern (10 bp):
ACATATTTTA
Found at i:32007402 original size:15 final size:15
Alignment explanation
Indices: 32007384--32007421 Score: 76
Period size: 15 Copynumber: 2.5 Consensus size: 15
32007374 TAATAATATA
32007384 TAATGTGAAATTGAT
1 TAATGTGAAATTGAT
32007399 TAATGTGAAATTGAT
1 TAATGTGAAATTGAT
32007414 TAATGTGA
1 TAATGTGA
32007422 TCATATCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.21, T:0.39
Consensus pattern (15 bp):
TAATGTGAAATTGAT
Found at i:32010937 original size:38 final size:38
Alignment explanation
Indices: 32010883--32010996 Score: 120
Period size: 38 Copynumber: 3.0 Consensus size: 38
32010873 GCGTACCATC
** * * * *
32010883 ATTGTTGAACCAAATACATGTTAAACGTGCCTATTGTT
1 ATTGTTGAACTGAATACATGTTAAACATACCTACTATT
* *
32010921 ATTGTTGAACTGAATACATGATAAACATATCTACTATT
1 ATTGTTGAACTGAATACATGTTAAACATACCTACTATT
* * **
32010959 ATTGTTAAACTGAATACATGTTAAGCATGTCTACTATT
1 ATTGTTGAACTGAATACATGTTAAACATACCTACTATT
32010997 TCTATACTGA
Statistics
Matches: 64, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 64 1.00
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38
Consensus pattern (38 bp):
ATTGTTGAACTGAATACATGTTAAACATACCTACTATT
Found at i:32012655 original size:40 final size:40
Alignment explanation
Indices: 32012611--32012802 Score: 210
Period size: 40 Copynumber: 4.8 Consensus size: 40
32012601 ATAACCACAA
* * *
32012611 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* *
32012651 GCACAAATGCCTTCGGGTCTTAGCCCAGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* *
32012691 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-AC-C
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * *
32012730 AGCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 -GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
32012771 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
32012803 CATTCAAATG
Statistics
Matches: 138, Mismatches: 11, Indels: 7
0.88 0.07 0.04
Matches are distributed among these distances:
39 2 0.01
40 132 0.96
41 4 0.03
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:32018985 original size:24 final size:24
Alignment explanation
Indices: 32018950--32018996 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
32018940 AGAAATAATC
* * *
32018950 TTTCAATTAAACTCTGTTTATTTG
1 TTTCAATCAAACACTGATTATTTG
32018974 TTTCAATCAAACACTGATTATTT
1 TTTCAATCAAACACTGATTATTT
32018997 TAGATTATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.30, C:0.15, G:0.06, T:0.49
Consensus pattern (24 bp):
TTTCAATCAAACACTGATTATTTG
Found at i:32023761 original size:14 final size:14
Alignment explanation
Indices: 32023742--32023768 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
32023732 CTACTTCAAG
32023742 CTTACTCCTCAACC
1 CTTACTCCTCAACC
32023756 CTTACTCCTCAAC
1 CTTACTCCTCAAC
32023769 TTGTCAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.48, G:0.00, T:0.30
Consensus pattern (14 bp):
CTTACTCCTCAACC
Found at i:32025973 original size:25 final size:26
Alignment explanation
Indices: 32025930--32025983 Score: 83
Period size: 25 Copynumber: 2.1 Consensus size: 26
32025920 TTAAATTTTA
*
32025930 AAATAATATTTATAGTAATATTAAAT
1 AAATAATAATTATAGTAATATTAAAT
*
32025956 AAAT-ATAATTATATTAATATTAAAT
1 AAATAATAATTATAGTAATATTAAAT
32025981 AAA
1 AAA
32025984 AATCCCCCAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
25 22 0.85
26 4 0.15
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (26 bp):
AAATAATAATTATAGTAATATTAAAT
