Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 101 of 352
Found at i:32093159 original size:41 final size:42
Alignment explanation
Indices: 32093072--32093161 Score: 110
Period size: 41 Copynumber: 2.2 Consensus size: 42
32093062 ACGTAGCCTG
*
32093072 CTAGGCTCAAGGCCTGAAACAAATACACTGGCACAAAACTTA
1 CTAGGCTCAAGGCCTGAAACAAATACACCGGCACAAAACTTA
* * * * * *
32093114 CTAGGCTCAAGGCTTGATAC-AATTCACCGGCACGAAGCTTC
1 CTAGGCTCAAGGCCTGAAACAAATACACCGGCACAAAACTTA
32093155 CTAGGCT
1 CTAGGCT
32093162 TAAAGCCTAA
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
41 23 0.56
42 18 0.44
ACGTcount: A:0.32, C:0.28, G:0.20, T:0.20
Consensus pattern (42 bp):
CTAGGCTCAAGGCCTGAAACAAATACACCGGCACAAAACTTA
Found at i:32098291 original size:15 final size:16
Alignment explanation
Indices: 32098273--32098312 Score: 55
Period size: 15 Copynumber: 2.5 Consensus size: 16
32098263 ATACATTTTC
32098273 ATAAACATCATTTAA-
1 ATAAACATCATTTAAG
*
32098288 ATAAATATCATTTAAG
1 ATAAACATCATTTAAG
32098304 ACTAAACAT
1 A-TAAACAT
32098313 ACCTCTTTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 14 0.67
16 1 0.05
17 6 0.29
ACGTcount: A:0.53, C:0.12, G:0.03, T:0.33
Consensus pattern (16 bp):
ATAAACATCATTTAAG
Found at i:32098716 original size:13 final size:13
Alignment explanation
Indices: 32098698--32098736 Score: 78
Period size: 13 Copynumber: 3.0 Consensus size: 13
32098688 AAGTAATCGT
32098698 ACACGGGCGTGTC
1 ACACGGGCGTGTC
32098711 ACACGGGCGTGTC
1 ACACGGGCGTGTC
32098724 ACACGGGCGTGTC
1 ACACGGGCGTGTC
32098737 CCTGCGGAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.15, C:0.31, G:0.38, T:0.15
Consensus pattern (13 bp):
ACACGGGCGTGTC
Found at i:32102497 original size:28 final size:27
Alignment explanation
Indices: 32102434--32102585 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
32102424 ATATTAAGTC
* * *
32102434 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
32102461 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
32102489 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
32102516 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
32102544 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
32102571 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32102586 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:32102518 original size:55 final size:55
Alignment explanation
Indices: 32102434--32102585 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
32102424 ATATTAAGTC
* * *
32102434 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
32102489 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
32102544 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
32102586 GCACAATTTA
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:32108819 original size:93 final size:93
Alignment explanation
Indices: 32108690--32108861 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
32108680 CGCCCATAAG
* ** * *
32108690 CGAACTCGGACTCAACTCATTGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
32108755 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
*
32108783 CGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
32108848 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
32108862 TCAACCATCC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:32108858 original size:46 final size:46
Alignment explanation
Indices: 32108683--32108858 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
32108673 TGTAACCCGC
* ** * *
32108683 CCATAAGCGAACTCGGACTCAACTCATTGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
32108729 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** * *
32108775 ACATCTCTCGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
32108822 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
32108859 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 66 0.62
47 31 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:32108877 original size:46 final size:45
Alignment explanation
Indices: 32108734--32108877 Score: 120
Period size: 46 Copynumber: 3.1 Consensus size: 45
32108724 CGCATCCATA
*
32108734 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTA-CATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATC-CT
* * *
32108783 --CGAACTCGAACTCAACTCAACGAGTTCGGA---CATTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCA-AC-CATCC-T
32108826 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCATCCT
32108873 AGTGA
1 AGTGA
32108878 CATGTCACTT
Statistics
Matches: 78, Mismatches: 7, Indels: 23
0.72 0.06 0.21
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 6 0.08
44 1 0.01
46 33 0.42
47 28 0.36
48 5 0.06
49 1 0.01
50 2 0.03
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCCT
Found at i:32111226 original size:29 final size:29
Alignment explanation
Indices: 32111187--32111274 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
32111177 CAAAGATAAC
*
32111187 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
32111216 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
32111245 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
32111275 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:32111245 original size:15 final size:15
Alignment explanation
Indices: 32111187--32111265 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
32111177 CAAAGATAAC
*
32111187 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
32111201 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
32111216 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
32111230 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
32111245 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
32111260 AAGAAA
1 AAGAAA
32111266 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:32111274 original size:15 final size:15
Alignment explanation
Indices: 32111198--32111274 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
32111188 AGAAAACCGA
32111198 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
32111213 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
32111227 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
32111241 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
32111257 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
32111272 ATA
1 ATA
32111275 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:32114306 original size:93 final size:93
Alignment explanation
Indices: 32114190--32114361 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
32114180 CGCCCATAAG
* * *
32114190 CGAACTCAGACTCAAATCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAAATCAACGAGCTCGGACATTCGCATCCATAAGTGAAATCGGACTCAACTCA
32114255 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
* * *
32114283 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAAATCGGACTCAACTCA
1 CGAACTCAGACTCAAATCAACGAGCTCGGACATTCGCATCCATAAGTGAAATCGGACTCAACTCA
*
32114348 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
32114362 TCAACCATCC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCAGACTCAAATCAACGAGCTCGGACATTCGCATCCATAAGTGAAATCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:32114358 original size:46 final size:46
Alignment explanation
Indices: 32114183--32114358 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
32114173 TGTAACCCGC
* * * * *
32114183 CCATAAGCGAACTCAGACTCAAATCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
32114229 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
32114275 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
32114322 CCATAAGTGAAATCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
32114359 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 66 0.62
47 32 0.30
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:32121977 original size:42 final size:43
Alignment explanation
Indices: 32121895--32122046 Score: 116
Period size: 42 Copynumber: 3.5 Consensus size: 43
32121885 TCCCAAACGT
32121895 GGTCTTACATGTAATCACATATCAATGCCACTATCCCAGACAG
1 GGTCTTACATGTAATCACATATCAATGCCACTATCCCAGACAG
* * * *
32121938 GGTCTTACATG-AA-CTCATATACAATGCCGA-TGTCTCAGACAT
1 GGTCTTACATGTAATCACATAT-CAATGCC-ACTATCCCAGACAG
* * * ** * *
32121980 GGTCTTACACGTAAATCAAAAATTGATGCCAATGTCCCAGAC-G
1 GGTCTTACATGT-AATCACATATCAATGCCACTATCCCAGACAG
*
32122023 TGGTCTTAC-TCGAAATCACATATC
1 -GGTCTTACAT-GTAATCACATATC
32122047 GAAATCCTAT
Statistics
Matches: 84, Mismatches: 17, Indels: 16
0.72 0.15 0.14
Matches are distributed among these distances:
41 6 0.07
42 28 0.33
43 21 0.25
44 25 0.30
45 4 0.05
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (43 bp):
GGTCTTACATGTAATCACATATCAATGCCACTATCCCAGACAG
Found at i:32126601 original size:46 final size:46
Alignment explanation
Indices: 32126483--32126656 Score: 206
Period size: 48 Copynumber: 3.7 Consensus size: 46
32126473 TGATGTGTGT
32126483 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATTTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATA--TAA
* * * *
32126531 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACGA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGA-TATAA
* * *
32126577 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGCGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATAT--AA
* *
32126625 GCTAGTGTAAGACCTGTTTGGGACATGGCATC
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATC
32126657 ACCTTGTTGT
Statistics
Matches: 109, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
45 1 0.01
46 37 0.34
48 65 0.60
49 6 0.06
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.25
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATAA
Found at i:32126647 original size:94 final size:95
Alignment explanation
Indices: 32126483--32126656 Score: 269
Period size: 94 Copynumber: 1.8 Consensus size: 95
32126473 TGATGTGTGT
* **
32126483 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATTTAAGCCAGTGTAAGACATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAAGCCAGTGTAAGACATGT
32126548 CTGGGACAT-GCATCGGCATTGAGACGAGA
66 CTGGGACATGGCATCGGCATTGAGACGAGA
* * * *
32126577 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGCGATATACAAGCTAGTGTAAGACCTGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAAGCCAGTGTAAGACATGT
*
32126642 TTGGGACATGGCATC
66 CTGGGACATGGCATC
32126657 ACCTTGTTGT
Statistics
Matches: 71, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
94 66 0.93
95 5 0.07
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.25
Consensus pattern (95 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAAGCCAGTGTAAGACATGT
CTGGGACATGGCATCGGCATTGAGACGAGA
Found at i:32126738 original size:49 final size:47
Alignment explanation
Indices: 32126486--32126748 Score: 177
