Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 102 of 352
Found at i:32493813 original size:46 final size:46
Alignment explanation
Indices: 32493760--32493848 Score: 142
Period size: 46 Copynumber: 1.9 Consensus size: 46
32493750 TATATATACA
* *
32493760 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATGTC
1 CATCTCATACACATCTCACATTAGCCATTCGGCTTTACCACATGTC
* *
32493806 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACAT
1 CATCTCATACACATCTCACATTAGCCATTCGGCTTTACCACAT
32493849 ATATACATAT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAGCCATTCGGCTTTACCACATGTC
Found at i:32493898 original size:47 final size:47
Alignment explanation
Indices: 32493824--32493967 Score: 153
Period size: 47 Copynumber: 3.1 Consensus size: 47
32493814 ACACATTTCG
* * * *
32493824 CATTAGCCATTCGGCTTTACCACATATATACATATCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATATCCACATTCATCA
* * * * *
32493871 CATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTTATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATATCCACATTCATCA
* * * * * *
32493918 CATTGTCCATTCGGCCTTATCACAAATGTGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATATCCACATTCATCA
32493965 CAT
1 CAT
32493968 AAAATCCTAA
Statistics
Matches: 83, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 83 1.00
ACGTcount: A:0.27, C:0.28, G:0.10, T:0.35
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATACATATCCACATTCATCA
Found at i:32495616 original size:14 final size:14
Alignment explanation
Indices: 32495597--32495639 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
32495587 TTTCATTTTG
32495597 TAACATAAAATTAT
1 TAACATAAAATTAT
32495611 TAACATAAAA-TAT
1 TAACATAAAATTAT
* *
32495624 TAACACAAAATAAT
1 TAACATAAAATTAT
32495638 TA
1 TA
32495640 TAATATGCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
13 12 0.46
14 14 0.54
ACGTcount: A:0.60, C:0.09, G:0.00, T:0.30
Consensus pattern (14 bp):
TAACATAAAATTAT
Found at i:32495626 original size:13 final size:13
Alignment explanation
Indices: 32495597--32495635 Score: 60
Period size: 13 Copynumber: 2.9 Consensus size: 13
32495587 TTTCATTTTG
32495597 TAACATAAAATTAT
1 TAACATAAAA-TAT
32495611 TAACATAAAATAT
1 TAACATAAAATAT
*
32495624 TAACACAAAATA
1 TAACATAAAATA
32495636 ATTATAATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 14 0.58
14 10 0.42
ACGTcount: A:0.62, C:0.10, G:0.00, T:0.28
Consensus pattern (13 bp):
TAACATAAAATAT
Found at i:32498230 original size:46 final size:46
Alignment explanation
Indices: 32498132--32498345 Score: 175
Period size: 46 Copynumber: 4.7 Consensus size: 46
32498122 TAACTGTGTC
** * * *
32498132 GATGCATGTCCTGGACATGTCTTACACTAG-CA-CATCTCGTA-GCC
1 GATGCATGTCCCAGACATGTCTTACACTGGTTATCATCTCG-AGGCT
* * * *
32498176 GACGCATGTCCCAGACATATCTGACACTGGTTAACATCTCGAGGCT
1 GATGCATGTCCCAGACATGTCTTACACTGGTTATCATCTCGAGGCT
* * ** * * *
32498222 GATGCATGTCCCAGACATGTCTAACACTAGTCCTCGTCTCAATGCT
1 GATGCATGTCCCAGACATGTCTTACACTGGTTATCATCTCGAGGCT
* * * * *
32498268 GATGTCATGTCCCAAACATGGTCTTACACTGGCTATCATAAT-GTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGTTATCAT-CTCGAGGCT
32498316 GATGCATGTCCCAGACATGTCTTACACTGG
1 GATGCATGTCCCAGACATGTCTTACACTGG
32498346 CACACAAATC
Statistics
Matches: 133, Mismatches: 31, Indels: 10
0.76 0.18 0.06
Matches are distributed among these distances:
44 24 0.18
45 2 0.02
46 61 0.46
47 26 0.20
48 19 0.14
49 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTGGTTATCATCTCGAGGCT
Found at i:32500450 original size:13 final size:13
Alignment explanation
Indices: 32500432--32500457 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32500422 TTGAAACTAG
32500432 ACTCATTAAGGAT
1 ACTCATTAAGGAT
32500445 ACTCATTAAGGAT
1 ACTCATTAAGGAT
32500458 GCTAATCATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ACTCATTAAGGAT
Found at i:32502582 original size:44 final size:44
Alignment explanation
Indices: 32502502--32502585 Score: 105
Period size: 44 Copynumber: 1.9 Consensus size: 44
32502492 CATATATTGT
* * * *
32502502 ATCCATTATGAACTTGGACCAATTCAACAAGTTCAGATGCTCAC
1 ATCCATAATAAACTTGGACCAACTCAACAAGCTCAGATGCTCAC
* **
32502546 ATCCATAATAAACTTGGACCAACTGAATGAGCTCAGATGC
1 ATCCATAATAAACTTGGACCAACTCAACAAGCTCAGATGC
32502586 CTCATATATA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
44 33 1.00
ACGTcount: A:0.36, C:0.24, G:0.15, T:0.25
Consensus pattern (44 bp):
ATCCATAATAAACTTGGACCAACTCAACAAGCTCAGATGCTCAC
Found at i:32503303 original size:20 final size:18
Alignment explanation
Indices: 32503266--32503316 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
32503256 CTATAGCAAC
32503266 TCACAATTT-CAATTATT
1 TCACAATTTACAATTATT
32503283 TCACACATTTACAACTTATT
1 TCACA-ATTTACAA-TTATT
*
32503303 TTACAACTTTACAA
1 TCACAA-TTTACAA
32503317 AATAGCCCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 4 0.14
20 16 0.55
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (18 bp):
TCACAATTTACAATTATT
Found at i:32506008 original size:47 final size:47
Alignment explanation
Indices: 32505932--32506062 Score: 181
Period size: 47 Copynumber: 2.8 Consensus size: 47
32505922 CACAATCGAT
* * *
32505932 AAGTACCTATATCATGGCCCGTAGCCAAATCAAGGTAACTTATCCCA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCACA
* * * * *
32505979 GAGTACCTATACCATGACCTGTAGACAAATCAAGGTAACTCCTCACA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCACA
*
32506026 AAATACCTATACCATGGCCCGTAGCCAAATCAAGGTA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTA
32506063 TTTACTCACA
Statistics
Matches: 71, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.36, C:0.27, G:0.15, T:0.21
Consensus pattern (47 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCACA
Found at i:32507388 original size:20 final size:20
Alignment explanation
Indices: 32507363--32507413 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
32507353 GAGGCAATGA
*
32507363 ACACGCCCGTGCGTATTGGG
1 ACACGCCCGTGCGCATTGGG
* * *
32507383 ACACGCTCATGTGCATTGGG
1 ACACGCCCGTGCGCATTGGG
32507403 ACACGCCCGTG
1 ACACGCCCGTG
32507414 TCCCTTACCC
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.18, C:0.31, G:0.31, T:0.20
Consensus pattern (20 bp):
ACACGCCCGTGCGCATTGGG
Found at i:32509587 original size:23 final size:23
Alignment explanation
Indices: 32509557--32509604 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
32509547 TGCACATAGA
32509557 ATTTCTTCATGAAACTTTAACAC
1 ATTTCTTCATGAAACTTTAACAC
32509580 ATTTCTTCATGAAACTTTAACAC
1 ATTTCTTCATGAAACTTTAACAC
32509603 AT
1 AT
32509605 GCTTATTCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.35, C:0.21, G:0.04, T:0.40
Consensus pattern (23 bp):
ATTTCTTCATGAAACTTTAACAC
Found at i:32511010 original size:43 final size:42
Alignment explanation
Indices: 32510865--32511011 Score: 125
Period size: 43 Copynumber: 3.4 Consensus size: 42
32510855 TATCCTAGAT
* * * * *
32510865 ATGGTCTTACATGTTAT-CACATATCGATGCCACTGTCCCAAAT
1 ATGGTCTTACACGTAATCCA-ATA-CAATGCCAATGTCCCAAAC
* * * * * * *
32510908 AGGGTCTTACACGAAATCGATTAACAATGCTAATGTCTCAGAC
1 ATGGTCTTACACGTAATCCAAT-ACAATGCCAATGTCCCAAAC
*
32510951 ATGGTCTTACACGTAATCTCAATACAATGCCAATATCCCAAAC
1 ATGGTCTTACACGTAATC-CAATACAATGCCAATGTCCCAAAC
*
32510994 ATGGTCTTACATGTAATC
1 ATGGTCTTACACGTAATC
32511012 ACATGTCAAA
Statistics
Matches: 80, Mismatches: 21, Indels: 6
0.75 0.20 0.06
Matches are distributed among these distances:
43 76 0.95
44 4 0.05
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (42 bp):
ATGGTCTTACACGTAATCCAATACAATGCCAATGTCCCAAAC
Found at i:32513055 original size:17 final size:17
Alignment explanation
Indices: 32513033--32513065 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
32513023 CCTCCCGAAT
32513033 AATATGGGTGCATTAAG
1 AATATGGGTGCATTAAG
32513050 AATATGGGTGCATTAA
1 AATATGGGTGCATTAA
32513066 ATGTTTCATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.30
Consensus pattern (17 bp):
AATATGGGTGCATTAAG
Found at i:32522080 original size:39 final size:39
Alignment explanation
Indices: 32522026--32522282 Score: 399
Period size: 39 Copynumber: 6.5 Consensus size: 39
32522016 TAATGGAGAA
*
32522026 TTATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
32522065 TTATATTCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
32522104 TTATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
32522143 TTATATCCGGGCTAAGTCTCGAAGGCAATCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
32522182 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * * *
32522221 TTATATCCGGGCTAAAGTCTCGCAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
32522260 TTATATCCGGGCTTAAAGTCCCG
1 TTATATCCGGGC-T-AAGTCCCG
32522283 CATGCTTTGT
Statistics
Matches: 202, Mismatches: 14, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
39 182 0.90
40 20 0.10
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.30
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:32524206 original size:26 final size:26
Alignment explanation
Indices: 32524157--32524207 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
32524147 TACTTTCCAT
*
32524157 ATCACATATTTATATAACATGTATAA
1 ATCACATATTTATATAACAAGTATAA
* **
32524183 ATCACATCTTTATATTTCAAGTATA
1 ATCACATATTTATATAACAAGTATA
32524208 TTTTCATAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.41, C:0.14, G:0.04, T:0.41
Consensus pattern (26 bp):
ATCACATATTTATATAACAAGTATAA
Found at i:32524996 original size:17 final size:17
Alignment explanation
Indices: 32524974--32525006 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
32524964 TTTTTATCAT
32524974 TTATCACTT-ATCGGGCA
1 TTATCA-TTGATCGGGCA
32524991 TTATCATTGATCGGGC
1 TTATCATTGATCGGGC
32525007 TTTTTCGATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.13
17 13 0.87
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.36
Consensus pattern (17 bp):
TTATCATTGATCGGGCA
Found at i:32539876 original size:18 final size:19
Alignment explanation
Indices: 32539838--32539875 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
32539828 TCAATTTTAA
32539838 TTAAT-TAATTTAAATATT
1 TTAATATAATTTAAATATT
32539856 TTAATATAATTTAAATATT
1 TTAATATAATTTAAATATT
32539875 T
1 T
32539876 ATATGAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TTAATATAATTTAAATATT
Found at i:32540601 original size:136 final size:136
Alignment explanation
Indices: 32540394--32540650 Score: 415
Period size: 136 Copynumber: 1.9 Consensus size: 136
32540384 TTTAGATTAA
* * * *
32540394 TTTTTTCTTACTAATTACCTTTAATGGTTGGCATATAATTTATAGATTAGATTGGAGACTAATGA
1 TTTTTTCCTACTAATTACCTTTAATGGTTGGCACATAATTTATAGACTAGATTGGAGACCAATGA
* * *
32540459 CAGAGCCAAGGGGCTGACAGAGGCCAACCTTCCCTAAAATAGAAAATTTTTTATTTTTCTTCTAG
66 CAGAGCCAAGGGACTGACAGAGGCCAACCCTCCCTAAAATAGAAAAATTTTTATTTTTCTTCTAG