Found at i:32028240 original size:59 final size:58
Alignment explanation
Indices: 32028109--32028245 Score: 138
Period size: 59 Copynumber: 2.3 Consensus size: 58
32028099 TATTTTATTA
* * * *
32028109 TATATAAATATATAGCATATGCATGCTTTGATTGGTTTAATGCATGTTGTAGTTTCGTATG
1 TATATAAATATA-A-TATATACATGCTTTGATTCGTTTAATGCATGTTGTA-TTTCGAATG
*
32028170 TATA-AATATATAATATATACATGCTTTGATTCGTTTAATGCATGTTAGT-TTTGGAAAAT-
1 TATATAA-ATATAATATATACATGCTTTGATTCGTTTAATGCATGTT-GTATTTCG--AATG
32028229 TATATAAATAT-ATATAT
1 TATATAAATATAATATAT
32028246 GATTATCTTT
Statistics
Matches: 66, Mismatches: 5, Indels: 13
0.79 0.06 0.15
Matches are distributed among these distances:
58 10 0.15
59 38 0.58
60 9 0.14
61 9 0.14
ACGTcount: A:0.34, C:0.07, G:0.15, T:0.45
Consensus pattern (58 bp):
TATATAAATATAATATATACATGCTTTGATTCGTTTAATGCATGTTGTATTTCGAATG
Found at i:32031949 original size:39 final size:39
Alignment explanation
Indices: 32031869--32032181 Score: 400
Period size: 39 Copynumber: 8.0 Consensus size: 39
32031859 CAAATCCAAT
* * *
32031869 CACCACCAC-AAAGCATGCGGGACTTTAAGCCCGGATATAA
1 CACCAGCACGAAAGCCTTCGGGAC-TT-AGCCCGGATATAA
* * *
32031909 TACCAGCAC-AAAGCCTACGAGACTTTAGCCCGGATATAA
1 CACCAGCACGAAAGCCTTCGGGAC-TTAGCCCGGATATAA
* *
32031948 TACCAGCAC-AAAGCCTACGGGACTTTAGCCCGGATATAA
1 CACCAGCACGAAAGCCTTCGGGAC-TTAGCCCGGATATAA
* *
32031987 CACCAGCACGAATGCCTTCGGGACTTAGCTCGGATATAA
1 CACCAGCACGAAAGCCTTCGGGACTTAGCCCGGATATAA
32032026 CACCAGCACGAATA-CCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAA-AGCCTTCGGGACTTAGCCCGGATATAA
* * *
32032065 CACCAGCACGAATGCCTTCGGAACTTAGCCTGGATATAA
1 CACCAGCACGAAAGCCTTCGGGACTTAGCCCGGATATAA
* * *
32032104 CACTAGCACGAATGCCTTCGAGACTTAGCCCGGATATAA
1 CACCAGCACGAAAGCCTTCGGGACTTAGCCCGGATATAA
*
32032143 CACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAAAGCCTTCGGGACTTAGCCCGGATATAA
32032182 TTCTCCATTA
Statistics
Matches: 249, Mismatches: 21, Indels: 7
0.90 0.08 0.03
Matches are distributed among these distances:
39 216 0.87
40 33 0.13
ACGTcount: A:0.32, C:0.29, G:0.21, T:0.19
Consensus pattern (39 bp):
CACCAGCACGAAAGCCTTCGGGACTTAGCCCGGATATAA
Found at i:32034858 original size:52 final size:51
Alignment explanation
Indices: 32034737--32034914 Score: 245
Period size: 51 Copynumber: 3.5 Consensus size: 51
32034727 CGGATACCCG
* * * * * *
32034737 GTGGCCTGCACATGGTACCACCCTTGT-ATCCAAAGCTACCTTCTACACCAA
1 GTGGCCTTCACATAGTACCACACTTGTGA-CCAAAGCTATCTTCTTCACAAA
32034788 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATC-TTCTTCACAAA
* *
32034840 GTGGCCTTCACATAGTACCACACTTGTGTCC-AAGCTATC-TCTTCTCAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTCTTCACAAA
32034889 GTGGCCTTCACATAGTACCACACTTG
1 GTGGCCTTCACATAGTACCACACTTG
32034915 AGGCACTAGT
Statistics
Matches: 117, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
49 35 0.30
51 42 0.36
52 40 0.34
ACGTcount: A:0.26, C:0.31, G:0.15, T:0.28
Consensus pattern (51 bp):
GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTCTTCACAAA
Found at i:32038343 original size:26 final size:26
Alignment explanation
Indices: 32038314--32038421 Score: 164
Period size: 26 Copynumber: 4.2 Consensus size: 26
32038304 TTATACAAAT
* *
32038314 TGATAATGGGTTAGGAAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
32038340 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
32038366 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
32038392 TGATAAT-GGTCTAGGTAAATGTTCCA
1 TGATAATGGGT-TAGGTAAATATTCCA
32038418 TGAT
1 TGAT
32038422 GGGCATTTCA