Period size: 48 Copynumber: 5.6 Consensus size: 47
32126476 TGTGTGTGCT
* * *
32126486 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCT-TGAGAT-ATTTAAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTGT-AGATGA---GAGCC
* * * * *
32126534 AGTGTAAGACATGTCTGGGACAT-GCATCGGCAT-TGAGACGAGAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTGT-AGATGAGAGCC
* * * * * * *
32126580 AGTGTAAGACATGTTTGGGACAT-GCATCGGCCTCG-CGATATACAAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCT-GTAGAT-GA-GAGCC
* * * * *
32126628 AGTGTAAGACCTGTTTGGGACATGGCATC-ACCT-T-GTTGTGTGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTGTAGATGAGAGCC
32126672 AGTGTAAGACCTGTCTGGGACATGGCATCGACACTGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTG-TAGATGAGAGCC
*
32126721 AGTGTAAGACCTATCTGGGACATGGCAT
1 AGTGTAAGACCTGTCTGGGACATGGCAT
32126749 TGGCATCTTA
Statistics
Matches: 178, Mismatches: 25, Indels: 23
0.79 0.11 0.10
Matches are distributed among these distances:
44 29 0.16
45 2 0.01
46 40 0.22
47 1 0.01
48 67 0.38
49 39 0.22
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACCTGTAGATGAGAGCC
Found at i:32131080 original size:27 final size:27
Alignment explanation
Indices: 32131040--32131151 Score: 122
Period size: 27 Copynumber: 4.1 Consensus size: 27
32131030 AGGAAGCGTC
* *
32131040 CTGGTGGCTATGCCACAATTATTTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
32131067 CTGGTGGCTCTGCCACATATT-TCTG-T
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
*
32131093 CCTGGTGGCTCTGCCACGATTATCTGTAT
1 -CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
32131122 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
32131148 CTGG
1 CTGG
32131152 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
26 9 0.12
27 47 0.64
28 17 0.23
29 1 0.01
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:32131146 original size:54 final size:54
Alignment explanation
Indices: 32131037--32131151 Score: 151
Period size: 54 Copynumber: 2.1 Consensus size: 54
32131027 TGGAGGAAGC
* * *
32131037 GTCCTGGTGGCTATGCCACAATTATTTGATCTGGTGGCTCTGCCACATATTTCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCT
* * *
32131091 GTCCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCT
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCT
*
32131145 GTTCTGG
1 GTCCTGG
32131152 CAGCCATGCT
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
54 35 0.66
55 18 0.34
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.37
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCT
Found at i:32137145 original size:47 final size:47
Alignment explanation
Indices: 32137091--32137853 Score: 1014
Period size: 47 Copynumber: 16.1 Consensus size: 47
32137081 TTAGGATTTT
* * *
32137091 ATGTGATGAATGTG-A-ATGTATATATATGAGCTAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGA--TAAGGCCGAATGGCCA
*
32137138 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
32137185 ATGTGATGAAGGTGAACATGCACATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
32137232 ATGTGACGAATGTGAACATGCACATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
32137279 ATGTGACGAATGTGAACATGCACATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
32137326 ATGTGACGAATGTGAACATGCACATATGCACATATGTGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAACATG--C--AT----ATATGTGATAAGGCCGAATGGCCA
* *
32137381 ATGTGATAAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
32137428 ATGTGATGAATGTGGAA-GTGTATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
*
32137475 ATGTGACGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
32137522 ATGTGATAAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
32137569 ATGTGACGAATGTGAACATGCACATATGTGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
32137616 ATGTGATAAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
32137663 ATGTGATGAACGTGGAA-GTGTATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
32137710 ATGTGATTAATGTGAACATGCACATATGTGATAAGGCCGAATGGTCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
32137757 ATGTGATAAATGTGAACATGCATATATGTGATAAGGCAGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
32137804 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
32137851 ATG
1 ATG
32137854 CGAAATGCGT
Statistics
Matches: 639, Mismatches: 62, Indels: 30
0.87 0.08 0.04
Matches are distributed among these distances:
46 6 0.01
47 566 0.89
48 10 0.02
49 12 0.02
51 3 0.00
53 1 0.00
55 41 0.06
ACGTcount: A:0.34, C:0.13, G:0.28, T:0.25
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:32137912 original size:46 final size:46
Alignment explanation
Indices: 32137827--32137917 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
32137817 GGAAGTGTAT
* *
32137827 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGCGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATACGTATGAGATGG
* * * *
32137873 ATATGTGGTAAAGCCAAATGGCTACTGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATACGTATGAGATG
32137918 TGTATATATA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.33, C:0.10, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAATACGTATGAGATGG
Found at i:32140074 original size:37 final size:37
Alignment explanation
Indices: 32139974--32140076 Score: 163
Period size: 37 Copynumber: 2.8 Consensus size: 37
32139964 CGAATAGGCC
* * *
32139974 CCACATGTAGTTATCGGGTCTTACCCAGACAAAGTCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAGTCT
32140011 CCACACGTAGTCATCGGGTCTTACCCGGACATAA-TCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACA-AAGTCT
32140048 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
32140077 ATATATTTCC
Statistics
Matches: 62, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
37 60 0.97
38 2 0.03
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAGTCT
Found at i:32140276 original size:48 final size:48
Alignment explanation
Indices: 32140217--32140458 Score: 367
Period size: 48 Copynumber: 5.0 Consensus size: 48
32140207 ATATACACCC
* *
32140217 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * * *
32140265 ATCTCACACATATTTCACACTAGCCATTTGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
32140313 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
32140361 ATCTCATATATATTTCACATTAGCCATACGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
32140409 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
32140457 AT
1 AT
32140459 ATTTGTCTTG
Statistics
Matches: 177, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 177 1.00
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:32147149 original size:49 final size:47
Alignment explanation
Indices: 32147039--32147359 Score: 180
Period size: 46 Copynumber: 6.8 Consensus size: 47
32147029 AAATGCCAAT
** * * *
32147039 GCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGTCGAT
1 GCCATGTCCCAGACATGGTCTTACACTAACTCATCAATCAAGCCGAC
* * *
32147086 GCCATGTCCAAGACATAGTCTTACACTAACT-ATCAAAATCGAGGCCGAC
1 GCCATGTCCCAGACATGGTCTTACACTAACTCATC--AATC-AAGCCGAC
* * ** *
32147135 GCCATGTCCCAGACATGGTCTTACACTAGCTCTTGCATATCTGTGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTAACTCAT-CA-ATC-AAGCCGAC
* * * * * *
32147185 GCCATGTCCCAGACATTGTCTTACATTGACACATC--TCGTAGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTAACTCATCAATC-AAGCCGAC
* ** * * *
32147231 GCC-TATCCCAGACAT-GTCTTACACTGGCTTA-C-ATCTAGAGGCTGAT
1 GCCATGTCCCAGACATGGTCTTACACTAACTCATCAATC-A-A-GCCGAC
** *
32147277 G-CATACCCCAGACAT-GTCTTACACTAGCACTCATC--TCAATGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTA--ACTCATCAATCAA-GCCGAC
*
32147323 GCCATGTCCCAGACATGGTCTTACACTAGCTCA-CAAT
1 GCCATGTCCCAGACATGGTCTTACACTAACTCATCAAT
32147360 AACCCATACG
Statistics
Matches: 215, Mismatches: 42, Indels: 34
0.74 0.14 0.12
Matches are distributed among these distances:
43 1 0.00
44 14 0.07
45 14 0.07
46 52 0.24
47 41 0.19
48 19 0.09
49 36 0.17
50 37 0.17
51 1 0.00
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (47 bp):
GCCATGTCCCAGACATGGTCTTACACTAACTCATCAATCAAGCCGAC
Found at i:32155106 original size:46 final size:45
Alignment explanation
Indices: 32155039--32155159 Score: 127
Period size: 46 Copynumber: 2.6 Consensus size: 45
32155029 TGTGTGTGCT
* * *
32155039 AGTGTAAAACATGTTTGGGACATGCATCAGCCA-CAGTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GCCATCAG-ACGAGAGCC
* * * * **
32155085 AGTGTAAGACATGTCTGGGACATACGTCGGCATTGAGACGAGAGTT
1 AGTGTAAGACATGTCTGGGACATGCATCGCCA-TCAGACGAGAGCC
32155131 AGTGTAAGACATGTCTGGGACATGCATCG
1 AGTGTAAGACATGTCTGGGACATGCATCG
32155160 GCCTTGTGAT
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
45 3 0.05
46 57 0.92
47 2 0.03
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGCCATCAGACGAGAGCC
Found at i:32155281 original size:49 final size:48
Alignment explanation
Indices: 32155131--32155304 Score: 196
Period size: 44 Copynumber: 3.7 Consensus size: 48
32155121 GACGAGAGTT
* ** *
32155131 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCTTGTGATATACAAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGGCCTTGT-ATATGTAAGCC
* * * *
32155179 AGTGTAAGACCTATCTGGGACATGGCATCAG-CTTGT-TGTGT--GTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGGCCTTGTATATGTAAGCC
*
32155223 AGTGTAAGACCTGTCTGAGACATGGCATCGGCCTTGCTATATGTAAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGGCCTTG-TATATGTAAGCC
*
32155272 AGTGTAAGACCATGTCTGGGACATGGCGTCGGC
1 AGTGTAAGACC-TGTCTGGGACATGGCATCGGC
32155305 ATCTTAACCC
Statistics
Matches: 104, Mismatches: 15, Indels: 12
0.79 0.11 0.09
Matches are distributed among these distances:
44 29 0.28
45 4 0.04
46 3 0.03
47 4 0.04
48 26 0.25
49 19 0.18
50 19 0.18
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (48 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGGCCTTGTATATGTAAGCC
Found at i:32157473 original size:13 final size:13
Alignment explanation
Indices: 32157455--32157479 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32157445 ACAAACGATA
32157455 AAATTTTCACACG
1 AAATTTTCACACG
32157468 AAATTTTCACAC
1 AAATTTTCACAC
32157480 ATATAAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:32159013 original size:37 final size:37
Alignment explanation
Indices: 32158963--32159109 Score: 249
Period size: 37 Copynumber: 4.0 Consensus size: 37
32158953 CTTTAGCTCA
* *
32158963 GACAAAATCTCCACACGAAGTTATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
32159000 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
* *
32159037 GACATAATCTTCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
*
32159074 GACATAATCTCCACACGTAGTCATCGGGTCTTACCC
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCC
32159110 AGAATATATT
Statistics