32540524 ACTATT
131 ACTATT
* *
32540530 TTTTTTCCTACTAATTACCTTTAATGGTTGGCACATAATTTATAGACTAGATTGGGGACCAATGG
1 TTTTTTCCTACTAATTACCTTTAATGGTTGGCACATAATTTATAGACTAGATTGGAGACCAATGA
* *
32540595 CTGAGCCAAGGGACTGACAGAGGCCATCCCTCCCTAAAATAGAAAAATTTTTATTT
66 CAGAGCCAAGGGACTGACAGAGGCCAACCCTCCCTAAAATAGAAAAATTTTTATTT
32540651 AGATTTTTTA
Statistics
Matches: 110, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
136 110 1.00
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Consensus pattern (136 bp):
TTTTTTCCTACTAATTACCTTTAATGGTTGGCACATAATTTATAGACTAGATTGGAGACCAATGA
CAGAGCCAAGGGACTGACAGAGGCCAACCCTCCCTAAAATAGAAAAATTTTTATTTTTCTTCTAG
ACTATT
Found at i:32541379 original size:11 final size:11
Alignment explanation
Indices: 32541373--32541404 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
32541363 TGAAATTTTC
32541373 TCAAAATTCTA
1 TCAAAATTCTA
32541384 TCAAAATTCTA
1 TCAAAATTCTA
*
32541395 TCAAATTTCT
1 TCAAAATTCT
32541405 TTGTTTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.41, C:0.19, G:0.00, T:0.41
Consensus pattern (11 bp):
TCAAAATTCTA
Found at i:32541401 original size:32 final size:32
Alignment explanation
Indices: 32541341--32541402 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
32541331 AATATTCCCT
* *
32541341 TCAAAAATCTATCAAATTTCATTGAAATTTTC
1 TCAAAAATCTATCAAAATTCATTCAAATTTTC
*
32541373 TCAAAATTCTATCAAAATTC-TATCAAATTT
1 TCAAAAATCTATCAAAATTCAT-TCAAATTT
32541403 CTTTGTTTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
31 1 0.04
32 25 0.96
ACGTcount: A:0.42, C:0.16, G:0.02, T:0.40
Consensus pattern (32 bp):
TCAAAAATCTATCAAAATTCATTCAAATTTTC
Found at i:32541602 original size:48 final size:47
Alignment explanation
Indices: 32541538--32541647 Score: 143
Period size: 48 Copynumber: 2.3 Consensus size: 47
32541528 AGTGATAATT
*
32541538 TTAAATTTTCAATACTATTCGATATTT-TTTCAATTTATGCAAATT-TAA
1 TTAAA-TTTCAATACTATTCGATATTTACTTC-ATTTATGC-AATTATAA
*
32541586 TTAAATTTACAATACTATTTGATATTTACTTCATTTATGCAATTATAA
1 TTAAATTT-CAATACTATTCGATATTTACTTCATTTATGCAATTATAA
32541634 TTAAAATTTCAATA
1 TT-AAATTTCAATA
32541648 TTGCTTGATT
Statistics
Matches: 56, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
47 7 0.12
48 40 0.71
49 9 0.16
ACGTcount: A:0.38, C:0.10, G:0.04, T:0.48
Consensus pattern (47 bp):
TTAAATTTCAATACTATTCGATATTTACTTCATTTATGCAATTATAA
Found at i:32541656 original size:48 final size:48
Alignment explanation
Indices: 32541538--32541671 Score: 132
Period size: 48 Copynumber: 2.8 Consensus size: 48
32541528 AGTGATAATT
* *
32541538 TTAAATTTTCAATACTA-TTCGATATTT-TTTCAATTTATGCAAATTTAA
1 TTAAATTTACAATACTACTT-GATATTTACTTC-ATTTATGCAAATTTAA
*
32541586 TTAAATTTACAATACTATTTGATATTTACTTCATTTATGC-AATTATAA
1 TTAAATTTACAATACTACTTGATATTTACTTCATTTATGCAAATT-TAA
* * * **
32541634 TTAAAATTT-CAATATTGCTTGATTTTTTTTTCATTTAT
1 TT-AAATTTACAATACTACTTGATATTTACTTCATTTAT
32541672 AATGTTTGCA
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
47 4 0.05
48 59 0.80
49 11 0.15
ACGTcount: A:0.34, C:0.10, G:0.04, T:0.52
Consensus pattern (48 bp):
TTAAATTTACAATACTACTTGATATTTACTTCATTTATGCAAATTTAA
Found at i:32553914 original size:18 final size:18
Alignment explanation
Indices: 32553879--32553921 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
32553869 TGCTAGGTGC
*
32553879 GTATCCTAGCCTTCATAT
1 GTATCCTACCCTTCATAT
32553897 GTATCCTAACCCTT-ATAT
1 GTATCCT-ACCCTTCATAT
*
32553915 GTTTCCT
1 GTATCCT
32553922 TTTCCTAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 17 0.77
19 5 0.23
ACGTcount: A:0.21, C:0.28, G:0.09, T:0.42
Consensus pattern (18 bp):
GTATCCTACCCTTCATAT
Found at i:32557640 original size:126 final size:125
Alignment explanation
Indices: 32557412--32557919 Score: 732
Period size: 126 Copynumber: 4.0 Consensus size: 125
32557402 TTATAGCTTC
* * *
32557412 ATTTTTCTACGAACTACTGCATCAAAAGAGCGTCCACGTGGGAGCTTTTTTTAAGAAATTTTATT
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCAA-AAATTTTATT
32557477 GACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTCGAAATT
65 GACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTC-AAATT
* *
32557539 ATTTTTCTGCGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCAAAAATTTTGTTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCAAAAATTTTATTG
* *
32557604 ACAGTGCATCCTGCTTGAAGCGTTTTCGACATTATTTGTTCAGAAATGTCTACTCAAAATT
66 ACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTC-AAATT
* * * * *
32557665 ATTTTTCTACAAACTACTGTAGCAAAAGAGCATCCATGTAGGAGCTTTTTTCAGAAATTTT-TCT
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCAAAAATTTTAT-T
* * * * *
32557729 GACAGTGCTTCCTGCTTGTAGCGTTTTCGACACTATTTTTTTAGAAACGTCTATTCAGAATT
65 GACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTCA-AATT
* * * * *
32557791 ATTTTTCTAC-AACCTACTGTAGCGAAAGAGCGTCCACTTGGGAGCCTTTTTCAGAAATTTTACT
1 ATTTTTCTACGAA-CTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCAAAAATTTTATT
*
32557855 GACAGTGCATCCTACTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTCCAAATT
65 GACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACT-CAAATT
32557917 ATT
1 ATT
32557920 CTTGTAGAAA
Statistics
Matches: 342, Mismatches: 34, Indels: 11
0.88 0.09 0.03
Matches are distributed among these distances:
125 4 0.01
126 286 0.84
127 52 0.15
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (125 bp):
ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCAAAAATTTTATTG
ACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTCAAATT
Found at i:32558478 original size:20 final size:19
Alignment explanation
Indices: 32558453--32558523 Score: 103
Period size: 19 Copynumber: 3.8 Consensus size: 19
32558443 ACGATTATGT
*
32558453 ATCAATTAACCCTAAATTAA
1 ATCAATTAACCCT-AATTTA
32558473 ATCAATTAACCCTAATTTA
1 ATCAATTAACCCTAATTTA
32558492 ATCAA-T--CCCTAATTTA
1 ATCAATTAACCCTAATTTA
32558508 ATCAATTAACCCTAAT
1 ATCAATTAACCCTAAT
32558524 ACCCTAAAAT
Statistics
Matches: 47, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
16 15 0.32
17 1 0.02
18 1 0.02
19 17 0.36
20 13 0.28
ACGTcount: A:0.44, C:0.23, G:0.00, T:0.34
Consensus pattern (19 bp):
ATCAATTAACCCTAATTTA
Found at i:32558503 original size:16 final size:16
Alignment explanation
Indices: 32558482--32558513 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
32558472 AATCAATTAA
32558482 CCCTAATTTAATCAAT
1 CCCTAATTTAATCAAT
32558498 CCCTAATTTAATCAAT
1 CCCTAATTTAATCAAT
32558514 TAACCCTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.25, G:0.00, T:0.38
Consensus pattern (16 bp):
CCCTAATTTAATCAAT
Found at i:32558690 original size:16 final size:16
Alignment explanation
Indices: 32558644--32558698 Score: 60
Period size: 16 Copynumber: 3.4 Consensus size: 16
32558634 CCCTAAATCT
*
32558644 TAAAAAACCCTAACCC
1 TAAAAAATCCTAACCC
*
32558660 TAAATCAAT--TAAACCC
1 TAAA-AAATCCT-AACCC
32558676 TAAAAAATCCTAACCC
1 TAAAAAATCCTAACCC
32558692 TAAAAAA
1 TAAAAAA
32558699 CACGGGCAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
15 4 0.12
16 25 0.78
17 3 0.09
ACGTcount: A:0.55, C:0.27, G:0.00, T:0.18
Consensus pattern (16 bp):
TAAAAAATCCTAACCC
Found at i:32561510 original size:27 final size:26
Alignment explanation
Indices: 32561480--32561584 Score: 75
Period size: 27 Copynumber: 3.9 Consensus size: 26
32561470 AATAAACACG
*
32561480 TCATGAAAAAAAAGCCTTTGTGGCAAA
1 TCATGAAAAAAAA-CCTTTATGGCAAA
* * *
32561507 TCATGAAAGAAAAACCATTGTGGAAAA
1 TCATGAAA-AAAAACCTTTATGGCAAA
** * * **
32561534 TTGTTAAAGAAAAGCCTTTATGGTGAA
1 TCATGAAA-AAAAACCTTTATGGCAAA
*
32561561 TCATGACAGAAAAACCTTTATGGC
1 TCATGA-AAAAAAACCTTTATGGC
32561585 GAGCTCTGCA
Statistics
Matches: 60, Mismatches: 16, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
27 54 0.90
28 6 0.10
ACGTcount: A:0.43, C:0.13, G:0.19, T:0.25
Consensus pattern (26 bp):
TCATGAAAAAAAACCTTTATGGCAAA
Found at i:32564790 original size:16 final size:16
Alignment explanation
Indices: 32564771--32564810 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
32564761 AAATAAAGGT
*
32564771 TACGCCTCAGAAAGAG
1 TACGCCTAAGAAAGAG
* *
32564787 TACGCTTAAGGAAGAG
1 TACGCCTAAGAAAGAG
32564803 TACGCCTA
1 TACGCCTA
32564811 GAGTATTGGC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (16 bp):
TACGCCTAAGAAAGAG
Found at i:32567032 original size:24 final size:24
Alignment explanation
Indices: 32567000--32567047 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
32566990 TAATTAAATT
32567000 GCACAAAATCACCTCAATGCTTAC
1 GCACAAAATCACCTCAATGCTTAC
32567024 GCACAAAATCACCTCAATGCTTAC
1 GCACAAAATCACCTCAATGCTTAC
32567048 TTACCATTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.33, G:0.08, T:0.21
Consensus pattern (24 bp):
GCACAAAATCACCTCAATGCTTAC
Found at i:32570436 original size:26 final size:27
Alignment explanation
Indices: 32570406--32570459 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
32570396 TCACAAAAGT
*
32570406 TAGTCATTT-ACGCACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
32570432 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
32570459 T
1 T
32570460 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:32570635 original size:27 final size:27
Alignment explanation
Indices: 32570460--32570828 Score: 373
Period size: 27 Copynumber: 13.4 Consensus size: 27
32570450 GGGGCAAAAT
* * ** *
32570460 GGTAATTTTACCCCACAATGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
32570487 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* ** *
32570514 GGTATTTCTACCCTGTAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
32570541 -GAAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
32570567 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
32570594 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
32570621 GGTAATTGC-ATCCTACAGGGGTATTTC
1 GGTAATT-CTACCCTACAGGGGTATTTC
** **
32570648 AATAATTCTACCCTGTAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
32570675 GATATTTTGGTATTCCTACCCTACAAGGGTATTTC
1 GGTA-------ATT-CTACCCTACAGGGGTATTTC
* *
32570710 GATAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
32570737 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** * * *
32570764 AATAATTCTAGCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
32570791 GGTAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
32570818 GGTAATTCTAC
1 GGTAATTCTAC
32570829 AACTTATCCA
Statistics
Matches: 286, Mismatches: 45, Indels: 22
0.81 0.13 0.06
Matches are distributed among these distances:
26 21 0.07
27 237 0.83
28 4 0.01
34 3 0.01
35 21 0.07
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:32570742 original size:89 final size:89
Alignment explanation
Indices: 32570588--32570763 Score: 282
Period size: 89 Copynumber: 2.0 Consensus size: 89
32570578 CCTACAGGGG
* *
