Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 105 of 352
Found at i:33534745 original size:55 final size:55
Alignment explanation
Indices: 33534679--33534790 Score: 215
Period size: 55 Copynumber: 2.0 Consensus size: 55
33534669 TACCCTTCAA
*
33534679 ATTGTCTATTAAATATATTGAATTTTAAATTACTCATATTCCAGTGCCCTATAGG
1 ATTGTCTATTAAATATATCGAATTTTAAATTACTCATATTCCAGTGCCCTATAGG
33534734 ATTGTCTATTAAATATATCGAATTTTAAATTACTCATATTCCAGTGCCCTATAGG
1 ATTGTCTATTAAATATATCGAATTTTAAATTACTCATATTCCAGTGCCCTATAGG
33534789 AT
1 AT
33534791 CTACTAGTCT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.33, C:0.15, G:0.11, T:0.41
Consensus pattern (55 bp):
ATTGTCTATTAAATATATCGAATTTTAAATTACTCATATTCCAGTGCCCTATAGG
Found at i:33540180 original size:15 final size:15
Alignment explanation
Indices: 33540160--33540190 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
33540150 GTCCTTCACG
33540160 ATTCTGATGTCCTTA
1 ATTCTGATGTCCTTA
33540175 ATTCTGATGTCCTTA
1 ATTCTGATGTCCTTA
33540190 A
1 A
33540191 CCGAAGAGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.19, G:0.13, T:0.45
Consensus pattern (15 bp):
ATTCTGATGTCCTTA
Found at i:33543291 original size:15 final size:15
Alignment explanation
Indices: 33543273--33543304 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
33543263 TATAATCAAA
33543273 TCACATAAACAAGGG
1 TCACATAAACAAGGG
33543288 TCACATAAACAAGGG
1 TCACATAAACAAGGG
33543303 TC
1 TC
33543305 TAAGTAACGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.44, C:0.22, G:0.19, T:0.16
Consensus pattern (15 bp):
TCACATAAACAAGGG
Found at i:33544046 original size:21 final size:22
Alignment explanation
Indices: 33544020--33544060 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
33544010 CTCTTAACAC
*
33544020 AGGGGC-ACACGTCCGTGTGGG
1 AGGGGCAACACGCCCGTGTGGG
33544041 AGGGGCAACACGCCCGTGTG
1 AGGGGCAACACGCCCGTGTG
33544061 ACATTTCAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.17, C:0.27, G:0.44, T:0.12
Consensus pattern (22 bp):
AGGGGCAACACGCCCGTGTGGG
Found at i:33546249 original size:30 final size:30
Alignment explanation
Indices: 33546215--33546290 Score: 82
Period size: 30 Copynumber: 2.5 Consensus size: 30
33546205 ATAGGAACTA
* *
33546215 TTTTTATTATTATTATTTATTTTAAGTTGT
1 TTTTTATTATTATTATTTATTTTAAATCGT
* *
33546245 TTTTTTTTGA-AATTATTTATTTTAAATCGT
1 TTTTTATT-ATTATTATTTATTTTAAATCGT
33546275 TTTATTATTATGTATT
1 TTT-TTATTAT-TATT
33546291 TTAAGTTTTA
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
30 28 0.78
31 5 0.14
32 3 0.08
ACGTcount: A:0.25, C:0.01, G:0.07, T:0.67
Consensus pattern (30 bp):
TTTTTATTATTATTATTTATTTTAAATCGT
Found at i:33546410 original size:54 final size:54
Alignment explanation
Indices: 33546329--33546569 Score: 180
Period size: 54 Copynumber: 4.6 Consensus size: 54
33546319 TCATTTTAAA
* * **
33546329 TTTTATACATATTATTTATTTTAAACTATTATATATATCATTTATTTTGAAGGTT
1 TTTTATATATATTATTTATTTTAAACTATTATATATATCATCTATTTT-AAAATT
* *
33546384 TTTTATATAT-TTTTTTATTTTAAACTATTATATATATTATCTATTTTAAAA-T
1 TTTTATATATATTATTTATTTTAAACTATTATATATATCATCTATTTTAAAATT
* * * * * * *
33546436 TTTT-TATATGTTAGTTA-GTTATACTATTTTATATGTTAATC-ATTTT-AAATT
1 TTTTATATATATTATTTATTTTAAACTATTATATAT-ATCATCTATTTTAAAATT
** * *
33546487 CCTTAT-TATTATTATTTATTTTGAACT-TTCA-ATATATTAT-TCATTTTAAAATAT
1 TTTTATATA-TATTATTTATTTTAAACTATT-ATATATATCATCT-ATTTTAAAAT-T
* *
33546541 TTTT-TATATACTCTTTATTTTAAACTATT
1 TTTTATATATATTATTTATTTTAAACTATT
33546570 TTATTCAAAA
Statistics
Matches: 145, Mismatches: 28, Indels: 27
0.73 0.14 0.14
Matches are distributed among these distances:
50 3 0.02
51 32 0.22
52 33 0.23
53 27 0.19
54 41 0.28
55 9 0.06
ACGTcount: A:0.32, C:0.06, G:0.03, T:0.59
Consensus pattern (54 bp):
TTTTATATATATTATTTATTTTAAACTATTATATATATCATCTATTTTAAAATT
Found at i:33546417 original size:27 final size:26
Alignment explanation
Indices: 33546313--33546569 Score: 155
Period size: 26 Copynumber: 9.8 Consensus size: 26
33546303 TATTTTAAAC
* * *
33546313 TATTATTCATTTTAAA-TTTTATACA
1 TATTATTTATTTTAAACTATTATATA
33546338 TATTATTTATTTTAAACTATTATATA
1 TATTATTTATTTTAAACTATTATATA
* ** * *
33546364 TATCATTTATTTTGAAGGTTTTTTATA
1 TATTATTTATTTT-AAACTATTATATA
*
33546391 TATTTTTTTATTTTAAACTATTATATA
1 TA-TTATTTATTTTAAACTATTATATA
* * * *
33546418 TATTATCTATTTTAAAATTTTTTATA
1 TATTATTTATTTTAAACTATTATATA
* * * * *
33546444 TGTTAGTTA-GTTATACTATTTTATA
1 TATTATTTATTTTAAACTATTATATA
* * * * *
33546469 TGTTAATCATTTTAAATTCCTTAT-TA
1 TATTATTTATTTTAAACT-ATTATATA
*
33546495 TTATTATTTATTTTGAACT-TTCA-ATA
1 -TATTATTTATTTTAAACTATT-ATATA
* * *
33546521 TATTATTCATTTTAAAATATTTTTTATA
1 TATTATTTATTTTAAACTA--TTATATA
* *
33546549 TACTCTTTATTTTAAACTATT
1 TATTATTTATTTTAAACTATT
33546570 TTATTCAAAA
Statistics
Matches: 174, Mismatches: 46, Indels: 23
0.72 0.19 0.09
Matches are distributed among these distances:
25 51 0.29
26 56 0.32
27 38 0.22
28 29 0.17
ACGTcount: A:0.32, C:0.06, G:0.03, T:0.58
Consensus pattern (26 bp):
TATTATTTATTTTAAACTATTATATA
Found at i:33546549 original size:28 final size:28
Alignment explanation
Indices: 33546518--33546571 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
33546508 TGAACTTTCA
*
33546518 ATATATTATTCATTTTAAAATATTTTTT
1 ATATACTATTCATTTTAAAATATTTTTT
* * *
33546546 ATATACTCTTTATTTTAAACTATTTT
1 ATATACTATTCATTTTAAAATATTTT
33546572 ATTCAAAATT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.59
Consensus pattern (28 bp):
ATATACTATTCATTTTAAAATATTTTTT
Found at i:33551656 original size:19 final size:19
Alignment explanation
Indices: 33551634--33551672 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
33551624 TTGCATTTAT
* *
33551634 TCATCTGCATTACATTTCA
1 TCATATGCATTAAATTTCA
33551653 TCATATGCATTAAATTTCA
1 TCATATGCATTAAATTTCA
33551672 T
1 T
33551673 AAAAAGACCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.31, C:0.21, G:0.05, T:0.44
Consensus pattern (19 bp):
TCATATGCATTAAATTTCA
Found at i:33556150 original size:12 final size:12
Alignment explanation
Indices: 33556133--33556164 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
33556123 ACATGGAAAA
33556133 AACCACATTCGT
1 AACCACATTCGT
33556145 AACCACATTCGT
1 AACCACATTCGT
33556157 AACCACAT
1 AACCACAT
33556165 GGAGAACGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.38, C:0.34, G:0.06, T:0.22
Consensus pattern (12 bp):
AACCACATTCGT
Found at i:33559018 original size:27 final size:27
Alignment explanation
Indices: 33558980--33559034 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
33558970 CCAGGAATGA
33558980 GAAATTCAAATTTTGATCGAAGATGGG
1 GAAATTCAAATTTTGATCGAAGATGGG
33559007 GAAATTCAAATTTTGATCGAAGATGGG
1 GAAATTCAAATTTTGATCGAAGATGGG
33559034 G
1 G
33559035 CATGCGGTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.29
Consensus pattern (27 bp):
GAAATTCAAATTTTGATCGAAGATGGG
Found at i:33559758 original size:34 final size:34
Alignment explanation
Indices: 33559720--33559787 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
33559710 ATTATGTTAG
33559720 ACAACTTGTGCTACTCGGTTTTGAGTGAAAACGA
1 ACAACTTGTGCTACTCGGTTTTGAGTGAAAACGA
33559754 ACAACTTGTGCTACTCGGTTTTGAGTGAAAACGA
1 ACAACTTGTGCTACTCGGTTTTGAGTGAAAACGA
33559788 GTAAAAGGGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (34 bp):
ACAACTTGTGCTACTCGGTTTTGAGTGAAAACGA
Found at i:33560463 original size:46 final size:46
Alignment explanation
Indices: 33560413--33560586 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
33560403 TGGTTGAGCA
*
33560413 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
33560459 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
*
33560506 TCCGAACTCGTTGAGTTGAGTTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAG-TCCGAGTTCACTTATGGATGCAAACG
* *
33560553 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
33560587 GGGGCGGGTT
Statistics
Matches: 108, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 43 0.40
47 39 0.36
48 9 0.08
49 3 0.03
51 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:33560570 original size:94 final size:93
Alignment explanation
Indices: 33560410--33560581 Score: 299
Period size: 94 Copynumber: 1.8 Consensus size: 93
33560400 GGATGGTTGA
* *
33560410 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
33560475 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
33560503 GCATCCGAACTCGTTGAGTTGAGTTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAG-TCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
33560568 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
33560582 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
93 23 0.31
94 51 0.69
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:33567317 original size:46 final size:46
Alignment explanation
