Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 103 of 352
Found at i:32866863 original size:54 final size:54
Alignment explanation
Indices: 32866781--32866960 Score: 229
Period size: 54 Copynumber: 3.3 Consensus size: 54
32866771 CAAACTGTTC
* * * *
32866781 AAAATTACCAAAATA-CCTCATGTTTGTAAAATTATCGAAATACCGTCGGATTAT
1 AAAATTATCAAAATACCCCCA-GTTTGTAAAATTATCGAAATACCCTCGGATTGT
* *
32866835 AAAATTATCGAAATACCCCCAGTTTGTAAAATTATCGAAATACCCTC-AATTTGT
1 AAAATTATCAAAATACCCCCAGTTTGTAAAATTATCGAAATACCCTCGGA-TTGT
* * * *
32866889 AAAATTATCAAAATACCTCCAGTTCGTAAAATTACCGAAATACCCTCGGTTTGT
1 AAAATTATCAAAATACCCCCAGTTTGTAAAATTATCGAAATACCCTCGGATTGT
*
32866943 AAAATTACCAAAATACCC
1 AAAATTATCAAAATACCC
32866961 TTAGAGTCTA
Statistics
Matches: 109, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
53 1 0.01
54 104 0.95
55 4 0.04
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (54 bp):
AAAATTATCAAAATACCCCCAGTTTGTAAAATTATCGAAATACCCTCGGATTGT
Found at i:32866888 original size:81 final size:82
Alignment explanation
Indices: 32866781--32866961 Score: 235
Period size: 81 Copynumber: 2.2 Consensus size: 82
32866771 CAAACTGTTC
* * * *
32866781 AAAATTACCAAAATA-CCTCATGTTTGTAAAATTATCGAAATACCGT-CGGATT-ATAAAATTAT
1 AAAATTACCAAAATACCCTCATATTTGTAAAATTATCAAAATACC-TCCAG-TTCATAAAATTAC
32866843 CGAAATACCCCCAGTTTGT
64 CGAAATACCCCCAGTTTGT
* * *
32866862 AAAATTATCGAAATACCCTCA-ATTTGTAAAATTATCAAAATACCTCCAGTTCGTAAAATTACCG
1 AAAATTACCAAAATACCCTCATATTTGTAAAATTATCAAAATACCTCCAGTTCATAAAATTACCG
* *
32866926 AAATACCCTCGGTTTGT
66 AAATACCCCCAGTTTGT
32866943 AAAATTACCAAAATACCCT
1 AAAATTACCAAAATACCCT
32866962 TAGAGTCTAA
Statistics
Matches: 86, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
80 3 0.03
81 78 0.91
82 5 0.06
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.30
Consensus pattern (82 bp):
AAAATTACCAAAATACCCTCATATTTGTAAAATTATCAAAATACCTCCAGTTCATAAAATTACCG
AAATACCCCCAGTTTGT
Found at i:32866960 original size:27 final size:27
Alignment explanation
Indices: 32866781--32866961 Score: 204
Period size: 27 Copynumber: 6.7 Consensus size: 27
32866771 CAAACTGTTC
* *
32866781 AAAATTACCAAAATA-CCTCATGTTTGT
1 AAAATTATCGAAATACCCTCA-GTTTGT
* * * *
32866808 AAAATTATCGAAATACCGTCGGATTAT
1 AAAATTATCGAAATACCCTCAGTTTGT
*
32866835 AAAATTATCGAAATACCCCCAGTTTGT
1 AAAATTATCGAAATACCCTCAGTTTGT
*
32866862 AAAATTATCGAAATACCCTCAATTTGT
1 AAAATTATCGAAATACCCTCAGTTTGT
* *
32866889 AAAATTATCAAAATA-CCTCCAGTTCGT
1 AAAATTATCGAAATACCCT-CAGTTTGT
* *
32866916 AAAATTACCGAAATACCCTCGGTTTGT
1 AAAATTATCGAAATACCCTCAGTTTGT
* *
32866943 AAAATTACCAAAATACCCT
1 AAAATTATCGAAATACCCT
32866962 TAGAGTCTAA
Statistics
Matches: 130, Mismatches: 21, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
26 3 0.02
27 121 0.93
28 6 0.05
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.30
Consensus pattern (27 bp):
AAAATTATCGAAATACCCTCAGTTTGT
Found at i:32866972 original size:27 final size:27
Alignment explanation
Indices: 32866781--32866986 Score: 98
Period size: 27 Copynumber: 7.7 Consensus size: 27
32866771 CAAACTGTTC
** *
32866781 AAAATTACCAAAATA-CCTCATGTTTGT
1 AAAATTACCAAAATACCCTCA-GAGTCT
* * * * * *
32866808 AAAATTATCGAAATACCGTCGGATTAT
1 AAAATTACCAAAATACCCTCAGAGTCT
* * * ** *
32866835 AAAATTATCGAAATACCCCCAGTTTGT
1 AAAATTACCAAAATACCCTCAGAGTCT
* * * *
32866862 AAAATTATCGAAATACCCTCA-ATTTGT
1 AAAATTACCAAAATACCCTCAGA-GTCT
* *
32866889 AAAATTATCAAAATA-CCTCCAG-TTCGT
1 AAAATTACCAAAATACCCT-CAGAGTC-T
* * ** *
32866916 AAAATTACCGAAATACCCTCGGTTTGT
1 AAAATTACCAAAATACCCTCAGAGTCT
*
32866943 AAAATTACCAAAATACCCTTAGAGTCT
1 AAAATTACCAAAATACCCTCAGAGTCT
32866970 -AAATTACCAAAATACCC
1 AAAATTACCAAAATACCC
32866987 CTGTAGGGTA
Statistics
Matches: 147, Mismatches: 25, Indels: 15
0.79 0.13 0.08
Matches are distributed among these distances:
26 22 0.15
27 117 0.80
28 8 0.05
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTCAGAGTCT
Found at i:32867000 original size:27 final size:26
Alignment explanation
Indices: 32866887--32867000 Score: 79
Period size: 27 Copynumber: 4.3 Consensus size: 26
32866877 CCCTCAATTT
* * **
32866887 GTAAAATTATCAAAATACCTCCAGTTC
1 GTAAAATTACCAAAATACC-CCTGTGA
* * **
32866914 GTAAAATTACCGAAATACCCTCGGTTT
1 GTAAAATTACCAAAATACCC-CTGTGA
32866941 GTAAAATTACCAAAATA-CCCT-TAGA
1 GTAAAATTACCAAAATACCCCTGT-GA
* *
32866966 GTCTAAATTACCAAAATACCCCTGTAGG
1 GT-AAAATTACCAAAATACCCCTGT-GA
32866994 GTAAAAT
1 GTAAAAT
32867001 GACTATTTTT
Statistics
Matches: 71, Mismatches: 11, Indels: 10
0.77 0.12 0.11
Matches are distributed among these distances:
24 1 0.01
25 3 0.04
26 17 0.24
27 45 0.63
28 5 0.07
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.27
Consensus pattern (26 bp):
GTAAAATTACCAAAATACCCCTGTGA
Found at i:32871139 original size:34 final size:34
Alignment explanation
Indices: 32871094--32871187 Score: 109
Period size: 34 Copynumber: 2.8 Consensus size: 34
32871084 TGGATACTGT
* **
32871094 ACTGAAATGGGCTAAGGCCCACACTGATACTATT
1 ACTGATATGGGCTAAGGCCCACACTGATACTACG
* * *
32871128 ACTG-TATTGGGCTAAGGGCCATACTGATACTGCG
1 ACTGATA-TGGGCTAAGGCCCACACTGATACTACG
*
32871162 ACTGATATGGGCTAAGGCCCAGACTG
1 ACTGATATGGGCTAAGGCCCACACTG
32871188 TTCAACACTA
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
33 1 0.02
34 47 0.94
35 2 0.04
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (34 bp):
ACTGATATGGGCTAAGGCCCACACTGATACTACG
Found at i:32881797 original size:11 final size:13
Alignment explanation
Indices: 32881771--32881799 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
32881761 CAAACGGGCA
32881771 TGTGACACAGGTG
1 TGTGACACAGGTG
32881784 TGTGACACAGGTG
1 TGTGACACAGGTG
32881797 TGT
1 TGT
32881800 CCCTACCGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.21, C:0.14, G:0.38, T:0.28
Consensus pattern (13 bp):
TGTGACACAGGTG
Found at i:32900762 original size:40 final size:40
Alignment explanation
Indices: 32900682--32900860 Score: 274
Period size: 40 Copynumber: 4.5 Consensus size: 40
32900672 TTCGGATGAC
* *
32900682 ATCCGGGCTAAGTCCTGAAGGCA-TGGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
32900721 ATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
32900761 ATCCGGGCTAAGTCCCGAAGGCATTTGTGGTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
32900801 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTAT
*
32900841 ATCC-GGCTAAATCCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGG
32900861 TACTTGGGTT
Statistics
Matches: 131, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
39 37 0.28
40 92 0.70
41 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
Found at i:32909207 original size:40 final size:40
Alignment explanation
Indices: 32909109--32909326 Score: 354
Period size: 40 Copynumber: 5.5 Consensus size: 40
32909099 TTCGGATGAC
*
32909109 ATCCGGGCTAAGTCCCGAAGGCA-TGGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
32909148 ATCC-GGCTAAGTCCCGAAGGCAGTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
32909187 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
32909227 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
32909267 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTAT
*
32909307 ATCC-GGCTAAATCCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGG
32909327 TACTTGGGTT
Statistics
Matches: 170, Mismatches: 6, Indels: 6
0.93 0.03 0.03
Matches are distributed among these distances:
38 18 0.11
39 38 0.22
40 112 0.66
41 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
Found at i:32912053 original size:40 final size:40
Alignment explanation
Indices: 32911999--32912222 Score: 215
Period size: 40 Copynumber: 5.6 Consensus size: 40
32911989 TAACTCATTC
* * *
32911999 AATGCCTTCAGGACTTAACCCGGATTTTA-AAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAGAAACTCGCACA
* * *
32912039 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGGACA
1 AATGCCTTCGGGACTTAACCCGGAATTAGAAACTCGCACA
* * *
32912079 AAGGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAGAAACTCGCACA
*
32912119 AAGGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAGA-AACTCGCACA
* ** ** *
32912159 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAGAAAC-TCGCACA
*
32912200 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
32912223 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 19, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
39 8 0.05
40 138 0.88
41 11 0.07
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAGAAACTCGCACA
Found at i:32912061 original size:79 final size:80
Alignment explanation
Indices: 32911962--32912222 Score: 212
Period size: 80 Copynumber: 3.3 Consensus size: 80
32911952 CTCGTTCAAG
* * * ** * *
32911962 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATTC-AATGCCTTCAGGACTTAACCCGGATT
1 TGCCTTCGGGACTTAACCCGGAAT-TAGTAACTCAGACAAAGGCCTTCAGGACTTAACCCGGA-A
*
32912025 TTA-AAACTCGCACGAA
64 TTAGAAACTCGCACAAA
* * *
32912041 TGCCTTCGGGACTTAACCCGGAATTAGTATCTCGGACAAAGGCCTTCGGGACTTAACCCGGAATT
1 TGCCTTCGGGACTTAACCCGGAATTAGTAACTCAGACAAAGGCCTTCAGGACTTAACCCGGAATT
* *
32912106 AGTATCTCGCACAAA
66 AGAAACTCGCACAAA
* * ** **
32912121 GGCCTTCGGGACTTAACCCGGAATTAATAACTC-GCACAAATACCTTC-GGATCTTAGTCCGG-A
1 TGCCTTCGGGACTTAACCCGGAATTAGTAACTCAG-ACAAAGGCCTTCAGGA-CTTAACCCGGAA
** *
32912183 TATAGTCACTTAGCACAAA
64 T-TAGAAAC-TCGCACAAA
*
32912202 -GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGACTTAACCCGGA
32912223 CAGCATTCAA
Statistics
Matches: 151, Mismatches: 24, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
79 37 0.25
80 106 0.70
81 8 0.05
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.25
Consensus pattern (80 bp):
TGCCTTCGGGACTTAACCCGGAATTAGTAACTCAGACAAAGGCCTTCAGGACTTAACCCGGAATT
AGAAACTCGCACAAA
Found at i:32912182 original size:120 final size:120
Alignment explanation
Indices: 32912002--32912222 Score: 281
Period size: 120 Copynumber: 1.8 Consensus size: 120
32911992 CTCATTCAAT
* * *
32912002 GCCTTCAGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGACTTAACCCGGA-ATT
1 GCCTTCAGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGGACTTAACCCGGATA-T
* *
32912066 AGT-A-TCTCGGACAAAGGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAG
65 AGTCACT-TAGCACAAA-GCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAG
* **
32912122 GCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTC-GGATCTTAGTCCGGATA
1 GCCTTCAGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGGA-CTTAACCCGGATA
*
32912185 TAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 TAGTCACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
32912223 CAGCATTCAA
Statistics
Matches: 87, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
119 7 0.08
120 70 0.80
121 9 0.10
122 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (120 bp):
GCCTTCAGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGGACTTAACCCGGATATA
GTCACTTAGCACAAAGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAG
Found at i:32914541 original size:14 final size:14
Alignment explanation
Indices: 32914522--32914548 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
32914512 ATTTGCTTGA
32914522 TTATTCTATAACTG
1 TTATTCTATAACTG
32914536 TTATTCTATAACT
1 TTATTCTATAACT
32914549 TGCTTGATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.04, T:0.52