32570588 TATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTAATTGCATCCTACAGGGGTATTTCAATAA
1 TATTTCGGTATTCCTACCCTACAAGGGTATTTCGATAATTGCATCCTACAGGGGTATTTCAATAA
**
32570653 TTCTACCCTGTAGGGGTATTTCGA
66 TTCTACCCTACAGGGGTATTTCGA
* *
32570677 TATTTTGGTATTCCTACCCTACAAGGGTATTTCGATAATT-CTATCCTACAGGGGTATTTCGATA
1 TATTTCGGTATTCCTACCCTACAAGGGTATTTCGATAATTGC-ATCCTACAGGGGTATTTCAATA
32570741 ATTCTACCCTACAGGGGTATTTC
65 ATTCTACCCTACAGGGGTATTTC
32570764 AATAATTCTA
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
88 1 0.01
89 79 0.99
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.38
Consensus pattern (89 bp):
TATTTCGGTATTCCTACCCTACAAGGGTATTTCGATAATTGCATCCTACAGGGGTATTTCAATAA
TTCTACCCTACAGGGGTATTTCGA
Found at i:32570765 original size:116 final size:116
Alignment explanation
Indices: 32570561--32570828 Score: 340
Period size: 116 Copynumber: 2.4 Consensus size: 116
32570551 CCTACAGGGG
* * * *
32570561 TATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTAA
1 TATTTCGGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAAGGGTATTTCGATAA
* *
32570626 TTGCATCCTACAGGGGTATTTCAATAATTCTACCCTGTAGGGGTATTTCGA
66 TTGCACCCTACAGGGGTATTTCAATAATTCTACCCTATAGGGGTATTTCGA
* * *
32570677 TATTTTGGT-ATTCCTACCCTACAAGGGTATTTCGATAATTCTATCCTACAGGGGTATTTCGATA
1 TATTTCGGTAATT-CTACCCTACAAGGGTATTTCGATAATTCTACCCTACAAGGGTATTTCGATA
*
32570741 ATT-CTACCCTACAGGGGTATTTCAATAATTCTAGCCTATAGGGG----T--A
65 ATTGC-ACCCTACAGGGGTATTTCAATAATTCTACCCTATAGGGGTATTTCGA
* *
32570787 T-TTT-GGTAATTCTACCTTACAAGGGTATTTCGGTAATTCTAC
1 TATTTCGGTAATTCTACCCTACAAGGGTATTTCGATAATTCTAC
32570829 AACTTATCCA
Statistics
Matches: 136, Mismatches: 13, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
108 31 0.23
109 6 0.04
110 2 0.01
112 1 0.01
115 4 0.03
116 92 0.68
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (116 bp):
TATTTCGGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAAGGGTATTTCGATAA
TTGCACCCTACAGGGGTATTTCAATAATTCTACCCTATAGGGGTATTTCGA
Found at i:32570813 original size:143 final size:143
Alignment explanation
Indices: 32570551--32570818 Score: 367
Period size: 143 Copynumber: 1.9 Consensus size: 143
32570541 GAAATTCTAT
* * * *
32570551 CCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGT
1 CCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAAGGGT
** * ** *
32570616 ATTTCGGTAATTGCATCCTACAGGGGTATTTCAATAATTCTACCCTGTAGGGGTATTTCGATATT
66 ATTTCAATAATTGCAGCCTACAGGGGTATTTCAATAATTCTACCCTACAAGGGTATTTCGATATT
32570681 TTGGTATTCCTAC
131 TTGGTATTCCTAC
* *
32570694 CCTACAAGGGTATTTCGATAATTCTATCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGT
1 CCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAAGGGT
* *** *
32570759 ATTTCAATAATT-CTAGCCTATAGGGGTATTTTGGTAATTCTACCTTACAAGGGTATTTCG
66 ATTTCAATAATTGC-AGCCTACAGGGGTATTTCAATAATTCTACCCTACAAGGGTATTTCG
32570819 GTAATTCTAC
Statistics
Matches: 107, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
142 1 0.01
143 106 0.99
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.36
Consensus pattern (143 bp):
CCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAAGGGT
ATTTCAATAATTGCAGCCTACAGGGGTATTTCAATAATTCTACCCTACAAGGGTATTTCGATATT
TTGGTATTCCTAC
Found at i:32578285 original size:27 final size:27
Alignment explanation
Indices: 32578252--32578503 Score: 342
Period size: 27 Copynumber: 9.3 Consensus size: 27
32578242 GCTATCTCGA
*
32578252 TAATTCTACCTTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
* * *
32578279 TATTTCTACCCTACAAGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCGG
*
32578306 TAATTCTATCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
* *
32578333 TAATTCTACCCTATAGGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCGG
* * * *
32578360 TATTTCTACCTTACAAGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCGG
* * *
32578387 TAATTCTATCATACAAGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
* *
32578414 TATTTCTACCCTACAAGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
*
32578441 TAATTCTATCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
*
32578468 TAATTTTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
32578495 TAATTCTAC
1 TAATTCTAC
32578504 AACTTATCCA
Statistics
Matches: 197, Mismatches: 28, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 197 1.00
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.38
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCGG
Found at i:32578353 original size:81 final size:81
Alignment explanation
Indices: 32578252--32578503 Score: 378
Period size: 81 Copynumber: 3.1 Consensus size: 81
32578242 GCTATCTCGA
*
32578252 TAATTCTACCTTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTATCC
1 TAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTATCC
32578317 TACAGGGGTATTTCGG
66 TACAGGGGTATTTCGG
* * * *
32578333 TAATTCTACCCTATAGGGGTATTTCAGTATTTCTACCTTACAAGGGTATTTCAGTAATTCTATCA
1 TAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTATCC
*
32578398 TACAAGGGTATTTCGG
66 TACAGGGGTATTTCGG
* * * * * * * *
32578414 TATTTCTACCCTACAAGGGTATTTCGGTAATTCTATCCTACAGGGGTATTTCGGTAATTTTACCC
1 TAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTATCC
32578479 TACAGGGGTATTTCGG
66 TACAGGGGTATTTCGG
32578495 TAATTCTAC
1 TAATTCTAC
32578504 AACTTATCCA
Statistics
Matches: 151, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 151 1.00
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.38
Consensus pattern (81 bp):
TAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTATCC
TACAGGGGTATTTCGG
Found at i:32580037 original size:18 final size:18
Alignment explanation
Indices: 32580014--32580050 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
32580004 TTGGGAAGCC
*
32580014 TTTGTGGCAAGTTATCTG
1 TTTGTGGCAAGTTACCTG
*
32580032 TTTGTGGCAGGTTACCTG
1 TTTGTGGCAAGTTACCTG
32580050 T
1 T
32580051 AAAGCCCATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.14, C:0.14, G:0.30, T:0.43
Consensus pattern (18 bp):
TTTGTGGCAAGTTACCTG
Found at i:32582699 original size:11 final size:10
Alignment explanation
Indices: 32582642--32582698 Score: 53
Period size: 11 Copynumber: 5.5 Consensus size: 10
32582632 TATATATAAC
*
32582642 AATATAATAT
1 AATAAAATAT
32582652 GAATAAAATAT
1 -AATAAAATAT
**
32582663 AAGGAAATAT
1 AATAAAATAT
32582673 AATATAAA-AT
1 AATA-AAATAT
32582683 AATAAGAATAT
1 AATAA-AATAT
32582694 AATAA
1 AATAA
32582699 GTATTTTGCA
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
9 1 0.03
10 18 0.47
11 19 0.50
ACGTcount: A:0.65, C:0.00, G:0.07, T:0.28
Consensus pattern (10 bp):
AATAAAATAT
Found at i:32583216 original size:12 final size:11
Alignment explanation
Indices: 32583193--32583222 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
32583183 AATACAATTT
32583193 TATAAAAAATA
1 TATAAAAAATA
32583204 TATAAAGAAATA
1 TATAAA-AAATA
32583216 TATAAAA
1 TATAAAA
32583223 TAAAATATAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (11 bp):
TATAAAAAATA
Found at i:32584928 original size:30 final size:30
Alignment explanation
Indices: 32584892--32584951 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
32584882 AAGCACGTGA
*
32584892 AAGCTAAATTAGTTATGATTTTGATTTGTT
1 AAGCTAAATTAGCTATGATTTTGATTTGTT
32584922 AAGCTAAATTAGCTATGATTTTGATTTGTT
1 AAGCTAAATTAGCTATGATTTTGATTTGTT
32584952 CCTTGTAAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.30, C:0.05, G:0.17, T:0.48
Consensus pattern (30 bp):
AAGCTAAATTAGCTATGATTTTGATTTGTT
Found at i:32585112 original size:236 final size:236
Alignment explanation
Indices: 32584709--32585136 Score: 712
Period size: 236 Copynumber: 1.8 Consensus size: 236
32584699 TATGTCTTCA
* *
32584709 ATTTGTTCCTTGTAAACACAAGGATACCAAACCATCTTGGATCTACTTCAGTCTAATCATCTGAA
1 ATTTGTTCCTTGTAAACACAAGGATACCAAACCATCTTGGATCTACTTCAGTATAAACATCTGAA
** * * * * *
32584774 GGTTAGATCTGCTATGTGTCTACCCTCCGTCGAATATGGAGACGCCAAACTTTGATTTGTTCTCT
66 GGCCAGACCTGCTATGTATCTACCCTCCATCGAATATGGAGACGCCAAACTTCGATTTGTTCCCT
*
32584839 GACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAGCACGTGAAAGCTAAATTAG
131 GACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAGCACGTGAAAGCCAAATTAG
32584904 TTATGATTTTGATTTGTTAAGCTAAATTAGCTATGATTTTG
196 TTATGATTTTGATTTGTTAAGCTAAATTAGCTATGATTTTG
* * *
32584945 ATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAA
1 ATTTGTTCCTTGTAAACACAAGGATACCAAACCATCTTGGATCTACTTCAGTATAAACATCTGAA
*
32585010 GGCCAGACCTGCTATGTATCTACTCTCCATCGAATATGGAGACGCCAAACTTCGATTTGTTCCCT
66 GGCCAGACCTGCTATGTATCTACCCTCCATCGAATATGGAGACGCCAAACTTCGATTTGTTCCCT
* *
32585075 GACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAAT
131 GACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAGCACGTGAAAGCCAAAT
32585137 CAGCTATGTC
Statistics
Matches: 176, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
236 176 1.00
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (236 bp):
ATTTGTTCCTTGTAAACACAAGGATACCAAACCATCTTGGATCTACTTCAGTATAAACATCTGAA
GGCCAGACCTGCTATGTATCTACCCTCCATCGAATATGGAGACGCCAAACTTCGATTTGTTCCCT
GACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAGCACGTGAAAGCCAAATTAG
TTATGATTTTGATTTGTTAAGCTAAATTAGCTATGATTTTG
Found at i:32585306 original size:207 final size:207
Alignment explanation
Indices: 32584946--32585398 Score: 818
Period size: 207 Copynumber: 2.2 Consensus size: 207
32584936 ATGATTTTGA
* * *
32584946 TTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAG
1 TTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATATGCTTCAGTATAAACATCTGAAG
*
32585011 GCCAGACCTGCTATGTATCTACTCTCCATCGAATATGGAGACGCCAAACTTCGATTTGTTCCCTG
66 GCCAGACCTGCTATATATCTACTCTCCATCGAATATGGAGACGCCAAACTTCGATTTGTTCCCTG
32585076 ACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCAGC
131 ACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCAGC
32585141 TATGTCTTCGAT
196 TATGTCTTCGAT
*
32585153 TTTGATCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATATGCTTCAGTATAAACATCTGAAG
1 TTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATATGCTTCAGTATAAACATCTGAAG
* * *
32585218 GCCAGATCTGCTATATATCTACTCTCTATCGAATATGGAGACGCCAAACTTC-AGTTTGTTCTCT
66 GCCAGACCTGCTATATATCTACTCTCCATCGAATATGGAGACGCCAAACTTCGA-TTTGTTCCCT
32585282 GACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCAG
130 GACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCAG
32585347 CTATGTCTTCGAT
195 CTATGTCTTCGAT
32585360 TTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGG
1 TTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGG
32585399 TTCTTGCTTC
Statistics
Matches: 236, Mismatches: 9, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
206 1 0.00
207 235 1.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.30
Consensus pattern (207 bp):
TTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATATGCTTCAGTATAAACATCTGAAG
GCCAGACCTGCTATATATCTACTCTCCATCGAATATGGAGACGCCAAACTTCGATTTGTTCCCTG
ACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCAGC
TATGTCTTCGAT
Found at i:32590328 original size:27 final size:27
Alignment explanation
Indices: 32590311--32590488 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
32590301 ATATTAAGTC
* *
32590311 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAAAT
*
32590338 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTATATAATCAAAT
* *
32590365 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTATATAATCAAA-T
*** ** *
32590393 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATATAATCAAAT
* **
32590420 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTAT-ATAATCAAAT
* * *
32590447 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTATATAATCAAAT
32590474 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32590489 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAAAT
Found at i:32590450 original size:82 final size:81
Alignment explanation
Indices: 32590332--32590487 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
32590322 TGCTATATAA
*
32590332 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
32590397 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
32590414 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
32590478 CACTTAGTGC
65 CACTTAGTGC
32590488 TGTACAATTT
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 16 0.24
82 52 0.76
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:32598234 original size:27 final size:27
Alignment explanation
Indices: 32598204--32598381 Score: 189
Period size: 27 Copynumber: 6.6 Consensus size: 27
32598194 ATATTGAGTC
* * *
32598204 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* * *
32598231 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
*
32598258 CGCACGCTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
** * *
32598286 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
*
32598313 CGCACACTTAGTGC-ATCATATTC-ACTT
1 CGCACACTTAGTGCTA-CATAGTCAAC-T
* *
32598340 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
32598367 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32598382 GTACAATTTA
Statistics
Matches: 126, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
26 1 0.01
27 101 0.80
28 24 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:32598343 original size:82 final size:81
Alignment explanation
Indices: 32598225--32598380 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
32598215 TGCTATATAA
* * *
32598225 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACGCTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
32598290 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
32598307 TCAATTCGCACACTTAGTGC-ATCATATTCACTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
32598371 CACTTAGTGC
65 CACTTAGTGC
32598381 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:32608314 original size:21 final size:20
Alignment explanation
Indices: 32608290--32608341 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 20
32608280 ATAATAATAT
*
32608290 AATATGAATAAAATATAAGGA-
1 AATAT-AATAAAA-ATAAGAAG
32608311 AATATAATATAAAATAAGAAG
1 AATATAATA-AAAATAAGAAG
32608332 AATATAATAA
1 AATATAATAA
32608342 GTATTTTGCA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
20 11 0.39
21 17 0.61
ACGTcount: A:0.65, C:0.00, G:0.10, T:0.25
Consensus pattern (20 bp):
AATATAATAAAAATAAGAAG
Found at i:32608409 original size:14 final size:14
Alignment explanation
Indices: 32608390--32608419 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
32608380 AAAAAAACAA
*
32608390 AATAAATAATATAT
1 AATAAAAAATATAT
32608404 AATAAAAAATATAT
1 AATAAAAAATATAT
32608418 AA
1 AA
32608420 GAAAGATAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (14 bp):
AATAAAAAATATAT
Found at i:32608873 original size:13 final size:13
Alignment explanation
Indices: 32608842--32608967 Score: 51
Period size: 13 Copynumber: 8.9 Consensus size: 13
32608832 CAATTTTATA
32608842 AAAATATATAAA-
1 AAAATATATAAAT
*
32608854 GAAATATATAAAT
1 AAAATATATAAAT
32608867 AAAATATACAATATAAT
1 AAAATAT---ATA-AAT
* * *
32608884 ATAATTTATAGAT
1 AAAATATATAAAT
32608897 AAAATATATGATAAT
1 AAAATATAT-A-AAT
32608912 AAGAATAATGGATAGTAAT
1 AA-AAT-AT--ATA--AAT
*
32608931 AATAATATATAACT
1 AA-AATATATAAAT
* *
32608945 AATATTTAT-AA-
1 AAAATATATAAAT
32608956 AAAATATATAAA
1 AAAATATATAAA
32608968 GTATTTAAAG
Statistics
Matches: 86, Mismatches: 15, Indels: 26
0.68 0.12 0.20
Matches are distributed among these distances:
11 7 0.08
12 14 0.16
13 20 0.23
14 8 0.09
15 4 0.05
16 9 0.10
17 10 0.12
18 3 0.03
19 11 0.13
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.33
Consensus pattern (13 bp):
AAAATATATAAAT
Found at i:32608882 original size:30 final size:30
Alignment explanation
Indices: 32608847--32608904 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
32608837 TTATAAAAAT
32608847 ATATAA-AGAAATATATAAATAAAATATACA
1 ATATAATA-AAATATATAAATAAAATATACA
* * *
32608877 ATATAATATAATTTATAGATAAAATATA
1 ATATAATAAAATATATAAATAAAATATA
32608905 TGATAATAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 23 0.96
31 1 0.04
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.33
Consensus pattern (30 bp):
ATATAATAAAATATATAAATAAAATATACA
Found at i:32609221 original size:22 final size:21
Alignment explanation
Indices: 32609195--32609236 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
32609185 ATTAGGGCTA
32609195 AATTAGAAATAAATAAAAATGG
1 AATTAGAAAT-AATAAAAATGG
* *
32609217 AATTATAAATATTAAAAATG
1 AATTAGAAATAATAAAAATG
32609237 CAAGAGGACC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.62, C:0.00, G:0.10, T:0.29
Consensus pattern (21 bp):
AATTAGAAATAATAAAAATGG
Found at i:32612500 original size:56 final size:56
Alignment explanation
Indices: 32612358--32612548 Score: 240
Period size: 56 Copynumber: 3.4 Consensus size: 56
32612348 ACCATGGCAT
* * ** * * * *
32612358 CGATATATGTGTGTGAGTTAGACTGCGTTTTATATGTTGGCATTGTTATGTGACTT
1 CGATATATGTGTGCGAGTAAGACCACGTTTTATACGTTGGCATCGATATGTGACTC
*
32612414 C-ATATATGTGTGCGAGTAAGACCACGTTTTATACGTTGGCATCAATATGTGACTC
1 CGATATATGTGTGCGAGTAAGACCACGTTTTATACGTTGGCATCGATATGTGACTC
* * *
32612469 CGATATATGTCTGCGAGTAAGACCACATTTTATACGTTGACATCGATATGTGACTC
1 CGATATATGTGTGCGAGTAAGACCACGTTTTATACGTTGGCATCGATATGTGACTC
* * *
32612525 TGATATATTTGTGCGAGTTAGACC
1 CGATATATGTGTGCGAGTAAGACC
32612549 CTGTCTGGGA
Statistics
Matches: 117, Mismatches: 17, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
55 46 0.39
56 71 0.61
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.37
Consensus pattern (56 bp):
CGATATATGTGTGCGAGTAAGACCACGTTTTATACGTTGGCATCGATATGTGACTC
Found at i:32614009 original size:23 final size:23
Alignment explanation
Indices: 32613979--32614051 Score: 101
Period size: 23 Copynumber: 3.1 Consensus size: 23
32613969 CCTAGCCTCT
*
32613979 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
**
32614002 TTTAATAACCAGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
32614025 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
32614049 TTT
1 TTT
32614052 TGCACTTCCT
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
23 23 0.53
24 20 0.47
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:32614053 original size:24 final size:24
Alignment explanation
Indices: 32613958--32614052 Score: 113
Period size: 24 Copynumber: 4.0 Consensus size: 24
32613948 GCTTTATCAT
*
32613958 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
32613983 ATAACTGGGGCAAAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
** *
32614006 ATAACCAGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
32614030 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
32614053 GCACTTCCTC
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
23 20 0.33
24 28 0.47
25 12 0.20
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.27
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:32614127 original size:20 final size:20
Alignment explanation
Indices: 32614102--32614168 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
32614092 TTATGAATAC
*
32614102 ATCATGTCCATATCATACAT
1 ATCATGTGCATATCATACAT
32614122 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
32614142 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
32614162 ACCATGT
1 ATCATGT
32614169 TTATCAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.33, C:0.22, G:0.10, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:32622259 original size:23 final size:23
Alignment explanation
Indices: 32622229--32622301 Score: 94
Period size: 23 Copynumber: 3.1 Consensus size: 23
32622219 CCTAGCCTCT
32622229 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCAAAAGCCC
32622252 TTTAATAACTGGGGCATAAA-CCC
1 TTTAATAACTGGGGCA-AAAGCCC
* * *
32622275 TTTTGATAACTAGGGCATAAGCCC
1 -TTTAATAACTGGGGCAAAAGCCC
32622299 TTT
1 TTT
32622302 TACACTTCAT
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
23 24 0.55
24 20 0.45
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCAAAAGCCC
Found at i:32622290 original size:24 final size:24
Alignment explanation
Indices: 32622227--32622303 Score: 104
Period size: 24 Copynumber: 3.2 Consensus size: 24
32622217 GGCCTAGCCT
32622227 CTTTTAATAACTGGGGCA-AAAGCC
1 CTTTTAATAACTGGGGCATAAA-CC
32622251 C-TTTAATAACTGGGGCATAAACC
1 CTTTTAATAACTGGGGCATAAACC
* * *
32622274 CTTTTGATAACTAGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAACC
32622298 CTTTTA
1 CTTTTA
32622304 CACTTCATCC
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
23 19 0.40
24 28 0.60
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30
Consensus pattern (24 bp):
CTTTTAATAACTGGGGCATAAACC
Found at i:32622397 original size:20 final size:20
Alignment explanation
Indices: 32622354--32622398 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
32622344 ATGAATACAT
* **
32622354 CATGTGCATATCATACATGT
1 CATGTGCATATCATAAATAC
32622374 CATGTGCATATCATAAATAC
1 CATGTGCATATCATAAATAC
32622394 CATGT
1 CATGT
32622399 TTATCAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.33
Consensus pattern (20 bp):
CATGTGCATATCATAAATAC
Found at i:32622413 original size:17 final size:18
Alignment explanation
Indices: 32622382--32622415 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
32622372 GTCATGTGCA
32622382 TATCATAAATACCATGTT
1 TATCATAAATACCATGTT
*
32622400 TATCA-AAATCCCATGT
1 TATCATAAATACCATGT
32622416 ATTAAAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.38, C:0.21, G:0.06, T:0.35
Consensus pattern (18 bp):
TATCATAAATACCATGTT
Found at i:32629099 original size:49 final size:49