Matches: 105, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 105 1.00
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (37 bp):
GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
Found at i:32159378 original size:47 final size:47
Alignment explanation
Indices: 32159317--32159501 Score: 289
Period size: 47 Copynumber: 3.9 Consensus size: 47
32159307 TACATATATT
* * * *
32159317 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
32159364 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
32159411 TCACATTGGCCATTTGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
**
32159458 TCACATTGGCCATTCGGCCTTATCACATATATGCACATTCACAT
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACAT
32159502 CACAATTATC
Statistics
Matches: 126, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 126 1.00
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:32159437 original size:22 final size:22
Alignment explanation
Indices: 32159410--32159485 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
32159400 GCTCACATTC
32159410 ATCACATTGGCCATTTGGCCTT
1 ATCACATTGGCCATTTGGCCTT
* ** *
32159432 ATCACATATATG-CATGTTCACATT
1 ATCACAT-T-GGCCAT-TTGGCCTT
*
32159456 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTTGGCCTT
32159479 ATCACAT
1 ATCACAT
32159486 ATATGCACAT
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 14 0.35
23 9 0.22
24 10 0.25
25 7 0.17
ACGTcount: A:0.25, C:0.28, G:0.13, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTTGGCCTT
Found at i:32162923 original size:6 final size:6
Alignment explanation
Indices: 32162912--32162984 Score: 51
Period size: 6 Copynumber: 11.8 Consensus size: 6
32162902 TATCAAAACT
* * * *
32162912 AGAATC AGAATC AGAATT AG-GTGAC AAAATC AGAATC AGAATC AGTATC
1 AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC AGAATC
*
32162961 AGGTAA-C AGAATC AAAATC AGAAT
1 A-G-AATC AGAATC AGAATC AGAAT
32162985 GTGAATGCAA
Statistics
Matches: 51, Mismatches: 10, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
5 3 0.06
6 42 0.82
7 4 0.08
8 2 0.04
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:32162947 original size:31 final size:31
Alignment explanation
Indices: 32162912--32162984 Score: 101
Period size: 31 Copynumber: 2.4 Consensus size: 31
32162902 TATCAAAACT
* *
32162912 AGAATCAGAATCAGAATTAGGTGACAAAATC
1 AGAATCAGAATCAGAATCAGGTAACAAAATC
* *
32162943 AGAATCAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAAAATC
*
32162974 AAAATCAGAAT
1 AGAATCAGAAT
32162985 GTGAATGCAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGGTAACAAAATC
Found at i:32163448 original size:27 final size:27
Alignment explanation
Indices: 32163405--32163736 Score: 461
Period size: 27 Copynumber: 12.3 Consensus size: 27
32163395 ACCTCATATC
* *
32163405 TCGGCAATTCTACCCTACAGTGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
*** *
32163432 TTAATAATTCTACCCTACAAGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
* * *
32163459 TCGGTATTTTTACCCTACAAGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
32163486 TCGGTAATTCTACCCTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
* *
32163513 TCAGTAATTCTACCCTACAAGGGTA-T
1 TCGGTAATTCTACCCTACAGGGGTATT
32163539 TCTGGTAATTCTACCCTACAGGGGTATT
1 TC-GGTAATTCTACCCTACAGGGGTATT
* *
32163567 GCGATAATTCTACCCTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
32163594 TCGGTAATTCTACCCTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
*
32163621 TCAGTAATTCTACCCTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
*
32163648 CCGGTAATTCTACCCTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
* *
32163675 TCAGTAATTCTACACTACA-GGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
* * *
32163701 GCGATAATTCTACCCTATAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
32163728 TCGGTAATT
1 TCGGTAATT
32163737 TTACAAGTTA
Statistics
Matches: 267, Mismatches: 35, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
26 24 0.09
27 241 0.90
28 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.34
Consensus pattern (27 bp):
TCGGTAATTCTACCCTACAGGGGTATT
Found at i:32163748 original size:27 final size:27
Alignment explanation
Indices: 32163718--32163794 Score: 127
Period size: 27 Copynumber: 2.9 Consensus size: 27
32163708 TTCTACCCTA
*
32163718 TAGGGGTATTTCGGTAATTTTACAAGT
1 TAGGGGTATTTTGGTAATTTTACAAGT
*
32163745 TAGGGGTATTTTAGTAATTTTACAAGT
1 TAGGGGTATTTTGGTAATTTTACAAGT
*
32163772 TAGGGGTGTTTTGGTAATTTTAC
1 TAGGGGTATTTTGGTAATTTTAC
32163795 TGATCGAGGG
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.25, C:0.05, G:0.26, T:0.44
Consensus pattern (27 bp):
TAGGGGTATTTTGGTAATTTTACAAGT
Found at i:32163870 original size:27 final size:27
Alignment explanation
Indices: 32163848--32164127 Score: 425
Period size: 27 Copynumber: 10.4 Consensus size: 27
32163838 AATAATTTTG
* *
32163848 TAAATCGAGGATAAAACAGTAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTA
32163875 TAAATCGAGGGTAAAACGGTAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTA
*
32163902 TAAATCGAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTA
* *
32163929 TAAATCGAGGGTAAAACAGTAATTCTG
1 TAAATCGAGGGTAAAACGGTAATTCTA
**
32163956 TAAATCGAGGGTAAAATAGTAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTA
*
32163983 TAAATCGAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTA
* * *
32164010 TAAATCAAGGGTAAAACGGTAATTTTG
1 TAAATCGAGGGTAAAACGGTAATTCTA
32164037 TAAATCGAGGGTAAAACGGTAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTA
* *
32164064 TAAATCGAGGGTAAAACGGTAATTTTG
1 TAAATCGAGGGTAAAACGGTAATTCTA
**
32164091 TAAATCGAGGGTAAAATAGTAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTA
32164118 TAAATCGAGG
1 TAAATCGAGG
32164128 ATATTTGCGT
Statistics
Matches: 231, Mismatches: 22, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 231 1.00
ACGTcount: A:0.42, C:0.09, G:0.21, T:0.28
Consensus pattern (27 bp):
TAAATCGAGGGTAAAACGGTAATTCTA
Found at i:32164169 original size:27 final size:27
Alignment explanation
Indices: 32163840--32164171 Score: 369
Period size: 27 Copynumber: 12.3 Consensus size: 27
32163830 GGTATTTCAA
* * **
32163840 TAATTTTGTAAATCGAGGATAAAACAG
1 TAATTTTATAAATCGAGGGTAAAATGG
* *
32163867 TAATTCTATAAATCGAGGGTAAAACGG
1 TAATTTTATAAATCGAGGGTAAAATGG
*
32163894 TAATTCTATAAATCGAGGGTAAAATGG
1 TAATTTTATAAATCGAGGGTAAAATGG
* **
32163921 TAATTCTATAAATCGAGGGTAAAACAG
1 TAATTTTATAAATCGAGGGTAAAATGG
* * *
32163948 TAATTCTGTAAATCGAGGGTAAAATAG
1 TAATTTTATAAATCGAGGGTAAAATGG
*
32163975 TAATTCTATAAATCGAGGGTAAAATGG
1 TAATTTTATAAATCGAGGGTAAAATGG
* * *
32164002 TAATTCTATAAATCAAGGGTAAAACGG
1 TAATTTTATAAATCGAGGGTAAAATGG
* *
32164029 TAATTTTGTAAATCGAGGGTAAAACGG
1 TAATTTTATAAATCGAGGGTAAAATGG
* *
32164056 TAATTCTATAAATCGAGGGTAAAACGG
1 TAATTTTATAAATCGAGGGTAAAATGG
* *
32164083 TAATTTTGTAAATCGAGGGTAAAATAG
1 TAATTTTATAAATCGAGGGTAAAATGG
* * **
32164110 TAATTCTATAAATCGAGGAT-ATTTGCG
1 TAATTTTATAAATCGAGGGTAAAATG-G
* ***
32164137 TAATTTTATAAATCGGGGGTACTTTGG
1 TAATTTTATAAATCGAGGGTAAAATGG
32164164 TAATTTTA
1 TAATTTTA
32164172 CAAGTCGAAG
Statistics
Matches: 271, Mismatches: 32, Indels: 4
0.88 0.10 0.01
Matches are distributed among these distances:
26 2 0.01
27 265 0.98
28 4 0.01
ACGTcount: A:0.39, C:0.08, G:0.21, T:0.31
Consensus pattern (27 bp):
TAATTTTATAAATCGAGGGTAAAATGG
Found at i:32164184 original size:27 final size:28
Alignment explanation
Indices: 32164109--32164196 Score: 69
Period size: 27 Copynumber: 3.2 Consensus size: 28
32164099 GGGTAAAATA
* *
32164109 GTAATTCTATAAATCG-AGGATA-TTTGC
1 GTAATTTTACAAATCGAAGG-TACTTTGC
* **
32164136 GTAATTTTATAAATCGGGGGTACTTTG-
1 GTAATTTTACAAATCGAAGGTACTTTGC
*
32164163 GTAATTTTACAAGTCGAAGGTA-TTT-C
1 GTAATTTTACAAATCGAAGGTACTTTGC
32164189 AGTAATTT
1 -GTAATTT
32164197 GGTAAACTAA
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
26 3 0.06
27 42 0.82
28 6 0.12
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (28 bp):
GTAATTTTACAAATCGAAGGTACTTTGC
Found at i:32172520 original size:42 final size:43
Alignment explanation
Indices: 32172401--32172522 Score: 122
Period size: 44 Copynumber: 2.8 Consensus size: 43
32172391 CCTAGGATTC
* ** * *
32172401 CGATGTGTGATTTCGTGTAAGACCATGTCTGGGATGTTGGCAT
1 CGATTTGTGATTTCGTGTAAGACCATGTCTGGGACATCGACAT
* * * *
32172444 CGGTTTGAGATTTACGTGTAAGACCATCTTTGGGACATCGACAT
1 CGATTTGTGATTT-CGTGTAAGACCATGTCTGGGACATCGACAT
*
32172488 C-ATATT-TGATTTCGTGTAAGACCCTGTCTGGGACA
1 CGAT-TTGTGATTTCGTGTAAGACCATGTCTGGGACA
32172523 GTGGCATTGA
Statistics
Matches: 63, Mismatches: 14, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
42 20 0.32
43 16 0.25
44 27 0.43
ACGTcount: A:0.22, C:0.17, G:0.27, T:0.34
Consensus pattern (43 bp):
CGATTTGTGATTTCGTGTAAGACCATGTCTGGGACATCGACAT
Found at i:32178603 original size:50 final size:50
Alignment explanation
Indices: 32178528--32178964 Score: 548
Period size: 50 Copynumber: 8.9 Consensus size: 50
32178518 CATGATACTG
* *
32178528 GAGATATGAGAGCTAGTGTAAGACCATATCTGGGACATGGCATCAACCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTC
* *
32178578 GAGATATGAGAGCTAGTGTAAGACCATGTTTGGGACAAGGCATCAGCCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTC
* **
32178628 GAGATATGAGAACTAGTGTAAGACCATGTCTATGACATGGCATCAGCCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTC
32178678 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTC
* *
32178728 GAGATATGAGAGCTAGAGTAAGACCATGTCTAGGACATGGCATCAGCCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTC
* * *
32178778 GAGATATGAGAGCTAGTGTAAGACCTTGTCTGGGACATGACATC-GGCT-
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTC
* * * * * * *
32178826 -TGATATGTG-TC-AGTGTAAGACCATGTTTGGTACATGACATCAACCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTC
* * *
32178873 GATATACGAGAG-TCAGTGTAAGACCATGTCTGGGACATGGCATC-GACT-
1 GAGATATGAGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTC
** * * * * *
32178921 TTGATGTGTGAGCCAGTGTAAGACCATGTCCGAGACATGGCATC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
32178965 GACACCTTAC
Statistics
Matches: 334, Mismatches: 46, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
45 27 0.08
46 3 0.01
47 7 0.02
48 39 0.12
49 5 0.01
50 253 0.76
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (50 bp):
GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTC
Found at i:32179986 original size:27 final size:26
Alignment explanation
Indices: 32179951--32180059 Score: 119
Period size: 27 Copynumber: 4.0 Consensus size: 26
32179941 AGCATGGCTG
* *
32179951 CCAGAACAGATGATGTGACAGAGTCA
1 CCAGAACAGATAATGTGACAGAGCCA
*
32179977 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGACAGAGCCA
*
32180005 CCAGAACAGATATATGTGCCAGAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCA
* * *
32180032 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGACAGAGCCA
32180059 C
1 C
32180060 TAGGACGCTT
Statistics
Matches: 72, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 6 0.08
27 49 0.68
28 17 0.24
ACGTcount: A:0.36, C:0.24, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGACAGAGCCA
Found at i:32180015 original size:54 final size:54
Alignment explanation
Indices: 32179951--32180059 Score: 157
Period size: 54 Copynumber: 2.0 Consensus size: 54
32179941 AGCATGGCTG
*
32179951 CCAGAACAGAT-GATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATAGATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * *
32180005 CCAGAACAGATATATGTGCCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAGATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
32180059 C
1 C
32180060 TAGGACGCTT
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
54 31 0.63
55 18 0.37
ACGTcount: A:0.36, C:0.24, G:0.24, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATAGATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:32186333 original size:42 final size:43
Alignment explanation
Indices: 32186272--32186381 Score: 127
Period size: 42 Copynumber: 2.6 Consensus size: 43
32186262 GATTCGAGAT
*
32186272 TTACATGTAAGACCATGTCTGGGACA-TCAGCATCG-TATTTGA
1 TTACATGTAAGACCCTGTCTGGGACAGT-AGCATCGATATTTGA
* * * * *
32186314 TTTCGTGTAAGACCCTGTCTAGGATAGTGGCATCGATATTTGA
1 TTACATGTAAGACCCTGTCTGGGACAGTAGCATCGATATTTGA
32186357 TTACATGTAAGACCAC-GTCTGGGAC
1 TTACATGTAAGACC-CTGTCTGGGAC
32186382 GTTGGCATTG
Statistics
Matches: 55, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
42 27 0.49
43 27 0.49
44 1 0.02
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (43 bp):
TTACATGTAAGACCCTGTCTGGGACAGTAGCATCGATATTTGA
Found at i:32186355 original size:43 final size:42
Alignment explanation
Indices: 32186217--32186370 Score: 125
Period size: 43 Copynumber: 3.6 Consensus size: 42
32186207 CATAGGATTT
** *
32186217 TCGATATGTGATTTTGTGTAAG-CCCACGTCTAGGACATTGGCA
1 TCGATATGTGATTTCATGTAAGACCC-TGTCTAGGACA-TGGCA
* * * *
32186260 TCGAT-TCGAGATTTACATGTAAGACCATGTCTGGGACATCAGCA
1 TCGATAT-GTGATTT-CATGTAAGACCCTGTCTAGGACAT-GGCA
* * *
32186304 TCG-TATTTGATTTCGTGTAAGACCCTGTCTAGGATAGTGGCA
1 TCGATATGTGATTTCATGTAAGACCCTGTCTAGGACA-TGGCA
* *
32186346 TCGATATTTGATTACATGTAAGACC
1 TCGATATGTGATTTCATGTAAGACC
32186371 ACGTCTGGGA
Statistics
Matches: 88, Mismatches: 16, Indels: 14
0.75 0.14 0.12
Matches are distributed among these distances:
42 26 0.30
43 38 0.43
44 22 0.25
45 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.32
Consensus pattern (42 bp):
TCGATATGTGATTTCATGTAAGACCCTGTCTAGGACATGGCA
Found at i:32186388 original size:43 final size:43
Alignment explanation
Indices: 32186233--32186389 Score: 149
Period size: 43 Copynumber: 3.7 Consensus size: 43
32186223 TGTGATTTTG
* **
32186233 TGTAAGCCCACGTCTAGGACATTGGCATCGAT-TCGAGATTTACA
1 TGTAAGACCACGTCTAGGACATTGGCATCGATAT-TTGA-TTACA
* * ** * *
32186277 TGTAAGACCATGTCTGGGACATCAGCATCG-TATTTGATTTCG
1 TGTAAGACCACGTCTAGGACATTGGCATCGATATTTGATTACA
* *
32186319 TGTAAGACC-CTGTCTAGGATAGTGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTAGGACATTGGCATCGATATTTGATTACA
* *
32186362 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTAGGACATTGGCAT
32186390 TGTATGAGAT
Statistics
Matches: 88, Mismatches: 21, Indels: 9
0.75 0.18 0.08
Matches are distributed among these distances:
42 26 0.30
43 35 0.40
44 27 0.31
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (43 bp):
TGTAAGACCACGTCTAGGACATTGGCATCGATATTTGATTACA
Found at i:32190716 original size:87 final size:87
Alignment explanation
Indices: 32190568--32190743 Score: 307
Period size: 87 Copynumber: 2.0 Consensus size: 87
32190558 ATGGATGTTA
*
32190568 GAGGGTGACCAAAGGCTTGGAAAATAGCCTAACACGGTCCACATGGGTAGACACACAGGCTTGTG
1 GAGGGTGACCAAAGGATTGGAAAATAGCCTAACACGGTCCACATGGGTAGACACACAGGCTTGTG
* *
32190633 TTTAGGCTGTGTGTGACACACG
66 TCTAGGCCGTGTGTGACACACG
* *
32190655 GAGGGTGACCAAAGGATTGGAAAATAGCCTAACATGGTCCACATGGGTAGACACACGGGCTTGTG
1 GAGGGTGACCAAAGGATTGGAAAATAGCCTAACACGGTCCACATGGGTAGACACACAGGCTTGTG
32190720 TCTAGGCCGTGTGTGACACACG
66 TCTAGGCCGTGTGTGACACACG
32190742 GA
1 GA
32190744 TCACCCCATG
Statistics
Matches: 84, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
87 84 1.00
ACGTcount: A:0.28, C:0.20, G:0.32, T:0.20
Consensus pattern (87 bp):
GAGGGTGACCAAAGGATTGGAAAATAGCCTAACACGGTCCACATGGGTAGACACACAGGCTTGTG
TCTAGGCCGTGTGTGACACACG
Found at i:32211381 original size:42 final size:42
Alignment explanation
Indices: 32211282--32211386 Score: 158
Period size: 42 Copynumber: 2.5 Consensus size: 42
32211272 AGACACACGT
* *
32211282 GCGTGTGTCTAGCCCTTGTGTGACACACAGTCTACCCCATGG
1 GCGTGTGTCTAGGCCGTGTGTGACACACAGTCTACCCCATGG
*
32211324 GCGTGTGTCTAGGCCGTGTGTGACACACGGTCTACCCCATGG
1 GCGTGTGTCTAGGCCGTGTGTGACACACAGTCTACCCCATGG
*
32211366 GCGTGTAGT-TCGGCCGTGTGT
1 GCGTGT-GTCTAGGCCGTGTGT
32211387 CCCTTGCATG
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
42 56 0.97
43 2 0.03
ACGTcount: A:0.13, C:0.28, G:0.32, T:0.27
Consensus pattern (42 bp):
GCGTGTGTCTAGGCCGTGTGTGACACACAGTCTACCCCATGG
Found at i:32218226 original size:45 final size:49
Alignment explanation
Indices: 32218169--32218281 Score: 137
Period size: 50 Copynumber: 2.4 Consensus size: 49
32218159 GTGTAAGATG
*
32218169 TGTCTAGGACAT-GCATCGGCTAT-GAGATGT-G-TC-AGTGTAAGACCA
1 TGTCTAGAACATGGCATCGG-TATGGAGATGTAGATCTAGTGTAAGACCA
*
32218214 TGTCTAGAACATGGCATCGGTATGGATATGTGAGATCTAGTGTAAGACCA
1 TGTCTAGAACATGGCATCGGTATGGAGATGT-AGATCTAGTGTAAGACCA
* *
32218264 TGTCTGGGACATGGCATC
1 TGTCTAGAACATGGCATC
32218282 AGCCTCGGTG
Statistics
Matches: 58, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
45 14 0.24
46 13 0.22
48 1 0.02
49 2 0.03
50 28 0.48
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (49 bp):
TGTCTAGAACATGGCATCGGTATGGAGATGTAGATCTAGTGTAAGACCA
Found at i:32219809 original size:23 final size:24
Alignment explanation
Indices: 32219783--32219834 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 24
32219773 TGAATCGGTT
*
32219783 TTTGAGATGATGAAAT-GGT-ATAA
1 TTTGAGAT-ATAAAATAGGTGATAA
*
32219806 TTTGAGGTATAAAATAGGTGATAA
1 TTTGAGATATAAAATAGGTGATAA
32219830 TTTGA
1 TTTGA
32219835 AAAGTAAATG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 6 0.24
23 10 0.40
24 9 0.36
ACGTcount: A:0.38, C:0.00, G:0.25, T:0.37
Consensus pattern (24 bp):
TTTGAGATATAAAATAGGTGATAA
Found at i:32221325 original size:24 final size:23
Alignment explanation
Indices: 32221263--32221326 Score: 58
Period size: 24 Copynumber: 2.7 Consensus size: 23
32221253 GAGCTAAACG
* *
32221263 GTAAACTCTGACGAGCTGAATCA
1 GTAAGCTCTTACGAGCTGAATCA
* * *
32221286 GTAAGTTCATATGAGCTGAGAAT-A
1 GTAAGCTCTTACGAGCT--GAATCA
32221310 GTAAGCTCTTACGAGCT
1 GTAAGCTCTTACGAGCT
32221327 AATATATCAA
Statistics
Matches: 31, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
23 12 0.39
24 15 0.48
25 4 0.13
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (23 bp):
GTAAGCTCTTACGAGCTGAATCA
Found at i:32226617 original size:56 final size:56
Alignment explanation
Indices: 32226550--32226711 Score: 243
Period size: 56 Copynumber: 2.9 Consensus size: 56
32226540 TACATGTAAC
* * * *
32226550 CACATATCGATGCCAACGTACTAGACGTGGTCTTACTTGCACACATTTATCAGAAT
1 CACATATCGATGCCAACGTATTAAATGTGGTCTTACTTGCACACATATATCAGAAT
* ** *
32226606 CACATATCGATGCCAACGTATTAAATTTGGTCTTACTCCCACACATATATCGGAAT
1 CACATATCGATGCCAACGTATTAAATGTGGTCTTACTTGCACACATATATCAGAAT
*
32226662 CACATATCGATGCCAATGTATTAAATGTGGTCTTACTTGCACACATATAT
1 CACATATCGATGCCAACGTATTAAATGTGGTCTTACTTGCACACATATAT
32226712 GGATGCCATG
Statistics
Matches: 94, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
56 94 1.00
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.31
Consensus pattern (56 bp):
CACATATCGATGCCAACGTATTAAATGTGGTCTTACTTGCACACATATATCAGAAT
Found at i:32234459 original size:27 final size:22
Alignment explanation
Indices: 32234409--32234453 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
32234399 ATTCAATGAC
32234409 ATAATCAACTCAATTTAAAATA
1 ATAATCAACTCAATTTAAAATA
32234431 ATAATCAACTCAATTTAAAATA
1 ATAATCAACTCAATTTAAAATA
32234453 A
1 A
32234454 CATAATCACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.56, C:0.13, G:0.00, T:0.31
Consensus pattern (22 bp):
ATAATCAACTCAATTTAAAATA
Found at i:32239941 original size:16 final size:16
Alignment explanation
Indices: 32239915--32239948 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
32239905 GATTGAAGGC
32239915 TTTAAGTTT-AATTAA
1 TTTAAGTTTAAATTAA
32239930 TTTAATGTTTAAATTAA
1 TTTAA-GTTTAAATTAA
32239947 TT
1 TT
32239949 AAACTATTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.29
16 4 0.24
17 8 0.47
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (16 bp):
TTTAAGTTTAAATTAA
Found at i:32247269 original size:27 final size:27
Alignment explanation
Indices: 32247239--32247291 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
32247229 CCCAAAATAC
32247239 GTAAAATAACCATAATACCCTTATATG
1 GTAAAATAACCATAATACCCTTATATG
* * *
32247266 GTAAAATAACGATTATGCCCTTATAT
1 GTAAAATAACCATAATACCCTTATAT
32247292 TTCATATAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.42, C:0.17, G:0.09, T:0.32
Consensus pattern (27 bp):
GTAAAATAACCATAATACCCTTATATG
Found at i:32247475 original size:27 final size:27
Alignment explanation
Indices: 32247416--32247475 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
32247406 GGAAGCATTG
* *
32247416 TACTGGTGGCTATGTCACATTCACTGT
1 TACTGGTGGCTATGCCACATTCACTAT
* *
32247443 TACTGGTGGCTTTGCCACATTTACTAT
1 TACTGGTGGCTATGCCACATTCACTAT
*
32247470 TTCTGG
1 TACTGG
32247476 CAACTATGCT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.40
Consensus pattern (27 bp):
TACTGGTGGCTATGCCACATTCACTAT
Found at i:32247644 original size:28 final size:28
Alignment explanation
Indices: 32247589--32247685 Score: 70
Period size: 28 Copynumber: 3.3 Consensus size: 28
32247579 GGTGTGCTGA
* **
32247589 TACTGTATTA-GGCTTAGGCCCACACTGT
1 TACTGTA-TAGGGCTAAGGCCCGGACTGT
* *
32247617 TACTGTATAGGGCTAAGGTCCGGGCTGTACTGA
1 TACTGTATAGGGCTAAGG-CC---C-GGACTGT
* *
32247650 TACTGAATAGGGCTCAGGCCCGGACTGT
1 TACTGTATAGGGCTAAGGCCCGGACTGT
32247678 TACTGTAT
1 TACTGTAT
32247686 GCACTTTTTA
Statistics
Matches: 54, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
27 2 0.04
28 26 0.48
29 3 0.06
32 3 0.06
33 20 0.37
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (28 bp):
TACTGTATAGGGCTAAGGCCCGGACTGT
Found at i:32247660 original size:33 final size:34
Alignment explanation
Indices: 32247612--32247682 Score: 90
Period size: 33 Copynumber: 2.1 Consensus size: 34