Indices: 33567267--33567436 Score: 193
Period size: 46 Copynumber: 3.7 Consensus size: 46
33567257 TTGAGCATCT
*
33567267 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCC
* * * *
33567313 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CGTCC
** * *
33567360 GAACTCGTTGAGTTGAGTTTGAGTTCACTTATGGATGCGAACATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCC
*
33567406 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
33567437 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 14, Indels: 14
0.79 0.11 0.11
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 59 0.57
47 27 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.31
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCC
Found at i:33567420 original size:93 final size:93
Alignment explanation
Indices: 33567261--33567431 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
33567251 GGATGGTTGA
* **
33567261 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACATCCGAACTCGTTGAGT
33567326 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
** * *
33567354 GCATCCGAACTCGTTGAGTTGAGTTTGAGTTCACTTATGGATGCGAACATCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACATCCGAACTCGTTGAGT
33567419 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
33567432 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACATCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:33569499 original size:44 final size:44
Alignment explanation
Indices: 33569403--33569845 Score: 241
Period size: 44 Copynumber: 10.1 Consensus size: 44
33569393 CCATGGTGAA
* ** * * **
33569403 TCTTATCTCCCTGAAGTTGCAGCAGAGCAAATTAAAGCCACGAA-
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATAC-AAG
* * * * *
33569447 TCTCATCTCCCTAAAGTTGAAGTGGAACAGGTTGAAGTTACAAG
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATACAAG
* * *
33569491 TCTTATCTCCCTGAAGTCGCAGTGGAGCAGACTGAAGATAGCGAA-
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATA-C-AAG
* * * * * *
33569536 TCTCATTTCCCTCAAGTTGCAGTGGAGTAGATTGAAGACACAAA
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATACAAG
* * * * *
33569580 CCTTATCTCCTTAAAGTTGCAGTGGAGCAGGTTGAAGTTATAAG
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATACAAG
* * * * * *
33569624 TCTTATCTCCTTGAAGTTACAGTGGAGCAGATAGAA-ACCACTAG
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGA-TACAAG
* * * * ** * *
33569668 TCTCATCTCGCTGAAGTTGCAGTGGAGTAGGCTGAAGCTAGCAAA
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATA-CAAG
* * * * * ** * *
33569713 TCTTATCTTCCTGAAGTTACAGAGAATAAAATTGAAAATAC--G
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATACAAG
* * ** * * *
33569755 TCTCATCTCACTAAAGTTGCAGTATAACAGATTAAAGCTACAAG
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATACAAG
* * * * *
33569799 TCTAATCTCACTGAAGTTTCAGTGGAGCAGATT-AAAACTACAAG
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGA-TACAAG
33569843 TCT
1 TCT
33569846 AGTCTCTTTG
Statistics
Matches: 295, Mismatches: 94, Indels: 20
0.72 0.23 0.05
Matches are distributed among these distances:
42 27 0.09
43 6 0.02
44 197 0.67
45 63 0.21
46 2 0.01
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.27
Consensus pattern (44 bp):
TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATACAAG
Found at i:33569560 original size:89 final size:88
Alignment explanation
Indices: 33569401--33569609 Score: 229
Period size: 89 Copynumber: 2.4 Consensus size: 88
33569391 CACCATGGTG
** * * *
33569401 AATCTTATCTCCCTGAAGTTGCAGCAGAGCAAATTAAAGCCACGAATCTCATCTCCCTAAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGACACGAATCTCATCTCCCTAAAGTTG
* **
33569466 AAGTGGAACAGGTTGAAGTTACA
66 AAGTGGAACAGATTGAAGACACA
* * * * * *
33569489 AGTCTTATCTCCCTGAAGTCGCAGTGGAGCAGACTGAAGATAGCGAATCTCATTTCCCTCAAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGACA-CGAATCTCATCTCCCTAAAGTT
* **
33569554 GCAGTGGAGTAGATTGAAGACACA
65 GAAGTGGAACAGATTGAAGACACA
* * *
33569578 AACCTTATCTCCTTAAAGTTGCAGTGGAGCAG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAG
33569610 GTTGAAGTTA
Statistics
Matches: 98, Mismatches: 22, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
88 33 0.34
89 65 0.66
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (88 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGACACGAATCTCATCTCCCTAAAGTTG
AAGTGGAACAGATTGAAGACACA
Found at i:33569718 original size:133 final size:133
Alignment explanation
Indices: 33569400--33569730 Score: 337
Period size: 133 Copynumber: 2.5 Consensus size: 133
33569390 TCACCATGGT
* * ** * * * * * * *
33569400 GAATCTTATCTCCCTGAAGTTGCAGCAGAGCAAATTAAAGCCACGAATCTCATCTCCCTAAAGTT
1 GAATCTCATCTCCCTCAAGTTGCAGTGGAGTAGACTGAAGACACAAATCTTATCTCCCTAAAGTT
* *
33569465 GAAGTGGAACAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTCGCAGTGGAGCAGACTGAAGAT
66 GAAGTGGAACAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTCACAGTGGAGCAGACTGAAGAC
33569530 AGC
131 AGC
* * * *
33569533 GAATCTCATTTCCCTCAAGTTGCAGTGGAGTAGATTGAAGACACAAACCTTATCTCCTTAAAGTT
1 GAATCTCATCTCCCTCAAGTTGCAGTGGAGTAGACTGAAGACACAAATCTTATCTCCCTAAAGTT
* * * * *
33569598 GCAGTGGAGCAGGTTGAAGTTATAAGTCTTATCTCCTTGAAGTTACAGTGGAGCAGA-TAGAA-A
66 GAAGTGGAACAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTCACAGTGGAGCAGACT-GAAGA
33569661 CCA-C
130 -CAGC
* * * * * * *
33569665 TAGTCTCATCTCGCTGAAGTTGCAGTGGAGTAGGCTGAAG-CTAGCAAATCTTATCTTCCTGAAG
1 GAATCTCATCTCCCTCAAGTTGCAGTGGAGTAGACTGAAGAC-A-CAAATCTTATCTCCCTAAAG
33569729 TT
64 TT
33569731 ACAGAGAATA
Statistics
Matches: 163, Mismatches: 31, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
131 1 0.01
132 37 0.23
133 125 0.77
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (133 bp):
GAATCTCATCTCCCTCAAGTTGCAGTGGAGTAGACTGAAGACACAAATCTTATCTCCCTAAAGTT
GAAGTGGAACAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTCACAGTGGAGCAGACTGAAGAC
AGC
Found at i:33571437 original size:25 final size:25
Alignment explanation
Indices: 33571409--33571487 Score: 95
Period size: 25 Copynumber: 3.0 Consensus size: 25
33571399 TTTTAGGAAC
33571409 TGTTTTATTATTATTTATTTTAAGT
1 TGTTTTATTATTATTTATTTTAAGT
* *
33571434 TGTTTTTCTCATATTATTTATTTTAAAT
1 TG-TTTTAT--TATTATTTATTTTAAGT
* *
33571462 CGTTTTATTATTATGTATTTTAAGT
1 TGTTTTATTATTATTTATTTTAAGT
33571487 T
1 T
33571488 TTACATATTT
Statistics
Matches: 44, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
25 17 0.39
26 5 0.11
27 5 0.11
28 17 0.39
ACGTcount: A:0.24, C:0.04, G:0.08, T:0.65
Consensus pattern (25 bp):
TGTTTTATTATTATTTATTTTAAGT
Found at i:33571592 original size:55 final size:54
Alignment explanation
Indices: 33571519--33571635 Score: 171
Period size: 55 Copynumber: 2.1 Consensus size: 54
33571509 TCATTTTAAA
* * * *
33571519 TTTTATACATATTATTTATTTTAAACTATTATACATATTATTTGTTTTGAAGTTT
1 TTTTATATATATTATTTATTTTAAACTATTATACATATTATCTATTTT-AAATTT
* *
33571574 TTTTATATATATTTTTTATTTTAAACTATTATATATATTATCTATTTTAAATTT
1 TTTTATATATATTATTTATTTTAAACTATTATACATATTATCTATTTTAAATTT
33571628 TTTTATAT
1 TTTTATAT
33571636 GTTAGTTAGT
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
54 13 0.23
55 43 0.77
ACGTcount: A:0.32, C:0.04, G:0.03, T:0.62
Consensus pattern (54 bp):
TTTTATATATATTATTTATTTTAAACTATTATACATATTATCTATTTTAAATTT
Found at i:33571634 original size:26 final size:26
Alignment explanation
Indices: 33571411--33571836 Score: 175
Period size: 26 Copynumber: 16.0 Consensus size: 26
33571401 TTAGGAACTG
*
33571411 TTTTAT-TATTATTTATTTTAAGTTGT
1 TTTTATATATTATTTATTTTAAATT-T
*
33571437 TTTTCTCATATTATTTATTTTAAATCGTT
1 TTTTAT-ATATTATTTATTTTAAAT--TT
* *
33571466 TTATTAT-TATGTATTTTAAGTTTTACA-TA
1 TT-TTATATAT-TA-TTT-A-TTTTAAATTT
* *
33571495 TTTTAAACTATTATTCATTTTAAA-TT
1 TTTTATA-TATTATTTATTTTAAATTT
* * * *
33571521 TTATACATATTATTTATTTTAAACTA
1 TTTTATATATTATTTATTTTAAATTT
* * * *
33571547 TTATACATATTATTTGTTTTGAAGTTTT
1 TTTTATATATTATTTATTTT-AA-ATTT
* * *
33571575 TTTATATATATTTTTTATTTTAAACTA
1 TTT-TATATATTATTTATTTTAAATTT
* *
33571602 TTATATATATTATCTATTTTAAATTT
1 TTTTATATATTATTTATTTTAAATTT
* * * * * *
33571628 TTTTATATGTTAGTTA-GTTATACTG
1 TTTTATATATTATTTATTTTAAATTT
* * * **
33571653 TTTTATTTGTTAATCGTTTTAAATTCCT
1 TTTTATATATTATTTATTTTAAATT--T
* * *
33571681 TATTAT-TATTATTTA-TTTGAA-CT
1 TTTTATATATTATTTATTTTAAATTT
** * *
33571704 TTCAATATATTATTAATTTTAAAATAT
1 TTTTATATATTATTTATTTT-AAATTT
* * * *
33571731 TTTTATATACTCTTTATTTTAAACTA
1 TTTTATATATTATTTATTTTAAATTT
**
33571757 TTTTATATATTATTTATTCAAAATTT
1 TTTTATATATTATTTATTTTAAATTT
** * * * *
33571783 TCATATATAGTATTTAATTTAAACTA
1 TTTTATATATTATTTATTTTAAATTT
* * *
33571809 TTTTACATGTTATTCATTTTGAAATTT
1 TTTTATATATTATTTATTTT-AAATTT
33571836 T
1 T
33571837 ATATTATTTA
Statistics
Matches: 288, Mismatches: 89, Indels: 45
0.68 0.21 0.11