Consensus pattern (14 bp):
TTATTCTATAACTG
Found at i:32915496 original size:19 final size:19
Alignment explanation
Indices: 32915444--32915496 Score: 79
Period size: 19 Copynumber: 2.8 Consensus size: 19
32915434 AAATGAGAAT
* *
32915444 CAGAATTAGAATCAAGTGA
1 CAGAATTAGAATCAGGTAA
*
32915463 CAGAATTAGTATCAGGTAA
1 CAGAATTAGAATCAGGTAA
32915482 CAGAATTAGAATCAG
1 CAGAATTAGAATCAG
32915497 AATGTGAATG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.45, C:0.11, G:0.21, T:0.23
Consensus pattern (19 bp):
CAGAATTAGAATCAGGTAA
Found at i:32916180 original size:54 final size:53
Alignment explanation
Indices: 32916118--32916220 Score: 145
Period size: 54 Copynumber: 1.9 Consensus size: 53
32916108 CAAAATGGTA
* *
32916118 ATTTTACCCCACAAGGTTATCTCGGTAATTCTACCCTA-TAGGGGTATTTAAGT
1 ATTTTACCCCACAAGGGTATATCGGTAATTCTACCCTACT-GGGGTATTTAAGT
* *
32916171 ATTTCTACCCTACAAGGGTATATTGGTAATTCTACCCTACTGGGGTATTT
1 ATTT-TACCCCACAAGGGTATATCGGTAATTCTACCCTACTGGGGTATTT
32916221 TGGTAATTTA
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
53 4 0.09
54 39 0.89
55 1 0.02
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.37
Consensus pattern (53 bp):
ATTTTACCCCACAAGGGTATATCGGTAATTCTACCCTACTGGGGTATTTAAGT
Found at i:32916223 original size:27 final size:27
Alignment explanation
Indices: 32916141--32916228 Score: 106
Period size: 27 Copynumber: 3.3 Consensus size: 27
32916131 AGGTTATCTC
*
32916141 GGTAATTCTACCCTA-TAGGGGTATTTA
1 GGTAATTCTACCCTACT-GGGGTATTTT
* * ** *
32916168 AGTATTTCTACCCTACAAGGGTATATT
1 GGTAATTCTACCCTACTGGGGTATTTT
32916195 GGTAATTCTACCCTACTGGGGTATTTT
1 GGTAATTCTACCCTACTGGGGTATTTT
32916222 GGTAATT
1 GGTAATT
32916229 TAAAAATCGA
Statistics
Matches: 49, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.39
Consensus pattern (27 bp):
GGTAATTCTACCCTACTGGGGTATTTT
Found at i:32917189 original size:122 final size:122
Alignment explanation
Indices: 32916972--32917215 Score: 425
Period size: 122 Copynumber: 2.0 Consensus size: 122
32916962 CTCCAACACT
*
32916972 TCTCAGCACACTTAACCACTAAAACAAGCCTTCATTAACGAAATTTACATGCACAACAAAATATT
1 TCTCAGCACACTTAACCACTAAAACAAACCTTCATTAACGAAATTTACATGCACAACAAAATATT
*
32917037 ATAAGCTGCCTTCAACCGCTCACATGCTCAAGGCCCAAAACTTCTAAGCCCAAATTC
66 ATAAGCTGCCTTCAACCGCTCACATACTCAAGGCCCAAAACTTCTAAGCCCAAATTC
* * *
32917094 TCTCAGTACACTTAACCACTAAAACAAACCTTTATTAACTAAATTTACATGCACAACAAAATATT
1 TCTCAGCACACTTAACCACTAAAACAAACCTTCATTAACGAAATTTACATGCACAACAAAATATT
* *
32917159 ATAAGCTGCCTTCAACTGCTCACATACTCAAGTCCCAAAACTTCTAAGCCCAAATTC
66 ATAAGCTGCCTTCAACCGCTCACATACTCAAGGCCCAAAACTTCTAAGCCCAAATTC
32917216 AGGGTGTTAC
Statistics
Matches: 115, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
122 115 1.00
ACGTcount: A:0.39, C:0.29, G:0.07, T:0.25
Consensus pattern (122 bp):
TCTCAGCACACTTAACCACTAAAACAAACCTTCATTAACGAAATTTACATGCACAACAAAATATT
ATAAGCTGCCTTCAACCGCTCACATACTCAAGGCCCAAAACTTCTAAGCCCAAATTC
Found at i:32919705 original size:13 final size:13
Alignment explanation
Indices: 32919687--32919712 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32919677 AAAGTAATCG
32919687 TACACGGGCGTGT
1 TACACGGGCGTGT
32919700 TACACGGGCGTGT
1 TACACGGGCGTGT
32919713 CGCTACCGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.23, G:0.38, T:0.23
Consensus pattern (13 bp):
TACACGGGCGTGT
Found at i:32923656 original size:34 final size:33
Alignment explanation
Indices: 32923601--32923671 Score: 88
Period size: 34 Copynumber: 2.1 Consensus size: 33
32923591 ATGCATTTTG
*
32923601 GATACTATACTGAAATGGGCTATGACCCACACT
1 GATACTATACTGAAATGGGCTAAGACCCACACT
* * * *
32923634 GATACTATTACTGTATTTGGCTAAGGCCCACACT
1 GATACTA-TACTGAAATGGGCTAAGACCCACACT
32923668 GATA
1 GATA
32923672 TTGCAACTGA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
33 7 0.22
34 25 0.78
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (33 bp):
GATACTATACTGAAATGGGCTAAGACCCACACT
Found at i:32933380 original size:42 final size:42
Alignment explanation
Indices: 32933333--32933424 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
32933323 TGGCCTATAG
* ** *
32933333 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
* *
32933375 GCCCATTTCAATATTATATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
32933417 GCCCATTT
1 GCCCATTT
32933425 GGGGAGACTA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:32933598 original size:25 final size:26
Alignment explanation
Indices: 32933557--32933692 Score: 172
Period size: 26 Copynumber: 5.3 Consensus size: 26
32933547 CTGGAGGCCT
32933557 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
** *
32933581 AGCCCTTTTCGGTAAACTAGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
*
32933606 AGCCCTTTTCAATAAACTAGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
**
32933632 AGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
*
32933658 AGCCCTTTTCAATAAACTGGGACATA
1 AGCCCTTTTCAATAAACTGGGGCATA
32933684 AGCCCTTTT
1 AGCCCTTTT
32933693 GCACTTCCTC
Statistics
Matches: 98, Mismatches: 11, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
23 5 0.05
24 5 0.05
25 32 0.33
26 56 0.57
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.28
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:32933684 original size:52 final size:50
Alignment explanation
Indices: 32933557--32933692 Score: 197
Period size: 52 Copynumber: 2.7 Consensus size: 50
32933547 CTGGAGGCCT
32933557 AGCCTCTTTT-AAT-AACTGGGGCA-AAGCCCTTTTCGGTAAACTAGGGCAA
1 AGCC-CTTTTCAATAAACT-GGGCATAAGCCCTTTTCGGTAAACTAGGGCAA
*
32933606 AGCCCTTTTCAATAAACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACT-GGGCATAAGCCCTTTTCGGTAAACTAGGGCA-A
32933658 AGCCCTTTTCAATAAACTGGGACATAAGCCCTTTT
1 AGCCCTTTTCAATAAACTGGG-CATAAGCCCTTTT
32933693 GCACTTCCTC
Statistics
Matches: 80, Mismatches: 2, Indels: 7
0.90 0.02 0.08
Matches are distributed among these distances:
48 5 0.06
49 7 0.09
50 9 0.11
51 27 0.34
52 32 0.40
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.28
Consensus pattern (50 bp):
AGCCCTTTTCAATAAACTGGGCATAAGCCCTTTTCGGTAAACTAGGGCAA
Found at i:32933867 original size:25 final size:25
Alignment explanation
Indices: 32933824--32933871 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
32933814 ATAATTAAAC
* **
32933824 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGTAAAACAGTCATTTTTA
32933849 CCTAGGGGTAAAACAGTCATTTT
1 CCTAGGGGTAAAACAGTCATTTT
32933872 CATACTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (25 bp):
CCTAGGGGTAAAACAGTCATTTTTA
Found at i:32934645 original size:27 final size:27
Alignment explanation
Indices: 32934615--32934841 Score: 151
Period size: 27 Copynumber: 8.3 Consensus size: 27
32934605 AATCTACAAG
*
32934615 CCAAGGGTATTTCAGTAATTTTGTAAA
1 CCAAGGGTATTTTAGTAATTTTGTAAA
*
32934642 CCAATGGTATTTCTA-TAATTTT-TAGAAA
1 CCAAGGGTATTT-TAGTAATTTTGT--AAA
*
32934670 GTCAAGGGTATTTCTA-TAATTTTGTAAA
1 -CCAAGGGTATTT-TAGTAATTTTGTAAA
* * * **
32934698 TCAGGGGTATTTTGGTAATTTTACAAA
1 CCAAGGGTATTTTAGTAATTTTGTAAA
*** ***
32934725 TTGAGGGTATTTT-GATAATTTCACAAA
1 CCAAGGGTATTTTAG-TAATTTTGTAAA
* **
32934752 CC-AGTGGTATTTTGGTAATTTTACAAA
1 CCAAG-GGTATTTTAGTAATTTTGTAAA
* *
32934779 -CTAGAGGTATTTTGGTAATTTTGTAAA
1 CCAAG-GGTATTTTAGTAATTTTGTAAA
32934806 CCAAGGGTATTTTAGTAATTTTGTAAA
1 CCAAGGGTATTTTAGTAATTTTGTAAA
* *
32934833 TCGAGGGTA
1 CCAAGGGTA
32934842 AAACAGTAAT
Statistics
Matches: 167, Mismatches: 22, Indels: 22
0.79 0.10 0.10
Matches are distributed among these distances:
26 6 0.04
27 129 0.77
28 11 0.07
29 20 0.12
30 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (27 bp):
CCAAGGGTATTTTAGTAATTTTGTAAA
Found at i:32934761 original size:54 final size:54
Alignment explanation
Indices: 32934702--32934841 Score: 167
Period size: 54 Copynumber: 2.6 Consensus size: 54
32934692 TGTAAATCAG
32934702 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGATAATTTCACAAACC-A
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGATAATTTCACAAACCAA
* * ***
32934755 GTGGTATTTTGGTAATTTTACAAACT-AGAGGTATTTTGGTAATTTTGTAAACCAA
1 G-GGTATTTTGGTAATTTTACAAATTGAG-GGTATTTTGATAATTTCACAAACCAA
* ** *
32934810 GGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTA
32934842 AAACAGTAAT
Statistics
Matches: 73, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
53 3 0.04
54 66 0.90
55 4 0.05
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.41
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGATAATTTCACAAACCAA
Found at i:32934849 original size:27 final size:27
Alignment explanation
Indices: 32934820--32934976 Score: 224
Period size: 27 Copynumber: 5.8 Consensus size: 27
32934810 GGGTATTTTA
* * *
32934820 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
**
32934847 GTAATTCTATAAATCGAGGGTAAAATT
1 GTAATTCTATAAATCGAGGGTAAAACG
*
32934874 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
32934901 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
32934928 GTAATTCTGTAAATCAAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
32934955 GTAATTCTGTAAATTGAGGGTA
1 GTAATTCTATAAATCGAGGGTA
32934977 CTTTGGTAAT
Statistics
Matches: 120, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 120 1.00
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.30
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:32934984 original size:81 final size:81
Alignment explanation
Indices: 32934809--32934987 Score: 232
Period size: 81 Copynumber: 2.2 Consensus size: 81
32934799 TTGTAAACCA
* * * * * **
32934809 AGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATT
1 AGGGTAATTTGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACG
32934874 GTAATTCTATAAATCG
66 GTAATTCTATAAATCG
** * *
32934890 AGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACG
1 AGGGTAATTTGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACG
* *
32934955 GTAATTCTGTAAATTG
66 GTAATTCTATAAATCG
*
32934971 AGGGTACTTTGGTAATT
1 AGGGTAATTTGGTAATT
32934988 TTAAAAATTG
Statistics
Matches: 82, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 82 1.00
ACGTcount: A:0.37, C:0.08, G:0.22, T:0.32
Consensus pattern (81 bp):
AGGGTAATTTGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACG
GTAATTCTATAAATCG
Found at i:32938077 original size:56 final size:56
Alignment explanation
Indices: 32937986--32938144 Score: 207
Period size: 56 Copynumber: 2.8 Consensus size: 56
32937976 TCTTACATGT
* *
32937986 AATCACATATCGATGCCACTGT-CTCAGACAG-GGTCTTACTCGCACACATAAATC-A
1 AATCACATATCGATGCCAATGTACT-AAAC-GTGGTCTTACTCGCACACATAAATCGA
*
32938041 GAATCACATATCGATGCCAATGTACTAAACGTGGTCTTACTCGCACACATATATCGA
1 -AATCACATATCGATGCCAATGTACTAAACGTGGTCTTACTCGCACACATAAATCGA
** * *
32938098 AATCACATATCGATGCCAACATATTAAACGTGGTCTTACTCACACAC
1 AATCACATATCGATGCCAATGTACTAAACGTGGTCTTACTCGCACAC
32938145 CTATATCAAT
Statistics
Matches: 93, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
55 1 0.01
56 89 0.96
57 3 0.03
ACGTcount: A:0.34, C:0.27, G:0.14, T:0.25
Consensus pattern (56 bp):
AATCACATATCGATGCCAATGTACTAAACGTGGTCTTACTCGCACACATAAATCGA
Found at i:32940972 original size:8 final size:8
Alignment explanation
Indices: 32940961--32940989 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
32940951 GCAAAACAAC
32940961 AAAAGCCG
1 AAAAGCCG
32940969 AAAAGCCG