Statistics
Matches: 76, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
25 3 0.04
26 73 0.96
ACGTcount: A:0.34, C:0.08, G:0.23, T:0.34
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATATTCCA
Found at i:32041158 original size:16 final size:17
Alignment explanation
Indices: 32041117--32041158 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
32041107 GTGGAATGGG
32041117 TTTACAAAAACAAAGAT
1 TTTACAAAAACAAAGAT
*
32041134 TTT-CGAAAACAAA-AT
1 TTTACAAAAACAAAGAT
*
32041149 TTTATAAAAA
1 TTTACAAAAA
32041159 TGCGAAAAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
15 5 0.24
16 13 0.62
17 3 0.14
ACGTcount: A:0.57, C:0.10, G:0.05, T:0.29
Consensus pattern (17 bp):
TTTACAAAAACAAAGAT
Found at i:32045045 original size:17 final size:17
Alignment explanation
Indices: 32045003--32045045 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
32044993 TGTGGAATGG
*
32045003 TTTACAAAAACAAAGAT
1 TTTACAAAAACAAAAAT
*
32045020 TTT-CGAAAACAAAAAT
1 TTTACAAAAACAAAAAT
*
32045036 TTTATAAAAA
1 TTTACAAAAA
32045046 AATGCGAAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
16 14 0.67
17 7 0.33
ACGTcount: A:0.58, C:0.09, G:0.05, T:0.28
Consensus pattern (17 bp):
TTTACAAAAACAAAAAT
Found at i:32046132 original size:26 final size:26
Alignment explanation
Indices: 32046103--32046209 Score: 155
Period size: 26 Copynumber: 4.2 Consensus size: 26
32046093 TTATACAAAT
* *
32046103 TGATAATGGGTTAGGAAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
32046129 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
32046155 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
32046181 TGATAAT--GTCTAGGTAAATGTTCCA
1 TGATAATGGGT-TAGGTAAATATTCCA
32046206 TGAT
1 TGAT
32046210 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
24 2 0.03
25 18 0.24
26 55 0.73
ACGTcount: A:0.35, C:0.08, G:0.22, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATATTCCA
Found at i:32047789 original size:21 final size:21
Alignment explanation
Indices: 32047763--32047802 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
32047753 CATGTTTGAC
32047763 TGTTGTTATTA-CTGCATGCCA
1 TGTTGTTATTATCTG-ATGCCA
32047784 TGTTGTTATTATCTGATGC
1 TGTTGTTATTATCTGATGC
32047803 ATGGGATTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.17, C:0.15, G:0.20, T:0.47
Consensus pattern (21 bp):
TGTTGTTATTATCTGATGCCA
Found at i:32048949 original size:17 final size:17
Alignment explanation
Indices: 32048907--32048949 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
32048897 GTGGAATGGG
*
32048907 TTTACAAAAACAAAGAT
1 TTTACAAAAACAAAAAT
*
32048924 TTT-CGAAAACAAAAAT
1 TTTACAAAAACAAAAAT
*
32048940 TTTATAAAAA
1 TTTACAAAAA
32048950 ATGCGAAAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
16 14 0.67
17 7 0.33
ACGTcount: A:0.58, C:0.09, G:0.05, T:0.28
Consensus pattern (17 bp):
TTTACAAAAACAAAAAT
Found at i:32052984 original size:26 final size:24
Alignment explanation
Indices: 32052965--32053058 Score: 109
Period size: 26 Copynumber: 3.8 Consensus size: 24
32052955 AAATACAAAT
**
32052965 TGATAATGGGTTAGGTAAATGTTCA
1 TGATAATGGGTTAGGTAAAT-ACCA
*
32052990 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATA--CCA
**
32053016 TGATAATGGGTTAGGTAAATTTCA
1 TGATAATGGGTTAGGTAAATACCA
32053040 TGATAAT-GGTTAGGTAAAT
1 TGATAATGGGTTAGGTAAAT
32053059 GTTCCATGAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
23 12 0.20
24 9 0.15
25 19 0.31
26 21 0.34
ACGTcount: A:0.35, C:0.04, G:0.24, T:0.36