Matches are distributed among these distances:
23 4 0.01
24 8 0.03
25 35 0.12
26 134 0.47
27 32 0.11
28 34 0.12
29 24 0.08
30 10 0.03
31 1 0.00
32 6 0.02
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.59
Consensus pattern (26 bp):
TTTTATATATTATTTATTTTAAATTT
Found at i:33571879 original size:19 final size:20
Alignment explanation
Indices: 33571838--33571881 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 20
33571828 TGAAATTTTA
33571838 TATTATTTAATTTAAGCTCTTT
1 TATTATTTAATTTAAG--CTTT
*
33571860 TATTATTTATTTTAAG-TTT
1 TATTATTTAATTTAAGCTTT
33571879 TAT
1 TAT
33571882 ACATTATTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 6 0.29
22 15 0.71
ACGTcount: A:0.27, C:0.05, G:0.05, T:0.64
Consensus pattern (20 bp):
TATTATTTAATTTAAGCTTT
Found at i:33577814 original size:29 final size:28
Alignment explanation
Indices: 33577748--33577821 Score: 112
Period size: 28 Copynumber: 2.6 Consensus size: 28
33577738 AAGTCTACAA
* *
33577748 ACATTTATATGGCCCACTAGGCCCAATC
1 ACATTCATATGGCCCATTAGGCCCAATC
*
33577776 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCC-AATC
33577805 ACATTCATATGGCCCAT
1 ACATTCATATGGCCCAT
33577822 CTTGCCCGAA
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
28 21 0.51
29 20 0.49
ACGTcount: A:0.28, C:0.31, G:0.14, T:0.27
Consensus pattern (28 bp):
ACATTCATATGGCCCATTAGGCCCAATC
Found at i:33580439 original size:52 final size:51
Alignment explanation
Indices: 33580347--33580451 Score: 113
Period size: 52 Copynumber: 2.0 Consensus size: 51
33580337 TGTATTAAAA
* * * * *
33580347 TTTTCCATCCATAATATACTTGTTCACATTTTATCAAAAAA-GTTTGTTTATT
1 TTTTACATCAATAATATACTTATTCACAATTTACCAAAAAATGTTT-TTT-TT
* * *
33580399 TTTTACATCAATAATATATTTATTTACAATTTACCCAAAAATGTTTTTTTT
1 TTTTACATCAATAATATACTTATTCACAATTTACCAAAAAATGTTTTTTTT
33580450 TT
1 TT
33580452 AATTTGGTCG
Statistics
Matches: 44, Mismatches: 8, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
51 4 0.09
52 36 0.82
53 4 0.09
ACGTcount: A:0.32, C:0.13, G:0.04, T:0.50
Consensus pattern (51 bp):
TTTTACATCAATAATATACTTATTCACAATTTACCAAAAAATGTTTTTTTT
Found at i:33584350 original size:33 final size:34
Alignment explanation
Indices: 33584313--33584387 Score: 100
Period size: 34 Copynumber: 2.3 Consensus size: 34
33584303 CCCATATCAA
*
33584313 TAGCAATATCAATGT-GGCCTTAGCCCACTACAG
1 TAGCAATATCAATGTGGGCCTTAGCCCAATACAG
* * *
33584346 TAGCAGTAACAATGTGGGCCTTAGCCCAATTCAG
1 TAGCAATATCAATGTGGGCCTTAGCCCAATACAG
33584380 TA-CAATAT
1 TAGCAATAT
33584388 TAGAAATTCA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
33 17 0.49
34 18 0.51
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (34 bp):
TAGCAATATCAATGTGGGCCTTAGCCCAATACAG
Found at i:33588317 original size:6 final size:6
Alignment explanation
Indices: 33588306--33588337 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
33588296 GTTACATTAG
33588306 TTTTCT TTTTCT TTTTC- TTTTC- TTTTCT TTTT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTT
33588338 GCAAAAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 10 0.40
6 15 0.60
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTCT
Found at i:33595335 original size:18 final size:18
Alignment explanation
Indices: 33595306--33595343 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
33595296 TCTTCTTCTT
*
33595306 ATTTCCCTTTTTCTTTTA
1 ATTTCCCTTTTTATTTTA
*
33595324 ATTTCCTTTTTTATTTTA
1 ATTTCCCTTTTTATTTTA
33595342 AT
1 AT
33595344 ATTTGAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.68
Consensus pattern (18 bp):
ATTTCCCTTTTTATTTTA
Found at i:33597797 original size:31 final size:31
Alignment explanation
Indices: 33597755--33597825 Score: 115
Period size: 31 Copynumber: 2.3 Consensus size: 31
33597745 AGTACTTCAT
*
33597755 GATAAACTATTAAGCTAACTACAGTTTAACC
1 GATAAAATATTAAGCTAACTACAGTTTAACC
33597786 GATAAAATATTAAGCTAACTACAGTTTAACC
1 GATAAAATATTAAGCTAACTACAGTTTAACC
*
33597817 AATGAAAAT
1 GAT-AAAAT
33597826 TCTCCCGAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
31 32 0.86
32 5 0.14
ACGTcount: A:0.46, C:0.15, G:0.10, T:0.28
Consensus pattern (31 bp):
GATAAAATATTAAGCTAACTACAGTTTAACC
Found at i:33600122 original size:23 final size:23
Alignment explanation
Indices: 33600063--33600128 Score: 61
Period size: 23 Copynumber: 3.0 Consensus size: 23
33600053 TCTTTTATTT
33600063 ATATTATAATAAT-ATTT-AATAA
1 ATATTA-AATAATAATTTAAATAA
* *
33600085 A-A-T-ACTAATATTTTAAATAA
1 ATATTAAATAATAATTTAAATAA
*
33600105 ATATTAAATAATAATTTAATTAA
1 ATATTAAATAATAATTTAAATAA
33600128 A
1 A
33600129 ATATGATTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 9
0.71 0.10 0.19
Matches are distributed among these distances:
18 5 0.15
19 3 0.09
20 7 0.21
21 2 0.06
22 2 0.06
23 15 0.44
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (23 bp):
ATATTAAATAATAATTTAAATAA
Found at i:33610395 original size:325 final size:325
Alignment explanation
Indices: 33609805--33610453 Score: 1226
Period size: 325 Copynumber: 2.0 Consensus size: 325
33609795 AAGGCATTAT
33609805 CATTTTATTTCTACATTACACATTTAATTCACGGTCATGACCACCTCGATTGGTCATAAAACATG
1 CATTTTATTTCTACATTACACATTTAATTCACGGTCATGACCACCTCGATTGGTCATAAAACATG
33609870 CATTCAACACACATGACATATTACCAACCATGCATGGCAAACAGACATATTCACATCACAATTAT
66 CATTCAACACACATGACATATTACCAACCATGCATGGCAAACAGACATATTCACATCACAATTAT
*
33609935 TAGACACGACATGAATAGTTAGATTTATAAGTCGTAATCAATAGCTCAATATAGGCCAAAACATT
131 TAGACACAACATGAATAGTTAGATTTATAAGTCGTAATCAATAGCTCAATATAGGCCAAAACATT
* *
33610000 TGGCCAAATCATAATAACACATGTCATAGAACTAGGTCTCTATACATGCCAGTCACTTGATATTT
196 TGGACAAATCATAATAACACATGTCATAGAACTAGGTCTCTATACATGCCAATCACTTGATATTT
** * *
33610065 CTAACTTATGTATAAATACTCCAAAGGTATTGGCTTGATAGTGTGATGTTTCCTCTGACGATCTA
261 CTAACTTATGTATAAATACTCCAAAGGTATTGGCTTGATAGAATGATGTTGCCTCTGAAGATCTA
33610130 CATTTTATTTCTACATTACACATTTAATTCACGGTCATGACCACCTCGATTGGTCATAAAACATG
1 CATTTTATTTCTACATTACACATTTAATTCACGGTCATGACCACCTCGATTGGTCATAAAACATG
33610195 CATTCAACACACATGACATATTACCAACCATGCATGGCAAACAGACATATTCACATCACAATTAT
66 CATTCAACACACATGACATATTACCAACCATGCATGGCAAACAGACATATTCACATCACAATTAT
33610260 TAGACACAACATGAATAGTTAGATTTATAAGTCGTAATCAATAGCTCAATATAGGCCAAAACATT
131 TAGACACAACATGAATAGTTAGATTTATAAGTCGTAATCAATAGCTCAATATAGGCCAAAACATT
*
33610325 TGGACAAATCATAATAACACATGTCATAGAACTAGGTCTCTATATATGCCAATCACTTGATATTT
196 TGGACAAATCATAATAACACATGTCATAGAACTAGGTCTCTATACATGCCAATCACTTGATATTT
33610390 CTAACTTATGTATAAATACTCCAAAGGTATTGGCTTGATAGAATGATGTTGCCTCTGAAGATCT
261 CTAACTTATGTATAAATACTCCAAAGGTATTGGCTTGATAGAATGATGTTGCCTCTGAAGATCT
33610454 CCAACCCTGA
Statistics
Matches: 316, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
325 316 1.00
ACGTcount: A:0.36, C:0.20, G:0.13, T:0.31
Consensus pattern (325 bp):
CATTTTATTTCTACATTACACATTTAATTCACGGTCATGACCACCTCGATTGGTCATAAAACATG
CATTCAACACACATGACATATTACCAACCATGCATGGCAAACAGACATATTCACATCACAATTAT
TAGACACAACATGAATAGTTAGATTTATAAGTCGTAATCAATAGCTCAATATAGGCCAAAACATT
TGGACAAATCATAATAACACATGTCATAGAACTAGGTCTCTATACATGCCAATCACTTGATATTT
CTAACTTATGTATAAATACTCCAAAGGTATTGGCTTGATAGAATGATGTTGCCTCTGAAGATCTA
Found at i:33611466 original size:50 final size:50
Alignment explanation
Indices: 33611402--33611637 Score: 314
Period size: 50 Copynumber: 4.7 Consensus size: 50
33611392 CTGGTATGCA
*
33611402 TAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACG
* * *
33611452 TAGGAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACG
* * * ** * *
33611502 TAGTAGCCTGCACTTAGTACTACACA--CGTATCGAAGCTATCAAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCG-ACCTAA-CAATCTGGTACACG
*
33611552 TAGTAGCATGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACG
* *
33611602 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAA
33611638 AACCGTCTTA
Statistics
Matches: 158, Mismatches: 24, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
48 1 0.01
49 4 0.03
50 147 0.93
51 4 0.03
52 2 0.01
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACG
Found at i:33611678 original size:150 final size:150
Alignment explanation
Indices: 33611399--33611680 Score: 433
Period size: 150 Copynumber: 1.9 Consensus size: 150
33611389 TCTCTGGTAT
*
33611399 GCATAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGGAGCCTGCA
1 GCATAGTAGCATACACTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGGAGCCTGCA
* ** * * *
33611464 CTTAGTACTACACATGTGACCTAACCATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACAC
66 CTTAGTACTACACACGTGACCTAACCATCTGAAACACATAGTAGCCTACACATAGTACTACACAC
33611529 GTATCGAAGCTATCAAGTAC
131 GTATCGAAGCTATCAAGTAC
* *
33611549 GCATAGTAGCATGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAGCCTGCA
1 GCATAGTAGCATACACTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGGAGCCTGCA
* *