1 AAAAGCCG
32940977 AAAAGCCG
1 AAAAGCCG
32940985 AAAAG
1 AAAAG
32940990 TGGGCTATCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.55, C:0.21, G:0.24, T:0.00
Consensus pattern (8 bp):
AAAAGCCG
Found at i:32941745 original size:34 final size:34
Alignment explanation
Indices: 32941670--32941745 Score: 80
Period size: 34 Copynumber: 2.2 Consensus size: 34
32941660 TTGCATACTT
* **
32941670 TACTGAAATGGGCTAAGGCCCAAACTACCACTGT
1 TACTGAAATGAGCTAAGGCCCAAACTACCACTAC
* * * **
32941704 TATTGAAATGAGCTCAGGCCCAGACTACTTCTAC
1 TACTGAAATGAGCTAAGGCCCAAACTACCACTAC
32941738 TACTGAAA
1 TACTGAAA
32941746 AAGGGGCTAA
Statistics
Matches: 33, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (34 bp):
TACTGAAATGAGCTAAGGCCCAAACTACCACTAC
Found at i:32943514 original size:45 final size:45
Alignment explanation
Indices: 32943463--32943554 Score: 184
Period size: 45 Copynumber: 2.0 Consensus size: 45
32943453 ATCAAGAATG
32943463 AACACAACATATAATTATATCTCATATACATGTATCATCCATTTC
1 AACACAACATATAATTATATCTCATATACATGTATCATCCATTTC
32943508 AACACAACATATAATTATATCTCATATACATGTATCATCCATTTC
1 AACACAACATATAATTATATCTCATATACATGTATCATCCATTTC
32943553 AA
1 AA
32943555 TTCTAAATAT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.41, C:0.22, G:0.02, T:0.35
Consensus pattern (45 bp):
AACACAACATATAATTATATCTCATATACATGTATCATCCATTTC
Found at i:32947480 original size:18 final size:18
Alignment explanation
Indices: 32947457--32947510 Score: 72
Period size: 18 Copynumber: 3.0 Consensus size: 18
32947447 TTTAAGTTAG
* *
32947457 TAACAGTAAATAGTGCAA
1 TAACAGTAAAAAATGCAA
32947475 TAACAGTAAAAAATGCAA
1 TAACAGTAAAAAATGCAA
* *
32947493 TATCAGTAAACAATGCAA
1 TAACAGTAAAAAATGCAA
32947511 CATTAGTAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.54, C:0.13, G:0.13, T:0.20
Consensus pattern (18 bp):
TAACAGTAAAAAATGCAA
Found at i:32947510 original size:36 final size:36
Alignment explanation
Indices: 32947460--32947542 Score: 85
Period size: 36 Copynumber: 2.3 Consensus size: 36
32947450 AAGTTAGTAA
* * *
32947460 CAGTAAATAGTGCAATAACAGTAAAAAATGCAATAT
1 CAGTAAACAATGCAACAACAGTAAAAAATGCAATAT
** * * *
32947496 CAGTAAACAATGCAACATTAGTAAACAGTGCAGTAT
1 CAGTAAACAATGCAACAACAGTAAAAAATGCAATAT
*
32947532 CAGCAAACAAT
1 CAGTAAACAAT
32947543 ATGCAAGTCC
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.49, C:0.16, G:0.14, T:0.20
Consensus pattern (36 bp):
CAGTAAACAATGCAACAACAGTAAAAAATGCAATAT
Found at i:32947518 original size:18 final size:18
Alignment explanation
Indices: 32947478--32947542 Score: 67
Period size: 18 Copynumber: 3.6 Consensus size: 18
32947468 AGTGCAATAA
* *
32947478 CAGTAAAAAATGCAATAT
1 CAGTAAACAATGCAACAT
32947496 CAGTAAACAATGCAACAT
1 CAGTAAACAATGCAACAT
* * **
32947514 TAGTAAACAGTGCAGTAT
1 CAGTAAACAATGCAACAT
*
32947532 CAGCAAACAAT
1 CAGTAAACAAT
32947543 ATGCAAGTCC
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 38 1.00
ACGTcount: A:0.49, C:0.17, G:0.14, T:0.20
Consensus pattern (18 bp):
CAGTAAACAATGCAACAT
Found at i:32947999 original size:80 final size:79
Alignment explanation
Indices: 32947865--32948157 Score: 370
Period size: 80 Copynumber: 3.7 Consensus size: 79
32947855 CAATATATAT
* * * * *
32947865 CACATAAGGGAAAAACAATCAATTTACCATATAGGGGTATTTCAGTTATTTTACCAACTAGGGTA
1 CACATAAGGGAAAAACAGTCAATTTACCATGTAGGGGCATTTCAGTCATTTTACCAACTAGGGAA
*
32947930 AAACAGTCATTTTA
66 AAACAGTAATTTTA
* * * * *
32947944 CAACATAAGGGCAAAATAGTCAATTTTCCATGTAGGGCCATTTCGGTCATTTTACCAACTAGGGA
1 C-ACATAAGGGAAAAACAGTCAATTTACCATGTAGGGGCATTTCAGTCATTTTACCAACTAGGGA
* *
32948009 AAAACAATAAATTTA
65 AAAACAGTAATTTTA
* * * *
32948024 CCACATAAGGGAAAAATAGTCAATTTACCATGTAGGGGCATTTCAGTCATTTTACCAACAAGAGC
1 -CACATAAGGGAAAAACAGTCAATTTACCATGTAGGGGCATTTCAGTCATTTTACCAACTAGGGA
* *
32948089 AAAACGGTTATTTTA
65 AAAACAGTAATTTTA
* *
32948104 GCACATAAGGGAAAAACAGTCAATTTACAATTTAGGGGCATTTCAGTCATTTTA
1 -CACATAAGGGAAAAACAGTCAATTTACCATGTAGGGGCATTTCAGTCATTTTA
32948158 TCCACTAAGG
Statistics
Matches: 184, Mismatches: 28, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
79 1 0.01
80 182 0.99
81 1 0.01
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.29
Consensus pattern (79 bp):
CACATAAGGGAAAAACAGTCAATTTACCATGTAGGGGCATTTCAGTCATTTTACCAACTAGGGAA
AAACAGTAATTTTA
Found at i:32948129 original size:160 final size:160
Alignment explanation
Indices: 32947865--32948157 Score: 417
Period size: 160 Copynumber: 1.8 Consensus size: 160
32947855 CAATATATAT
* * * * *
32947865 CACATAAGGGAAAAACAATCAATTTACCATATAGGGGTATTTCAGTTATTTTACCAACTAGGGTA
1 CACATAAGGGAAAAACAATCAATTTACCATATAGGGGCATTTCAGTCATTTTACCAACAAGAGCA
* * * * *
32947930 AAACAGTCATTTTACAACATAAGGGCAAAATAGTCAATTTTCCATGTAGGGCCATTTCGGTCATT
66 AAACAGTCATTTTACAACATAAGGGAAAAACAGTCAATTTACAATGTAGGGCCATTTCAGTCATT
32947995 TTACCAACTAGGGAAAAACAATAAATTTAC
131 TTACCAACTAGGGAAAAACAATAAATTTAC
* * *
32948025 CACATAAGGGAAAAATAGTCAATTTACCATGTAGGGGCATTTCAGTCATTTTACCAACAAGAGCA
1 CACATAAGGGAAAAACAATCAATTTACCATATAGGGGCATTTCAGTCATTTTACCAACAAGAGCA
* * * *
32948090 AAACGGTTATTTTAGC-ACATAAGGGAAAAACAGTCAATTTACAATTTAGGGGCATTTCAGTCAT
66 AAACAGTCATTTTA-CAACATAAGGGAAAAACAGTCAATTTACAATGTAGGGCCATTTCAGTCAT
32948154 TTTA
130 TTTA
32948158 TCCACTAAGG
Statistics
Matches: 115, Mismatches: 17, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
160 114 0.99
161 1 0.01
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.29
Consensus pattern (160 bp):
CACATAAGGGAAAAACAATCAATTTACCATATAGGGGCATTTCAGTCATTTTACCAACAAGAGCA
AAACAGTCATTTTACAACATAAGGGAAAAACAGTCAATTTACAATGTAGGGCCATTTCAGTCATT
TTACCAACTAGGGAAAAACAATAAATTTAC
Found at i:32948130 original size:27 final size:27
Alignment explanation
Indices: 32947865--32948131 Score: 96
Period size: 27 Copynumber: 10.0 Consensus size: 27
32947855 CAATATATAT
*
32947865 CACATAAGGGAAAAACAATCAATTTAC
1 CACATAAGGGAAAAACAGTCAATTTAC
* * * *** * *
32947892 CATATAGGGGTATTTCAGTTATTTTAC
1 CACATAAGGGAAAAACAGTCAATTTAC
* *
32947919 CA-ACT-AGGGTAAAACAGTCATTTTAC
1 CACA-TAAGGGAAAAACAGTCAATTTAC
* * * *
32947945 AACATAAGGGCAAAATAGTCAATTTTC
1 CACATAAGGGAAAAACAGTCAATTTAC
** * *** * *
32947972 CATGT-AGGGCCATTTCGGTCATTTTAC
1 CACATAAGGG-AAAAACAGTCAATTTAC
* *
32947999 CA-ACT-AGGGAAAAACAATAAATTTAC
1 CACA-TAAGGGAAAAACAGTCAATTTAC
*
32948025 CACATAAGGGAAAAATAGTCAATTTAC
1 CACATAAGGGAAAAACAGTCAATTTAC
** * * *** *
32948052 CATGTAGGGGCATTTCAGTCATTTTAC
1 CACATAAGGGAAAAACAGTCAATTTAC
* * * * * * *
32948079 CA-ACAAGAGCAAAACGGTTATTTTAG
1 CACATAAGGGAAAAACAGTCAATTTAC
32948105 CACATAAGGGAAAAACAGTCAATTTAC
1 CACATAAGGGAAAAACAGTCAATTTAC
32948132 AATTTAGGGG
Statistics
Matches: 165, Mismatches: 67, Indels: 16
0.67 0.27 0.06
Matches are distributed among these distances:
26 51 0.31
27 114 0.69
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.27
Consensus pattern (27 bp):
CACATAAGGGAAAAACAGTCAATTTAC
Found at i:32951861 original size:16 final size:16
Alignment explanation
Indices: 32951826--32951864 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
32951816 GTAGATCGGT
* **
32951826 AAAAGCCGAAATGCTG
1 AAAAGTCGAAATGCCA
32951842 AAAAGTCGAAATGCCA
1 AAAAGTCGAAATGCCA
32951858 AAAAGTC
1 AAAAGTC
32951865 AAAAATTTGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.49, C:0.18, G:0.21, T:0.13
Consensus pattern (16 bp):
AAAAGTCGAAATGCCA
Found at i:32960031 original size:17 final size:17
Alignment explanation
Indices: 32959999--32960043 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
32959989 GAATAGGCCA
*
32959999 AATGGGCCAAAATGGGCT
1 AATGGGCC-CAATGGGCT
32960017 AATGGGCCCAATGGGCT
1 AATGGGCCCAATGGGCT
**
32960034 GTTGGGCCCA
1 AATGGGCCCA
32960044 TATTTGGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
17 16 0.67
18 8 0.33
ACGTcount: A:0.24, C:0.22, G:0.36, T:0.18
Consensus pattern (17 bp):
AATGGGCCCAATGGGCT
Found at i:32960160 original size:28 final size:29
Alignment explanation
Indices: 32960141--32960246 Score: 112
Period size: 28 Copynumber: 3.8 Consensus size: 29
32960131 TATAAATTAG
*
32960141 ATTGGGCCTAATGGGCCATATGAACGTGA
1 ATTGGGCCTAATGGGCCATATGAAAGTGA
* * *
32960170 ATTGGGCTTGATGGG-CATATGAACGTGA
1 ATTGGGCCTAATGGGCCATATGAAAGTGA
*
32960198 ATTGGGCCTGATGGGCCATAT-AAA-TGA
1 ATTGGGCCTAATGGGCCATATGAAAGTGA
* *
32960225 GA-TGGGCCTAGTGAGCCATATG
1 -ATTGGGCCTAATGGGCCATATG
32960247 CATGTATATA
Statistics
Matches: 67, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
27 19 0.28
28 30 0.45
29 18 0.27
ACGTcount: A:0.26, C:0.15, G:0.33, T:0.25
Consensus pattern (29 bp):
ATTGGGCCTAATGGGCCATATGAAAGTGA
Found at i:32960176 original size:29 final size:29
Alignment explanation
Indices: 32960141--32960218 Score: 131
Period size: 28 Copynumber: 2.7 Consensus size: 29
32960131 TATAAATTAG
*
32960141 ATTGGGCCTAATGGGCCATATGAACGTGA
1 ATTGGGCCTGATGGGCCATATGAACGTGA
*
32960170 ATTGGGCTTGATGGG-CATATGAACGTGA
1 ATTGGGCCTGATGGGCCATATGAACGTGA
32960198 ATTGGGCCTGATGGGCCATAT
1 ATTGGGCCTGATGGGCCATAT
32960219 AAATGAGATG
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
28 27 0.60
29 18 0.40
ACGTcount: A:0.24, C:0.15, G:0.33, T:0.27
Consensus pattern (29 bp):
ATTGGGCCTGATGGGCCATATGAACGTGA
Found at i:32964328 original size:29 final size:29
Alignment explanation
Indices: 32964255--32964373 Score: 134
Period size: 29 Copynumber: 4.2 Consensus size: 29
32964245 CACATACCTG
* * * *
32964255 TATATGGCCCATTAGACCTAACT-ATATT
1 TATATGGCCCATTAGGCCCAAATCACATT
* *
32964283 CACATGGCCCATTAGGCCCAAATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
** *
32964312 TATATGGCCTTTTAGGCCCAAATCACATC
1 TATATGGCCCATTAGGCCCAAATCACATT
*
32964341 TATGTGGCCCATTAGGCCCAAATCACA-T
1 TATATGGCCCATTAGGCCCAAATCACATT
32964369 TATAT
1 TATAT
32964374 TCATGCTCAC
Statistics
Matches: 74, Mismatches: 16, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
28 22 0.30
29 52 0.70
ACGTcount: A:0.30, C:0.27, G:0.13, T:0.29
Consensus pattern (29 bp):
TATATGGCCCATTAGGCCCAAATCACATT
Found at i:32964611 original size:16 final size:16
Alignment explanation
Indices: 32964585--32964627 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
32964575 GTAGCCAAAC
*
32964585 TTTCAGCTTTTCAGCA
1 TTTCGGCTTTTCAGCA
* *
32964601 TTTTGGCTTTTCGGCA
1 TTTCGGCTTTTCAGCA
32964617 TTTCGGCTTTT
1 TTTCGGCTTTT
32964628 GATGATCTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.09, C:0.21, G:0.19, T:0.51
Consensus pattern (16 bp):
TTTCGGCTTTTCAGCA
Found at i:32966482 original size:55 final size:53
Alignment explanation
Indices: 32966327--32966534 Score: 215
Period size: 55 Copynumber: 3.8 Consensus size: 53
32966317 ATCCTTTTGA
*
32966327 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACAT-GTATCCTTGCCTTATAG
* * * * *
32966380 AACTCACCAAAGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAG
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACAT-GTATCC-TTGCCTTATAG
* * *
32966434 TAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGA-
1 -AACTTACCAATGCCATGTCTTGACATGGTCTTACATG-TATCCTTGCCTTATAG
* * *
32966488 AACCTTACCAATTGCCATGACTTGGCATGGTCTTCCATGGTATCCTT
1 AA-CTTACCAA-TGCCATGTCTTGACATGGTCTTACAT-GTATCCTT
32966535 AAACCCTAAT
Statistics
Matches: 128, Mismatches: 19, Indels: 14
0.80 0.12 0.09
Matches are distributed among these distances:
52 2 0.02
53 45 0.35
54 9 0.07
55 69 0.54
56 3 0.02