32247602 TTAGGCCCAC
* * * *
32247612 ACTGTTACTGTATAGGGCTAAGGTCCGGGCTG-T
1 ACTGATACTGAATAGGGCTAAGGCCCGGACTGTT
*
32247645 ACTGATACTGAATAGGGCTCAGGCCCGGACTGTT
1 ACTGATACTGAATAGGGCTAAGGCCCGGACTGTT
32247679 ACTG
1 ACTG
32247683 TATGCACTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
33 27 0.84
34 5 0.16
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.27
Consensus pattern (34 bp):
ACTGATACTGAATAGGGCTAAGGCCCGGACTGTT
Found at i:32252028 original size:18 final size:18
Alignment explanation
Indices: 32252005--32252067 Score: 54
Period size: 23 Copynumber: 3.2 Consensus size: 18
32251995 ATTCTTTTTC
32252005 TTTATTTTTCTTTATTTA
1 TTTATTTTTCTTTATTTA
*
32252023 TTTATTTTACTTTTATTCTTA
1 TTTATTTTTC-TTTA-T-TTA
*
32252044 CTTTTATTTTTATTTTATTTA
1 --TTTATTTTT-CTTTATTTA
32252065 TTT
1 TTT
32252068 GAGTATTATT
Statistics
Matches: 36, Mismatches: 3, Indels: 11
0.72 0.06 0.22
Matches are distributed among these distances:
18 9 0.25
19 7 0.19
20 1 0.03
21 6 0.17
22 1 0.03
23 12 0.33
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTATTTTTCTTTATTTA
Found at i:32252046 original size:12 final size:11
Alignment explanation
Indices: 32252023--32252063 Score: 57
Period size: 12 Copynumber: 3.6 Consensus size: 11
32252013 TCTTTATTTA
32252023 TTTATTTTACT
1 TTTATTTTACT
32252034 TTTATTCTTACT
1 TTTATT-TTACT
32252046 TTTATTTTTA-T
1 TTTA-TTTTACT
32252057 TTTATTT
1 TTTATTT
32252064 ATTTGAGTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
10 3 0.11
11 11 0.39
12 12 0.43
13 2 0.07
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.76
Consensus pattern (11 bp):
TTTATTTTACT
Found at i:32252232 original size:3 final size:3
Alignment explanation
Indices: 32252168--32252213 Score: 56
Period size: 3 Copynumber: 15.3 Consensus size: 3
32252158 TTTTTTATGT
* * * *
32252168 TTA TTA TTA TTA TTA TTA TTA TTA TTG TTG TTG TTA TTG TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
32252214 CCTTCTTTGT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.24, C:0.00, G:0.09, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:32252303 original size:27 final size:28
Alignment explanation
Indices: 32252237--32252303 Score: 66
Period size: 27 Copynumber: 2.4 Consensus size: 28
32252227 ATTATTACAC
32252237 TTATTGATTATTCCTATATATTATTATTT
1 TTATT-ATTATTCCTATATATTATTATTT
* * * *
32252266 TTAGTACTATTCCT-TAT-TTCGTTCTTT
1 TTATTATTATTCCTATATATT-ATTATTT
32252293 TTATTATTATT
1 TTATTATTATT
32252304 TAGTTTTGTT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
26 2 0.06
27 17 0.55
28 8 0.26
29 4 0.13
ACGTcount: A:0.22, C:0.10, G:0.04, T:0.63
Consensus pattern (28 bp):
TTATTATTATTCCTATATATTATTATTT
Found at i:32253830 original size:42 final size:43
Alignment explanation
Indices: 32253773--32253878 Score: 119
Period size: 42 Copynumber: 2.5 Consensus size: 43
32253763 TATGATTTAC
*
32253773 GTGTAAGACCATGTCTGGGACA-TCGGCATC-GTATTTGATTTT
1 GTGTAAGACCATGTCTGGGACAGT-GGCATCAATATTTGATTTT
**
32253815 GTGTAAGACTC-TGTCTGGGACAGTGGCATCAATATTTGATTAC
1 GTGTAAGAC-CATGTCTGGGACAGTGGCATCAATATTTGATTTT
* * *
32253858 ATGTAAGCCCATGTCTTGGAC
1 GTGTAAGACCATGTCTGGGAC
32253879 GTTGGTATTG
Statistics
Matches: 54, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
42 27 0.50
43 27 0.50
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACAGTGGCATCAATATTTGATTTT
Found at i:32262563 original size:39 final size:40
Alignment explanation
Indices: 32262479--32262563 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
32262469 ACTTAATTCA
* * *
32262479 CCAGCATTAAGCCTGCGGGACTTTAAACCCGGATACAATC
1 CCAGCATGAAGCCAGCGGGACTCTAAACCCGGATACAATC
* *
32262519 CCAGCATGAAGCCAGCGGGTCTCT-AACCCGGATGCAATC
1 CCAGCATGAAGCCAGCGGGACTCTAAACCCGGATACAATC
*
32262558 TCAGCA
1 CCAGCA
32262564 CAATTCATTT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 19 0.49
40 20 0.51
ACGTcount: A:0.28, C:0.32, G:0.22, T:0.18
Consensus pattern (40 bp):
CCAGCATGAAGCCAGCGGGACTCTAAACCCGGATACAATC
Found at i:32262735 original size:47 final size:45
Alignment explanation
Indices: 32262634--32262742 Score: 139
Period size: 47 Copynumber: 2.4 Consensus size: 45
32262624 TGCACACTTT
* *
32262634 TCACAATTGGTCATTCGGCCTTATCACATATTCACTTAAACATATA
1 TCAC-ATTGGCCATTCGGCCTTATCACATATACACTTAAACATATA
**
32262680 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACAT-TCA
1 TCACATTGGCCATTCGGCCTTATCACATAT--ACACTTAAACATAT-A
32262727 TCACATTGGCCATTCG
1 TCACATTGGCCATTCG
32262743 ATCTTAAGCT
Statistics
Matches: 56, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
45 25 0.45
46 5 0.09
47 26 0.46
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.33
Consensus pattern (45 bp):
TCACATTGGCCATTCGGCCTTATCACATATACACTTAAACATATA
Found at i:32265331 original size:22 final size:20
Alignment explanation
Indices: 32265291--32265331 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
32265281 AGTCCTATTA
*
32265291 ACTAAATTCACATGCAATTG
1 ACTAAATTCACATGAAATTG
32265311 ACTAAATTCAAACATGAAATT
1 ACTAAATTC--ACATGAAATT
32265332 TTCACACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
22 9 0.50
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.29
Consensus pattern (20 bp):
ACTAAATTCACATGAAATTG
Found at i:32266602 original size:40 final size:40
Alignment explanation
Indices: 32266558--32266833 Score: 390
Period size: 40 Copynumber: 6.9 Consensus size: 40
32266548 GAATACACAT
* * *
32266558 CACCAACATGAATGCTCTTCGGGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
32266598 CACCAGCACGAATGCTCTTCGGGACTTAACCCTGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* **
32266638 CTCCAGCACGAATGCTCTTCGAAACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
32266678 CACCAGCACGAATGCTCTTCAGGAATTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
32266718 CACCAGCACGAATGCTCTTCGGGAATTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * * *
32266758 CACCGGCACGAATGCCCTTCGGGATTTAGCCTGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
32266798 CACCGGCACGAATGCCCTTTGGGACTTAGCCCGGAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
32266834 CATCGTCGAG
Statistics
Matches: 213, Mismatches: 23, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 213 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:32266960 original size:38 final size:38
Alignment explanation
Indices: 32266874--32266965 Score: 112
Period size: 38 Copynumber: 2.4 Consensus size: 38
32266864 CTCTATATGA
* * * **
32266874 AGCCAGTGGGTCTTAATCCGGACATAATCTCTGTACAT
1 AGCCAGCGGGTCTTTACCCGGACATAATCTCTACACAT
* *
32266912 AGCCATCGGGTCTTTACCCGGACATAATCTCTACATAT
1 AGCCAGCGGGTCTTTACCCGGACATAATCTCTACACAT
*
32266950 AGTCAGCGGGTCTTTA
1 AGCCAGCGGGTCTTTA
32266966 AACTCGGATT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
38 45 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (38 bp):
AGCCAGCGGGTCTTTACCCGGACATAATCTCTACACAT
Found at i:32269508 original size:39 final size:40
Alignment explanation
Indices: 32269424--32269508 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
32269414 ACTTAATTCA
* * *
32269424 CCAGCATTAAGCCTGCGGGACTTTAAACCCGGATACAATC
1 CCAGCATGAAGCCAGCGGGACTCTAAACCCGGATACAATC
* *
32269464 CCAGCATGAAGCCAGCGGGTCTCT-AACCCGGATGCAATC
1 CCAGCATGAAGCCAGCGGGACTCTAAACCCGGATACAATC
*
32269503 TCAGCA
1 CCAGCA
32269509 CAATTCATTT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 19 0.49
40 20 0.51
ACGTcount: A:0.28, C:0.32, G:0.22, T:0.18
Consensus pattern (40 bp):
CCAGCATGAAGCCAGCGGGACTCTAAACCCGGATACAATC
Found at i:32269680 original size:47 final size:45
Alignment explanation
Indices: 32269579--32269687 Score: 130
Period size: 47 Copynumber: 2.4 Consensus size: 45
32269569 TGCACACTTT
* *
32269579 TCACAATTGGTCATTCGGCCTTATCACATATTCACTTAAACATATA
1 TCAC-ATTGGCCATTCGGCCTTATCACATATACACTTAAACATATA
* **
32269625 TCACATTGGCCATTTGGCCTTATCACATATACACACTTTCACAT-TCA
1 TCACATTGGCCATTCGGCCTTATCACATAT--ACACTTAAACATAT-A
32269672 TCACATTGGCCATTCG
1 TCACATTGGCCATTCG
32269688 ATCTTAAGCT
Statistics
Matches: 54, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
45 24 0.44
46 5 0.09
47 25 0.46
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.34
Consensus pattern (45 bp):
TCACATTGGCCATTCGGCCTTATCACATATACACTTAAACATATA
Found at i:32272277 original size:22 final size:20
Alignment explanation
Indices: 32272237--32272277 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
32272227 AGTCCTATTA
*
32272237 ACTAAATTCACATGCAATTG
1 ACTAAATTCACATGAAATTG
32272257 ACTAAATTCAAACATGAAATT
1 ACTAAATTC--ACATGAAATT
32272278 TTCACACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
22 9 0.50
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.29
Consensus pattern (20 bp):
ACTAAATTCACATGAAATTG
Found at i:32273204 original size:43 final size:43
Alignment explanation
Indices: 32273046--32273204 Score: 164
Period size: 43 Copynumber: 3.7 Consensus size: 43
32273036 TATGTATTTT
* *
32273046 CGTGTAAGACCATGTCTGGGATGTTGGCAT-AA-ACTTATGATTTA
1 CGTGTAAGACCATGTCTGGGACGTCGGCATCAATA-TT-TGA-TTA
* * * *
32273090 CGTGTAAGACCATGTCTGGGACATCGTCATC-GTATTTGATTT
1 CGTGTAAGACCATGTCTGGGACGTCGGCATCAATATTTGATTA
*
32273132 CGTGTAAGACCTTGTCTGGGACAG-CGGCATCAATATTTGATTA
1 CGTGTAAGACCATGTCTGGGAC-GTCGGCATCAATATTTGATTA
* * *
32273175 CATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGTGTAAGACCATGTCTGGGACGTCGGCAT
32273205 TGTACGAGCT
Statistics
Matches: 95, Mismatches: 15, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
42 30 0.32
43 36 0.38
44 28 0.29
45 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (43 bp):
CGTGTAAGACCATGTCTGGGACGTCGGCATCAATATTTGATTA
Found at i:32277182 original size:47 final size:48
Alignment explanation
Indices: 32277111--32277214 Score: 133
Period size: 47 Copynumber: 2.2 Consensus size: 48
32277101 GGCTCTTTGT
* * *
32277111 GAGCTTCCCGATAGTGCTCGCTTGAACAT-CTTA-ATATCGGCTATCCG
1 GAGCTTCCCGATAGTGCTCACTTGAACATCCTGATATAT-GACTATCCG
*
32277158 GAGCTTCCCGATA-TGGCTCACTTGAACTTCCTGATATATGACTATCCG
1 GAGCTTCCCGATAGT-GCTCACTTGAACATCCTGATATATGACTATCCG
32277206 GAGCTTCCC
1 GAGCTTCCC
32277215 AATTAATAGC
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
46 1 0.02
47 25 0.50
48 20 0.40
49 4 0.08
ACGTcount: A:0.21, C:0.29, G:0.20, T:0.30
Consensus pattern (48 bp):
GAGCTTCCCGATAGTGCTCACTTGAACATCCTGATATATGACTATCCG
Found at i:32292974 original size:49 final size:49
Alignment explanation
Indices: 32292916--32293154 Score: 221
Period size: 49 Copynumber: 4.8 Consensus size: 49
32292906 GTAGCCGGAG
* *
32292916 CTATCTGGTACTCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAA
* * * * *
32292965 CAATCTGGTACACGTAGTAGCCTGTACTTA-TACTACAAATGTGACGAAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGAC-CAA