33611614 CTTAGTACTACACACGTGACCTAAAACCGTCTTAAACACATAGTAGCCTACACATAGTA-T-CAC
66 CTTAGTACTACACACGTGACCT--AACCATCTGAAACACATAGTAGCCTACACATAGTACTACAC
33611677 ACGT
129 ACGT
33611681 GGTCTTTCTA
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
150 90 0.76
151 1 0.01
152 28 0.24
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (150 bp):
GCATAGTAGCATACACTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGGAGCCTGCA
CTTAGTACTACACACGTGACCTAACCATCTGAAACACATAGTAGCCTACACATAGTACTACACAC
GTATCGAAGCTATCAAGTAC
Found at i:33614297 original size:16 final size:17
Alignment explanation
Indices: 33614268--33614300 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
33614258 ATCACAATAA
*
33614268 AATAAAGTTCTAATATT
1 AATAAACTTCTAATATT
33614285 AATAAACTT-TAATATT
1 AATAAACTTCTAATATT
33614301 TTGATATTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.48, C:0.06, G:0.03, T:0.42
Consensus pattern (17 bp):
AATAAACTTCTAATATT
Found at i:33624032 original size:3 final size:3
Alignment explanation
Indices: 33624024--33624058 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
33624014 ATCACATGTT
33624024 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
33624059 TGGATGTAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:33624178 original size:73 final size:73
Alignment explanation
Indices: 33624059--33624244 Score: 345
Period size: 73 Copynumber: 2.5 Consensus size: 73
33624049 TATTATTATT
* *
33624059 TGGATGTAATGATGTAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAAGTGGTGATTT
33624124 ATTTTAAG
66 ATTTTAAG
*
33624132 TGGATGTAATGATGAAACTTAATTGTATTCCAACTAAGTTTGTTAGTGGTAGTAAGTGGTGATTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAAGTGGTGATTT
33624197 ATTTTAAG
66 ATTTTAAG
33624205 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTT
33624245 GTCAAGTTGT
Statistics
Matches: 109, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
73 109 1.00
ACGTcount: A:0.29, C:0.06, G:0.24, T:0.41
Consensus pattern (73 bp):
TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAAGTGGTGATTT
ATTTTAAG
Found at i:33628603 original size:73 final size:73
Alignment explanation
Indices: 33628484--33628669 Score: 354
Period size: 73 Copynumber: 2.5 Consensus size: 73
33628474 TATTATTATT
* *
33628484 TGGATGTAATGATGTAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAAGTGGTGATTT
33628549 ATTTTAAG
66 ATTTTAAG
33628557 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAAGTGGTGATTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAAGTGGTGATTT
33628622 ATTTTAAG
66 ATTTTAAG
33628630 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTT
33628670 GTCAAGTTGT
Statistics
Matches: 111, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
73 111 1.00
ACGTcount: A:0.28, C:0.06, G:0.24, T:0.41
Consensus pattern (73 bp):
TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAAGTGGTGATTT
ATTTTAAG
Found at i:33629731 original size:21 final size:21
Alignment explanation
Indices: 33629703--33629742 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
33629693 CCATAGAAGC
33629703 CAAGGGAAC-TGAGACTGTAA
1 CAAGGGAACGTGAGACTGTAA
*
33629723 CAAGAGGAACGTGTGACTGT
1 CAAG-GGAACGTGAGACTGT
33629743 TGATAAGTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 5 0.29
22 8 0.47
ACGTcount: A:0.35, C:0.15, G:0.33, T:0.17
Consensus pattern (21 bp):
CAAGGGAACGTGAGACTGTAA
Found at i:33635228 original size:3 final size:3
Alignment explanation
Indices: 33635220--33635279 Score: 61
Period size: 3 Copynumber: 20.0 Consensus size: 3
33635210 TTCGGGAACA
* *
33635220 AAG AAG AAG AAG AAA AAG AGAG AAG AAG GA- AAG AAG -AG AAG AAG
1 AAG AAG AAG AAG AAG AAG A-AG AAG AAG AAG AAG AAG AAG AAG AAG
*
33635264 AAG AAAG AAA AAG AAG
1 AAG -AAG AAG AAG AAG
33635280 GAGAGGAGGA
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
2 3 0.06
3 38 0.81
4 6 0.13
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:33635245 original size:16 final size:16
Alignment explanation
Indices: 33635219--33635269 Score: 68
Period size: 18 Copynumber: 3.1 Consensus size: 16
33635209 TTTCGGGAAC
33635219 AAAGA-AGAAGAAGAA
1 AAAGAGAGAAGAAGAA
33635234 AAAGAGAGAAGAAGGAA
1 AAAGAGAGAAGAA-GAA
33635251 AGAAGAGAAGAAGAAGAA
1 A-AAGAG-AGAAGAAGAA
33635269 A
1 A
33635270 GAAAAAGAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
15 5 0.16
16 7 0.22
17 4 0.12
18 9 0.28
19 7 0.22
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (16 bp):
AAAGAGAGAAGAAGAA
Found at i:33635277 original size:16 final size:17
Alignment explanation
Indices: 33635223--33635279 Score: 73
Period size: 16 Copynumber: 3.4 Consensus size: 17
33635213 GGGAACAAAG
33635223 AAGAAGAAGAAA-AAGA
1 AAGAAGAAGAAAGAAGA
*
33635239 GAGAAGAAGGAAAGAAGA
1 AAGAAGAA-GAAAGAAGA
33635257 GAAGAAGAAGAAAGAA-A
1 -AAGAAGAAGAAAGAAGA
33635274 AAGAAG
1 AAGAAG
33635280 GAGAGGAGGA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
16 13 0.36
17 5 0.14
18 11 0.31
19 7 0.19
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (17 bp):
AAGAAGAAGAAAGAAGA
Found at i:33635987 original size:136 final size:134
Alignment explanation
Indices: 33635841--33636513 Score: 476
Period size: 145 Copynumber: 4.9 Consensus size: 134
33635831 AAATAATATA
** *
33635841 AAAATAAAATATGAAAATAGTATATTTTAAAAAATAAAAT-CTGAAAATAAAAAAATACGAACAA
1 AAAATAAAATACCAAAATAATATATTTTAAAAAATAAAATAC-G---A-AAAAAAATACGAACAA
* * * *
33635905 GGTGCCAAAGTCA-GGTTATTTATTAAATTAATAT-AAAAAA-ACTTAAATAATACATTTGAAAG
61 AGTGCCAAAATCAGGGTTATTTATTAAA-AAATATAAAAAAACACTTAAATAATACATTTGAAAC
* *
33635967 ATTTTATGCT
125 ATTATATACT
* *
33635977 AAAATAAAATACCAAAATAATATATTTTAAAAAATAATATACGAAAAAAAATACGAATAAAGTGC
1 AAAATAAAATACCAAAATAATATATTTTAAAAAATAAAATACGAAAAAAAATACGAACAAAGTGC
*
33636042 TAAAATCAGGGTTATTTATTAAAAAATATAAAAAAAACACTTAAATAATACATTTGAAACATTAT
66 CAAAATCAGGGTTATTTATTAAAAAATAT-AAAAAAACACTTAAATAATACATTTGAAACATTAT
*
33636107 GTACT
130 ATACT
* * *** * ***
33636112 AAAATAATATA-AAGAAATAA-A-ATACGAAAATAAT-ATATTTTAAAAATAATATACG-A-AAA
1 AAAATAAAATACCA-AAATAATATATTTTAAAA-AATAAAATACGAAAAA-AA-ATACGAACAAA
*** * * * *
33636171 -TAAAAAAATCAGGGTTATTTAGTAAATTAATATAAAGAAACACTTAAGTAATACATTTGAAATT
62 GTGCCAAAATCAGGGTTATTTATTAAA-AAATATAAAAAAACACTTAAATAATACATTTGAAA--
* *
33636235 TTTTTGCTAAAATAATATA-A
124 ------C----ATTATATACT
** * * * *
33636255 AAAATAAAATAAGAAAATAATATATTTTAAAAAATAATATAC-TAATAAAATACGAATAAAGTGC
1 AAAATAAAATACCAAAATAATATATTTTAAAAAATAAAATACGAAAAAAAATACGAACAAAGTGC
* * *
33636319 TAAAATCAGGGTTATTTATTGAAAAATAT-AAAAAATACTTAAATAATACATTTGAAACATTATA
66 CAAAATCAGGGTTATTTATTAAAAAATATAAAAAAACACTTAAATAATACATTTGAAACATTATA
33636383 TACTAAAATAATAT
131 TAC----------T
* * *
33636397 GAAGAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATACG-AAAAAAATACGAAGAAAG
1 --A-AAATAAAATACCAAAATAATATATTTTAAAAAATAAAATACGAAAAAAAATACGAACAAAG
* * * *
33636461 TGTCAAAATCAGGGTTATTTATTAAATTAGTATAAAAAAACACTTACATAATA
63 TGCCAAAATCAGGGTTATTTATTAAA-AAATATAAAAAAACACTTAAATAATA
33636514 TACCTAATAC
Statistics
Matches: 429, Mismatches: 62, Indels: 81
0.75 0.11 0.14
Matches are distributed among these distances:
131 7 0.02
132 79 0.18
133 38 0.09
134 14 0.03
135 50 0.12
136 37 0.09
137 1 0.00
140 1 0.00
142 5 0.01
143 44 0.10
144 23 0.05
145 109 0.25
146 4 0.01
147 17 0.04
ACGTcount: A:0.56, C:0.06, G:0.08, T:0.29
Consensus pattern (134 bp):
AAAATAAAATACCAAAATAATATATTTTAAAAAATAAAATACGAAAAAAAATACGAACAAAGTGC
CAAAATCAGGGTTATTTATTAAAAAATATAAAAAAACACTTAAATAATACATTTGAAACATTATA
TACT
Found at i:33636146 original size:29 final size:29
Alignment explanation
Indices: 33636114--33636173 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
33636104 TATGTACTAA
33636114 AATA-ATATAAAGAAATAAAATACGAAAAT
1 AATATATATAAA-AAATAAAATACGAAAAT
* * *
33636143 AATATATTTTAAAAATAATATACGAAAAT
1 AATATATATAAAAAATAAAATACGAAAAT
33636172 AA
1 AA
33636174 AAAAATCAGG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 22 0.81
30 5 0.19
ACGTcount: A:0.65, C:0.03, G:0.05, T:0.27
Consensus pattern (29 bp):
AATATATATAAAAAATAAAATACGAAAAT
Found at i:33636260 original size:12 final size:13
Alignment explanation
Indices: 33636243--33636278 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
33636233 TTTTTTTGCT
33636243 AAAATAATATAA-
1 AAAATAATATAAG
*
33636255 AAAATAAAATAAG
1 AAAATAATATAAG
33636268 AAAATAATATA
1 AAAATAATATA
33636279 TTTTAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 11 0.52
13 10 0.48
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (13 bp):
AAAATAATATAAG
Found at i:33636639 original size:155 final size:153
Alignment explanation
Indices: 33636175--33637025 Score: 906
Period size: 156 Copynumber: 5.7 Consensus size: 153
33636165 CGAAAATAAA
* * * *