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (53 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGTATCCTTGCCTTATAG
Found at i:32970608 original size:29 final size:29
Alignment explanation
Indices: 32970572--32970654 Score: 132
Period size: 29 Copynumber: 2.9 Consensus size: 29
32970562 TTCACATAGA
32970572 CCATTAGGCCCAAATCACATTTATATCTC
1 CCATTAGGCCCAAATCACATTTATATCTC
* * *
32970601 CCTTTAGGCCCAAATCACATTTATGTTTC
1 CCATTAGGCCCAAATCACATTTATATCTC
32970630 CCATTAGGCCCAAATCACA-TTATAT
1 CCATTAGGCCCAAATCACATTTATAT
32970655 TCATGCTCAC
Statistics
Matches: 49, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
28 5 0.10
29 44 0.90
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (29 bp):
CCATTAGGCCCAAATCACATTTATATCTC
Found at i:32981713 original size:28 final size:28
Alignment explanation
Indices: 32981647--32981774 Score: 175
Period size: 28 Copynumber: 4.5 Consensus size: 28
32981637 CATGAGATTG
* * **
32981647 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
32981676 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
32981704 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
32981733 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
32981761 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
32981775 GACTTACTAT
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 45 0.51
29 44 0.49
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:32981736 original size:57 final size:57
Alignment explanation
Indices: 32981647--32981774 Score: 186
Period size: 57 Copynumber: 2.2 Consensus size: 57
32981637 CATGAGATTG
*
32981647 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
* * * *
32981704 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATATA
*
32981761 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
32981775 GACTTACTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
Found at i:32989766 original size:28 final size:28
Alignment explanation
Indices: 32989700--32989827 Score: 175
Period size: 28 Copynumber: 4.5 Consensus size: 28
32989690 CATGAGATTG
* * **
32989700 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
32989729 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
32989757 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
32989786 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
32989814 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
32989828 GACTTACTAT
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 45 0.51
29 44 0.49
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:32989789 original size:57 final size:57
Alignment explanation
Indices: 32989700--32989827 Score: 186
Period size: 57 Copynumber: 2.2 Consensus size: 57
32989690 CATGAGATTG
*
32989700 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
* * * *
32989757 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATATA
*
32989814 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
32989828 GACTTACTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
Found at i:32991957 original size:43 final size:43
Alignment explanation
Indices: 32991829--32991944 Score: 214
Period size: 43 Copynumber: 2.7 Consensus size: 43
32991819 TATTCGGGCC
32991829 TGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGA
1 TGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGA
*
32991872 TGTATATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGA
1 TGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGA
*
32991915 TGTGTATTCGAGCCTTCGTGCCTAGCAGGC
1 TGTGTATTCGGGCCTTCGTGCCTAGCAGGC
32991945 GTAATGCCGG
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 70 1.00
ACGTcount: A:0.11, C:0.26, G:0.33, T:0.30
Consensus pattern (43 bp):
TGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGA
Found at i:32993412 original size:27 final size:26
Alignment explanation
Indices: 32993364--32993417 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
32993354 GCGAGGCTGC
*
32993364 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
32993390 CAGATATATGTGGCGAGGCCACCAGAA
1 CAGATAT-TGTGACGAAGCCACCAGAA
32993417 C
1 C
32993418 GCTTCCTCCA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 7 0.29
27 17 0.71
ACGTcount: A:0.35, C:0.22, G:0.26, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:33007715 original size:40 final size:38
Alignment explanation
Indices: 33007660--33007842 Score: 172
Period size: 40 Copynumber: 4.6 Consensus size: 38
33007650 GTACTCATTC
*
33007660 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA--TTAAAACTCGCACA
* *
33007700 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGG-ATTA-AAACTCGCACA
*
33007740 AAGGCCTTCGGGACTTAACCCGGATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTAA-AACTCGCACA
* ** ** *
33007779 AATACCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAT-TA-AAAC-TCGCACA
*
33007820 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
33007843 CAGCATTCAT
Statistics
Matches: 120, Mismatches: 15, Indels: 16
0.79 0.10 0.11
Matches are distributed among these distances:
38 3 0.03
39 33 0.28
40 72 0.60
41 12 0.10
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (38 bp):
AATGCCTTCGGGACTTAACCCGGATTAAAACTCGCACA
Found at i:33007828 original size:79 final size:79
Alignment explanation
Indices: 33007663--33007842 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 79
33007653 CTCATTCAAT
* *
33007663 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGACTTAACCCGGAATTA
1 GCCTTCGGGACTTAACCCGGA-TTTAAAACTCGCACAAATACCTTCGGGACTTAACCCGGAATTA
*
33007728 GTATCTCGCACAAAG
65 GTATCTAGCACAAAG
**
33007743 GCCTTCGGGACTTAACCCGGA-TTAATAACTCGCACAAATACCTTC-GGATCTTAGTCCGG-ATA
1 GCCTTCGGGACTTAACCCGGATTTAA-AACTCGCACAAATACCTTCGGGA-CTTAACCCGGAAT-
33007805 TAGTCA-CTTAGCACAAA-
63 TAGT-ATC-TAGCACAAAG
*
33007822 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
33007843 CAGCATTCAT
Statistics
Matches: 89, Mismatches: 6, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
78 9 0.10
79 50 0.56
80 30 0.34
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (79 bp):
GCCTTCGGGACTTAACCCGGATTTAAAACTCGCACAAATACCTTCGGGACTTAACCCGGAATTAG
TATCTAGCACAAAG
Found at i:33015552 original size:39 final size:40
Alignment explanation
Indices: 33015475--33015621 Score: 120
Period size: 40 Copynumber: 3.7 Consensus size: 40
33015465 TAGCTCCTCG
* * *
33015475 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
33015515 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
33015554 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
33015594 CACAAAGGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
33015622 ATTAATAACT
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
39 27 0.29
40 65 0.71
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:33015632 original size:80 final size:80
Alignment explanation
Indices: 33015521--33015701 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
33015511 CTCATTCAAT
* * *
33015521 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
33015584 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
33015600 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
33015664 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
33015681 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
33015702 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:33015661 original size:40 final size:40
Alignment explanation
Indices: 33015518--33015701 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
33015508 TAACTCATTC
* *
33015518 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
33015558 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
33015598 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
33015638 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
33015679 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
33015702 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:33016729 original size:13 final size:13
Alignment explanation
Indices: 33016711--33016735 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33016701 GGATGAGCAT
33016711 TTTTTTTTCTTTG
1 TTTTTTTTCTTTG
33016724 TTTTTTTTCTTT
1 TTTTTTTTCTTT
33016736 CTAGTTTCGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.08, G:0.04, T:0.88
Consensus pattern (13 bp):
TTTTTTTTCTTTG
Found at i:33023586 original size:20 final size:20
Alignment explanation
Indices: 33023542--33023588 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
33023532 TACACAGCTC
* *
33023542 AAAAGTACTATAAAACATAG
1 AAAAATACTATAAAACATAA
33023562 AAAAATACTATAAAACATAA
1 AAAAATACTATAAAACATAA
33023582 AAAAATA
1 AAAAATA
33023589 AATAAAGTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.68, C:0.09, G:0.04, T:0.19
Consensus pattern (20 bp):
AAAAATACTATAAAACATAA
Found at i:33023593 original size:19 final size:20
Alignment explanation
Indices: 33023551--33023594 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
33023541 CAAAAGTACT
* *
33023551 ATAAAACATAGAAAAATACT
1 ATAAAACATAAAAAAATACA
33023571 ATAAAACATAAAAAAATA-A
1 ATAAAACATAAAAAAATACA
33023590 ATAAA
1 ATAAA
33023595 GTAAGCTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.73, C:0.07, G:0.02, T:0.18
Consensus pattern (20 bp):
ATAAAACATAAAAAAATACA
Found at i:33027880 original size:94 final size:92
Alignment explanation
Indices: 33027627--33027889 Score: 250
Period size: 94 Copynumber: 2.8 Consensus size: 92
33027617 GTGCCAATAC
* * * * *
33027627 CATGTCCCAGACATGGTCTTACACTGGC-T-CATATCTCAAGTCGATGCCATTTCCCAAACATAG
1 CATGTCCCAGACAT-GTCTTACACTGGCTTACATATC-GAGGCCAATG-CATGTCCCAAACATA-
** * *
33027690 TCTTACACT-GACAATCATCTC-GTAGCCGATG
62 TCTTACACTAG-CTCTTATCTCAAT-GCCGATG
* * * *
33027721 CATGTCCCAGACATGTCTTACACTGGCTTACATATCGAGGCCGATGCATGTTCCAGACATGTCTT
1 CATGTCCCAGACATGTCTTACACTGGCTTACATATCGAGGCCAATGCATGTCCCAAACATATCTT
33027786 ACACTAGCTCTTATCTCAATGCCGATG
66 ACACTAGCTCTTATCTCAATGCCGATG
* *
33027813 CCATGTCCCAGACATGGTCTTATACTGGCTCT-CATAAT-GTGGCCAATGCATGTCCCAAACATA
1 -CATGTCCCAGACAT-GTCTTACACTGGCT-TACAT-ATCGAGGCCAATGCATGTCCCAAACATA
*
33027876 TCTTACACTGGCTC
62 TCTTACACTAGCTC
33027890 ACGCAAGTGA
Statistics
Matches: 143, Mismatches: 18, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
92 23 0.16
93 40 0.28
94 71 0.50
95 9 0.06
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (92 bp):
CATGTCCCAGACATGTCTTACACTGGCTTACATATCGAGGCCAATGCATGTCCCAAACATATCTT
ACACTAGCTCTTATCTCAATGCCGATG
Found at i:33027880 original size:140 final size:140
Alignment explanation
Indices: 33027627--33027888 Score: 348
Period size: 140 Copynumber: 1.9 Consensus size: 140
33027617 GTGCCAATAC
* * *
33027627 CATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGTCGATGCCATTTCCCAAACATAGTC
1 CATGTCCCAGACATGGTCTTACACTAGCTCATATCTCAAGCCGATGCCATGTCCCAAACATAGTC
* * * *
33027692 TTACACTGACAATCATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATATC
66 TTACACTGACAATCATATCGTAGCCAATGCATGTCCCAAACATATCTTACACTGGCTTACATATC
33027757 GAGGCCGATG
131 GAGGCCGATG
* * * *
33027767 CATGTTCCAGACAT-GTCTTACACTAGCTCTTATCTCAATGCCGATGCCATGTCCCAGACATGGT
1 CATGTCCCAGACATGGTCTTACACTAGCTCATATCTCAA-GCCGATGCCATGTCCCAAACATAGT
* * ** *
33027831 CTTATACTGGCTCTCATAAT-GTGGCCAATGCATGTCCCAAACATATCTTACACTGGCT