Alignment explanation
Indices: 32629027--32629211 Score: 235
Period size: 49 Copynumber: 3.7 Consensus size: 49
32629017 CCGAAGCTAC
* *
32629027 CTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAAT
1 CTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTAT
* * * * *
32629076 CTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTT
1 CTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAATTAT
* ** *
32629127 CAGGTACGTATAGTAGCCTGCACTTAGTACTGCACATGCGACCAATTAT
1 CTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTAT
* *
32629176 CCGGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 CTGGTACACATAGTAGCCTGCACTTAGTACTACACA
32629212 CGTGACCTCA
Statistics
Matches: 113, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
49 73 0.65
50 2 0.02
51 38 0.34
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (49 bp):
CTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTAT
Found at i:32629143 original size:100 final size:100
Alignment explanation
Indices: 32629029--32629216 Score: 340
Period size: 100 Copynumber: 1.9 Consensus size: 100
32629019 GAAGCTACCT
*
32629029 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
32629094 TGCACTTAGTACTACACACGTGATCACAGTTTTCA
66 TGCACTTAGTACTACACACGTGATCACAGTTTTCA
* * *
32629129 GGTACGTATAGTAGCCTGCACTTAGTACTGCACATGCGACCAATTATCCGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
32629194 TGCACTTAGTACTACACACGTGA
66 TGCACTTAGTACTACACACGTGA
32629217 CCTCACAATA
Statistics
Matches: 84, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
100 84 1.00
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
TGCACTTAGTACTACACACGTGATCACAGTTTTCA
Found at i:32633199 original size:31 final size:31
Alignment explanation
Indices: 32633164--32633242 Score: 149
Period size: 31 Copynumber: 2.5 Consensus size: 31
32633154 TTTAACGGTT
32633164 ACTGGGCCGAAGCCTTTTCATAAATCATATA
1 ACTGGGCCGAAGCCTTTTCATAAATCATATA
*
32633195 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATA
32633226 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
32633243 ACTGTAAACG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 47 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATA
Found at i:32633537 original size:25 final size:26
Alignment explanation
Indices: 32633509--32633605 Score: 153
Period size: 25 Copynumber: 3.8 Consensus size: 26
32633499 CTCTTTTAAT
32633509 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
**
32633534 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
32633559 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
*
32633585 AACTGGGGCATAAGCTCTTTT
1 AACTGGGGCATAAGCCCTTTT
32633606 GCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
25 33 0.50
26 33 0.50
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:32633579 original size:51 final size:49
Alignment explanation
Indices: 32633496--32633605 Score: 168
Period size: 51 Copynumber: 2.2 Consensus size: 49
32633486 CTGGAGGCCT
32633496 AGCCTCTTTTAATAACTGGGGCAAAGCCCTTTTCGGTAAACTGGGGCA-A
1 AGCC-CTTTTAATAACTGGGGCAAAGCCCTTTTCGGTAAACTGGGGCATA
32633545 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTT-AAT-AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCATA
*
32633597 AGCTCTTTT
1 AGCCCTTTT
32633606 GCACTTCCTC
Statistics
Matches: 56, Mismatches: 1, Indels: 5
0.90 0.02 0.08
Matches are distributed among these distances:
48 5 0.09
49 7 0.12
50 10 0.18
51 25 0.45
52 9 0.16
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (49 bp):
AGCCCTTTTAATAACTGGGGCAAAGCCCTTTTCGGTAAACTGGGGCATA
Found at i:32633580 original size:26 final size:25
Alignment explanation
Indices: 32633496--32633605 Score: 134
Period size: 25 Copynumber: 4.4 Consensus size: 25
32633486 CTGGAGGCCT
32633496 AGCCTCTTTT-AAT-AACTGGGGCAA
1 AGCC-CTTTTCAATAAACTGGGGCAA
**
32633520 AGCCCTTTTCGGTAAACTGGGGCAA
1 AGCCCTTTTCAATAAACTGGGGCAA
32633545 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCA-A
**
32633571 AGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCA-A
*
32633597 AGCTCTTTT
1 AGCCCTTTT
32633606 GCACTTCCTC
Statistics
Matches: 76, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
23 5 0.07
24 5 0.07
25 33 0.43
26 33 0.43
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (25 bp):
AGCCCTTTTCAATAAACTGGGGCAA
Found at i:32633680 original size:20 final size:20
Alignment explanation
Indices: 32633655--32633721 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
32633645 TTATGAATAC
32633655 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
*
32633675 ATCATGTGCATTTTATACAT
1 ATCATGTGCATTTCATACAT
*
32633695 ATCATGTGCATATCATATCA-
1 ATCATGTGCATTTCATA-CAT
32633715 ATCATGT
1 ATCATGT
32633722 ATATCATATC
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.31, C:0.18, G:0.10, T:0.40
Consensus pattern (20 bp):
ATCATGTGCATTTCATACAT
Found at i:32633785 original size:25 final size:25
Alignment explanation
Indices: 32633757--32633804 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
32633747 ATAATTAAAC
* * *
32633757 CCTAGGGGTATAATGGTCATTTTAA
1 CCTAGGGGCAAAATAGTCATTTTAA
32633782 CCTAGGGGCAAAATAGTCATTTT
1 CCTAGGGGCAAAATAGTCATTTT
32633805 CATACTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAATAGTCATTTTAA
Found at i:32634490 original size:27 final size:27
Alignment explanation
Indices: 32634429--32634492 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
32634419 GGCGTATTCA
32634429 TCATTTTACCATACAAGGGTATTACGG
1 TCATTTTACCATACAAGGGTATTACGG
* * *
32634456 TCACTTTACCCTACAGGGGCT-TTACGG
1 TCATTTTACCATACAAGGG-TATTACGG
*
32634483 TCTTTTTACC
1 TCATTTTACC
32634493 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (27 bp):
TCATTTTACCATACAAGGGTATTACGG
Found at i:32634584 original size:27 final size:27
Alignment explanation
Indices: 32634554--32634668 Score: 108
Period size: 27 Copynumber: 4.3 Consensus size: 27
32634544 ACAAATCAAG
**
32634554 GGTAATTTTGTAAATCAGGGGTATTTT
1 GGTAATTTTACAAATCAGGGGTATTTT
* *
32634581 GGTAATTTTACAAAT-TGAGGGTATTTC
1 GGTAATTTTACAAATCAG-GGGTATTTT
* * * *
32634608 GATAATTTCACAAACCAGTGGTATTTT
1 GGTAATTTTACAAATCAGGGGTATTTT
* *
32634635 AGTAATTTTACAAA-CTAGGGGTGTTTT
1 GGTAATTTTACAAATC-AGGGGTATTTT
32634662 GGTAATT
1 GGTAATT
32634669 CTACCCTATA
Statistics
Matches: 69, Mismatches: 16, Indels: 6
0.76 0.18 0.07
Matches are distributed among these distances:
26 2 0.03
27 66 0.96
28 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.41
Consensus pattern (27 bp):
GGTAATTTTACAAATCAGGGGTATTTT
Found at i:32634585 original size:19 final size:19
Alignment explanation
Indices: 32634546--32634581 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
32634536 GTAAATCTAC
32634546 AAATCAAGGGTAATTTTGT
1 AAATCAAGGGTAATTTTGT
*
32634565 AAATCAGGGGT-ATTTTG
1 AAATCAAGGGTAATTTTG
32634582 GTAATTTTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.36
Consensus pattern (19 bp):
AAATCAAGGGTAATTTTGT
Found at i:32634708 original size:27 final size:26
Alignment explanation
Indices: 32634566--32634708 Score: 76
Period size: 27 Copynumber: 5.3 Consensus size: 26
32634556 TAATTTTGTA
* *
32634566 AATCAGGGGTATTTTGGTAATTTTAC
1 AATCAGGGGTATTTTAGTAATTTCAC
* *
32634592 AAAT-TGAGGGTA-TTTCGATAATTTCAC
1 -AATCAG-GGGTATTTTAG-TAATTTCAC
* * *
32634619 AAACCAGTGGTATTTTAGTAATTTTAC
1 -AATCAGGGGTATTTTAGTAATTTCAC
* * * *
32634646 AAACTAGGGGTGTTTTGGTAATTCTACCC
1 AATC-AGGGGTATTTTAGTAATT-T-CAC
* *
32634675 TAT-AGGGGTATTTCAGTAATTTCAC
1 AATCAGGGGTATTTTAGTAATTTCAC
32634700 AATCGAGGG
1 AATC-AGGG
32634709 TAAAACGATA
Statistics
Matches: 86, Mismatches: 21, Indels: 18
0.69 0.17 0.14
Matches are distributed among these distances:
25 4 0.05
26 9 0.10
27 65 0.76
28 6 0.07
29 2 0.02
ACGTcount: A:0.29, C:0.12, G:0.22, T:0.37
Consensus pattern (26 bp):
AATCAGGGGTATTTTAGTAATTTCAC
Found at i:32634730 original size:27 final size:27
Alignment explanation
Indices: 32634700--32634791 Score: 141
Period size: 27 Copynumber: 3.4 Consensus size: 27
32634690 GTAATTTCAC
*
32634700 AATCGAGGGTAAAAC-GATAATTTTGTA
1 AATCGAGGGTAAAACAG-TAATTCTGTA
*
32634727 AATCAAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
*
32634754 AATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTGTA
32634781 AATCGAGGGTA
1 AATCGAGGGTA
32634792 CTTTGGTAAT
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
27 59 0.98
28 1 0.02
ACGTcount: A:0.42, C:0.10, G:0.22, T:0.26
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTCTGTA
Found at i:32634800 original size:27 final size:27
Alignment explanation
Indices: 32634743--32634991 Score: 146
Period size: 27 Copynumber: 9.1 Consensus size: 27
32634733 GGGTAAAACA
* * ****
32634743 GTAATTCTGTAAATCGAGGGTAAAACA
1 GTAATTTTATAAATCGAGGGTAATTTG
* *
32634770 GTAATTCTATAAATCGAGGGTACTTTG
1 GTAATTTTATAAATCGAGGGTAATTTG
* *
32634797 GTAATTTTTATAAGTCGAGGGT-ATTTCA
1 GTAA-TTTTATAAATCGAGGGTAATTT-G
* * * * *
32634825 ATAATTTTATAAATTAGGGGGTATTTTA
1 GTAATTTTATAAA-TCGAGGGTAATTTG
* * * * *
32634853 GTAATTTTACAAA-CCAGAGATATTTTA
1 GTAATTTTATAAATCGAG-GGTAATTTG
* ***
32634880 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAATTTG
**
32634907 GTAATTTTATAAATCGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAATTTG
* *
32634934 GTAATTATATAAATCGAGGGTAGA-ATG
1 GTAATTTTATAAATCGAGGGTA-ATTTG
* *
32634961 GTAATTCTGTAAATC-AGGGGTAATTTG
1 GTAATTTTATAAATCGA-GGGTAATTTG
32634988 GTAA
1 GTAA
32634992 ACTAAAGTAT
Statistics
Matches: 177, Mismatches: 36, Indels: 18
0.77 0.16 0.08
Matches are distributed among these distances:
26 3 0.02
27 131 0.74
28 40 0.23
29 3 0.02
ACGTcount: A:0.36, C:0.07, G:0.22, T:0.35
Consensus pattern (27 bp):
GTAATTTTATAAATCGAGGGTAATTTG
Found at i:32634801 original size:54 final size:53
Alignment explanation
Indices: 32634700--32634979 Score: 161
Period size: 54 Copynumber: 5.2 Consensus size: 53
32634690 GTAATTTCAC
* * **
32634700 AATCGAGGGTAAAAC-GATAATTTTGTAAATCAAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACAG-TAATTTTATAAATCGAGGGTAAAATGGTAATT-TGTA
* *** *
32634754 AATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTACTTTGGTAATTTTTA
1 AATCGAGGGTAAAACAGTAATTTTATAAATCGAGGGTAAAATGGTAATTTGTA
*** * * * *** *
32634807 TAAGTCGAGGGTATTTCAATAATTTTATAAATTAGGGGGTATTTTAGTAATTT-TA
1 -AA-TCGAGGGTAAAACAGTAATTTTATAAA-TCGAGGGTAAAATGGTAATTTGTA
* * * **** * * *
32634862 CAAACCAGAGATATTTTAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTTTATA
1 -AATCGAG-GGTAAAACAGTAATTTTATAAATCGAGGGTAAAATGGTAA-TTTGTA
** * *
32634918 AATCGAGGGTAAAATGGTAATTATATAAATCGAGGGTAGAATGGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTTTATAAATCGAGGGTAAAATGGTAATT-TGTA
32634972 AATC-AGGG
1 AATCGAGGG
32634980 GTAATTTGGT
Statistics
Matches: 174, Mismatches: 44, Indels: 17
0.74 0.19 0.07