33636175 AAAATCAGGGTTATTTAGTAAATTAATATAAAGAAACAC-T--TAAGTAATACATTTGAAA-TTT
1 AAAATCAGGGTTATTTATTAAATTAATATAAAAAAACACTTACTAAATAATACATTTGAAACATT
* * * *
33636236 TTTTGCTAAAATAATATAAA-AAATAAAAT-A-A-GAAAATAATATATTTTAAAAAATAATATAC
66 ATGTACTAAAATAATATAAAGAAATAAAATAATACGAAAATAATATATTTTAAAAAATAAGATAC
* * *
33636297 TAATAAAATACGAATAAAGTG-C
131 AAAAAAAATACGAAAAAAGTGTC
*
33636319 TAAAATCAGGGTTATTTATTGAAA--AATAT-AAAAAATAC-T--TAAATAATACATTTGAAACA
1 -AAAATCAGGGTTATTTATT-AAATTAATATAAAAAAACACTTACTAAATAATACATTTGAAACA
* *
33636378 TTATATACTAAAATAATATGAAGAAAT--AA-AATACGAAAATAATATATTTTAAAAAATAAGAT
64 TTATGTACTAAAATAATATAAAGAAATAAAATAATACGAAAATAATATATTTTAAAAAATAAGAT
* *
33636440 ACGAAAAAAATACGAAGAAAGTGTC
129 ACAAAAAAAATACGAAAAAAGTGTC
*
33636465 AAAATCAGGGTTATTTATTAAATTAGTATAAAAAAACACTTACATAATATACCTAATACATTTGA
1 AAAATCAGGGTTATTTATTAAATTAATATAAAAAAACACTTAC-T-A-A-A--TAATACATTTGA
* * *
33636530 AACAATT-TTTGCTCAAATAATATAAA-AAA-AATAA-AATACGAAAATAATATATTTT-AAAAA
60 AAC-ATTATGTACTAAAATAATATAAAGAAATAA-AATAATACGAAAATAATATATTTTAAAAAA
* *
33636590 TAATATAC-AAAAAAATACGAATAAAGTG-C
123 TAAGATACAAAAAAAATACGAAAAAAGTGTC
*
33636619 TAAAATCAGGGTTATTTATTAAA-AAATAT-AAAAAACAC-T--TAAATAATACATTTGAAACAT
1 -AAAATCAGGGTTATTTATTAAATTAATATAAAAAAACACTTACTAAATAATACATTTGAAACAT
* * *
33636679 TACGTACTAAAATAATATAAAGAAATAAAATAATAAGAAAGTAATATATTTTAAAAAATAAGATA
65 TATGTACTAAAATAATATAAAGAAATAAAATAATACGAAAATAATATATTTTAAAAAATAAGATA
*
33636744 CGAAAATAAAAAAAATATGAAAAAAGTGTC
130 C------AAAAAAAATACGAAAAAAGTGTC
* *
33636774 AAAATCAGTGTTATTTATTAAACTAATATAAAAAAACACTTAC---ATAATACATTTGAAACATT
1 AAAATCAGGGTTATTTATTAAATTAATATAAAAAAACACTTACTAAATAATACATTTGAAACATT
*
33636836 ATGTACTAAAATAATATAAAGAAATAAAATAATACGAAAGTAATATATTTTAAAAAATAAGATAC
66 ATGTACTAAAATAATATAAAGAAATAAAATAATACGAAAATAATATATTTTAAAAAATAAGATAC
33636901 AAAAATAAAAAAATACGAAAAAAGTGTC
131 ----A-AAAAAAATACGAAAAAAGTGTC
*
33636929 AAAATCAGTGTTATTTATTAAATTAATAT--AAAAACACTTAC---ATAATACATTTGAAACATT
1 AAAATCAGGGTTATTTATTAAATTAATATAAAAAAACACTTACTAAATAATACATTTGAAACATT
* *
33636989 -TTTGCTAAAATAATATAAA-AAAT--AAT-ATACGAAAATA
66 ATGTACTAAAATAATATAAAGAAATAAAATAATACGAAAATA
33637026 TTTTACTTAT
Statistics
Matches: 621, Mismatches: 42, Indels: 83
0.83 0.06 0.11
Matches are distributed among these distances:
143 31 0.05
144 57 0.09
145 93 0.15
146 30 0.05
147 21 0.03
148 12 0.02
149 4 0.01
151 5 0.01
152 19 0.03
153 41 0.07
154 49 0.08
155 99 0.16
156 133 0.21
157 27 0.04
ACGTcount: A:0.56, C:0.07, G:0.08, T:0.29
Consensus pattern (153 bp):
AAAATCAGGGTTATTTATTAAATTAATATAAAAAAACACTTACTAAATAATACATTTGAAACATT
ATGTACTAAAATAATATAAAGAAATAAAATAATACGAAAATAATATATTTTAAAAAATAAGATAC
AAAAAAAATACGAAAAAAGTGTC
Found at i:33636707 original size:300 final size:293
Alignment explanation
Indices: 33635977--33637025 Score: 1297
Period size: 300 Copynumber: 3.6 Consensus size: 293
33635967 ATTTTATGCT
*
33635977 AAAATAAAATACCAAAATAATATATTTTAAAAAATAATATACGAAAAAAAATACGAATAAAGTGC
1 AAAATAAAATACGAAAATAATATATTTTAAAAAATAATATAC-AAAAAAAATACGAATAAAGTGC
33636042 TAAAATCAGGGTTATTTATTAAAAAATATAAAAAAAACACTTAAATAATACATTTGAAACATTAT
65 TAAAATCAGGGTTATTTATTAAAAAATAT--AAAAAACACTTAAATAATACATTTGAAACATTAT
* *
33636107 GTACTAAAATAATATAAAGAAATAAAATACGAAAATAATATATTTT-AAAAATAATATACG----
128 ATACTAAAATAATATAAAGAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATACGAAAA
* * *
33636167 AAAAT------AAA-----AAAATCAGGGTTATTTAGTAAATTAATATAAAGAAACACTTA-AGT
193 AAAATACGAAAAAAGTGTCAAAATCAGGGTTATTTATTAAACTAATATAAAAAAACACTTACA-T
**
33636220 AATACATTTGAAATTTTTTTGCTAAAATAATAT--AA
257 AATACATTTGAAACATTTTTGCTAAAATAATATAAAA
* * *
33636255 AAAATAAAATAAGAAAATAATATATTTTAAAAAATAATATACTAATAAAATACGAATAAAGTGCT
1 AAAATAAAATACGAAAATAATATATTTTAAAAAATAATATACAAAAAAAATACGAATAAAGTGCT
* *
33636320 AAAATCAGGGTTATTTATTGAAAAATATAAAAAATACTTAAATAATACATTTGAAACATTATATA
66 AAAATCAGGGTTATTTATTAAAAAATATAAAAAACACTTAAATAATACATTTGAAACATTATATA
*
33636385 CTAAAATAATATGAAGAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATACG-AAAAAA
131 CTAAAATAATATAAAGAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATACGAAAAAAA
* * *
33636449 ATACGAAGAAAGTGTCAAAATCAGGGTTATTTATTAAATTAGTATAAAAAAACACTTACATAATA
196 ATACGAAAAAAGTGTCAAAATCAGGGTTATTTATTAAACTAATATAAAAAAACACTTAC------
*
33636514 TACCTAATACATTTGAAACAATTTTTGCTCAAATAATATAAAA
255 -A--TAATACATTTGAAAC-ATTTTTGCTAAAATAATATAAAA
33636557 AAAATAAAATACGAAAATAATATATTTT-AAAAATAATATAC-AAAAAAATACGAATAAAGTGCT
1 AAAATAAAATACGAAAATAATATATTTTAAAAAATAATATACAAAAAAAATACGAATAAAGTGCT
**
33636620 AAAATCAGGGTTATTTATTAAAAAATATAAAAAACACTTAAATAATACATTTGAAACATTACGTA
66 AAAATCAGGGTTATTTATTAAAAAATATAAAAAACACTTAAATAATACATTTGAAACATTATATA
* *
33636685 CTAAAATAATATAAAGAAATAAAATAATAAGAAAGTAATATATTTTAAAAAATAAGATACGAAAA
131 CTAAAATAATATAAAGAAAT--AA-AATACGAAAATAATATATTTTAAAAAATAAGATACG----
* *
33636750 TAAAAAAAATATGAAAAAAGTGTCAAAATCAGTGTTATTTATTAAACTAATATAAAAAAACACTT
189 -AAAAAAAATACGAAAAAAGTGTCAAAATCAGGGTTATTTATTAAACTAATATAAAAAAACACTT
* *
33636815 ACATAATACATTTGAAACATTATGTACTAAAATAATATAAAGA
253 ACATAATACATTTGAAACATT-TTTGCTAAAATAATATAAA-A
* * *
33636858 AATAA-AATAATACGAAAGTAATATATTTTAAAAAATAAGATACAAAAATAAAAAAATACGAAAA
1 AA-AATAA-AATACGAAAATAATATATTTTAAAAAATAATATAC----A-AAAAAAATACGAATA
* * *
33636922 AAGTG-TCAAAATCAGTGTTATTTATTAAATTAATAT-AAAAACACTTACATAATACATTTGAAA
59 AAGTGCT-AAAATCAGGGTTATTTATTAAA-AAATATAAAAAACACTTAAATAATACATTTGAAA
* * *
33636985 CATT-TTTGCTAAAATAATATAAA-AAATAATATACGAAAATA
122 CATTATATACTAAAATAATATAAAGAAATAAAATACGAAAATA
33637026 TTTTACTTAT
Statistics
Matches: 677, Mismatches: 45, Indels: 72
0.85 0.06 0.09
Matches are distributed among these distances:
275 77 0.11
276 13 0.02
277 48 0.07
278 40 0.06
279 5 0.01
285 3 0.00
290 39 0.06
298 1 0.00
299 17 0.03
300 149 0.22
301 18 0.03
302 54 0.08
303 46 0.07
304 9 0.01
305 2 0.00
307 4 0.01
308 17 0.03
309 130 0.19
310 5 0.01
ACGTcount: A:0.57, C:0.07, G:0.07, T:0.29
Consensus pattern (293 bp):
AAAATAAAATACGAAAATAATATATTTTAAAAAATAATATACAAAAAAAATACGAATAAAGTGCT
AAAATCAGGGTTATTTATTAAAAAATATAAAAAACACTTAAATAATACATTTGAAACATTATATA
CTAAAATAATATAAAGAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATACGAAAAAAA
ATACGAAAAAAGTGTCAAAATCAGGGTTATTTATTAAACTAATATAAAAAAACACTTACATAATA
CATTTGAAACATTTTTGCTAAAATAATATAAAA
Found at i:33644308 original size:23 final size:24
Alignment explanation
Indices: 33644278--33644336 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
33644268 AATAATAATA
* *
33644278 ACTAACAATAAT-TATGGTTTTTT
1 ACTAACAATAATAAATGATTTTTT
33644301 ACTAACAATAATAGCAATGATTTTTT
1 ACTAACAATAATA--AATGATTTTTT
33644327 ACTAACAATA
1 ACTAACAATA
33644337 TTAATAACTA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
23 12 0.39
26 19 0.61
ACGTcount: A:0.42, C:0.12, G:0.07, T:0.39
Consensus pattern (24 bp):
ACTAACAATAATAAATGATTTTTT
Found at i:33644461 original size:16 final size:17
Alignment explanation
Indices: 33644434--33644520 Score: 65
Period size: 17 Copynumber: 5.2 Consensus size: 17
33644424 AAAAATTATA
* *
33644434 CCTTCTTTTTTTCTTTT
1 CCTTCTTTTTTCCTTCT
*
33644451 CTTTCTTTTTTCCTTCT
1 CCTTCTTTTTTCCTTCT
33644468 CCTTCTTTTTCTTCCTTCT
1 CCTTC-TTTT-TTCCTTCT
** *
33644487 -CTTCTCCTTTCTTTC-
1 CCTTCTTTTTTCCTTCT
*
33644502 CCTT-TATTTT-CTTCT
1 CCTTCTTTTTTCCTTCT
33644517 CCTT
1 CCTT
33644521 GCTCCCGAAG
Statistics
Matches: 56, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
14 3 0.05
15 8 0.14
16 9 0.16
17 20 0.36
18 8 0.14
19 8 0.14
ACGTcount: A:0.01, C:0.32, G:0.00, T:0.67
Consensus pattern (17 bp):
CCTTCTTTTTTCCTTCT
Found at i:33644467 original size:15 final size:17
Alignment explanation
Indices: 33644434--33644491 Score: 56
Period size: 13 Copynumber: 3.6 Consensus size: 17
33644424 AAAAATTATA
33644434 CCTTCT-TT-TTTTCTT
1 CCTTCTCTTCTTTTCTT
33644449 --TTCT-TTCTTTT-TT
1 CCTTCTCTTCTTTTCTT
33644462 CCTTCTCCTTCTTTTTCTT
1 CCTTCT-CTTC-TTTTCTT
33644481 CCTTCTCTTCT
1 CCTTCTCTTCT
33644492 CCTTTCTTTC
Statistics
Matches: 36, Mismatches: 0, Indels: 12
0.75 0.00 0.25
Matches are distributed among these distances:
13 8 0.22
14 4 0.11
15 4 0.11
17 4 0.11
18 8 0.22
19 8 0.22
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (17 bp):
CCTTCTCTTCTTTTCTT
Found at i:33644497 original size:19 final size:19
Alignment explanation
Indices: 33644454--33644499 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
33644444 TTCTTTTCTT
*
33644454 TCTTTTTTCCTTCTCCTTC
1 TCTTTCTTCCTTCTCCTTC
*
33644473 TTTTTCTTCCTTCT-CTTC
1 TCTTTCTTCCTTCTCCTTC
33644491 TCCTTTCTT
1 T-CTTTCTT
33644500 TCCCTTTATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 5 0.22
19 18 0.78
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (19 bp):
TCTTTCTTCCTTCTCCTTC
Found at i:33645372 original size:21 final size:20