* * * * *
32293014 CCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA
* * * * * * * *
32293064 GTTGTCGGGTACGCATAGTAGCCTACACTTAGTACTACTCATACGACCTAA
1 -CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACC-AA
* *
32293115 CTATCTGGTACACGTAGTAGCC-CCAACTTAGTACAACACA
1 CTATCTGGTACACGTAGTAGCCTGC-ACTTAGTACTACACA
32293155 CGTGACCTAA
Statistics
Matches: 150, Mismatches: 34, Indels: 11
0.77 0.17 0.06
Matches are distributed among these distances:
48 13 0.09
49 56 0.37
50 45 0.30
51 36 0.24
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAA
Found at i:32308768 original size:31 final size:31
Alignment explanation
Indices: 32308727--32308790 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
32308717 CCTTTTCATA
*
32308727 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
32308758 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
32308789 TT
1 TT
32308791 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:32309059 original size:23 final size:23
Alignment explanation
Indices: 32309005--32309123 Score: 193
Period size: 23 Copynumber: 5.1 Consensus size: 23
32308995 CCTAGCCTCT
*
32309005 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
32309028 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
32309052 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* * *
32309075 TTTAATAACTGAGGTACAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
32309098 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
32309121 TTT
1 TTT
32309124 TCCACTTCCT
Statistics
Matches: 88, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
23 66 0.75
24 22 0.25
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:32309202 original size:20 final size:20
Alignment explanation
Indices: 32309174--32309240 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
32309164 TTATGATTAC
*
32309174 ATCACGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
32309194 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
32309214 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
32309234 ACCATGT
1 ATCATGT
32309241 TTATCAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:32317027 original size:22 final size:23
Alignment explanation
Indices: 32316997--32317118 Score: 162
Period size: 23 Copynumber: 5.5 Consensus size: 23
32316987 CTGAAGGCCT
* *
32316997 AGCCTTTTAATAACT-GGGCAAA
1 AGCCCTTTAATAACTAGGGCACA
* *
32317019 AGCCCTTT-A-AACTGGGGCATA
1 AGCCCTTTAATAACTAGGGCACA
*
32317040 AGCCCTTTAATAACTAGGGCATA
1 AGCCCTTTAATAACTAGGGCACA
32317063 A-CCCTTTAATAACTAGGGCACA
1 AGCCCTTTAATAACTAGGGCACA
*
32317085 AGCCCTTTAATAACTGGGGCACA
1 AGCCCTTTAATAACTAGGGCACA
32317108 AGCCCTTTAAT
1 AGCCCTTTAAT
32317119 CTGGGGCATA
Statistics
Matches: 91, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
20 4 0.04
21 15 0.16
22 29 0.32
23 43 0.47
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (23 bp):
AGCCCTTTAATAACTAGGGCACA
Found at i:32317096 original size:45 final size:45
Alignment explanation
Indices: 32316997--32317118 Score: 160
Period size: 45 Copynumber: 2.7 Consensus size: 45
32316987 CTGAAGGCCT
* * *
32316997 AGCCTTTTAATAACTGGGCAAAAGCCCTTT-A-AACTGGGGCATA
1 AGCCCTTTAATAACTGGGCAAAAGCCCTTTAATAACTAGGGCACA
*
32317040 AGCCCTTTAATAACTAGGGCATAA-CCCTTTAATAACTAGGGCACA
1 AGCCCTTTAATAACT-GGGCAAAAGCCCTTTAATAACTAGGGCACA
*
32317085 AGCCCTTTAATAACTGGGGCACAAGCCCTTTAAT
1 AGCCCTTTAATAACT-GGGCAAAAGCCCTTTAAT
32317119 CTGGGGCATA
Statistics
Matches: 69, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
43 20 0.29
44 8 0.12
45 32 0.46
46 9 0.13
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (45 bp):
AGCCCTTTAATAACTGGGCAAAAGCCCTTTAATAACTAGGGCACA
Found at i:32317218 original size:19 final size:20
Alignment explanation
Indices: 32317183--32317243 Score: 88
Period size: 19 Copynumber: 3.0 Consensus size: 20
32317173 TTATGATTAC
*
32317183 ATCACGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
32317203 ATCATGTGCA-ATCATACAT
1 ATCATGTGCATATCATACAT
*
32317222 GTCATGTTGCATATCATACAT
1 ATCATG-TGCATATCATACAT
32317243 A
1 A
32317244 CAATGTTTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
19 14 0.39
20 13 0.36
21 9 0.25
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:32319521 original size:93 final size:93
Alignment explanation
Indices: 32319362--32319533 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
32319352 TTCCCCTAAG
* * * *
32319362 TGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGTATCCATAAGTGAACTCAGACTCAACTCA
1 TGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTAAACTCAGACTCAACTCA
*
32319427 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACAAGTTCGGATGCCTAGTTACATCTCA
* * * *
32319455 TGAACTCGGACTGAACTCAACGAGTTCGGACATTCGCATCCATAAGTAAACTCGGACTCAACTCA
1 TGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTAAACTCAGACTCAACTCA
32319520 ACAAGTTCGGATGC
66 ACAAGTTCGGATGC
32319534 TCAACTATCC
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
TGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTAAACTCAGACTCAACTCA
ACAAGTTCGGATGCCTAGTTACATCTCA
Found at i:32319530 original size:46 final size:46
Alignment explanation
Indices: 32319358--32319530 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
32319348 AACCTTCCCC
* * * *
32319358 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGTATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
32319404 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* * *
32319452 TCA-TGAACTCGGACTGAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* * *
32319497 TAAGTAAACTCGGACTCAACTCAACAAGTTCGGA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
32319531 TGCTCAACTA
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 59 0.56
47 28 0.27
48 2 0.02
49 2 0.02
50 2 0.02
51 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:32326500 original size:93 final size:93
Alignment explanation
Indices: 32326389--32326559 Score: 245
Period size: 93 Copynumber: 1.8 Consensus size: 93
32326379 GCCCCTAAGT
* * * *
32326389 GAACTCGGAATCAACTCAATGAGCTC-GACCGTTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGAATCAACTCAACGAGCTCGGA-CATTCGCATCCATAAGTGAACTCGGACTAAACTCA
*
32326453 ATGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
* * **
32326482 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCTTTAAGTGAACTCGGACTAAACTCAA
1 GAACTCGGAATCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTAAACTCAA
32326547 CGAGTTCGGATGC
66 CGAGTTCGGATGC
32326560 TCAACCATCA
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
93 66 0.97
94 2 0.03
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.24
Consensus pattern (93 bp):
GAACTCGGAATCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTAAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:32326575 original size:46 final size:45
Alignment explanation
Indices: 32326430--32326564 Score: 123
Period size: 46 Copynumber: 2.9 Consensus size: 45
32326420 TTTGCATCCA
*
32326430 TAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGC-CTAGTTACATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACATC
* * * * * *
32326478 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATC-TT
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACATC
*
32326523 TAAGTGAACTCGGACTAAACTCAACGAGTTCGGATGCTCAAC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAAC
32326565 CATCATAGTG
Statistics
Matches: 71, Mismatches: 12, Indels: 12
0.75 0.13 0.13
Matches are distributed among these distances:
44 6 0.08
45 3 0.04
46 28 0.39
47 27 0.38
48 2 0.03
49 4 0.06
50 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACATC
Found at i:32327016 original size:30 final size:30
Alignment explanation
Indices: 32326982--32327041 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
32326972 ATTTAATACG
32326982 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
32327012 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
32327042 GGCTTGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:32328332 original size:13 final size:13
Alignment explanation
Indices: 32328314--32328338 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32328304 CGACCCATCC
32328314 TATGGCCGTGTGG
1 TATGGCCGTGTGG
32328327 TATGGCCGTGTG
1 TATGGCCGTGTG
32328339 TCCCCTGCAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.16, G:0.44, T:0.32
Consensus pattern (13 bp):
TATGGCCGTGTGG
Found at i:32334014 original size:30 final size:29
Alignment explanation
Indices: 32333978--32334035 Score: 98
Period size: 30 Copynumber: 2.0 Consensus size: 29
32333968 AATTGGAAGT
*
32333978 TTTGGCATTAAGTGTGCGATTTAAACTAGC
1 TTTGGCACTAAGTGTGCGATTT-AACTAGC
32334008 TTTGGCACTAAGTGTGCGATTTAACTAG
1 TTTGGCACTAAGTGTGCGATTTAACTAG
32334036 TTCAGCTACT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
29 6 0.22
30 21 0.78
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.36
Consensus pattern (29 bp):
TTTGGCACTAAGTGTGCGATTTAACTAGC
Found at i:32344183 original size:180 final size:181
Alignment explanation
Indices: 32343873--32344243 Score: 708
Period size: 180 Copynumber: 2.1 Consensus size: 181
32343863 TGCGACATGT
32343873 ATTAGGTTTTGTTTTAGTCACTTAAATATATTTTATGTTTTGGGTGTAAAGTGAACTTGTAACTT
1 ATTAGGTTTTGTTTTAGTCACTTAAATATATTTTATGTTTTGGGTGTAAAGTGAACTTGTAACTT
*
32343938 TTAAGAAGTATTTCAAATGAATAAATGAATGCTATTTGATCAAGATATATAAGTCAATGTTTTGG
66 TTAAGAAGTATTTCAAATGAATAAATGAATGCTATTTGATCAAGATATATAAGTCAATATTTTGG
32344003 GCATGAACTAGGTGTGTTTGATATGTGAAAATAGCTTAAAAATGATGAAAA
131 GCATGAACTAGGTGTGTTTGATATGTGAAAATAGCTTAAAAATGATGAAAA
32344054 ATTAGGTTTTGTTTTAGTCACTTAAATATA-TTTATGTTTTGGGTGTAAAGTGAACTTGTAACTT
1 ATTAGGTTTTGTTTTAGTCACTTAAATATATTTTATGTTTTGGGTGTAAAGTGAACTTGTAACTT
*
32344118 TTAAGAAGTATTTCAAATGAATAAATGAATGCTATTTGATCAAGATTTATAAGTCAATATTTTGG
66 TTAAGAAGTATTTCAAATGAATAAATGAATGCTATTTGATCAAGATATATAAGTCAATATTTTGG
*
32344183 GCATGAACTAGGTGTGTTTGATATGTGAAAATAGCTTTAAAATGATGAAAA
131 GCATGAACTAGGTGTGTTTGATATGTGAAAATAGCTTAAAAATGATGAAAA
32344234 ATTAGGTTTT
1 ATTAGGTTTT
32344244 TACACGGCCA
Statistics
Matches: 187, Mismatches: 3, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
180 157 0.84
181 30 0.16
ACGTcount: A:0.35, C:0.06, G:0.19, T:0.40
Consensus pattern (181 bp):
ATTAGGTTTTGTTTTAGTCACTTAAATATATTTTATGTTTTGGGTGTAAAGTGAACTTGTAACTT
TTAAGAAGTATTTCAAATGAATAAATGAATGCTATTTGATCAAGATATATAAGTCAATATTTTGG
GCATGAACTAGGTGTGTTTGATATGTGAAAATAGCTTAAAAATGATGAAAA
Found at i:32344395 original size:20 final size:20
Alignment explanation
Indices: 32344362--32344399 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
32344352 GCCCCACGGG
32344362 CAGGCAACACGGGCATGTCC
1 CAGGCAACACGGGCATGTCC
* *