65 CTTACACTGACAATCAT-ATCGTAGCCAATGCATGTCCCAAACATATCTTACACTGGCT
33027889 CACGCAAGTG
Statistics
Matches: 104, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
139 22 0.21
140 81 0.78
141 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (140 bp):
CATGTCCCAGACATGGTCTTACACTAGCTCATATCTCAAGCCGATGCCATGTCCCAAACATAGTC
TTACACTGACAATCATATCGTAGCCAATGCATGTCCCAAACATATCTTACACTGGCTTACATATC
GAGGCCGATG
Found at i:33027889 original size:46 final size:46
Alignment explanation
Indices: 33027627--33027889 Score: 223
Period size: 46 Copynumber: 5.6 Consensus size: 46
33027617 GTGCCAATAC
* *
33027627 CATGTCCCAGACATGGTCTTACACTGG--CTCATATC-TCAAGTCGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTCTCATATCGT--GGCCGATG
* * * ** * *
33027673 CCATTTCCCAAACATAGTCTTACACTGACAATCATCTCGTAGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTCTCATATCGTGGCCGATG
*
33027721 CATGTCCCAGACATGTCTTACACTGGCT-TACATATCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCT-CATATCGTGGCCGATG
* * * * *
33027767 CATGTTCCAGACATGTCTTACACTAGCTCTTATCTCAAT-GCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTCATATC-GTGGCCGATG
* *
33027813 CCATGTCCCAGACATGGTCTTATACTGGCTCTCATAAT-GTGGCCAATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-ATCGTGGCCGATG
* *
33027861 CATGTCCCAAACATATCTTACACTGGCTC
1 CATGTCCCAGACATGTCTTACACTGGCTC
33027890 ACGCAAGTGA
Statistics
Matches: 176, Mismatches: 30, Indels: 21
0.78 0.13 0.09
Matches are distributed among these distances:
45 1 0.01
46 75 0.43
47 63 0.36
48 29 0.16
49 7 0.04
50 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGGCTCTCATATCGTGGCCGATG
Found at i:33030147 original size:30 final size:30
Alignment explanation
Indices: 33030111--33030171 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
33030101 CATTTAATAC
*
33030111 AAACTTTGGCAAAATTACATTTTTGCCCCT
1 AAACTTTGGCAAAATTACACTTTTGCCCCT
* *
33030141 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACACTTTTGCCCCT
33030171 A
1 A
33030172 GGCTCGGGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACACTTTTGCCCCT
Found at i:33041515 original size:47 final size:47
Alignment explanation
Indices: 33041450--33041805 Score: 316
Period size: 47 Copynumber: 7.6 Consensus size: 47
33041440 GTGCCAATGC
* * *
33041450 CATGTCCCAGACACGGTCTTACACTGGCTCAT-ATCTCA-AGTCAATG
1 CATGTCCCAGACATGGTCTTACACTGGCT-ATCATCTCATAGCCGATG
* * * * *
33041496 CCATGTTCTAGACATGGTCTTAAACTGACTATCATCTCATAGCTGATG
1 -CATGTCCCAGACATGGTCTTACACTGGCTATCATCTCATAGCCGATG
*
33041544 CATGTCCCAGACATGGTCTTACACTGACTATCATCTCATAGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTATCATCTCATAGCCGATG
* **
33041591 CATGTCCTAGACATGGTCTTACACTTACTATCATCTCATAGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTATCATCTCATAGCCGATG
* * * *
33041638 CATGTCCTAGACAT-GTCTTACACTGGCTTAT-GTCTCGA-GGTCGATG
1 CATGTCCCAGACATGGTCTTACACTGGC-TATCATCTC-ATAGCCGATG
* * * *
33041684 CATGTCCCAGACAT-GTCTTACACTAGATCTCGTCTCA-ATGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTATCATCTCATA-GCCGATG
* * * * * * * **
33041730 CCATGTACCAAACATGGTCTTATACTGGCTCTCATAAT-GTGGTTGATG
1 -CATGTCCCAGACATGGTCTTACACTGGCTATCAT-CTCATAGCCGATG
*
33041778 CATGTCCCACACAT-GTCTTACACTGGCT
1 CATGTCCCAGACATGGTCTTACACTGGCT
33041806 CGCGCAAGTG
Statistics
Matches: 260, Mismatches: 39, Indels: 21
0.81 0.12 0.07
Matches are distributed among these distances:
45 3 0.01
46 71 0.27
47 160 0.62
48 25 0.10
49 1 0.00
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.30
Consensus pattern (47 bp):
CATGTCCCAGACATGGTCTTACACTGGCTATCATCTCATAGCCGATG
Found at i:33041611 original size:94 final size:92
Alignment explanation
Indices: 33041450--33041759 Score: 358
Period size: 94 Copynumber: 3.3 Consensus size: 92
33041440 GTGCCAATGC
* * *
33041450 CATGTCCCAGACACGGTCTTACACTGGCTCATATCTCAAGTCAATGCCATGTTCTAGACATGGTC
1 CATGTCCCAGACATGGTCTTACACTGGCT-ATATCTCAAGTCGATG-CATGTCCTAGACATGGTC
* *
33041515 TTAAACTGACTATCATCTCATAGCTGATG
64 TTACACTGACTATCATCTCATAGCCGATG
* *
33041544 CATGTCCCAGACATGGTCTTACACTGACTATCATCTCATAGCCGATGCATGTCCTAGACATGGTC
1 CATGTCCCAGACATGGTCTTACACTGGCTAT-ATCTCA-AGTCGATGCATGTCCTAGACATGGTC
*
33041609 TTACACTTACTATCATCTCATAGCCGATG
64 TTACACTGACTATCATCTCATAGCCGATG
* * * *
33041638 CATGTCCTAGACAT-GTCTTACACTGGCTTATGTCTCGAGGTCGATGCATGTCCCAGACAT-GTC
1 CATGTCCCAGACATGGTCTTACACTGGC-TATATCTC-AAGTCGATGCATGTCCTAGACATGGTC
* *
33041701 TTACACTAGA-TCTCGTCTCA-ATGCCGATG
64 TTACACT-GACTATCATCTCATA-GCCGATG
* * *
33041730 CCATGTACCAAACATGGTCTTATACTGGCT
1 -CATGTCCCAGACATGGTCTTACACTGGCT
33041760 CTCATAATGT
Statistics
Matches: 187, Mismatches: 21, Indels: 17
0.83 0.09 0.08
Matches are distributed among these distances:
91 1 0.01
92 25 0.13
93 50 0.27
94 105 0.56
95 6 0.03
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (92 bp):
CATGTCCCAGACATGGTCTTACACTGGCTATATCTCAAGTCGATGCATGTCCTAGACATGGTCTT
ACACTGACTATCATCTCATAGCCGATG
Found at i:33041778 original size:140 final size:140
Alignment explanation
Indices: 33041540--33041805 Score: 326
Period size: 140 Copynumber: 1.9 Consensus size: 140
33041530 TCTCATAGCT
*
33041540 GATGCATGTCCCAGACATGGTCTTACACTGACTATCATCTCATAGCCGATGCATGTCCTAGACAT
1 GATGCATGTCCCAGACATGGTCTTACACTGACTATCATCTCATAGCCGATGCATGTCCTAAACAT
* * * *
33041605 GGTCTTACACTTACTATCATCTCATAGCCGATGCATGTCCTAGACATGTCTTACACTGGCTTATG
66 GGTCTTACACTGACTATCATATCATAGCCGATGCATGTCCCACACATGTCTTACACTGGCTTATG
33041670 TCTCGAGGTC
131 TCTCGAGGTC
* *
33041680 GATGCATGTCCCAGACAT-GTCTTACACTAGA-TCTCGTCTCA-ATGCCGATGCCATGTACC-AA
1 GATGCATGTCCCAGACATGGTCTTACACT-GACTATCATCTCATA-GCCGATG-CATGT-CCTAA
* * * * * **
33041741 ACATGGTCTTATACTGGCTCTCATAAT-GTGGTTGATGCATGTCCCACACATGTCTTACACTGGC
62 ACATGGTCTTACACTGACTATCAT-ATCATAGCCGATGCATGTCCCACACATGTCTTACACTGGC
33041805 T
126 T
33041806 CGCGCAAGTG
Statistics
Matches: 107, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
138 1 0.01
139 25 0.23
140 78 0.73
141 3 0.03
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (140 bp):
GATGCATGTCCCAGACATGGTCTTACACTGACTATCATCTCATAGCCGATGCATGTCCTAAACAT
GGTCTTACACTGACTATCATATCATAGCCGATGCATGTCCCACACATGTCTTACACTGGCTTATG
TCTCGAGGTC
Found at i:33048183 original size:93 final size:93
Alignment explanation
Indices: 33048024--33048192 Score: 234
Period size: 93 Copynumber: 1.8 Consensus size: 93
33048014 GGATGGTTGA
* *
33048024 GCATCCGAACTAGTTGAGTTGAGTCCGAGTTCACTTACAGATGCGAATGTTCGAACTCTTTGAGT
1 GCATCCGAACTAGTTGAGTTGAGTCCGAGTTCACTTACAGATGCGAACGCTCGAACTCTTTGAGT
33048089 TGAGTCCGAGTTCGTAAGATGTAACTAG
66 TGAGTCCGAGTTCGTAAGATGTAACTAG
* * ** *
33048117 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGC-CTGAGCT-TGTTGA
1 GCATCCGAACTAGTTGAGTTGAGTCCGAGTTCACTTACAGATGCGAACGCTC-GAACTCT-TTGA
*
33048180 GTTGAGTCTGAGT
64 GTTGAGTCCGAGT
33048193 ACACTTAGGG
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
92 2 0.03
93 64 0.97
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (93 bp):
GCATCCGAACTAGTTGAGTTGAGTCCGAGTTCACTTACAGATGCGAACGCTCGAACTCTTTGAGT
TGAGTCCGAGTTCGTAAGATGTAACTAG
Found at i:33055340 original size:93 final size:93
Alignment explanation
Indices: 33055181--33055351 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
33055171 TGTAACCCGC
* *
33055181 CCATAAGTGAACTTGGACTCAACTCAACGAGCTCAGATGCCTAGTTACATCTCTCAAACTCGGAC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGATGCCTAGTTACATCTCACAAACTCGGAC
33055246 TCAACTCAACGAGCTTGGGCGTTCGCAT
66 TCAACTCAACGAGCTTGGGCGTTCGCAT
* * * *
33055274 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCACGAACTCGGAC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGATGCCTAGTTACATCTCACAAACTCGGAC
33055339 TCAACTCAACGAG
66 TCAACTCAACGAG
33055352 TTCGGATGCT
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (93 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGATGCCTAGTTACATCTCACAAACTCGGAC
TCAACTCAACGAGCTTGGGCGTTCGCAT
Found at i:33055350 original size:47 final size:47
Alignment explanation
Indices: 33055189--33055360 Score: 167
Period size: 47 Copynumber: 3.7 Consensus size: 47
33055179 GCCCATAAGT
* * * * *
33055189 GAACTTGGACTCAACTCAACGAGCTCAGATGCCTAGTTACATCTCTC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATATCAC
* * * *
33055236 AAACTCGGACTCAACTCAACGAGCTT-GG--G-C--GTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAG-TTCGGATGCCTAGTT-ACAT--ATCA-C
*
33055282 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATATCAC
33055329 GAACTCGGACTCAACTCAACGAGTTCGGATGC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC
33055361 TCAACCATCC
Statistics
Matches: 100, Mismatches: 14, Indels: 22
0.74 0.10 0.16
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 1 0.01
45 4 0.04
46 24 0.24
47 54 0.54
48 4 0.04
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATATCAC
Found at i:33058493 original size:93 final size:93
Alignment explanation
Indices: 33058334--33058504 Score: 254
Period size: 93 Copynumber: 1.8 Consensus size: 93
33058324 GGATGGTTGA
* **
33058334 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGACGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGCTGAGTTGAGTCCGAGTTCACTTACGGACGCGAATGCCCGAACTCGTTGAGT
33058399 TGAG-TCTGAGTTCGTGAGATGTAACTAG
66 TGAGTTC-GAGTTCGTGAGATGTAACTAG
* * * * *
33058427 GCATCCGAACTCGCTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATGCCCGAGCTTGTTGAGT
1 GCATCCGAACTCGCTGAGTTGAGTCCGAGTTCACTTACGGACGCGAATGCCCGAACTCGTTGAGT
33058492 TGAGTTCGAGTTC
66 TGAGTTCGAGTTC
33058505 ACTTAGGGGC
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
93 67 0.97
94 2 0.03
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGCTGAGTTGAGTCCGAGTTCACTTACGGACGCGAATGCCCGAACTCGTTGAGT
TGAGTTCGAGTTCGTGAGATGTAACTAG
Found at i:33067826 original size:47 final size:47
Alignment explanation
Indices: 33067772--33068311 Score: 870
Period size: 47 Copynumber: 11.5 Consensus size: 47
33067762 TGAATAAATA
* *
33067772 TGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATG
33067819 TGAAAGTGTATATATGTGATAAGGCC-AATGGCCGATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATG
* *
33067865 TGAAAGTGTATATATGTGATATGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATG
*
33067912 TGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATG
* * *
33067959 TGAAAGTGTATATATATGTGATAAGGCCTAATAGCTGATGTGATGAATG
1 TGAAAGTG--TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATG
*
33068008 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATG
*
33068055 TGAAAGTGTATATATGTGACAAGGCCGAATGGCCGATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATG
* *
33068102 TAAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATG
*
33068149 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATG
*
33068196 TGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATG
* * *
33068243 TGAAAGTGTATATATGTGAT-AGTGCCGAGTGGCC-ACGTGATGGATG
1 TGAAAGTGTATATATGTGATAAG-GCCGAATGGCCGATGTGATGAATG
*
33068289 TGAAAGTGTATAAATGTGATAAG
1 TGAAAGTGTATATATGTGATAAG
33068312 TCCCGAAGGG
Statistics
Matches: 463, Mismatches: 25, Indels: 10
0.93 0.05 0.02
Matches are distributed among these distances:
46 75 0.16
47 345 0.75
49 43 0.09
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
TGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATG
Found at i:33069838 original size:40 final size:40
Alignment explanation