Alignment explanation
Indices: 33645347--33645389 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
33645337 TGGGTTGATT
*
33645347 TTATATATATAATTAGTAGTA
1 TTATATATATAATT-GTAATA
*
33645368 TTATATTTATAATTGTAATA
1 TTATATATATAATTGTAATA
33645388 TT
1 TT
33645390 CTCAAAAAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (20 bp):
TTATATATATAATTGTAATA
Found at i:33646603 original size:3 final size:3
Alignment explanation
Indices: 33646595--33646620 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
33646585 CCAAAATCCT
33646595 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
33646621 GCCATGGCAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:33664162 original size:22 final size:22
Alignment explanation
Indices: 33664136--33664177 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
33664126 AAAATTACCT
33664136 TTTCTTTTCTTTCT-TCTTCTCC
1 TTTC-TTTCTTTCTATCTTCTCC
33664158 TTTCTTTCTTTCTATCTTCT
1 TTTCTTTCTTTCTATCTTCT
33664178 TCTTCTGTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.02, C:0.29, G:0.00, T:0.69
Consensus pattern (22 bp):
TTTCTTTCTTTCTATCTTCTCC
Found at i:33664762 original size:17 final size:18
Alignment explanation
Indices: 33664740--33664782 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 18
33664730 CTCACATTTA
*
33664740 TATTTTTTA-TTTTATAT
1 TATTTTTAAGTTTTATAT
*
33664757 TA-TTTTAAGTTTTTTAT
1 TATTTTTAAGTTTTATAT
33664774 TATTTTTAA
1 TATTTTTAA
33664783 TTAATGTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 5 0.23
17 11 0.50
18 6 0.27
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (18 bp):
TATTTTTAAGTTTTATAT
Found at i:33669083 original size:27 final size:26
Alignment explanation
Indices: 33669045--33669155 Score: 118
Period size: 27 Copynumber: 4.1 Consensus size: 26
33669035 AAGCGTCCTA
33669045 GTGGCTATGCCACAATTATCTAATCTG
1 GTGGCTATGCCACAATTATCT-ATCTG
* *
33669072 GTGGCTCTGCCAC-ATATATCTGTCCTG
1 GTGGCTATGCCACAAT-TATCTAT-CTG
*
33669099 GTGGCTATGCCATAATTATCTGATCTG
1 GTGGCTATGCCACAATTATCT-ATCTG
*
33669126 GTGGCTCTGCCACAA-TATCTGTATCTG
1 GTGGCTATGCCACAATTATC--TATCTG
33669153 GTG
1 GTG
33669156 ACTTCGTCAC
Statistics
Matches: 71, Mismatches: 7, Indels: 12
0.79 0.08 0.13
Matches are distributed among these distances:
26 7 0.10
27 60 0.85
28 4 0.06
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (26 bp):
GTGGCTATGCCACAATTATCTATCTG
Found at i:33669155 original size:54 final size:54
Alignment explanation
Indices: 33669039--33669147 Score: 184
Period size: 54 Copynumber: 2.0 Consensus size: 54
33669029 TGGAGGAAGC
*
33669039 GTCCTAGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCT
* *
33669093 GTCCTGGTGGCTATGCCATAATTATCTGATCTGGTGGCTCTGCCACA-ATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCT
33669146 GT
1 GT
33669148 ATCTGGTGAC
Statistics
Matches: 52, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
53 8 0.15
54 44 0.85
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCT
Found at i:33669166 original size:27 final size:26
Alignment explanation
Indices: 33669052--33669173 Score: 113
Period size: 27 Copynumber: 4.5 Consensus size: 26
33669042 CTAGTGGCTA
* *
33669052 TGCCACAATTATCTAATCTGGTGGCTC
1 TGCCACAA-TATCTGATCTGGTGACTC
* *
33669079 TGCCACATATATCTG-TCCTGGTGGCTA
1 TGCCACA-ATATCTGAT-CTGGTGACTC
* *
33669106 TGCCATAATTATCTGATCTGGTGGCTC
1 TGCCACAA-TATCTGATCTGGTGACTC
33669133 TGCCACAATATCTGTATCTGGTGACT-
1 TGCCACAATATCTG-ATCTGGTGACTC
*
33669159 TCGTCACAATATCTG
1 T-GCCACAATATCTG
33669174 GCGACTTCGT
Statistics
Matches: 82, Mismatches: 7, Indels: 12
0.81 0.07 0.12
Matches are distributed among these distances:
26 9 0.11
27 71 0.87
28 2 0.02
ACGTcount: A:0.21, C:0.25, G:0.20, T:0.34
Consensus pattern (26 bp):
TGCCACAATATCTGATCTGGTGACTC
Found at i:33669171 original size:21 final size:21
Alignment explanation
Indices: 33669147--33669196 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
33669137 ACAATATCTG
*
33669147 TATCTGGTGACTTCGTCACAA
1 TATCTGGCGACTTCGTCACAA
33669168 TATCTGGCGACTTCGTCACAA
1 TATCTGGCGACTTCGTCACAA
33669189 TATCTGGC
1 TATCTGGC
33669197 AGCCTCGCTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (21 bp):
TATCTGGCGACTTCGTCACAA
Found at i:33672793 original size:12 final size:12
Alignment explanation
Indices: 33672776--33672800 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
33672766 AAAATACATT
33672776 ATTAATAAAATA
1 ATTAATAAAATA
33672788 ATTAATAAAATA
1 ATTAATAAAATA
33672800 A
1 A
33672801 CACCTGAACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
ATTAATAAAATA
Found at i:33675077 original size:20 final size:19
Alignment explanation
Indices: 33675029--33675080 Score: 70
Period size: 18 Copynumber: 2.7 Consensus size: 19
33675019 CAAGTGTATG
*
33675029 GTAAAAATAAT-TACATGT
1 GTAAAAATAATATACATAT
33675047 GTAAAAATAATATACATAT
1 GTAAAAATAATATACATAT
*
33675066 GTATATAATAATATA
1 GTA-AAAATAATATA
33675081 TGTAATACTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
18 11 0.37
19 9 0.30
20 10 0.33
ACGTcount: A:0.54, C:0.04, G:0.08, T:0.35
Consensus pattern (19 bp):
GTAAAAATAATATACATAT
Found at i:33675192 original size:6 final size:6
Alignment explanation
Indices: 33675163--33675200 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
33675153 AATAAATAAA
* *
33675163 AGAAAT -GAAAT AGAAAA AGGAAT AGAAAT AGAAAT AGA
1 AGAAAT AGAAAT AGAAAT AGAAAT AGAAAT AGAAAT AGA
33675201 GAAGTAAAAC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
5 5 0.19
6 22 0.81
ACGTcount: A:0.66, C:0.00, G:0.21, T:0.13
Consensus pattern (6 bp):
AGAAAT
Found at i:33675497 original size:24 final size:24
Alignment explanation
Indices: 33675453--33675499 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
33675443 TTGAAATAGA
33675453 ATTGATTTAGTATGTGATGAATTT
1 ATTGATTTAGTATGTGATGAATTT
33675477 ATTGAATTTA-TAT-TGATTGAATT
1 ATTG-ATTTAGTATGTGA-TGAATT
33675500 AATATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 3 0.14
24 13 0.62
25 5 0.24
ACGTcount: A:0.32, C:0.00, G:0.17, T:0.51
Consensus pattern (24 bp):
ATTGATTTAGTATGTGATGAATTT
Found at i:33676810 original size:19 final size:20
Alignment explanation
Indices: 33676773--33676819 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
33676763 TTAGCACAGA
33676773 ATGAGAAAGTTGATAAGATG
1 ATGAGAAAGTTGATAAGATG
*
33676793 ATGAGAGAAG-TG-TAAGATT
1 ATGAGA-AAGTTGATAAGATG
33676812 AT-AGAAAG
1 ATGAGAAAG
33676820 AAACCAGAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
17 3 0.12
18 3 0.12
19 8 0.32
20 8 0.32
21 3 0.12
ACGTcount: A:0.47, C:0.00, G:0.30, T:0.23
Consensus pattern (20 bp):
ATGAGAAAGTTGATAAGATG
Found at i:33690468 original size:23 final size:22
Alignment explanation
Indices: 33690425--33690468 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
33690415 TAACCTTTAT
* *
33690425 TTAATGAATTACATTTTTAACC
1 TTAATGAATAACATTTATAACC
33690447 TTAATGAATAAACATTTATAAC
1 TTAATGAAT-AACATTTATAAC
33690469 ATCCATTTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.43, C:0.11, G:0.05, T:0.41
Consensus pattern (22 bp):
TTAATGAATAACATTTATAACC
Found at i:33690972 original size:20 final size:19
Alignment explanation
Indices: 33690924--33690975 Score: 70
Period size: 18 Copynumber: 2.7 Consensus size: 19
33690914 CAAGTGTATG
*
33690924 GTAAAAATAAT-TACATGT
1 GTAAAAATAATATACATAT
33690942 GTAAAAATAATATACATAT
1 GTAAAAATAATATACATAT
*
33690961 GTATATAATAATATA
1 GTA-AAAATAATATA
33690976 TGTAATACTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
18 11 0.37
19 9 0.30
20 10 0.33
ACGTcount: A:0.54, C:0.04, G:0.08, T:0.35
Consensus pattern (19 bp):
GTAAAAATAATATACATAT
Found at i:33691008 original size:5 final size:5
Alignment explanation
Indices: 33690998--33691051 Score: 90
Period size: 5 Copynumber: 10.8 Consensus size: 5
33690988 TATTTAAATA
* *
33690998 TATAT TATAT TATAT TGTAT TGTAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
33691048 TATA
1 TATA
33691052 AAAAGAGTAA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 47 1.00
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (5 bp):
TATAT
Found at i:33691087 original size:18 final size:18
Alignment explanation
Indices: 33691064--33691104 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
33691054 AAGAGTAAAC
33691064 AAATAAATAAAAGAAAT-G
1 AAATAAA-AAAAGAAATAG
*
33691082 AAATAAAAAAAGGAATAG
1 AAATAAAAAAAGAAATAG
33691100 AAATA
1 AAATA
33691105 GAGAAGTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.73, C:0.00, G:0.12, T:0.15
Consensus pattern (18 bp):
AAATAAAAAAAGAAATAG
Found at i:33691143 original size:21 final size:21
Alignment explanation
Indices: 33691118--33691163 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
33691108 AAGTAAAACG