32344382 CAGGCCACATGGGCATGT
1 CAGGCAACACGGGCATGT
32344400 GCCCCTATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.24, C:0.32, G:0.32, T:0.13
Consensus pattern (20 bp):
CAGGCAACACGGGCATGTCC
Found at i:32344870 original size:25 final size:25
Alignment explanation
Indices: 32344841--32344889 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
32344831 TGAAGAGTCG
*
32344841 TATGATTTAGATGAAATGGAGTCAC
1 TATGATTTAGATGAAACGGAGTCAC
32344866 TATGATTTAGATGAAACGGAGTCA
1 TATGATTTAGATGAAACGGAGTCA
32344890 GCTACTCCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.37, C:0.08, G:0.24, T:0.31
Consensus pattern (25 bp):
TATGATTTAGATGAAACGGAGTCAC
Found at i:32354621 original size:27 final size:26
Alignment explanation
Indices: 32354573--32354632 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
32354563 GCGAGGCTGC
*
32354573 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
32354600 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
32354626 CAGATAT
1 CAGATAT
32354633 ATATATATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:32354645 original size:33 final size:32
Alignment explanation
Indices: 32354594--32354657 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
32354584 ACGAAGTCAC
* *
32354594 CAGATACAGATATTGTGGCTAGGCCACCAGAA
1 CAGATACAGATATTGTGGCGAAGCCACCAGAA
* *
32354626 CAGATATATATATATGTGGCGAAGCCACCAGA
1 CAGATACAGATAT-TGTGGCGAAGCCACCAGA
32354658 TTGCAGCGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (32 bp):
CAGATACAGATATTGTGGCGAAGCCACCAGAA
Found at i:32354721 original size:27 final size:26
Alignment explanation
Indices: 32354673--32354724 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
32354663 GCGAGGCTGC
*
32354673 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
32354699 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
32354725 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:32373381 original size:21 final size:20
Alignment explanation
Indices: 32373357--32373401 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
32373347 TATAAACAAC
32373357 ATTAAATTGCTCAAAATGACA
1 ATTAAATT-CTCAAAATGACA
**
32373378 ATTATGTTCTCAAAATGACA
1 ATTAAATTCTCAAAATGACA
32373398 ATTA
1 ATTA
32373402 TGTTACTACA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 16 0.73
21 6 0.27
ACGTcount: A:0.44, C:0.13, G:0.09, T:0.33
Consensus pattern (20 bp):
ATTAAATTCTCAAAATGACA
Found at i:32373391 original size:20 final size:20
Alignment explanation
Indices: 32373366--32373405 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
32373356 CATTAAATTG
32373366 CTCAAAATGACAATTATGTT
1 CTCAAAATGACAATTATGTT
32373386 CTCAAAATGACAATTATGTT
1 CTCAAAATGACAATTATGTT
32373406 ACTACATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.15, G:0.10, T:0.35
Consensus pattern (20 bp):
CTCAAAATGACAATTATGTT
Found at i:32379316 original size:94 final size:94
Alignment explanation
Indices: 32379154--32379341 Score: 313
Period size: 94 Copynumber: 2.0 Consensus size: 94
32379144 AATGTGACCG
* * *
32379154 TATATGCTATTTTAATTAAGTAAGTTGCCATATTATAATGAGTTAACATTGGCACTATGTGTGTG
1 TATATGCTATTTGAATTAAGTAAATTGCCATATTATAATGAGTTAACATTGGCACTATGTGTGCG
*
32379219 GAATTAAATGCCAATTTGTGTGCAGATTT
66 GAATTAAATGCCAATATGTGTGCAGATTT
*
32379248 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCATATTATAATGAGTTAACATTGGCACTATGTGTGCG
* *
32379313 GAATTAAATGGCACTATGTGTGCAGATTT
66 GAATTAAATGCCAATATGTGTGCAGATTT
32379342 GAATGTCGAT
Statistics
Matches: 87, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
94 87 1.00
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (94 bp):
TATATGCTATTTGAATTAAGTAAATTGCCATATTATAATGAGTTAACATTGGCACTATGTGTGCG
GAATTAAATGCCAATATGTGTGCAGATTT
Found at i:32379425 original size:23 final size:24
Alignment explanation
Indices: 32379371--32379432 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
32379361 AAAAGTTCAG
** * *
32379371 GCACTATGTGTGCGGTTTAGTATG
1 GCACTATGTGTGCGACTTAATATA
32379395 GCACTATGTGTGCGACTTAAT-TA
1 GCACTATGTGTGCGACTTAATATA
32379418 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
32379433 ATTTGGTTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 16 0.47
24 18 0.53
ACGTcount: A:0.21, C:0.16, G:0.29, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGACTTAATATA
Found at i:32387016 original size:94 final size:94
Alignment explanation
Indices: 32386855--32387136 Score: 483
Period size: 94 Copynumber: 3.0 Consensus size: 94
32386845 AATGTGACCG
* *
32386855 TATATGCTATTTGAATTAAGTAAGTTGCCATATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
* *
32386920 GAATTAAATGTCACTTTGTGTGTAGATTT
66 GAATTAAATGACACTTTGTGTGCAGATTT
*
32386949 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTAAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
*
32387014 GAATTAAATGAAACTTTGTGTGCAGATTT
66 GAATTAAATGACACTTTGTGTGCAGATTT
* *
32387043 TATATGCTATTTGAATTAAGTCAATTGCCTTATTATATTGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
*
32387108 GAATTAAATGACACTATGTGTGCAGATTT
66 GAATTAAATGACACTTTGTGTGCAGATTT
32387137 GAATGTCGAT
Statistics
Matches: 177, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
94 177 1.00
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (94 bp):
TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
GAATTAAATGACACTTTGTGTGCAGATTT
Found at i:32394465 original size:94 final size:94
Alignment explanation
Indices: 32394304--32394679 Score: 644
Period size: 94 Copynumber: 4.0 Consensus size: 94
32394294 AATGTGACCG
* * *
32394304 TATATGCTATTTGAATTAAGTAAGTTGCCATATTATATTGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
32394369 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
* *
32394398 TATATGCTATCTGAATTAAGTAAATTTCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
*
32394463 GAATTAAATGTCACTTTGTGTACAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
* *
32394492 TATATGCTGTTTGAATTAAGTAAATTGCCTTACTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
*
32394557 GAATTAAATGTCACTTTGTGTGCATATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
*
32394586 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGTG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
* *
32394651 GAATTAAATGGCACTATGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
32394680 GAATGTCGAT
Statistics
Matches: 264, Mismatches: 18, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
94 264 1.00
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.40
Consensus pattern (94 bp):
TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
GAATTAAATGTCACTTTGTGTGCAGATTT
Found at i:32394740 original size:24 final size:24
Alignment explanation
Indices: 32394708--32394771 Score: 85
Period size: 24 Copynumber: 2.7 Consensus size: 24
32394698 GAAAATTTCA
* *
32394708 GGCACTATGTGTGCG-GTTTAGTAT
1 GGCACTATGTGTGCGAGCTTAAT-T
32394732 GGCACTATGTGTGCGAGCTTAATT
1 GGCACTATGTGTGCGAGCTTAATT
*
32394756 AGCACTATGTGTGCGA
1 GGCACTATGTGTGCGA
32394772 ATTTGGTTAA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
24 31 0.86
25 5 0.14
ACGTcount: A:0.20, C:0.16, G:0.31, T:0.33
Consensus pattern (24 bp):
GGCACTATGTGTGCGAGCTTAATT
Found at i:32412334 original size:20 final size:20
Alignment explanation
Indices: 32412308--32412349 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
32412298 AATGACATGG
* *
32412308 AATTTTTGTAATTGTTCTGTA
1 AATTTTGGTAA-TGCTCTGTA
32412329 AATTTTGGTAATGCTCTGTA
1 AATTTTGGTAATGCTCTGTA
32412349 A
1 A
32412350 CCCTATTCTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.26, C:0.07, G:0.17, T:0.50
Consensus pattern (20 bp):
AATTTTGGTAATGCTCTGTA
Found at i:32416496 original size:33 final size:33
Alignment explanation
Indices: 32416458--32416524 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
32416448 CTCAAGTGTT
32416458 TTTCATTGTAATTAAGCTTAATTTTGCAAACAC
1 TTTCATTGTAATTAAGCTTAATTTTGCAAACAC
*
32416491 TTTCATTGTAATTGAGCTTAATTTTGCAAACAC
1 TTTCATTGTAATTAAGCTTAATTTTGCAAACAC
32416524 T
1 T
32416525 AAGATATTGT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.31, C:0.15, G:0.10, T:0.43
Consensus pattern (33 bp):
TTTCATTGTAATTAAGCTTAATTTTGCAAACAC
Found at i:32417844 original size:12 final size:14
Alignment explanation
Indices: 32417817--32417850 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
32417807 ACCCGAATAC
32417817 AAATCTCTCCCAAA
1 AAATCTCTCCCAAA
32417831 AAATCTCT-CCAAA
1 AAATCTCTCCCAAA
32417844 AATATCT
1 AA-ATCT
32417851 ATCAAATCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.44, C:0.29, G:0.00, T:0.26
Consensus pattern (14 bp):
AAATCTCTCCCAAA
Found at i:32426875 original size:34 final size:34
Alignment explanation
Indices: 32426802--32426876 Score: 91
Period size: 34 Copynumber: 2.2 Consensus size: 34
32426792 TTCTACGCTG
*
32426802 AAGCCCATATTAGTAGTAGTAACAGTCTGGGCTT
1 AAGCCCATATTAGTAGTAGTAACAGTCTGGGCCT
* *
32426836 TAGCCCAT-TTAGTA-TCAGTAAACAGTCTGGTCCT
1 AAGCCCATATTAGTAGT-AGT-AACAGTCTGGGCCT
32426870 AAGCCCA
1 AAGCCCA
32426877 CCTCAATACA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
32 1 0.03
33 9 0.26
34 25 0.71
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (34 bp):
AAGCCCATATTAGTAGTAGTAACAGTCTGGGCCT
Found at i:32427414 original size:54 final size:54
Alignment explanation
Indices: 32427350--32427470 Score: 152
Period size: 54 Copynumber: 2.2 Consensus size: 54
32427340 AGGGCAAAAA
* *
32427350 AGTCATTTTACCCTATAGGGGAATTACAATCATTATACCTTATAGGGATATTTC
1 AGTCATTTTACCCTATAGAGGAATTACAATCATTATACCCTATAGGGATATTTC
* * * * * *
32427404 AGTCTTTTTACCCTATAGAGGTATTTCAATCATTTTACCCTATGGGGCTATTTC
1 AGTCATTTTACCCTATAGAGGAATTACAATCATTATACCCTATAGGGATATTTC
* *
32427458 GGTCATCTTACCC
1 AGTCATTTTACCC
32427471 GATGAAGGGT
Statistics
Matches: 56, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 56 1.00
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.39
Consensus pattern (54 bp):
AGTCATTTTACCCTATAGAGGAATTACAATCATTATACCCTATAGGGATATTTC
Found at i:32427463 original size:27 final size:27
Alignment explanation
Indices: 32427350--32427470 Score: 127
Period size: 27 Copynumber: 4.5 Consensus size: 27
32427340 AGGGCAAAAA
* *
32427350 AGTCATTTTACCCTATAGGGGAATTAC
1 AGTCATTTTACCCTATAGGGGTATTTC
* * * *
32427377 AATCATTATACCTTATAGGGATATTTC
1 AGTCATTTTACCCTATAGGGGTATTTC
* *
32427404 AGTCTTTTTACCCTATAGAGGTATTTC
1 AGTCATTTTACCCTATAGGGGTATTTC
*
32427431 AATCATTTTACCCTAT-GGGGCTATTTC
1 AGTCATTTTACCCTATAGGGG-TATTTC
* *
32427458 GGTCATCTTACCC
1 AGTCATTTTACCC
32427471 GATGAAGGGT
Statistics
Matches: 75, Mismatches: 18, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
26 3 0.04
27 72 0.96
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.39
Consensus pattern (27 bp):