Matches are distributed among these distances:
53 9 0.05
54 93 0.53
55 53 0.30
56 19 0.11
ACGTcount: A:0.38, C:0.07, G:0.21, T:0.33
Consensus pattern (53 bp):
AATCGAGGGTAAAACAGTAATTTTATAAATCGAGGGTAAAATGGTAATTTGTA
Found at i:32637536 original size:40 final size:40
Alignment explanation
Indices: 32637455--32637675 Score: 297
Period size: 40 Copynumber: 5.6 Consensus size: 40
32637445 AAACCAAGTA
** * * *
32637455 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAATTG
*
32637494 CCTTCGGGACTTAGCCCGGTTATAGTAACTGGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
32637534 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
* * * *
32637574 CCTTCGGGACTTGGCCCGATTATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
*
32637614 CCTTCGGGACTTGGCCCGGTTATAGTAACTCGCACGAA-TG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC-AATTG
32637654 CCTTCGGG-CTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
32637676 CAATCCGAAT
Statistics
Matches: 165, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
39 26 0.16
40 137 0.83
41 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
Found at i:32645565 original size:40 final size:40
Alignment explanation
Indices: 32645494--32645704 Score: 311
Period size: 40 Copynumber: 5.3 Consensus size: 40
32645484 CCTTCGAGGT
* *
32645494 TTAG-CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGTTATAG-TAACTCGCACAAATGCCTTCGGGAC
*
32645533 TTAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGAC
1 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
* *
32645573 TTAGCCCGATTATAGTAACTCGCACAATTGCCTTCGGGAC
1 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
* *
32645613 TTGGCACGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
* *
32645653 TTGGCCCGGTTATAGTAACTCGCACGAATGCCTTCGGG-C
1 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
32645692 TTAGCCCGGTTAT
1 TTAGCCCGGTTAT
32645705 CAATCCGAAT
Statistics
Matches: 159, Mismatches: 11, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
39 18 0.11
40 141 0.89
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:32648789 original size:27 final size:27
Alignment explanation
Indices: 32648759--32648823 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
32648749 ATAATTATCG
32648759 AAATACCCTT-ATAGGGTAAAATCACCA
1 AAATACCCTTGA-AGGGTAAAATCACCA
* * *
32648786 AAATACCCTTGAAGTGTAAAATTACCG
1 AAATACCCTTGAAGGGTAAAATCACCA
32648813 AAATACCCTTG
1 AAATACCCTTG
32648824 TGTAAAATTA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
27 33 0.97
28 1 0.03
ACGTcount: A:0.42, C:0.22, G:0.12, T:0.25
Consensus pattern (27 bp):
AAATACCCTTGAAGGGTAAAATCACCA
Found at i:32648855 original size:78 final size:78
Alignment explanation
Indices: 32648694--32648858 Score: 181
Period size: 78 Copynumber: 2.1 Consensus size: 78
32648684 ACCTCGATTT
* * * * * *
32648694 GTAAAATTACCAAAATATCCTAGTATGTAAAATTATCAGAATACCCTCAATTTGTATAATTATCG
1 GTAAAATCACCAAAATACCCTAGAATGTAAAATTACCAGAATACCCT--ATGTGTAAAATTATCG
* *
32648759 AAATACCCTTATAGG
64 AAATACCCCTATAAG
* *
32648774 GTAAAATCACCAAAATACCCTTGAAGTGTAAAATTACC-GAAATACCCT-TGTGTAAAATTATTG
1 GTAAAATCACCAAAATACCCTAGAA-TGTAAAATTACCAG-AATACCCTATGTGTAAAATTATCG
*
32648837 AAATACCCCTGTAAG
64 AAATACCCCTATAAG
32648852 GTAAAAT
1 GTAAAAT
32648859 GATTGTTTTG
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 31 0.43
80 22 0.31
81 19 0.26
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.30
Consensus pattern (78 bp):
GTAAAATCACCAAAATACCCTAGAATGTAAAATTACCAGAATACCCTATGTGTAAAATTATCGAA
ATACCCCTATAAG
Found at i:32649378 original size:32 final size:32
Alignment explanation
Indices: 32649335--32649406 Score: 101
Period size: 32 Copynumber: 2.2 Consensus size: 32
32649325 ATATTTACCC
*
32649335 ATGGCTGTGTGCCGATCATATTA-CAGCTACTG
1 ATGGCTGTGTGCCGATCAAATTACCA-CTACTG
*
32649367 ATGGCTTTGTGCCGATCAAATTACCACTACTG
1 ATGGCTGTGTGCCGATCAAATTACCACTACTG
*
32649399 ATAGCTGT
1 ATGGCTGT
32649407 AAGCCATGTA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
32 33 0.94
33 2 0.06
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (32 bp):
ATGGCTGTGTGCCGATCAAATTACCACTACTG
Found at i:32652989 original size:28 final size:28
Alignment explanation
Indices: 32652958--32653029 Score: 117
Period size: 28 Copynumber: 2.6 Consensus size: 28
32652948 AGTATCACGG
* *
32652958 ATGGTACTTAGTGTGCGATACATCCAGA
1 ATGGCACTTAGTGTGCGAAACATCCAGA
32652986 ATGGCACTTAGTGTGCGAAACATCCAGA
1 ATGGCACTTAGTGTGCGAAACATCCAGA
*
32653014 ACGGCACTTAGTGTGC
1 ATGGCACTTAGTGTGC
32653030 AAGGTATCGG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAACATCCAGA
Found at i:32653178 original size:32 final size:32
Alignment explanation
Indices: 32653137--32653205 Score: 129
Period size: 32 Copynumber: 2.2 Consensus size: 32
32653127 GTATCTACGG
*
32653137 AAATTGGTACAATATGGTACATGTATGTACAA
1 AAATTGGTACAATATAGTACATGTATGTACAA
32653169 AAATTGGTACAATATAGTACATGTATGTACAA
1 AAATTGGTACAATATAGTACATGTATGTACAA
32653201 AAATT
1 AAATT
32653206 CAATTGAGTA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.43, C:0.09, G:0.16, T:0.32
Consensus pattern (32 bp):
AAATTGGTACAATATAGTACATGTATGTACAA
Found at i:32656608 original size:43 final size:42
Alignment explanation
Indices: 32656493--32656615 Score: 140
Period size: 43 Copynumber: 2.9 Consensus size: 42
32656483 ACCACATGTC
* * * **
32656493 GATGCCACTGTCCTAGACAGGGTCTTACAAAAAATCAAATAA
1 GATGCCAATGTCCCAGACATGGTCTTACATGAAATCAAATAA
* *
32656535 TGATGCCAATGTCCCAGGCATGGTCTTACATGCAATCATAATACA
1 -GATGCCAATGTCCCAGACATGGTCTTACATGAAATCA-AATA-A
*
32656580 -ATGCCAATGTCCCAGACATGGTCTTACATGTAATCA
1 GATGCCAATGTCCCAGACATGGTCTTACATGAAATCA
32656616 CATCTCAGTA
Statistics
Matches: 69, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
43 64 0.93
44 4 0.06
45 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (42 bp):
GATGCCAATGTCCCAGACATGGTCTTACATGAAATCAAATAA
Found at i:32659998 original size:48 final size:48
Alignment explanation
Indices: 32659926--32660055 Score: 156
Period size: 48 Copynumber: 2.7 Consensus size: 48
32659916 TAGGGGATTC
* * *
32659926 ATTGATTTAGCTTCGGGCCATGATATCGA-TACTTCAAGTGCAAGTTACT
1 ATTGATTTGGCTTCGGGCCATGATAT-GAGCACTTCAAGTGCAAGATA-T
* **
32659975 -TTGATTTGGCTTCGGGCCATGATATTAGCACTTCGGGTGCAAGATAT
1 ATTGATTTGGCTTCGGGCCATGATATGAGCACTTCAAGTGCAAGATAT
* *
32660022 ATTGAGTTGGCTTCAGGCCATGATATGAGCACTT
1 ATTGATTTGGCTTCGGGCCATGATATGAGCACTT
32660056 AGTGTGTGAG
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
47 2 0.03
48 68 0.97
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.34
Consensus pattern (48 bp):
ATTGATTTGGCTTCGGGCCATGATATGAGCACTTCAAGTGCAAGATAT
Found at i:32673106 original size:231 final size:230
Alignment explanation
Indices: 32672704--32673155 Score: 715
Period size: 231 Copynumber: 2.0 Consensus size: 230
32672694 ATTAAAAATT
* * * *
32672704 CAAGCATGGGCTTTGTAAAATACAAAGCAACAATTAAAAAACGTAGAAATTATCAAAAACTGATC
1 CAAGCATGGACTTTGTAAAACACAAAGCAACAATTAAAAAACGTAGAAATTATCAAAAACAGATA
*
32672769 AAAAACCATACCTTAATCACCAAAAATAGTAGTCGAACCCTATTTTGAATTTTCTTTTATTATCC
66 AAAAACCATACCTTAATCACCAAAAATAGTAGTCGAACCCTAGTTTGAATTTTCTTTTATTATCC
* * * *
32672834 TTTTGTATTTTTGGTAGTTGCATGAACATATGGTAAATTTTCATGCTTTTTATTTTATTAATATG
131 TTTTATATTTTCGGCAATTGCATGAACATATGGTAAATTTTCATGCTTTTTATTTTATTAATATG
32672899 ACTTTAATAACCATTTTTCCTAATTTTCCCATTTG
196 ACTTTAATAACCATTTTTCCTAATTTTCCCATTTG
** * *
32672934 CAAGCATGGACTTTGTAAAACACAAAGCAATGATTACAAAAATGTAGAAATTATCGAAAACAGAT
1 CAAGCATGGACTTTGTAAAACACAAAGCAACAATTA-AAAAACGTAGAAATTATCAAAAACAGAT
* ** *
32672999 AAAAAACCATACTTTAATCACCAAAAATAGTAGTCGAATTCTAGTTTGAATTTTCTTTTATTGTC
65 AAAAAACCATACCTTAATCACCAAAAATAGTAGTCGAACCCTAGTTTGAATTTTCTTTTATTATC
*
32673064 CTTTTATATTTTCGGCAATTGCATGAGCATATGGTAAATTTTCATGCTTTTTATTTTATTAATAT
130 CTTTTATATTTTCGGCAATTGCATGAACATATGGTAAATTTTCATGCTTTTTATTTTATTAATAT
* *
32673129 GGCTTTAATAACCATTTTTCTTAATTT
195 GACTTTAATAACCATTTTTCCTAATTT
32673156 GCCCTTTTAT
Statistics
Matches: 201, Mismatches: 20, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
230 32 0.16
231 169 0.84
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.39
Consensus pattern (230 bp):
CAAGCATGGACTTTGTAAAACACAAAGCAACAATTAAAAAACGTAGAAATTATCAAAAACAGATA
AAAAACCATACCTTAATCACCAAAAATAGTAGTCGAACCCTAGTTTGAATTTTCTTTTATTATCC
TTTTATATTTTCGGCAATTGCATGAACATATGGTAAATTTTCATGCTTTTTATTTTATTAATATG
ACTTTAATAACCATTTTTCCTAATTTTCCCATTTG
Found at i:32682794 original size:24 final size:26
Alignment explanation
Indices: 32682767--32682825 Score: 86
Period size: 28 Copynumber: 2.3 Consensus size: 26
32682757 TTATGTTGGA
32682767 TTGCATG-A-TTATGTTACTCGCTAT
1 TTGCATGAACTTATGTTACTCGCTAT
32682791 TTGCATGTGAACTTATGTTACTCGCTAT
1 TTGCA--TGAACTTATGTTACTCGCTAT
32682819 TTGCATG
1 TTGCATG
32682826 TGAACTTACT
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
24 5 0.16
26 4 0.13
27 1 0.03
28 21 0.68
ACGTcount: A:0.20, C:0.17, G:0.19, T:0.44
Consensus pattern (26 bp):
TTGCATGAACTTATGTTACTCGCTAT
Found at i:32682815 original size:28 final size:28
Alignment explanation
Indices: 32682775--32682833 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
32682765 GATTGCATGA
32682775 TTATGTTACTCGCTATTTGCATGTGAAC
1 TTATGTTACTCGCTATTTGCATGTGAAC
32682803 TTATGTTACTCGCTATTTGCATGTGAAC
1 TTATGTTACTCGCTATTTGCATGTGAAC
32682831 TTA
1 TTA
32682834 CTAAGCATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.22, C:0.17, G:0.17, T:0.44
Consensus pattern (28 bp):
TTATGTTACTCGCTATTTGCATGTGAAC
Found at i:32696367 original size:19 final size:18
Alignment explanation
Indices: 32696341--32696376 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
32696331 TGTAAATTAG
*
32696341 TAAAATAAGTTAAAATAA
1 TAAAATAAGTAAAAATAA
32696359 TAAACATAAGTAAAAATA
1 TAAA-ATAAGTAAAAATA
32696377 TGTGCATGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.67, C:0.03, G:0.06, T:0.25
Consensus pattern (18 bp):
TAAAATAAGTAAAAATAA
Found at i:32704879 original size:39 final size:40
Alignment explanation
Indices: 32704817--32705034 Score: 304
Period size: 39 Copynumber: 5.6 Consensus size: 40
32704807 AAACCAAGTA
** * *
32704817 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
32704856 CCTTC-GGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
32704895 CCTTCGGGACTTAGCCCGGTTATAGTAACTCG-ACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
32704934 CCTTCGGGACTTGGCCCGGTTATAGTAACTCGCAC-AATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
32704973 CCTTCGGGACTTGGCCCGGTTATAGTAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
32705013 CCTTCGGG-CTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
32705035 CAATCCGAAT
Statistics
Matches: 166, Mismatches: 8, Indels: 10
0.90 0.04 0.05