33691118 AAAGA-AAAAAAAAAGAAGGAA
1 AAAGAGAAAAAAAAAGAA-GAA
* *
33691139 AAAGAGAAAGAAAAAGGAGAA
1 AAAGAGAAAAAAAAAGAAGAA
33691160 AAAG
1 AAAG
33691164 CTAGAGTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 12 0.55
22 10 0.45
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (21 bp):
AAAGAGAAAAAAAAAGAAGAA
Found at i:33691145 original size:37 final size:40
Alignment explanation
Indices: 33691071--33691146 Score: 97
Period size: 37 Copynumber: 2.0 Consensus size: 40
33691061 AACAAATAAA
*
33691071 TAAAAGAAATGAAATAAAAAAAGGAATAGAAATAGAGAAG
1 TAAAAGAAATGAAATAAAAAAAGGAATAGAAAAAGAGAAG
*
33691111 TAAAACGAAA-GAAA-AAAAAAA-GAA-GGAAAAAGAGAA
1 TAAAA-GAAATGAAATAAAAAAAGGAATAGAAAAAGAGAA
33691147 AGAAAAAGGA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
37 10 0.30
38 3 0.09
39 7 0.21
40 9 0.27
41 4 0.12
ACGTcount: A:0.71, C:0.01, G:0.20, T:0.08
Consensus pattern (40 bp):
TAAAAGAAATGAAATAAAAAAAGGAATAGAAAAAGAGAAG
Found at i:33691162 original size:22 final size:21
Alignment explanation
Indices: 33691118--33691162 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
33691108 AAGTAAAACG
*
33691118 AAAGAAAAAAAAAAGAAGGAA
1 AAAGAAAAAAAAAAGAAGAAA
* *
33691139 AAAGAGAAAGAAAAAGGAGAAA
1 AAAGA-AAAAAAAAAGAAGAAA
33691161 AA
1 AA
33691163 GCTAGAGTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (21 bp):
AAAGAAAAAAAAAAGAAGAAA
Found at i:33691397 original size:24 final size:24
Alignment explanation
Indices: 33691370--33691416 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
33691360 TTGAAATGGA
33691370 ATTG-ATTTAGTATATGA-TGAATTC
1 ATTGAATTTA-TAT-TGATTGAATTC
33691394 ATTGAATTTATATTGATTGAATT
1 ATTGAATTTATATTGATTGAATT
33691417 GATATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 3 0.14
24 13 0.62
25 5 0.24
ACGTcount: A:0.34, C:0.02, G:0.15, T:0.49
Consensus pattern (24 bp):
ATTGAATTTATATTGATTGAATTC
Found at i:33691627 original size:41 final size:40
Alignment explanation
Indices: 33691581--33691709 Score: 115
Period size: 37 Copynumber: 3.3 Consensus size: 40
33691571 ACTTCGAGTT
*
33691581 GATGAGGCATTGGATGTCAATTTACTATTTCGGATTAGTTC
1 GATGAGGCATTGG-TGTCAATTTACTATTTCGGATTAGTCC
* * *
33691622 GATGAGACATTGGGTGTCAAATTAC--TTT-GGTTTAG-CC
1 GATGAGGCATT-GGTGTCAATTTACTATTTCGGATTAGTCC
* * * **
33691659 GATGAGGCACTAGGTGTCAATTTATTACTTCAAATTA-TCC
1 GATGAGGCA-TTGGTGTCAATTTACTATTTCGGATTAGTCC
33691699 GATGAGGCATT
1 GATGAGGCATT
33691710 AAGTGCCAAA
Statistics
Matches: 69, Mismatches: 13, Indels: 14
0.72 0.14 0.15
Matches are distributed among these distances:
37 20 0.29
38 7 0.10
39 6 0.09
40 14 0.20
41 20 0.29
42 2 0.03
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.36
Consensus pattern (40 bp):
GATGAGGCATTGGTGTCAATTTACTATTTCGGATTAGTCC
Found at i:33696983 original size:22 final size:22
Alignment explanation
Indices: 33696958--33697008 Score: 57
Period size: 24 Copynumber: 2.2 Consensus size: 22
33696948 AGGCTAACAA
* *
33696958 AATACCACAAATGCCTAATCAG
1 AATACCACAAAAGCCAAATCAG
*
33696980 AATACACCATAAAAGCCAAATCAG
1 AAT--ACCACAAAAGCCAAATCAG
33697004 AATAC
1 AATAC
33697009 GCAACATAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
22 5 0.21
24 19 0.79
ACGTcount: A:0.51, C:0.25, G:0.08, T:0.16
Consensus pattern (22 bp):
AATACCACAAAAGCCAAATCAG
Found at i:33699533 original size:17 final size:17
Alignment explanation
Indices: 33699511--33699544 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
33699501 GAACTATGTT
33699511 ATTGAGAATACGAAAGA
1 ATTGAGAATACGAAAGA
33699528 ATTGAGAATACGAAAGA
1 ATTGAGAATACGAAAGA
33699545 GAAAATGTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.06, G:0.24, T:0.18
Consensus pattern (17 bp):
ATTGAGAATACGAAAGA
Found at i:33700381 original size:66 final size:66
Alignment explanation
Indices: 33700299--33700430 Score: 246
Period size: 66 Copynumber: 2.0 Consensus size: 66
33700289 AGTGGGAATG
**
33700299 GTCATAAATGGGCATATATTATGATGATTTTAAATGGTTTTGTAAAGGTTAAATATGTAATTTGG
1 GTCATAAATGGGCATATATTATGATGATTTTAAATGGTTTAATAAAGGTTAAATATGTAATTTGG
33700364 T
66 T
33700365 GTCATAAATGGGCATATATTATGATGATTTTAAATGGTTTAATAAAGGTTAAATATGTAATTTGG
1 GTCATAAATGGGCATATATTATGATGATTTTAAATGGTTTAATAAAGGTTAAATATGTAATTTGG
33700430 T
66 T
33700431 ATAAATAAAC
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 64 1.00
ACGTcount: A:0.35, C:0.03, G:0.20, T:0.42
Consensus pattern (66 bp):
GTCATAAATGGGCATATATTATGATGATTTTAAATGGTTTAATAAAGGTTAAATATGTAATTTGG
T
Found at i:33701417 original size:47 final size:47
Alignment explanation
Indices: 33701364--33701474 Score: 150
Period size: 47 Copynumber: 2.4 Consensus size: 47
33701354 GTGTGAATAA
* * *
33701364 TACCTTGATTTGGCTACGGGTCATGGCATAGGTATTCAGAGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGGCATAGGTACTCAGAGAGAAGT
* * * *
33701411 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCGGGATAAGT
1 TACCTTGATTTGGCTACGGGCCATGGCATAGGTACTCAGAGAGAAGT
*
33701458 TACCTTGGTTTGGCTAC
1 TACCTTGATTTGGCTAC
33701475 AAGACCTGGT
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 56 1.00
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.32
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGGCATAGGTACTCAGAGAGAAGT
Found at i:33711618 original size:18 final size:19
Alignment explanation
Indices: 33711582--33711620 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
33711572 GTAACCCCTG
* *
33711582 TTTCCCAAATTTTCATGTT
1 TTTCCAAAATTATCATGTT
33711601 TTTCCAAAATTATC-TGTT
1 TTTCCAAAATTATCATGTT
33711619 TT
1 TT
33711621 GTTTCAAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.23, C:0.18, G:0.05, T:0.54
Consensus pattern (19 bp):
TTTCCAAAATTATCATGTT
Found at i:33720262 original size:22 final size:23
Alignment explanation
Indices: 33720226--33720272 Score: 78
Period size: 22 Copynumber: 2.1 Consensus size: 23
33720216 ACAAAGTTAT
33720226 TAATTAAAAAGATTTAAAAAGAA
1 TAATTAAAAAGATTTAAAAAGAA
*
33720249 TAATTAAAAA-ATTTAAAAATAA
1 TAATTAAAAAGATTTAAAAAGAA
33720271 TA
1 TA
33720273 TATTCATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 13 0.57
23 10 0.43
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (23 bp):
TAATTAAAAAGATTTAAAAAGAA
Found at i:33721050 original size:89 final size:90
Alignment explanation
Indices: 33720889--33721058 Score: 202
Period size: 89 Copynumber: 1.9 Consensus size: 90
33720879 TGAGTCTCTC
* *
33720889 TTTTTTTTTTACACTTAATTAAGTATTTGAACTTTTAAAATGCATAAAAAAGGCCCTCAAACTTT
1 TTTTTTTTTTACACTCAATTAAGTACTTGAACTTTTAAAATGCATAAAAAAGGCCCTCAAACTTT
***
33720954 TTCAAAAAA-AATTAAGCCCTTGTT
66 AAAAAAAAATAATTAAGCCCTTGTT
* * * * * *
33720978 TTTTTTTTTTGCACTCAATT-GGATACTTGAA-TTGTTAAAATGTATCAAAAAGGTCCTTAAACT
1 TTTTTTTTTTACACTCAATTAAG-TACTTGAACTT-TTAAAATGCATAAAAAAGGCCCTCAAACT
33721041 TTAAAAAAAAATAATTAA
64 TTAAAAAAAAATAATTAA
33721059 ACAATTTTTT
Statistics
Matches: 67, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
88 3 0.04
89 58 0.87
90 6 0.09
ACGTcount: A:0.39, C:0.12, G:0.09, T:0.40
Consensus pattern (90 bp):
TTTTTTTTTTACACTCAATTAAGTACTTGAACTTTTAAAATGCATAAAAAAGGCCCTCAAACTTT
AAAAAAAAATAATTAAGCCCTTGTT
Found at i:33721208 original size:19 final size:19
Alignment explanation
Indices: 33721183--33721233 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
33721173 AAAATATAAA
33721183 AATAAAAATCAATAAAATTT
1 AATAAAAAT-AATAAAATTT
* *
33721203 -ATAAAAATATTAAATTTT
1 AATAAAAATAATAAAATTT
*
33721221 AATAAAAAAAATA
1 AATAAAAATAATA
33721234 TAAAAATTAG
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
18 8 0.31
19 18 0.69
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (19 bp):
AATAAAAATAATAAAATTT
Found at i:33721216 original size:18 final size:19
Alignment explanation
Indices: 33721184--33721314 Score: 83
Period size: 18 Copynumber: 6.9 Consensus size: 19
33721174 AAATATAAAA
*
33721184 ATAAAAATCA-ATAAAATTT
1 ATAAAAAT-ATATAAAAATT
**
33721203 ATAAAAATAT-TAAATTTT
1 ATAAAAATATATAAAAATT
*
33721221 AATAAAAAAAATATAAAAATT
1 -AT-AAAAATATATAAAAATT
* *
33721242 AGAAAAA-ATATAAAAAAT
1 ATAAAAATATATAAAAATT
* * **
33721260 ATAAAAGTGTA-AAATTTT
1 ATAAAAATATATAAAAATT
*
33721278 ATAAAAATCATAAAAAAATT
1 ATAAAAAT-ATATAAAAATT
*
33721298 AT-AAAATATATAGAAAT
1 ATAAAAATATATAAAAAT
33721315 ATAGAAAAGA
Statistics
Matches: 87, Mismatches: 18, Indels: 15
0.73 0.15 0.12
Matches are distributed among these distances:
18 42 0.48
19 24 0.28
20 15 0.17
21 6 0.07
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.30
Consensus pattern (19 bp):
ATAAAAATATATAAAAATT
Found at i:33721303 original size:9 final size:9
Alignment explanation
Indices: 33721226--33721303 Score: 50
Period size: 9 Copynumber: 8.4 Consensus size: 9
33721216 ATTTTAATAA
*
33721226 AAAAAATAT
1 AAAAATTAT
*
33721235 AAAAATTAG
1 AAAAATTAT
*
33721244 AAAAAATAT