Indices: 33069722--33070035 Score: 517
Period size: 40 Copynumber: 7.9 Consensus size: 40
33069712 GAATGAGAGA
*
33069722 GATGTATCTGGGCTAAGT-CCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
33069761 GATGTATCCGGGCTAAGTCCCG-AGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
33069800 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
33069840 GATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
33069880 GATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
33069920 GATGTATCCGGGCTAAGTCCCGAAGAGCACTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
33069960 GATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * **
33070000 GATATATCCGTGCTAAACCCCGAAG-GCATTCGTGCT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
33070036 TGGACAAAAA
Statistics
Matches: 260, Mismatches: 13, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
39 67 0.26
40 193 0.74
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:33070914 original size:79 final size:80
Alignment explanation
Indices: 33070819--33070999 Score: 210
Period size: 79 Copynumber: 2.3 Consensus size: 80
33070809 ACCATTCAAT
* * **
33070819 GCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACGAATGCCTTCGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATAACTTCGGATCTTAACCCGGATA-
*
33070881 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
33070897 GGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAATAACTTCGGATCTTAGTCCGGATAT
1 -GCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAATAACTTCGGATCTTAACCCGGATAT
33070962 AGTCACTTAGCACAAA
65 AGTCACTTAGCACAAA
*
33070978 GCGCTTCGGGACTTAGCCCGGA
1 GC-CTTCGGGACTTAACCCGGA
33071000 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 8, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
78 4 0.05
79 40 0.45
80 15 0.17
81 28 0.32
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAATAACTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:33070945 original size:40 final size:40
Alignment explanation
Indices: 33070816--33070937 Score: 176
Period size: 40 Copynumber: 3.1 Consensus size: 40
33070806 TTAACCATTC
* *
33070816 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
33070856 AATGCCTTC-GGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
33070895 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
33070935 AAT
1 AAT
33070938 AACTTCGGAT
Statistics
Matches: 72, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
38 3 0.04
39 30 0.42
40 39 0.54
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:33070958 original size:40 final size:39
Alignment explanation
Indices: 33070816--33070951 Score: 166
Period size: 40 Copynumber: 3.4 Consensus size: 39
33070806 TTAACCATTC
* *
33070816 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTC-GGACTTAACCCGGA-ATTAATAACTCGCACA
* *
33070856 AATGCCTTCGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGACTTAACCCGGAATTAATAACTCGCACA
*
33070895 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTC-GGACTTAACCCGGAATTAATAACTCGCACA
**
33070935 AATAACTTCGGATCTTA
1 AATGCCTTCGGA-CTTA
33070952 GTCCGGATAT
Statistics
Matches: 83, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
38 3 0.04
39 33 0.40
40 47 0.57
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:33078765 original size:80 final size:80
Alignment explanation
Indices: 33078654--33078834 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
33078644 CTCATTCAAT
* * *
33078654 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
33078717 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
33078733 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
33078797 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
33078814 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
33078835 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:33078794 original size:40 final size:40
Alignment explanation
Indices: 33078651--33078834 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
33078641 TAACTCATTC
* *
33078651 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
33078691 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
33078731 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
33078771 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
33078812 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
33078835 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:33085661 original size:27 final size:26
Alignment explanation
Indices: 33085617--33085668 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
33085607 CTCGCTGCAA
*
33085617 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
33085644 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
33085669 GCAGCCTCGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:33085733 original size:33 final size:32
Alignment explanation
Indices: 33085684--33085747 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
33085674 CTCGTTGCAA
* *
33085684 TCTGGTGGCTTCGCCACATATATATATATCTGT
1 TCTGGTGGCCTAGCCACA-ATATATATATCTGT
* *
33085717 TCTGGTGGCCTAGCCACAATATCTGTATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
33085748 GTGATTTTGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:33086977 original size:6 final size:6
Alignment explanation
Indices: 33086950--33086995 Score: 56
Period size: 6 Copynumber: 7.3 Consensus size: 6
33086940 TTTTGAAGAC
* *
33086950 TTTTAT TTATTAT TTATTAT TTTTAT TTTTAC TTTTAT CTTTAT TT
1 TTTTAT TT-TTAT TT-TTAT TTTTAT TTTTAT TTTTAT TTTTAT TT
33086996 ATCTTTTTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
6 22 0.63
7 13 0.37
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (6 bp):
TTTTAT
Found at i:33093076 original size:47 final size:47
Alignment explanation
Indices: 33093018--33093193 Score: 158
Period size: 47 Copynumber: 3.6 Consensus size: 47
33093008 GCATTAGCAC
*
33093018 TAAGACAAGGATACCATGTAAGACCTTGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* * *** *
33093065 TAAGATAAGGATATCATGTAAGACCATGCCAAGG--CATGGCATTGATAAGTTCTA
1 TAAGACAAGGATACCATGTAAGACCATG-TTTGGAACATGGCATT--T--G----G
* *
33093119 TAAGACAAGGATACCATGTAAGGCCATGTTTGGAACATGGCATTTCG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
33093166 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
33093194 CCAAGGCATG
Statistics
Matches: 100, Mismatches: 18, Indels: 22
0.71 0.13 0.16
Matches are distributed among these distances:
46 9 0.09
47 50 0.50
48 3 0.03
50 1 0.01
53 3 0.03
54 25 0.25
55 9 0.09
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:33093149 original size:101 final size:101
Alignment explanation
Indices: 33093018--33093460 Score: 419
Period size: 101 Copynumber: 4.3 Consensus size: 101
33093008 GCATTAGCAC
*
33093018 TAAGACAAGGATACCATGTAAGACCTTGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
33093083 TAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
66 TAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
* *
33093119 TAAGACAAGGATACCATGTAAGGCCATGTTTGGAACATGGCATTTCGTAAGATAAGGATATCATG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
*
33093184 TAAGACCATGCCAAGGCATGGCATTGATCAGTTCTA
66 TAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
* * * ** ** *
33093220 TAAGGCAAGGAAATCATGTAAGACCATG--TCAATACATGGCATTGATGAGTTATTATAAGGTAA
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGA-ACATGGCATT--TG-G-TAAGATAAGG-AT
*** * *
33093283 AGGTCCCATAAGACCATGCCAAGGCATGGCATTGGTGAGTT-TA
60 A--TCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
* * *** ** *
33093326 TAAGGCAAGGATACCATGTAAGACCGTGTCAAG-ACATGGCATTGATGAGTTACTATAAGGCAAA
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATT--TG-G-TAAGATAAGG-ATA
* * * *
33093390 GGTCCCATGTAAGACCATGCTAAGGCATGGCATTGGTGAGCTC-A
61 --T--CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
* *
33093434 TCAGGCAAGGATACCATGTAAGACCAT
1 TAAGACAAGGATACCATGTAAGACCAT
33093461 TTCAAGACAT
Statistics
Matches: 295, Mismatches: 34, Indels: 19
0.85 0.10 0.05
Matches are distributed among these distances:
99 2 0.01
100 10 0.03
101 121 0.41
102 1 0.00
103 1 0.00
104 8 0.03
105 2 0.01
106 59 0.20
107 33 0.11
108 58 0.20
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.25
Consensus pattern (101 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
TAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
Found at i:33093311 original size:53 final size:53
Alignment explanation
Indices: 33093183--33093474 Score: 261
Period size: 53 Copynumber: 5.5 Consensus size: 53
33093173 AGGATATCAT
* * ***
33093183 GTAAGACCATGCCAAGGCATGGCATTGATCAGTTCTATAAGGCAAGGAAATCA
1 GTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGAAAGGATCCCA
* ** *
33093236 TGTAAGACCATGTCAATACATGGCATTGATGAGTTATTATAAGGTAAAGG-TCCCA
1 -GTAAGACCATGCCAAGGCATGGCATTGATGAGTT-CTATAAGG-AAAGGATCCCA
* * *
33093291 -TAAGACCATGCCAAGGCATGGCATTGGTGAGTT-TATAAGGCAAGGATACCA
1 GTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGAAAGGATCCCA
* * *
33093342 TGTAAGACCGTGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGG-TCCCA
1 -GTAAGACCATGCCAAGGCATGGCATTGATGAGTT-CTATAAGG-AAAGGATCCCA
* * * * * *
33093397 TGTAAGACCATGCTAAGGCATGGCATTGGTGAGCTC-ATCAGGCAAGGATACCA
1 -GTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGAAAGGATCCCA
** *
33093450 TGTAAGACCATTTCAAGACATGGCA
1 -GTAAGACCATGCCAAGGCATGGCA
33093475 ATGGTAAGTT
Statistics
Matches: 195, Mismatches: 34, Indels: 19
0.79 0.14 0.08
Matches are distributed among these distances:
50 4 0.02
51 11 0.06
52 4 0.02
53 88 0.45
54 31 0.16
55 49 0.25
56 8 0.04
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (53 bp):
GTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGAAAGGATCCCA
Found at i:33093456 original size:108 final size:108
Alignment explanation
Indices: 33093180--33093474 Score: 450
Period size: 108 Copynumber: 2.7 Consensus size: 108
33093170 ATAAGGATAT
* * * *
33093180 CATGTAAGACCATGCCAAGGCATGGCATTGATCAGTTCTATAAGGCAAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATACCATGTAAGACC
* * *
33093245 ATGTCAATACATGGCATTGATGAGTTATTATAAGGTAAAGGTCC
65 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
* *
33093289 CA--TAAGACCATGCCAAGGCATGGCATTGGTGAGTTTATAAGGCAAGGATACCATGTAAGACCG
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
33093352 TGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
66 TGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
* * *
33093395 CATGTAAGACCATGCTAAGGCATGGCATTGGTGAGCTCATCAGGCAAGGATACCATGTAAGACCA
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
*
33093460 TTTCAAGACATGGCA
66 TGTCAAGACATGGCA
33093475 ATGGTAAGTT
Statistics
Matches: 169, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
106 66 0.39
107 31 0.18
108 70 0.41
109 2 0.01
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (108 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
TGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
Found at i:33093458 original size:161 final size:159
Alignment explanation
Indices: 33093172--33093484 Score: 346
Period size: 161 Copynumber: 1.9 Consensus size: 159
33093162 TTCGTAAGAT
* * *
33093172 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATCAGTTCTATAAGGCAAGGAAATCAT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATCAGTTCTATAAGGCAAGGAAACCAT