Matches are distributed among these distances:
38 7 0.04
39 119 0.72
40 40 0.24
ACGTcount: A:0.20, C:0.28, G:0.25, T:0.28
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:32712920 original size:40 final size:40
Alignment explanation
Indices: 32712876--32713059 Score: 309
Period size: 40 Copynumber: 4.6 Consensus size: 40
32712866 CTCACTCAAA
32712876 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAT
1 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAT
*
32712916 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGTACAAT
1 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAT
* *
32712956 TGCCTTCGGGACTTGGCCCGGTTATAGTAACTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAT
*
32712996 TGCCTTCGGGACTTGGCCCGGTTATAGTAACTCGCACGAA-
1 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC-AAT
32713036 TGCCTTCGGG-CTTAGCCCGGTTAT
1 TGCCTTCGGGACTTAGCCCGGTTAT
32713060 CAATCCGAAT
Statistics
Matches: 138, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
39 13 0.09
40 123 0.89
41 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.25, T:0.28
Consensus pattern (40 bp):
TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAT
Found at i:32716034 original size:34 final size:33
Alignment explanation
Indices: 32715995--32716070 Score: 100
Period size: 34 Copynumber: 2.3 Consensus size: 33
32715985 CATATCCACA
32715995 ATAGTATCAGTGGGGGCATTAGCCC-ATTACAGT
1 ATAGTATCAGTGGGGGCATTAGCCCAATT-CAGT
* * *
32716028 AGTAGTAACAGTGTGGGCCTTAGCCCAATTCAGT
1 A-TAGTATCAGTGGGGGCATTAGCCCAATTCAGT
32716062 ATAGTATCA
1 ATAGTATCA
32716071 ATAATGCATA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
33 8 0.22
34 26 0.70
35 3 0.08
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (33 bp):
ATAGTATCAGTGGGGGCATTAGCCCAATTCAGT
Found at i:32732631 original size:41 final size:40
Alignment explanation
Indices: 32732504--32732648 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
32732494 CTCGCACAAG
* * * * * *
32732504 GCCTTCGGGTCTTAACCCAGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
32732544 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
32732584 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
32732625 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
32732649 CATTCGAGTA
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 3 0.03
40 58 0.64
41 27 0.30
42 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:32739822 original size:41 final size:41
Alignment explanation
Indices: 32739695--32739880 Score: 243
Period size: 41 Copynumber: 4.6 Consensus size: 41
32739685 CTCGCACAAG
* * * * * * *
32739695 GCCTTCGGGTCTTAACCCAGATATGGTCAC-TAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
*
32739735 GCCTTCGGGACTTAGCCCGGATATAGTCGC-TAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
* *
32739775 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGCTTAGCACAAAA
*
32739816 GCCTTCGGGACTTATCCCGGATATAGTCGCTTAGCACAAAA
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
32739857 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
32739881 CATTCGAGTA
Statistics
Matches: 130, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 3 0.02
40 58 0.45
41 66 0.51
42 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (41 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
Found at i:32739825 original size:81 final size:82
Alignment explanation
Indices: 32739725--32739878 Score: 240
Period size: 81 Copynumber: 1.9 Consensus size: 82
32739715 ATATGGTCAC
* * *
32739725 TAGCATAAATGCCTTCGGGACTTAGCCCGGATATAGTCGC-TAGCACAAATGCCTTC-GGATCTT
1 TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAAGCCTTCGGGA-CTT
*
32739788 AGTCCGGATGTAGTCGCT
65 AGCCCGGATGTAGTCGCT
*
32739806 TAGCACAAAAGCCTTCGGGACTTATCCCGGATATAGTCGCTTAGCACAAAAGCCTTCGGGACTTA
1 TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAAGCCTTCGGGACTTA
32739871 GCCCGGAT
66 GCCCGGAT
32739879 ATCATTCGAG
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 37 0.56
82 26 0.39
83 3 0.05
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (82 bp):
TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAAGCCTTCGGGACTTA
GCCCGGATGTAGTCGCT
Found at i:32742861 original size:17 final size:18
Alignment explanation
Indices: 32742839--32742872 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
32742829 TGAAGCATAC
32742839 AGAAAGA-CAGAATCGTG
1 AGAAAGATCAGAATCGTG
32742856 AGAAAGATCAGAATCGT
1 AGAAAGATCAGAATCGT
32742873 TTTAGGAGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.47, C:0.12, G:0.26, T:0.15
Consensus pattern (18 bp):
AGAAAGATCAGAATCGTG
Found at i:32751744 original size:27 final size:26
Alignment explanation
Indices: 32751698--32751751 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
32751688 TGGAGGAAGC
*
32751698 GTTCTGGTGGCCTCGCCACATATATCT
1 GTTCTGGTGACCTCGCCACA-ATATCT
* *
32751725 GTTCTGGTGACTTCGTCACAATATCT
1 GTTCTGGTGACCTCGCCACAATATCT
32751751 G
1 G
32751752 GCAGCCTCGC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 7 0.29
27 17 0.71
ACGTcount: A:0.17, C:0.26, G:0.22, T:0.35
Consensus pattern (26 bp):
GTTCTGGTGACCTCGCCACAATATCT
Found at i:32751840 original size:27 final size:26
Alignment explanation
Indices: 32751766--32751846 Score: 81
Period size: 27 Copynumber: 2.9 Consensus size: 26
32751756 CCTCGCTGCA
*
32751766 ATCTGGTTGCTTCGCCACATATATATAT
1 ATCTGG-TGCTTCGCCACA-ATATCTAT
* *
32751794 ATTCTGGTGGCCTAGCCACAATATCTAT
1 A-TCTGGT-GCTTCGCCACAATATCTAT
*
32751822 ATCTGGTGACTTCGTCACAATATCT
1 ATCTGGTG-CTTCGCCACAATATCT
32751847 GCCAGCCTCG
Statistics
Matches: 44, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
26 1 0.02
27 19 0.43
28 10 0.23
29 14 0.32
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (26 bp):
ATCTGGTGCTTCGCCACAATATCTAT
Found at i:32753220 original size:43 final size:43
Alignment explanation
Indices: 32753172--32753287 Score: 214
Period size: 43 Copynumber: 2.7 Consensus size: 43
32753162 CCGGCATTAC
*
32753172 GCCTGCTAGGCACGAAGGCTCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
32753215 GCCTGCTAGGCACGAAGGCCCGAATATACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
32753258 GCCTGCTAGGCACGAAGGCCCGAATACACA
1 GCCTGCTAGGCACGAAGGCCCGAATACACA
32753288 GGCCCGAATA
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 70 1.00
ACGTcount: A:0.30, C:0.33, G:0.26, T:0.11
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:32753373 original size:38 final size:38
Alignment explanation
Indices: 32753331--32753410 Score: 106
Period size: 38 Copynumber: 2.1 Consensus size: 38
32753321 TAGGCACTAG
* *
32753331 GCCTGCAAGATTTATCCCTGATATAATACCAGCACGAA
1 GCCTGCAAGATTTAACCCGGATATAATACCAGCACGAA
** **
32753369 GCCTGCTGGATTTAACCCGGATATTTTACCAGCACGAA
1 GCCTGCAAGATTTAACCCGGATATAATACCAGCACGAA
32753407 GCCT
1 GCCT
32753411 ACGAGTCTTT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.25
Consensus pattern (38 bp):
GCCTGCAAGATTTAACCCGGATATAATACCAGCACGAA
Found at i:32755346 original size:29 final size:29
Alignment explanation
Indices: 32755282--32755408 Score: 154
Period size: 29 Copynumber: 4.5 Consensus size: 29
32755272 ATAGTAAGTC
*
32755282 CGCACACTTAGTG-TTATATAATC-AACT
1 CGCACACTTAGTGCTTACATAATCAAACT
32755309 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
*
32755338 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
* * * * *
32755366 TGCACACTTAGTGCTATGCA-ATTTAAACC
1 CGCACACTTAGTGCT-TACATAATCAAACT
32755395 CGCACACTTAGTGC
1 CGCACACTTAGTGC
32755409 CAATCTCATG
Statistics
Matches: 87, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
27 13 0.15
28 35 0.40
29 37 0.43
30 2 0.02
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCAAACT
Found at i:32755358 original size:28 final size:28
Alignment explanation
Indices: 32755282--32755408 Score: 166
Period size: 28 Copynumber: 4.5 Consensus size: 28
32755272 ATAGTAAGTC
*
32755282 CGCACACTTAGTGTTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
32755309 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
32755338 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
32755366 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
32755395 CGCACACTTAGTGC
1 CGCACACTTAGTGC
32755409 CAATCTCATG
Statistics
Matches: 88, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
27 13 0.15
28 39 0.44
29 36 0.41
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:32755379 original size:57 final size:56
Alignment explanation
Indices: 32755281--32755408 Score: 177
Period size: 57 Copynumber: 2.3 Consensus size: 56
32755271 TATAGTAAGT
*
32755281 CCGCACACTTAGTGTTATATAATCAACTCGCACACTTAGTGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAACTCGCACACTTAGTGCTATACA-AATCAAAC
* * * * *
32755337 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATC-AACTCGCACACTTAGTGCTATACAAATCAAAC
32755394 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
32755409 CAATCTCATG
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
56 22 0.35
57 38 0.60
58 3 0.05
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.29
Consensus pattern (56 bp):
CCGCACACTTAGTGCTATATAATCAACTCGCACACTTAGTGCTATACAAATCAAAC
Found at i:32768530 original size:20 final size:20
Alignment explanation
Indices: 32768497--32768551 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 20
32768487 ATAAACATGT
*
32768497 ATGT-TGATATTGCACATGAC
1 ATGTATGATA-TGCACATGAA
32768517 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
32768537 ATGTATGATATGCAC
1 ATGTATGATATGCAC
32768552 GTGATGTAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
20 28 0.85
21 5 0.15
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.33
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:32768640 original size:24 final size:24
Alignment explanation
Indices: 32768608--32768727 Score: 176
Period size: 23 Copynumber: 5.1 Consensus size: 24
32768598 AGGAAGTGGA
32768608 AAAGGGCTTTATGCCCCAGTTATT
1 AAAGGGCTTTATGCCCCAGTTATT
* *
32768632 AAAGGGCTTGT-TACCTCAGTTATT
1 AAAGGGCTT-TATGCCCCAGTTATT
32768656 AAAGGGCTTTA-GCCCCAGTTATT
1 AAAGGGCTTTATGCCCCAGTTATT
32768679 AAAGGGC-TTATGCCCCAGTTATT
1 AAAGGGCTTTATGCCCCAGTTATT
*
32768702 AAAAGGCTTT-TGCCCCAGTTATT
1 AAAGGGCTTTATGCCCCAGTTATT
32768725 AAA
1 AAA
32768728 AGAGGCTAGG
Statistics
Matches: 87, Mismatches: 5, Indels: 9
0.86 0.05 0.09
Matches are distributed among these distances:
22 3 0.03
23 52 0.60
24 31 0.36
25 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.33
Consensus pattern (24 bp):
AAAGGGCTTTATGCCCCAGTTATT
Found at i:32768998 original size:28 final size:28
Alignment explanation
Indices: 32768944--32768999 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
32768934 TACAGTAAAG
*
32768944 GCTTCGGCCAGTAATATGAAATTTGAAA