AGTCATTTTACCCTATAGGGGTATTTC
Found at i:32429937 original size:29 final size:30
Alignment explanation
Indices: 32429871--32429937 Score: 77
Period size: 28 Copynumber: 2.3 Consensus size: 30
32429861 CCATATTTTT
*
32429871 CATTTATTTCACAATTTAACCCCTCAATTTA
1 CATTT-TTTCACAATTTAACCCCTCAATTGA
*
32429902 CATTTTTCTCAC--TTTAATCCCT-AATTGA
1 CATTTTT-TCACAATTTAACCCCTCAATTGA
32429930 CATTTTTT
1 CATTTTTT
32429938 GTCAAAAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
27 1 0.03
28 12 0.36
29 9 0.27
30 2 0.06
31 9 0.27
ACGTcount: A:0.27, C:0.24, G:0.01, T:0.48
Consensus pattern (30 bp):
CATTTTTTCACAATTTAACCCCTCAATTGA
Found at i:32438958 original size:46 final size:46
Alignment explanation
Indices: 32438908--32439083 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
32438898 TGGTTGAGCA
32438908 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
32438954 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
32438999 CATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
32439047 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
32439084 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 4 0.04
46 61 0.56
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:32439064 original size:93 final size:93
Alignment explanation
Indices: 32438905--32439076 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
32438895 GGATGGTTGA
*
32438905 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
32438970 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
32438998 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
32439062 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
32439077 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:32476993 original size:17 final size:18
Alignment explanation
Indices: 32476954--32476996 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
32476944 TAAGGAAAAT
*
32476954 AATATATATAATAAGTAAT
1 AATA-ATATAATAAGTAAA
*
32476973 AATAATAT-ATAATTAAA
1 AATAATATAATAAGTAAA
32476990 AATAATA
1 AATAATA
32476997 CTCATAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 14 0.64
18 4 0.18
19 4 0.18
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (18 bp):
AATAATATAATAAGTAAA
Found at i:32477087 original size:19 final size:19
Alignment explanation
Indices: 32477052--32477089 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
32477042 AAAATAAACA
*
32477052 AATAATAATATATATATAG
1 AATAATAATATAAATATAG
32477071 AATAAT-ATAATAAATATAG
1 AATAATAAT-ATAAATATAG
32477090 GACTGAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 2 0.12
19 15 0.88
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (19 bp):
AATAATAATATAAATATAG
Found at i:32480338 original size:43 final size:43
Alignment explanation
Indices: 32480277--32480441 Score: 156
Period size: 43 Copynumber: 3.8 Consensus size: 43
32480267 TAATGTCATA
* * *
32480277 TCCCAGATATGGTCTTACATGTTATCACATATCGATGCCACTG
1 TCCCAGACATGGTCTTACATGTAATCACATATCGATGCCAATG
* * * * *
32480320 TCCCAGACAAGGTCTTACACGAAATCGA-TTAACGATGCCAATG
1 TCCCAGACATGGTCTTACATGTAATC-ACATATCGATGCCAATG
* * * * *
32480363 TCCTAGATATGGTCTTACACT-TAATCTCA-ATACAATTCCAATG
1 TCCCAGACATGGTCTTACA-TGTAATCACATAT-CGATGCCAATG
*
32480406 TCCCAGACATGGTCTTACATGTAATCACATCTCGAT
1 TCCCAGACATGGTCTTACATGTAATCACATATCGAT
32480442 AATCTAATGT
Statistics
Matches: 93, Mismatches: 23, Indels: 12
0.73 0.18 0.09
Matches are distributed among these distances:
42 2 0.02
43 89 0.96
44 2 0.02
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACATGTAATCACATATCGATGCCAATG
Found at i:32483526 original size:46 final size:46
Alignment explanation
Indices: 32483473--32483563 Score: 146
Period size: 46 Copynumber: 2.0 Consensus size: 46
32483463 TATATATACA
* *
32483473 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAGCCATTCGGCTTTACCACATATC
* *
32483519 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACACATCTCACATTAGCCATTCGGCTTTACCACATAT
32483564 ATACACTTCC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.27, C:0.31, G:0.08, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAGCCATTCGGCTTTACCACATATC
Found at i:32483611 original size:47 final size:47
Alignment explanation
Indices: 32483537--32483680 Score: 164
Period size: 47 Copynumber: 3.1 Consensus size: 47
32483527 ACACATTTCG
* * * *
32483537 CATTAGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACA-TGTCCACATTCATCA
* * * *
32483584 CATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTTATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTCCACATTCATCA
* * * *
32483631 CATTGGCCATTCGGCCTTATCACAAATGTGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTCCACATTCATCA
32483678 CAT
1 CAT
32483681 AAAATCCTAA
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
46 1 0.01
47 83 0.99
ACGTcount: A:0.26, C:0.28, G:0.11, T:0.34
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATACATGTCCACATTCATCA
Found at i:32485330 original size:14 final size:14
Alignment explanation
Indices: 32485311--32485353 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
32485301 TTTCATTTTG
32485311 TAACATAAAATTAT
1 TAACATAAAATTAT
32485325 TAACATAAAA-TAT
1 TAACATAAAATTAT
* *
32485338 TAACACAAAATAAT
1 TAACATAAAATTAT
32485352 TA
1 TA
32485354 TAATATGCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
13 12 0.46
14 14 0.54
ACGTcount: A:0.60, C:0.09, G:0.00, T:0.30
Consensus pattern (14 bp):
TAACATAAAATTAT
Found at i:32485340 original size:13 final size:13
Alignment explanation
Indices: 32485311--32485349 Score: 60
Period size: 13 Copynumber: 2.9 Consensus size: 13
32485301 TTTCATTTTG
32485311 TAACATAAAATTAT
1 TAACATAAAA-TAT
32485325 TAACATAAAATAT
1 TAACATAAAATAT
*
32485338 TAACACAAAATA
1 TAACATAAAATA
32485350 ATTATAATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 14 0.58
14 10 0.42
ACGTcount: A:0.62, C:0.10, G:0.00, T:0.28
Consensus pattern (13 bp):
TAACATAAAATAT
Found at i:32486825 original size:40 final size:40
Alignment explanation
Indices: 32486769--32487121 Score: 494
Period size: 40 Copynumber: 8.9 Consensus size: 40
32486759 GAATACACAT
* * * *
32486769 CACCAGCATGATTGCTCTTCGGGACCTAGCCTGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
32486809 CACCAGCACGAATGCTCTTCGGGACTTAACCCTGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
32486849 CTCTAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
32486889 CACCAGCACGAATGCTCTTCGGGACTTAACCCGGAAATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
32486929 CACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
32486969 CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
32487009 CACTAGCACGAATGCTCTTCGGGACTTAACCCGGATATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
32487049 CACTAGCACGAATGCTCTTCGAGACTTAG-CCGAATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
32487088 CACCAGCACGAATGCTCTT-GGGACTTAGCCCGGA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGA
32487122 CATATAACTC
Statistics
Matches: 278, Mismatches: 34, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
38 8 0.03
39 30 0.11
40 240 0.86
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:32488668 original size:46 final size:46
Alignment explanation
Indices: 32488615--32488703 Score: 142
Period size: 46 Copynumber: 1.9 Consensus size: 46
32488605 TATATATACA
* *
32488615 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATGTC
1 CATCTCATACACATCTCACATTAGCCATTCGGCTTTACCACATGTC
* *
32488661 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACAT
1 CATCTCATACACATCTCACATTAGCCATTCGGCTTTACCACAT
32488704 ATATACACTT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAGCCATTCGGCTTTACCACATGTC
Found at i:32488753 original size:47 final size:47
Alignment explanation
Indices: 32488679--32488822 Score: 157
Period size: 47 Copynumber: 3.1 Consensus size: 47
32488669 ACACATTTCG
* * *
32488679 CATTAGCCATTCGGCTTTACCACATATATACACT-TCCAC-TTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACA-TGTCCACATTT-ATCA
* * *
32488726 CATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTTATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTCCACATTTATCA
* * * * *
32488773 CATTGGCCATTCGGCCTTATCACAAATGTGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTCCACATTTATCA
32488820 CAT
1 CAT
32488823 AAAATCCTAA
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
46 1 0.01
47 81 0.95
48 3 0.04
ACGTcount: A:0.26, C:0.28, G:0.10, T:0.35
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATACATGTCCACATTTATCA
Found at i:32490470 original size:14 final size:14
Alignment explanation
Indices: 32490451--32490493 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
32490441 TTTCATTTTG
32490451 TAACATAAAATTAT
1 TAACATAAAATTAT
32490465 TAACATAAAA-TAT
1 TAACATAAAATTAT
* *
32490478 TAACACAAAATAAT
1 TAACATAAAATTAT
32490492 TA
1 TA
32490494 TAATATGCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
13 12 0.46
14 14 0.54
ACGTcount: A:0.60, C:0.09, G:0.00, T:0.30
Consensus pattern (14 bp):
TAACATAAAATTAT
Found at i:32490480 original size:13 final size:13
Alignment explanation
Indices: 32490451--32490489 Score: 60
Period size: 13 Copynumber: 2.9 Consensus size: 13
32490441 TTTCATTTTG
32490451 TAACATAAAATTAT
1 TAACATAAAA-TAT
32490465 TAACATAAAATAT
1 TAACATAAAATAT
*
32490478 TAACACAAAATA
1 TAACATAAAATA
32490490 ATTATAATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 14 0.58
14 10 0.42
ACGTcount: A:0.62, C:0.10, G:0.00, T:0.28
Consensus pattern (13 bp):
TAACATAAAATAT
Found at i:32491965 original size:40 final size:40
Alignment explanation
Indices: 32491909--32492263 Score: 487
Period size: 40 Copynumber: 8.9 Consensus size: 40
32491899 GAATACACAT
* * * *
32491909 CACCAGCATGATTGCTCTTCGGGACCTAGCCTGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
32491949 CACCAGCACGAATGCTCTTCGGCACTTAACCCTGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
32491989 CTCTAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
32492029 CACCAGCACGAATGCTCTTCGGGACTTAACCCGGAAATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
32492069 CACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
32492109 CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
32492149 CACTAGCACGAATGCTCTTCGGGACATCA-CCCGGATATAT
1 CACCAGCACGAATGCTCTTCGGGAC-TTAGCCCGGATATAA
* * *
32492189 CACTAGCACGAATGCTCTTCGAGACTTAGCCCGAATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
32492229 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGA
32492264 CATATAACTC
Statistics
Matches: 276, Mismatches: 37, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
39 2 0.01
40 272 0.99
41 2 0.01
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Done.