Consensus pattern (24 bp):
TGATAATGGGTTAGGTAAATACCA
Found at i:32052997 original size:25 final size:26
Alignment explanation
Indices: 32052965--32053068 Score: 162
Period size: 25 Copynumber: 4.2 Consensus size: 26
32052955 AAATACAAAT
32052965 TGATAATGGGTTAGGTAAATGTT-CA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
32052990 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
32053016 TGATAATGGGTTAGGTAAAT-TT-CA
1 TGATAATGGGTTAGGTAAATGTTCCA
32053040 TGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
32053065 TGAT
1 TGAT
32053069 GGGCATTTCA
Statistics
Matches: 73, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
23 12 0.16
24 11 0.15
25 29 0.40
26 21 0.29
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:32053020 original size:51 final size:49
Alignment explanation
Indices: 32052965--32053068 Score: 181
Period size: 51 Copynumber: 2.1 Consensus size: 49
32052955 AAATACAAAT
32052965 TGATAATGGGTTAGGTAAATGTTCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAAT-TTCATGATAATGG-TTAGGTAAATATTCCA
*
32053016 TGATAATGGGTTAGGTAAATTTCATGATAATGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATTTCATGATAATGGTTAGGTAAATATTCCA
32053065 TGAT
1 TGAT
32053069 GGGCATTTCA
Statistics
Matches: 52, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
49 19 0.37
50 13 0.25
51 20 0.38
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.37
Consensus pattern (49 bp):
TGATAATGGGTTAGGTAAATTTCATGATAATGGTTAGGTAAATATTCCA
Found at i:32059818 original size:26 final size:26
Alignment explanation
Indices: 32059779--32059886 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
32059769 TTATACAAAT
*
32059779 TGATAATGGGTTAGGCAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
32059805 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
32059831 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
32059857 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
32059883 TGAT
1 TGAT
32059887 GGGCATTTCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:32063562 original size:51 final size:50
Alignment explanation
Indices: 32063485--32063662 Score: 214
Period size: 52 Copynumber: 3.5 Consensus size: 50
32063475 CGAATACCCG
* *
32063485 GTGGCCTGCACATAGTACCACCCTTGTAGTCAAAGCTACCTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGT-GTCAAAGCTACCTTCTTCACAAA
* * * * *
32063536 GTGGCTTTTACGTAGTACCACACTTGTGATCAAAGATATCTTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTG-TCAAAGCTA-CCTTCTTCACAAA
* * * *
32063588 GTGGCCTTCACATAGTACCACACTTGTGACCAAGCTATC-TCTTCTCAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCAAAGCTACCTTCTTCACAAA
*
32063637 ATGGCCTTCACATAGTACCACACTTG
1 GTGGCCTTCACATAGTACCACACTTG
32063663 AGGCACTAGT
Statistics
Matches: 108, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
49 34 0.31
50 1 0.01
51 36 0.33
52 37 0.34
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29
Consensus pattern (50 bp):
GTGGCCTTCACATAGTACCACACTTGTGTCAAAGCTACCTTCTTCACAAA
Found at i:32063604 original size:52 final size:52
Alignment explanation
Indices: 32063485--32063662 Score: 224
Period size: 51 Copynumber: 3.5 Consensus size: 52
32063475 CGAATACCCG
* * *
32063485 GTGGCCTGCACATAGTACCACCCTTGT-AGTCAAAGCTA-CCTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGA-TCAAAGCTATCTTTCTTCACAAA
* * * *
32063536 GTGGCTTTTACGTAGTACCACACTTGTGATCAAAGATATCTTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGATCAAAGCTATCTTTCTTCACAAA
*