1 GCTTCGGCCAGTAATATGAAATATGAAA
**
32768972 GCTTCGGCCCAGTGTTATG-AATATGAAA
1 GCTTCGG-CCAGTAATATGAAATATGAAA
32769000 TATGAAAGGG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 15 0.62
29 9 0.38
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (28 bp):
GCTTCGGCCAGTAATATGAAATATGAAA
Found at i:32783046 original size:86 final size:86
Alignment explanation
Indices: 32782922--32783082 Score: 213
Period size: 86 Copynumber: 1.9 Consensus size: 86
32782912 TAGGATTCCG
** * *
32782922 ATATGAGATTCGTGTAAGACCACATTTGAGACGTTGGCATCGATTTTTGATTTACGTGTAAGACC
1 ATATGAGATTCGTGTAAGACCACATTTGAGACGTTGGCATCGACATGTGA-TTACATGTAAGACC
32782987 ATGTCTGGGACATCGGTATTGT
65 ATGTCTGGGACATCGGTATTGT
*
32783009 ATATGAG-TTCGTGTAAGACC-C-TGTCTGGGACAG-TGGCATCGACATGTGATTACATGTAAGA
1 ATATGAGATTCGTGTAAGACCACAT-T-TGAGAC-GTTGGCATCGACATGTGATTACATGTAAGA
32783070 CCATGTCTGGGAC
63 CCATGTCTGGGAC
32783083 GTTGGTGATG
Statistics
Matches: 66, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
84 1 0.02
85 26 0.39
86 31 0.47
87 8 0.12
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (86 bp):
ATATGAGATTCGTGTAAGACCACATTTGAGACGTTGGCATCGACATGTGATTACATGTAAGACCA
TGTCTGGGACATCGGTATTGT
Found at i:32783077 original size:43 final size:43
Alignment explanation
Indices: 32782973--32783082 Score: 127
Period size: 42 Copynumber: 2.6 Consensus size: 43
32782963 GATTTTTGAT
* * *
32782973 TTACGTGTAAGACCATGTCTGGGACATCGGTATTGTATATGAG
1 TTACGTGTAAGACCATGTCTGGGACATCGGCATCGCATATGAG
* *
32783016 TT-CGTGTAAGACCCTGTCTGGGACAGT-GGCATCGACATGTGA-
1 TTACGTGTAAGACCATGTCTGGGACA-TCGGCATCG-CATATGAG
*
32783058 TTACATGTAAGACCATGTCTGGGAC
1 TTACGTGTAAGACCATGTCTGGGAC
32783083 GTTGGTGATG
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
42 29 0.51
43 28 0.49
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (43 bp):
TTACGTGTAAGACCATGTCTGGGACATCGGCATCGCATATGAG
Found at i:32791261 original size:47 final size:49
Alignment explanation
Indices: 32791185--32791317 Score: 181
Period size: 47 Copynumber: 2.8 Consensus size: 49
32791175 TGTAACCCGC
32791185 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
*
32791235 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
32791278 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
32791318 TCAACCATCC
Statistics
Matches: 73, Mismatches: 3, Indels: 15
0.80 0.03 0.16
Matches are distributed among these distances:
42 2 0.03
43 5 0.07
44 2 0.03
45 2 0.03
46 29 0.40
47 30 0.41
48 2 0.03
49 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:32791333 original size:46 final size:46
Alignment explanation
Indices: 32791188--32791333 Score: 149
Period size: 46 Copynumber: 3.2 Consensus size: 46
32791178 AACCCGCCCA
*
32791188 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTACAT-C
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACATCC
* * ***
32791236 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTC-ACATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACATCC
32791280 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAA-CATCC
32791328 T-AGTGA
1 TAAGTGA
32791334 CATGTCACTT
Statistics
Matches: 83, Mismatches: 9, Indels: 14
0.78 0.08 0.13
Matches are distributed among these distances:
43 4 0.05
44 1 0.01
45 2 0.02
46 36 0.43
47 32 0.39
48 8 0.10
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACATCC
Found at i:32808144 original size:39 final size:40
Alignment explanation
Indices: 32808042--32808245 Score: 236
Period size: 40 Copynumber: 5.1 Consensus size: 40
32808032 TCGAATGATG
* * *
32808042 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
* *
32808083 TCCAGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
* *
32808122 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
*
32808162 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * **
32808202 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATA
32808242 TCCG
1 TCCG
32808246 ATTAAATTCC
Statistics
Matches: 140, Mismatches: 17, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
39 37 0.26
40 78 0.56
41 24 0.17
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:32808258 original size:79 final size:80
Alignment explanation
Indices: 32808043--32808260 Score: 232
Period size: 79 Copynumber: 2.7 Consensus size: 80
32808033 CGAATGATGT
* * *
32808043 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGT-GACTATATCCAGACTAAGA-TCCGAAGGCAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCAGATTAA-ATTCCGAAGGCAT
*
32808106 TTGTGCGAGTTACTAATT
63 TTGTGCGAGTTACTAATA
* * * * * *
32808124 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCCAGATTAAATTCCGAAGGCATTT
32808187 GTGCGAGTTACT-ATAA
65 GTGCGAGTTACTAAT-A
* **
32808203 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCC-GATTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCAGATTAAATTCCGAAGG
32808261 TACGTGATTC
Statistics
Matches: 113, Mismatches: 18, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
78 2 0.02
79 61 0.54
80 40 0.35
81 10 0.09
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCAGATTAAATTCCGAAGGCATTTG
TGCGAGTTACTAATA
Found at i:32825454 original size:17 final size:17
Alignment explanation
Indices: 32825432--32825476 Score: 72
Period size: 17 Copynumber: 2.6 Consensus size: 17
32825422 ATTAATTGTT
*
32825432 TTGTGATGGATCAAGTG
1 TTGTGAAGGATCAAGTG
32825449 TTGTGAAGGATCAAGTG
1 TTGTGAAGGATCAAGTG
*
32825466 TTGGGAAGGAT
1 TTGTGAAGGAT
32825477 ACGTGGATGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.27, C:0.04, G:0.38, T:0.31
Consensus pattern (17 bp):
TTGTGAAGGATCAAGTG
Found at i:32826387 original size:22 final size:22
Alignment explanation
Indices: 32826343--32826387 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
32826333 TCCCCACATG
*
32826343 GAGTGTAGGGCTGGATGGAGTA
1 GAGTGTAGGGATGGATGGAGTA
*
32826365 GAGTGTAGAGGATGGTTGG-GTA
1 GAGTGTAG-GGATGGATGGAGTA
32826387 G
1 G
32826388 GATCTATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.22, C:0.02, G:0.51, T:0.24
Consensus pattern (22 bp):
GAGTGTAGGGATGGATGGAGTA
Found at i:32836947 original size:44 final size:43
Alignment explanation
Indices: 32836823--32836962 Score: 155
Period size: 44 Copynumber: 3.3 Consensus size: 43
32836813 CGTACCCAGA
* *
32836823 TGGTCTTACATGT-AATCAAATGTCGATGCC-ACTATCCCAAACAG
1 TGGTCTTACACGTAAATCAAA-GTCGATGCCAAC-ATCCCAGAC-G
* *
32836867 -GGTCTTACATG-AAATCAAA-TACGTTGCCAACATCCCAGACG
1 TGGTCTTACACGTAAATCAAAGT-CGATGCCAACATCCCAGACG
*
32836908 TGGTCTTACACGTAAATCATAAGTCGATGCCAACGTCCCAGACG
1 TGGTCTTACACGTAAATCA-AAGTCGATGCCAACATCCCAGACG
32836952 TGGTCTTACAC
1 TGGTCTTACAC
32836963 AATAACACAT
Statistics
Matches: 84, Mismatches: 5, Indels: 14
0.82 0.05 0.14
Matches are distributed among these distances:
41 2 0.02
42 24 0.29
43 26 0.31
44 31 0.37
45 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (43 bp):
TGGTCTTACACGTAAATCAAAGTCGATGCCAACATCCCAGACG
Found at i:32851167 original size:40 final size:40
Alignment explanation
Indices: 32851061--32851244 Score: 182
Period size: 40 Copynumber: 4.7 Consensus size: 40
32851051 TTGAATGCTG
* * * *
32851061 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
** * *
32851100 ATCCGGACTAAGAT-CCGAAGGC-CTTGTGCGAGATACTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
32851140 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
32851180 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
32851219 AACCGGGCTATGTCCCGAA-GCATTTG
1 -TCCGGGTTAAGTCCCGAAGGCATTTG
32851245 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
38 1 0.01
39 29 0.23
40 93 0.75
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:32851197 original size:79 final size:81
Alignment explanation
Indices: 32851061--32851244 Score: 209
Period size: 79 Copynumber: 2.3 Consensus size: 81
32851051 TTGAATGCTG
*
32851061 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGC-CT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCACT
32851124 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * * **
32851139 TTCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
* *
32851202 TTTGTGCGAGTTACTATA
64 CTTGTGCGAGATACTATA
* *
32851220 ACCGGGCTATGTCCCGAA-GCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32851245 AACGAGGAGC
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 51 0.57
80 36 0.40
81 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCACT
TGTGCGAGATACTATA
Found at i:32859433 original size:40 final size:40
Alignment explanation
Indices: 32859349--32859534 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
32859339 TTGAATGCTG
* * * * *
32859349 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * * *
32859389 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
32859429 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
32859469 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
32859510 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
32859535 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
39 1 0.01
40 115 0.91
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:32861114 original size:23 final size:23
Alignment explanation
Indices: 32861084--32861135 Score: 95
Period size: 23 Copynumber: 2.3 Consensus size: 23
32861074 GCTCATATTT
32861084 ACATAACCCAAAATCAAGTATAA
1 ACATAACCCAAAATCAAGTATAA
*
32861107 ACATAACCTAAAATCAAGTATAA
1 ACATAACCCAAAATCAAGTATAA
32861130 ACATAA
1 ACATAA
32861136 GCTAGCCTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.58, C:0.19, G:0.04, T:0.19
Consensus pattern (23 bp):
ACATAACCCAAAATCAAGTATAA
Found at i:32861990 original size:56 final size:56
Alignment explanation
Indices: 32861861--32861992 Score: 201
Period size: 56 Copynumber: 2.4 Consensus size: 56
32861851 CCAAATAGGT
* * *
32861861 TCTTACTTGCACACATAAATCGGAATCACATATCGATGCCAATGTATTAAACGTGA
1 TCTTACTCGCACACATATATCAGAATCACATATCGATGCCAATGTATTAAACGTGA
* * * *
32861917 TCTTACGCGCAAACATATATCAGAATCACATATTGATGCCAATGTATTAAACGTGG
1 TCTTACTCGCACACATATATCAGAATCACATATCGATGCCAATGTATTAAACGTGA
32861973 TCTTACTCGCACACATATAT
1 TCTTACTCGCACACATATAT
32861993 TGATGCCATA
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
56 67 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.30
Consensus pattern (56 bp):
TCTTACTCGCACACATATATCAGAATCACATATCGATGCCAATGTATTAAACGTGA
Found at i:32862620 original size:15 final size:15
Alignment explanation
Indices: 32862602--32862632 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
32862592 ATAAAAAATT
32862602 TTAATACAAAACATA
1 TTAATACAAAACATA
*
32862617 TTAATCCAAAACATA
1 TTAATACAAAACATA
32862632 T
1 T
32862633 CTTTCATAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.16, G:0.00, T:0.29
Consensus pattern (15 bp):
TTAATACAAAACATA
Done.