* * *
33093237 GTAAGACCATGTCAATACATGGCATTGATGAGTTATTATAAGGTAAAGGTCCCATAAGACCATGC
66 GTAAGACCATGTCAAGACATGGCATTGATGAG-TATCATAAGGTAAAGGTACCATAAGACCATGC
* * *
33093302 CAAGGCATGGCATTGGTGAGTTTATAAGGC
130 CAAGACATGGCAATGGTAAGTTTATAAGGC
* * * **
33093332 AAGGATACCATGTAAGACCGTGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGG-TCCC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATCAGTT-CTATAAGGC-AAGGAAACC
* * * * *
33093396 ATGTAAGACCATG-CTAAGGCATGGCATTGGTGAG-CTCATCAGG-CAAGGATACCATGTAAGAC
64 ATGTAAGACCATGTC-AAGACATGGCATTGATGAGTATCATAAGGTAAAGG-TACCA--TAAGAC
**
33093458 CATTTCAAGACATGGCAATGGTAAGTT
125 CATGCCAAGACATGGCAATGGTAAGTT
33093485 CAAAAAAGAA
Statistics
Matches: 126, Mismatches: 21, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
158 4 0.03
159 10 0.08
160 41 0.33
161 67 0.53
162 4 0.03
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (159 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATCAGTTCTATAAGGCAAGGAAACCAT
GTAAGACCATGTCAAGACATGGCATTGATGAGTATCATAAGGTAAAGGTACCATAAGACCATGCC
AAGACATGGCAATGGTAAGTTTATAAGGC
Found at i:33093504 original size:108 final size:107
Alignment explanation
Indices: 33093180--33093509 Score: 414
Period size: 108 Copynumber: 3.1 Consensus size: 107
33093170 ATAAGGATAT
* * * *
33093180 CATGTAAGACCATGCCAAGGCATGGCATTGATCAGTTCTATAAGGCAAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATACCATGTAAGACC
* *
33093245 ATGTCAATACATGGCATTGATGAGTT-ATTATAAGGTAAAGGTCC
65 ATGTCAAGACATGGCATTGATGAGTTCA--ATAAGGAAAAGGTCC
* *
33093289 CA--TAAGACCATGCCAAGGCATGGCATTGGTGAGTTTATAAGGCAAGGATACCATGTAAGACCG
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
* *
33093352 TGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
66 TGTCAAGACATGGCATTGATGAGTT-CAATAAGGAAAAGGTCC
* * *
33093395 CATGTAAGACCATGCTAAGGCATGGCATTGGTGAGCTCATCAGGCAAGGATACCATGTAAGACCA
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
* * * * * *
33093460 TTTCAAGACATGGCAATGGTAAGTTCAAAAAAGAAAAGGTTCC
66 TGTCAAGACATGGCATTGATGAGTTCAATAAGGAAAAGG-TCC
*
33093503 CAAGTAA
1 CATGTAA
33093510 TTCAAAGAGT
Statistics
Matches: 193, Mismatches: 23, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
106 64 0.33
107 41 0.21
108 86 0.45
109 2 0.01
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (107 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
TGTCAAGACATGGCATTGATGAGTTCAATAAGGAAAAGGTCC
Found at i:33098978 original size:27 final size:27
Alignment explanation
Indices: 33098948--33098999 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
33098938 AGATACAAAA
33098948 CAGAT-ATATGTGGCAGAGCCACCAGAT
1 CAGATAAT-TGTGGCAGAGCCACCAGAT
*
33098975 CAGATAATTGTGGCATAGCCACCAG
1 CAGATAATTGTGGCAGAGCCACCAG
33099000 GACGCTTCCT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 21 0.91
28 2 0.09
ACGTcount: A:0.33, C:0.23, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATAATTGTGGCAGAGCCACCAGAT
Found at i:33102550 original size:56 final size:56
Alignment explanation
Indices: 33102478--33102585 Score: 198
Period size: 56 Copynumber: 1.9 Consensus size: 56
33102468 TCACCTATAC
33102478 CAGAATCACATATCGATGCCAACATATTAAACATGGTCTTACTCGCACACATTTAT
1 CAGAATCACATATCGATGCCAACATATTAAACATGGTCTTACTCGCACACATTTAT
* *
33102534 CAGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACAT
1 CAGAATCACATATCGATGCCAACATATTAAACATGGTCTTACTCGCACACAT
33102586 ATATTGATGC
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 50 1.00
ACGTcount: A:0.34, C:0.26, G:0.13, T:0.27
Consensus pattern (56 bp):
CAGAATCACATATCGATGCCAACATATTAAACATGGTCTTACTCGCACACATTTAT
Found at i:33103294 original size:45 final size:45
Alignment explanation
Indices: 33103230--33103320 Score: 164
Period size: 45 Copynumber: 2.0 Consensus size: 45
33103220 AAACATGCCT
33103230 TTCATAATTCATCATCTAACTCCACAAAGCTCAATTATTCATCAA
1 TTCATAATTCATCATCTAACTCCACAAAGCTCAATTATTCATCAA
* *
33103275 TTCATAATTCATCGTCTAACTTCACAAAGCTCAATTATTCATCAA
1 TTCATAATTCATCATCTAACTCCACAAAGCTCAATTATTCATCAA
33103320 T
1 T
33103321 GGCATAACTC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.36, C:0.25, G:0.03, T:0.35
Consensus pattern (45 bp):
TTCATAATTCATCATCTAACTCCACAAAGCTCAATTATTCATCAA
Found at i:33109716 original size:25 final size:26
Alignment explanation
Indices: 33109688--33109782 Score: 151
Period size: 25 Copynumber: 3.8 Consensus size: 26
33109678 CTCTTTTAAT
*
33109688 AACTGGGGCAAAGCCCTTTTT-GATA
1 AACTGGGGCAAAGCCCTTTTTCGGTA
33109713 AACTGGGGCAAA-CCCTTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTTCGGTA
33109738 AACTGGGGCAAAG-CCTTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTTCGGTA
*
33109763 AACTGGGGCAAAACCCTTTT
1 AACTGGGGCAAAGCCCTTTT
33109783 AGTACTTCCT
Statistics
Matches: 65, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
24 8 0.12
25 51 0.78
26 6 0.09
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.27
Consensus pattern (26 bp):
AACTGGGGCAAAGCCCTTTTTCGGTA
Found at i:33110023 original size:27 final size:27
Alignment explanation
Indices: 33109985--33110072 Score: 106
Period size: 27 Copynumber: 3.3 Consensus size: 27
33109975 GGGGCAAAAT
* * *
33109985 GGTAATGT-TACCCCACAAGGGTATCTC
1 GGTAAT-TCTACCCTACAGGGGTATTTC
* *
33110012 GGTAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
33110039 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
33110066 GGTAATT
1 GGTAATT
33110073 TTACAAGCCA
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
26 1 0.02
27 50 0.98
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:33110169 original size:27 final size:27
Alignment explanation
Indices: 33110028--33110157 Score: 172
Period size: 27 Copynumber: 4.8 Consensus size: 27
33110018 TCTACCCTAT
* * **
33110028 AGGGGTATTTTAGTAATTCTACCCTA-C
1 AGGGGTATTTTGGTAATTTTA-CAAACC
* *
33110055 AGGGGTATTTCGGTAATTTTACAAGCC
1 AGGGGTATTTTGGTAATTTTACAAACC
*
33110082 AGAGGTATTTTGGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
*
33110109 AGGGGTATTTTAGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
33110136 AGGGGTATTTTGGTAATTTTAC
1 AGGGGTATTTTGGTAATTTTAC
33110158 TAATCGAGGG
Statistics
Matches: 90, Mismatches: 12, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
26 1 0.01
27 89 0.99
ACGTcount: A:0.28, C:0.12, G:0.22, T:0.38
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACC
Found at i:33110178 original size:81 final size:81
Alignment explanation
Indices: 33110028--33110180 Score: 184
Period size: 81 Copynumber: 1.9 Consensus size: 81
33110018 TCTACCCTAT
** ****
33110028 AGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGGTAATTTTACAAGCCAGAGGTATTTT
1 AGGGGTATTTTAGTAATTCTACCAAACAGGGGTATTTCGGTAATTTTACAAGCCAGAGGTAAAAC
33110093 GGTAATTTTACAAACC
66 GGTAATTTTACAAACC
* * * *
33110109 AGGGGTATTTTAGTAATTTTA-CAAACCAGGGGTATTTTGGTAATTTTACTAATCGAG-GGTAAA
1 AGGGGTATTTTAGTAATTCTACCAAA-CAGGGGTATTTCGGTAATTTTAC-AAGCCAGAGGTAAA
33110172 ACGGTAATT
64 ACGGTAATT
33110181 CTGTAAATTG
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
80 2 0.03
81 53 0.88
82 5 0.08
ACGTcount: A:0.30, C:0.12, G:0.22, T:0.36
Consensus pattern (81 bp):
AGGGGTATTTTAGTAATTCTACCAAACAGGGGTATTTCGGTAATTTTACAAGCCAGAGGTAAAAC
GGTAATTTTACAAACC
Found at i:33110179 original size:54 final size:54
Alignment explanation
Indices: 33110065--33110180 Score: 135
Period size: 54 Copynumber: 2.1 Consensus size: 54
33110055 AGGGGTATTT
* ***
33110065 CGGTAATTTTACAAGCCAGAGGTATTTTGGTAATTTTACAAACCAGGGGTATTT
1 CGGTAATTTTACAAACCAGAGGTATTTTGGTAATTTTACAAACCAGGGGTAAAA
** * * *
33110119 TAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACTAATC-GAGGGTAAAA
1 CGGTAATTTTACAAACCAGAGGTATTTTGGTAATTTTACAAACCAG-GGGTAAAA
33110173 CGGTAATT
1 CGGTAATT
33110181 CTGTAAATTG
Statistics
Matches: 50, Mismatches: 11, Indels: 2
0.79 0.17 0.03
Matches are distributed among these distances:
53 1 0.02
54 49 0.98
ACGTcount: A:0.32, C:0.11, G:0.22, T:0.35
Consensus pattern (54 bp):
CGGTAATTTTACAAACCAGAGGTATTTTGGTAATTTTACAAACCAGGGGTAAAA
Found at i:33110196 original size:54 final size:54
Alignment explanation
Indices: 33110138--33110275 Score: 154
Period size: 54 Copynumber: 2.6 Consensus size: 54
33110128 TACAAACCAG
* * *
33110138 GGGTATTTTGGTAATTTTACTAATCGAGGGTAAAACGGTAATTCTGTAAATTGA
1 GGGTAATTTGGTAATTTTACTAATCGAGGGTAAAACGGTAATTCTATAAATCGA
** * *
33110192 GGGTAAAACT-ATAATTCTA-TAAATCGAGGGTAAAACGGTAATTCTATAAATCGA
1 GGGT-AATTTGGTAATTTTACT-AATCGAGGGTAAAACGGTAATTCTATAAATCGA
* * *
33110246 GGGTACTTTGGTAATTTTACAAATTGAGGG
1 GGGTAATTTGGTAATTTTACTAATCGAGGG
33110276 CATTTCAGTA
Statistics
Matches: 66, Mismatches: 14, Indels: 8
0.75 0.16 0.09
Matches are distributed among these distances:
53 3 0.05
54 61 0.92
55 2 0.03
ACGTcount: A:0.35, C:0.09, G:0.23, T:0.33
Consensus pattern (54 bp):
GGGTAATTTGGTAATTTTACTAATCGAGGGTAAAACGGTAATTCTATAAATCGA
Found at i:33110261 original size:27 final size:27
Alignment explanation
Indices: 33110159--33110250 Score: 148
Period size: 27 Copynumber: 3.4 Consensus size: 27
33110149 TAATTTTACT
*
33110159 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* **
33110186 AATTGAGGGTAAAACTATAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
33110213 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
33110240 AATCGAGGGTA
1 AATCGAGGGTA
33110251 CTTTGGTAAT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTATA
Found at i:33110269 original size:27 final size:27
Alignment explanation
Indices: 33110057--33110275 Score: 106
Period size: 27 Copynumber: 8.1 Consensus size: 27
33110047 TACCCTACAG
* *
33110057 GGGT-ATTTCGGTAATTTTAC-AAGCCA
1 GGGTAATTT-GGTAATTTTACAAATCGA
* *
33110083 GAGGTATTTTGGTAATTTTACAAA-CCA
1 G-GGTAATTTGGTAATTTTACAAATCGA
* * *
33110110 GGGGTATTTTAGTAATTTTACAAA-CCA
1 -GGGTAATTTGGTAATTTTACAAATCGA
* *
33110137 GGGGTATTTTGGTAATTTTACTAATCGA
1 -GGGTAATTTGGTAATTTTACAAATCGA
*** * ** *
33110165 GGGTAAAACGGTAATTCTGTAAATTGA
1 GGGTAATTTGGTAATTTTACAAATCGA
** * * *
33110192 GGGTAAAACT-ATAATTCTATAAATCGA
1 GGGT-AATTTGGTAATTTTACAAATCGA
*** * *
33110219 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTAATTTGGTAATTTTACAAATCGA
* *
33110246 GGGTACTTTGGTAATTTTACAAATTGA
1 GGGTAATTTGGTAATTTTACAAATCGA
33110273 GGG
1 GGG
33110276 CATTTCAGTA
Statistics
Matches: 157, Mismatches: 29, Indels: 13
0.79 0.15 0.07
Matches are distributed among these distances:
26 4 0.03
27 142 0.90
28 11 0.07
ACGTcount: A:0.33, C:0.10, G:0.22, T:0.34
Consensus pattern (27 bp):
GGGTAATTTGGTAATTTTACAAATCGA
Found at i:33117411 original size:20 final size:20
Alignment explanation
Indices: 33117386--33117431 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
33117376 ATTGGGTCAT
33117386 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
33117406 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
33117425 GCCCATA
1 GCCCATA
33117432 ACAAAACAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:33117440 original size:19 final size:20
Alignment explanation
Indices: 33117398--33117441 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
33117388 CCATATTAAC
** *
33117398 ACAGTTGGGCCCATTTCAAT
1 ACAGTTGGGCCCATAACAAA
33117418 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCATAACAAA
33117437 ACAGT
1 ACAGT