32063588 GTGGCCTTCACATAGTACCACACTTGTGA-CCAAGCTATCTCTTC-TCA-AAA
1 GTGGCCTTCACATAGTACCACACTTGTGATCAAAGCTATCT-TTCTTCACAAA
32063638 -TGGCCTTCACATAGTACCACACTTG
1 GTGGCCTTCACATAGTACCACACTTG
32063663 AGGCACTAGT
Statistics
Matches: 112, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
49 25 0.22
50 3 0.03
51 42 0.38
52 42 0.38
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29
Consensus pattern (52 bp):
GTGGCCTTCACATAGTACCACACTTGTGATCAAAGCTATCTTTCTTCACAAA
Found at i:32064920 original size:44 final size:44
Alignment explanation
Indices: 32064857--32064967 Score: 186
Period size: 44 Copynumber: 2.5 Consensus size: 44
32064847 ATATGTACCT
32064857 ATACCATGGCCAGAAGCCAAATCAAGGTAGCTTATCCGAAATCTG
1 ATACCATGGCCA-AAGCCAAATCAAGGTAGCTTATCCGAAATCTG
* *
32064902 ATATCATGGCCAAAGCCAAATCAAGGTAGCTTATTCGAAATCTG
1 ATACCATGGCCAAAGCCAAATCAAGGTAGCTTATCCGAAATCTG
32064946 ATACCATGGCCCAAAGCCAAAT
1 ATACCATGG-CCAAAGCCAAAT
32064968 TAGTTGATAT
Statistics
Matches: 62, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
44 39 0.63
45 23 0.37
ACGTcount: A:0.37, C:0.24, G:0.18, T:0.21
Consensus pattern (44 bp):
ATACCATGGCCAAAGCCAAATCAAGGTAGCTTATCCGAAATCTG
Found at i:32077280 original size:18 final size:19
Alignment explanation
Indices: 32077254--32077293 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
32077244 ATATTTCTAT
*
32077254 TTATTTTTAATATTAT-AA
1 TTATATTTAATATTATCAA
32077272 TTATATTTAATATTATCAA
1 TTATATTTAATATTATCAA
32077291 TTA
1 TTA
32077294 ATTATATTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 15 0.75
19 5 0.25
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (19 bp):
TTATATTTAATATTATCAA
Found at i:32083335 original size:51 final size:52
Alignment explanation
Indices: 32083265--32083363 Score: 157
Period size: 51 Copynumber: 1.9 Consensus size: 52
32083255 TTACAAATGG
* *
32083265 TAAGAAAATATTATTAAATTATTT-AATTTTAATCTGTTAATTATTATGATGT
1 TAAGAAAATATTATTAAATTATTTAAATTTAAATAT-TTAATTATTATGATGT
32083317 TAAGAAAAT-TTATTAAATTATTTAAATTTAAATATTTAATTATTATG
1 TAAGAAAATATTATTAAATTATTTAAATTTAAATATTTAATTATTATG
32083364 CGGTTTAAAT
Statistics
Matches: 44, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
51 26 0.59
52 18 0.41
ACGTcount: A:0.43, C:0.01, G:0.06, T:0.49
Consensus pattern (52 bp):
TAAGAAAATATTATTAAATTATTTAAATTTAAATATTTAATTATTATGATGT
Found at i:32085273 original size:63 final size:63
Alignment explanation
Indices: 32085170--32085288 Score: 148
Period size: 63 Copynumber: 1.9 Consensus size: 63
32085160 ACTGATACAT
* ** *
32085170 TCATCACTAGTTTATTTTACACAAGCACCACAGTACGCACAATCATTCCCTACACCAACATAG
1 TCATCACCAGTTTATTTTACACAAGCACCACAACACGCACAACCATTCCCTACACCAACATAG
* * ** * *
32085233 TCATCACCATTTTATTTTCCACAAGCATTACAACATGCACAACCATTCCCTGCACC
1 TCATCACCAGTTTATTTTACACAAGCACCACAACACGCACAACCATTCCCTACACC
32085289 GACACATTCC
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
63 46 1.00
ACGTcount: A:0.33, C:0.34, G:0.07, T:0.27
Consensus pattern (63 bp):
TCATCACCAGTTTATTTTACACAAGCACCACAACACGCACAACCATTCCCTACACCAACATAG
Found at i:32085497 original size:30 final size:30
Alignment explanation
Indices: 32085461--32085522 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
32085451 CAGGGAGATG
*
32085461 CACTATGGTTGATTACAACACGGTCACAGT
1 CACTATGGTCGATTACAACACGGTCACAGT
*
32085491 CACTATGGTCGATTACGACACGGTCACAGT
1 CACTATGGTCGATTACAACACGGTCACAGT
32085521 CA
1 CA
32085523 TCTACGGAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (30 bp):
CACTATGGTCGATTACAACACGGTCACAGT
Done.