33117442 CTCATATGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (20 bp):
ACAGTTGGGCCCATAACAAA
Found at i:33120521 original size:16 final size:15
Alignment explanation
Indices: 33120499--33120540 Score: 52
Period size: 13 Copynumber: 2.9 Consensus size: 15
33120489 ATATTAGGGA
33120499 TTAAATTGAGAAAAG
1 TTAAATTGAGAAAAG
*
33120514 TGTAAATTGAG--GAG
1 T-TAAATTGAGAAAAG
33120528 TTAAATTGAGAAA
1 TTAAATTGAGAAA
33120541 TAAATAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 6
0.73 0.07 0.20
Matches are distributed among these distances:
13 9 0.41
14 3 0.14
15 1 0.05
16 9 0.41
ACGTcount: A:0.48, C:0.00, G:0.24, T:0.29
Consensus pattern (15 bp):
TTAAATTGAGAAAAG
Found at i:33121155 original size:47 final size:47
Alignment explanation
Indices: 33121086--33121215 Score: 172
Period size: 47 Copynumber: 2.8 Consensus size: 47
33121076 GTGCGAATAA
* * *** *
33121086 TACCTTGATTTGGCTACAGGCCATGATATAGGTA-TTTTGAGATGAGC
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCAG-GATAAGC
*
33121133 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCAGGATAAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCAGGATAAGC
*
33121180 TACCTTGATTTGGCTACGGGCAATGGTATAGGTACT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
33121216 TATCGATTGT
Statistics
Matches: 74, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
47 72 0.97
48 2 0.03
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCAGGATAAGC
Found at i:33128780 original size:30 final size:30
Alignment explanation
Indices: 33128744--33128811 Score: 118
Period size: 30 Copynumber: 2.3 Consensus size: 30
33128734 CACACGGGTA
* *
33128744 GACACACGTGCGTTTGTCTAGGCCGTGTGT
1 GACACACGTGCGTGTGTCTAGGCCGCGTGT
33128774 GACACACGTGCGTGTGTCTAGGCCGCGTGT
1 GACACACGTGCGTGTGTCTAGGCCGCGTGT
33128804 GACACACG
1 GACACACG
33128812 GATTGTGTGA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.16, C:0.26, G:0.34, T:0.24
Consensus pattern (30 bp):
GACACACGTGCGTGTGTCTAGGCCGCGTGT
Found at i:33130697 original size:27 final size:27
Alignment explanation
Indices: 33130666--33130843 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
33130656 TAAATTGTAC
33130666 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
33130693 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
33130719 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
33130747 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
33130775 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
33130802 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
33130829 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
33130844 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:33130780 original size:82 final size:81
Alignment explanation
Indices: 33130667--33130822 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
33130657 AAATTGTACA
* *
33130667 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
33130731 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
33130748 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
33130813 TGCGAGTTGA
65 TGCGAATTGA
33130823 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:33130834 original size:82 final size:81
Alignment explanation
Indices: 33130663--33130843 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
33130653 GATTAAATTG
* *
33130663 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
33130728 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
33130744 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
33130808 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
33130826 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
33130844 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:33134361 original size:10 final size:10
Alignment explanation
Indices: 33134346--33134377 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
33134336 TGAATTCATG
33134346 TGTTTTATGA
1 TGTTTTATGA
33134356 TGTTTTATGA
1 TGTTTTATGA
*
33134366 TGTTTGATGA
1 TGTTTTATGA
33134376 TG
1 TG
33134378 AATTATGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.25, T:0.56
Consensus pattern (10 bp):
TGTTTTATGA
Found at i:33134383 original size:20 final size:20
Alignment explanation
Indices: 33134333--33134385 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
33134323 AAGTTTCCAT
*
33134333 TGATGAATTCATG-TGTTTTA
1 TGATGAATT-ATGATGTTTGA
**
33134353 TGATGTTTTATGATGTTTGA
1 TGATGAATTATGATGTTTGA
33134373 TGATGAATTATGA
1 TGATGAATTATGA
33134386 AAGCTTGGTG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
19 3 0.11
20 24 0.89
ACGTcount: A:0.26, C:0.02, G:0.23, T:0.49
Consensus pattern (20 bp):
TGATGAATTATGATGTTTGA
Found at i:33135904 original size:19 final size:19
Alignment explanation
Indices: 33135868--33135906 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
33135858 TTGTCATCAT
* *
33135868 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
33135887 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
33135906 A
1 A
33135907 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:33136410 original size:55 final size:56
Alignment explanation
Indices: 33136345--33136459 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
33136335 AGCATGGCTG
* *
33136345 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * *
33136401 CCAGA-ACAGATATATGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
33136456 CCAG
1 CCAG
33136460 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.56
56 22 0.42
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:33136422 original size:27 final size:27
Alignment explanation
Indices: 33136370--33136459 Score: 119
Period size: 27 Copynumber: 3.2 Consensus size: 27
33136360 GTGACAGAGT
33136370 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
33136399 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
33136426 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
33136454 CACCAG
1 CACCAG
33136460 GACGCTTCCT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 24 0.44
28 24 0.44
29 7 0.13
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:33136612 original size:28 final size:28
Alignment explanation
Indices: 33136565--33136626 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
33136555 AAATTAACCC
*
33136565 TAGGGGTATAAAGGTCATTTTGCACACA
1 TAGGGGTATAAAGGTAATTTTGCACACA
* *
33136593 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCACACA
33136621 TAGGGG
1 TAGGGG
33136627 CATTCTAGTA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.31, C:0.10, G:0.29, T:0.31
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCACACA
Found at i:33141866 original size:20 final size:20
Alignment explanation
Indices: 33141841--33141880 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
33141831 TTATGCCTTT
33141841 CTATATTTCCATCAGCAATG
1 CTATATTTCCATCAGCAATG
33141861 CTATATTTCCATCAGCAATG
1 CTATATTTCCATCAGCAATG
33141881 TGTTTCACGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.35
Consensus pattern (20 bp):
CTATATTTCCATCAGCAATG
Found at i:33142005 original size:13 final size:13
Alignment explanation
Indices: 33141971--33141999 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
33141961 GATATGGCAA
33141971 ATTAGGCTTCCAC
1 ATTAGGCTTCCAC
33141984 ATTAGGCTTCCAC
1 ATTAGGCTTCCAC
33141997 ATT
1 ATT
33142000 TTGCTTGAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.24, C:0.28, G:0.14, T:0.34
Consensus pattern (13 bp):
ATTAGGCTTCCAC
Found at i:33142540 original size:12 final size:12
Alignment explanation
Indices: 33142518--33142557 Score: 73
Period size: 12 Copynumber: 3.4 Consensus size: 12
33142508 TAGCTCAAGG
33142518 TTTCT-TTAGTT
1 TTTCTCTTAGTT
33142529 TTTCTCTTAGTT
1 TTTCTCTTAGTT
33142541 TTTCTCTTAGTT
1 TTTCTCTTAGTT
33142553 TTTCT
1 TTTCT
33142558 TTTTCTTCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
11 5 0.18
12 23 0.82
ACGTcount: A:0.07, C:0.15, G:0.07, T:0.70
Consensus pattern (12 bp):
TTTCTCTTAGTT
Found at i:33142569 original size:24 final size:23
Alignment explanation
Indices: 33142519--33142569 Score: 57
Period size: 24 Copynumber: 2.2 Consensus size: 23
33142509 AGCTCAAGGT
* *
33142519 TTCTTTAGTTTTTCTCTTAGTTT
1 TTCTTTAGTTTTTCTCTTACTTC
* *
33142542 TTCTCTTAGTTTTTCTTTTTCTTC
1 TTCT-TTAGTTTTTCTCTTACTTC
33142566 TTCT
1 TTCT
33142570 AGGGTTTCTT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
23 4 0.17
24 19 0.83
ACGTcount: A:0.06, C:0.18, G:0.06, T:0.71
Consensus pattern (23 bp):
TTCTTTAGTTTTTCTCTTACTTC
Found at i:33148308 original size:29 final size:29
Alignment explanation
Indices: 33148271--33148334 Score: 101
Period size: 29 Copynumber: 2.2 Consensus size: 29
33148261 ACTGTAGGGG
* *
33148271 ACACACGGTCATTCACCTAGTCGTGTGTC
1 ACACACGGTCACTCACCTAGCCGTGTGTC
*
33148300 ACACACGGTCACTCACCTGGCCGTGTGTC
1 ACACACGGTCACTCACCTAGCCGTGTGTC
33148329 ACACAC
1 ACACAC
33148335 TGTTGAGACA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.22, C:0.36, G:0.20, T:0.22
Consensus pattern (29 bp):
ACACACGGTCACTCACCTAGCCGTGTGTC
Found at i:33150308 original size:24 final size:25
Alignment explanation
Indices: 33150260--33150319 Score: 104
Period size: 24 Copynumber: 2.4 Consensus size: 25
33150250 AACTGGGGAA
33150260 AAAGCCCTTTTCGGTAAACTAGGGC
1 AAAGCCCTTTTCGGTAAACTAGGGC
33150285 AAAGCCCTTTTCGGT-AACTAGGGC
1 AAAGCCCTTTTCGGTAAACTAGGGC
*
33150309 ATAGCCCTTTT
1 AAAGCCCTTTT
33150320 GCACTTCCTC
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
24 19 0.56
25 15 0.44
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.28
Consensus pattern (25 bp):
AAAGCCCTTTTCGGTAAACTAGGGC
Found at i:33150403 original size:5 final size:5
Alignment explanation
Indices: 33150373--33150418 Score: 51
Period size: 5 Copynumber: 9.4 Consensus size: 5
33150363 ACATCATGTG
* *
33150373 CATAT CATA- CATAT CATGT GCATAT CATAT CAAAT CATAT -ATAT CA
1 CATAT CATAT CATAT CATAT -CATAT CATAT CATAT CATAT CATAT CA
33150419 AAATCTCATG
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
4 8 0.24
5 22 0.65
6 4 0.12
ACGTcount: A:0.41, C:0.20, G:0.04, T:0.35
Consensus pattern (5 bp):
CATAT
Found at i:33150477 original size:25 final size:25
Alignment explanation
Indices: 33150449--33150496 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
33150439 ATAATTAAAC
* *
33150449 CCTAGGGGTAAAATGGTCATTTTTA
1 CCTAGGGGCAAAATAGTCATTTTTA
33150474 CCTAGGGGCAAAATAGTCATTTT
1 CCTAGGGGCAAAATAGTCATTTT
33150497 CATATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAATAGTCATTTTTA
Found at i:33157234 original size:56 final size:58
Alignment explanation
Indices: 33157140--33157256 Score: 202
Period size: 56 Copynumber: 2.0 Consensus size: 58
33157130 AGGGGATCCA
*
33157140 GAAATCGCTCTGGCCCTATTTCACGAAAATTTAAACATCTCATAAAATACGGCTCATAT
1 GAAATCGCTCTGGCCCTATTTCAC-AAAATTTAAACATCTCACAAAATACGGCTCATAT
33157199 GAAATCGCTC-GGCCCTATTTCAC-AAATTTAAACATCTCACAAAATACGGCTCATAT
1 GAAATCGCTCTGGCCCTATTTCACAAAATTTAAACATCTCACAAAATACGGCTCATAT
33157255 GA
1 GA
33157257 TCATTTCGTT
Statistics
Matches: 57, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
56 34 0.60
58 13 0.23
59 10 0.18
ACGTcount: A:0.36, C:0.25, G:0.12, T:0.27
Consensus pattern (58 bp):
GAAATCGCTCTGGCCCTATTTCACAAAATTTAAACATCTCACAAAATACGGCTCATAT
Done.