1 AAAAATTAT
*
33721253 AAAAAATAT
1 AAAAATTAT
*
33721262 AAAAGTGTA-
1 AAAAAT-TAT
**
33721271 AAATTTTAT
1 AAAAATTAT
*
33721280 AAAAATCATAA
1 AAAAAT--TAT
33721291 AAAAATTAT
1 AAAAATTAT
33721300 AAAA
1 AAAA
33721304 TATATAGAAA
Statistics
Matches: 53, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
8 2 0.04
9 41 0.77
10 2 0.04
11 8 0.15
ACGTcount: A:0.69, C:0.01, G:0.04, T:0.26
Consensus pattern (9 bp):
AAAAATTAT
Found at i:33721309 original size:56 final size:58
Alignment explanation
Indices: 33721214--33721323 Score: 143
Period size: 56 Copynumber: 1.9 Consensus size: 58
33721204 TAAAAATATT
* *
33721214 AAATTTTAATAAAAAAAATATAAAAATTAGAAAAAATATA-AAAAATATAAAAGTGTA
1 AAATTTTAATAAAAAAAATAAAAAAATTAGAAAAAATATAGAAAAATAGAAAAGTGTA
** * * *
33721271 AAATTTT-ATAAAAATCATAAAAAAATTATAAAATATATAGAAATATAGAAAAG
1 AAATTTTAATAAAAAAAATAAAAAAATTAGAAAAAATATAGAAAAATAGAAAAG
33721324 AAATTTACTA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
56 27 0.60
57 18 0.40
ACGTcount: A:0.66, C:0.01, G:0.05, T:0.27
Consensus pattern (58 bp):
AAATTTTAATAAAAAAAATAAAAAAATTAGAAAAAATATAGAAAAATAGAAAAGTGTA
Found at i:33722960 original size:15 final size:14
Alignment explanation
Indices: 33722930--33722956 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
33722920 GACATGTATT
33722930 TTTTTAAATATTTA
1 TTTTTAAATATTTA
33722944 TTTTTAAATATTT
1 TTTTTAAATATTT
33722957 TATTATATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
TTTTTAAATATTTA
Found at i:33723295 original size:3 final size:3
Alignment explanation
Indices: 33723287--33723323 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
33723277 AGCTATGTCG
33723287 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
33723324 TTTCATTTTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:33724351 original size:3 final size:3
Alignment explanation
Indices: 33724338--33724368 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
33724328 GGTTAAACTT
*
33724338 TTA TAA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
33724369 AAATAGACTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:33728183 original size:21 final size:21
Alignment explanation
Indices: 33728157--33728199 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
33728147 GTGGAAGAAG
33728157 GATCTCGAAACTTTTCTACAA
1 GATCTCGAAACTTTTCTACAA
33728178 GATCTCGAAACTTTTCTACAA
1 GATCTCGAAACTTTTCTACAA
33728199 G
1 G
33728200 TTTTCAGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.23, G:0.12, T:0.33
Consensus pattern (21 bp):
GATCTCGAAACTTTTCTACAA
Found at i:33730762 original size:48 final size:48
Alignment explanation
Indices: 33730702--33730794 Score: 159
Period size: 48 Copynumber: 1.9 Consensus size: 48
33730692 CCAATGTACC
* *
33730702 TAATTTGTATTACAAAGTTTGTTCCAAGTTTTAATTTTGTAATGTATT
1 TAATTTATATTACAAAGTTTGTTCCAAGTTTTAATGTTGTAATGTATT
*
33730750 TAATTTATATTACAAAGTTTGTTTCAAGTTTTAATGTTGTAATGT
1 TAATTTATATTACAAAGTTTGTTCCAAGTTTTAATGTTGTAATGT
33730795 TATAATGTTG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.30, C:0.05, G:0.13, T:0.52
Consensus pattern (48 bp):
TAATTTATATTACAAAGTTTGTTCCAAGTTTTAATGTTGTAATGTATT
Found at i:33731208 original size:33 final size:33
Alignment explanation
Indices: 33731161--33731235 Score: 96
Period size: 33 Copynumber: 2.3 Consensus size: 33
33731151 GATACGAACA
* *
33731161 AGAGGAGTGAAGTAATATGGTAGATATGGGCCG
1 AGAGGAGTGAAGTAATATGGTAGATACGGGCAG
* * * *
33731194 AGAGAAGTGGAGTAATGTGGTGGATACGGGCAG
1 AGAGGAGTGAAGTAATATGGTAGATACGGGCAG
33731227 AGAGGAGTG
1 AGAGGAGTG
33731236 CTGTACTACT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.32, C:0.05, G:0.44, T:0.19
Consensus pattern (33 bp):
AGAGGAGTGAAGTAATATGGTAGATACGGGCAG
Found at i:33733700 original size:16 final size:16
Alignment explanation
Indices: 33733681--33733751 Score: 56
Period size: 16 Copynumber: 4.4 Consensus size: 16
33733671 ATAACATGCC
33733681 AAATAAATTACATAAA
1 AAATAAATTACATAAA
*
33733697 AAATAAATCTA-AT-CA
1 AAATAAAT-TACATAAA
** ** *
33733712 ACCTAAAACACATAAC
1 AAATAAATTACATAAA
33733728 AAATAAATTACATAAAA
1 AAATAAATTACAT-AAA
33733745 AAATAAA
1 AAATAAA
33733752 ACATTATTTG
Statistics
Matches: 39, Mismatches: 12, Indels: 7
0.67 0.21 0.12
Matches are distributed among these distances:
14 1 0.03
15 8 0.21
16 19 0.49
17 11 0.28
ACGTcount: A:0.66, C:0.13, G:0.00, T:0.21
Consensus pattern (16 bp):
AAATAAATTACATAAA
Found at i:33734085 original size:26 final size:27
Alignment explanation
Indices: 33734054--33734108 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 27
33734044 TTCTCCTTCC
*
33734054 CTCTCTCGATTTTGCTTCT-TTTTTTT
1 CTCTCTCGATTTTGCTTATCTTTTTTT
*
33734080 CTCTCTCTATTTTGCTTATCTTTTTTT
1 CTCTCTCGATTTTGCTTATCTTTTTTT
33734107 CT
1 CT
33734109 TTCTTTTTCC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 17 0.65
27 9 0.35
ACGTcount: A:0.05, C:0.24, G:0.05, T:0.65
Consensus pattern (27 bp):
CTCTCTCGATTTTGCTTATCTTTTTTT
Found at i:33734973 original size:23 final size:23
Alignment explanation
Indices: 33734925--33734973 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
33734915 CAAAACAGAA
*
33734925 TTTTGTCTGCCTAAGTGCATGGT
1 TTTTGTCTGCCTAAGTGCATGAT
* *
33734948 TTTTGTCTGCCTATGTGCATTAT
1 TTTTGTCTGCCTAAGTGCATGAT
33734971 TTT
1 TTT
33734974 GTGCTCACTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.12, C:0.16, G:0.20, T:0.51
Consensus pattern (23 bp):
TTTTGTCTGCCTAAGTGCATGAT
Found at i:33735206 original size:43 final size:43
Alignment explanation
Indices: 33735159--33735395 Score: 307
Period size: 43 Copynumber: 5.5 Consensus size: 43
33735149 AAAAAGTACA
*
33735159 GCTAAAAGTCATGGCCTTTAGTGGC-TCTTGTAGGAGAAGCGCC
1 GCTAAAAGTCATGGCCTTTAGTGGCAT-TTGTGGGAGAAGCGCC
*
33735202 GCTAAAAGTCATGACCTTTAGCT-GCATTTGTGGGAGAAGCGCC
1 GCTAAAAGTCATGGCCTTTAG-TGGCATTTGTGGGAGAAGCGCC
* * * * *
33735245 ACTAAAAGTCATAGCCTTTAGCGGCGTTTGTGGGAGAAGCACC
1 GCTAAAAGTCATGGCCTTTAGTGGCATTTGTGGGAGAAGCGCC
*
33735288 GCTAAAAGTCATGGCCTTTTGGTGGCATTTGTGGGAGAAGCGCC
1 GCTAAAAGTCATGGCC-TTTAGTGGCATTTGTGGGAGAAGCGCC
* * ** * *
33735332 ACTAAAAGTGATAACCTTTAGTGGGATTTGTGGGAGAAGAGCC
1 GCTAAAAGTCATGGCCTTTAGTGGCATTTGTGGGAGAAGCGCC
33735375 GCTAAAAGTCATGGCCTTTAG
1 GCTAAAAGTCATGGCCTTTAG
33735396 CGGGCTTTTA
Statistics
Matches: 165, Mismatches: 25, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
43 128 0.78
44 37 0.22
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.26
Consensus pattern (43 bp):
GCTAAAAGTCATGGCCTTTAGTGGCATTTGTGGGAGAAGCGCC
Found at i:33735351 original size:87 final size:86
Alignment explanation
Indices: 33735160--33735396 Score: 327
Period size: 87 Copynumber: 2.7 Consensus size: 86
33735150 AAAAGTACAG
** * * *
33735160 CTAAAAGTCATGGCCTTTAGTGGC-TCTTGTAGGAGAAGCGCCGCTAAAAGTCATGACCTTTAGC
1 CTAAAAGTCATAACCTTTAGTGGCGT-TTGTGGGAGAAGCACCGCTAAAAGTCATGGCCTTTAGC
33735224 TGCATTTGTGGGAGAAGCGCCA
65 TGCATTTGTGGGAGAAGCGCCA
* * * *
33735246 CTAAAAGTCATAGCCTTTAGCGGCGTTTGTGGGAGAAGCACCGCTAAAAGTCATGGCCTTTTGGT
1 CTAAAAGTCATAACCTTTAGTGGCGTTTGTGGGAGAAGCACCGCTAAAAGTCATGGCCTTTAGCT
33735311 GGCATTTGTGGGAGAAGCGCCA
66 -GCATTTGTGGGAGAAGCGCCA
*
33735333 CTAAAAGTGATAACCTTTAGTGG-GATTTGTGGGAGAAG-AGCCGCTAAAAGTCATGGCCTTTAG
1 CTAAAAGTCATAACCTTTAGTGGCG-TTTGTGGGAGAAGCA-CCGCTAAAAGTCATGGCCTTTAG
33735396 C
64 C
33735397 GGGCTTTTAT
Statistics
Matches: 135, Mismatches: 12, Indels: 7
0.88 0.08 0.05
Matches are distributed among these distances:
86 58 0.43
87 77 0.57
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (86 bp):
CTAAAAGTCATAACCTTTAGTGGCGTTTGTGGGAGAAGCACCGCTAAAAGTCATGGCCTTTAGCT
GCATTTGTGGGAGAAGCGCCA
Found at i:33735364 original size:130 final size:130
Alignment explanation
Indices: 33735131--33735398 Score: 371
Period size: 130 Copynumber: 2.1 Consensus size: 130
33735121 GATAATGACT
* *
33735131 TTTAGCAGCGTTTGTGGGAAAAAGTACAGCTAAAAGTCATGGCCTTTAGTGGCTCTTGTAGGAGA
1 TTTAGCGGCGTTTGTGGGAAAAAGCACAGCTAAAAGTCATGGCCTTTAGTGGCTCTTGTAGGAGA
* * *
33735196 AGCGCCGCTAAAAGTCATGACCTTTAGCTGCATTTGTGGGAGAAGCGCCACTAAAAGTCATAGCC
66 AGCGCCACTAAAAGTCATAACCTTTAGCTGCATTTGTGGGAGAAGAGCCACTAAAAGTCATAGCC
* * * *
33735261 TTTAGCGGCGTTTGTGGG-AGAAGCACCGCTAAAAGTCATGGCCTTTTGGTGGCAT-TTGTGGGA
1 TTTAGCGGCGTTTGTGGGAAAAAGCACAGCTAAAAGTCATGGCC-TTTAGTGGC-TCTTGTAGGA
* * * *
33735324 GAAGCGCCACTAAAAGTGATAACCTTTAG-TGGGATTTGTGGGAGAAGAGCCGCTAAAAGTCATG
64 GAAGCGCCACTAAAAGTCATAACCTTTAGCT-GCATTTGTGGGAGAAGAGCCACTAAAAGTCATA
33735388 GCC
128 GCC
33735391 TTTAGCGG
1 TTTAGCGG
33735399 GCTTTTATAA
Statistics
Matches: 122, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
129 23 0.19
130 98 0.80
131 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (130 bp):
TTTAGCGGCGTTTGTGGGAAAAAGCACAGCTAAAAGTCATGGCCTTTAGTGGCTCTTGTAGGAGA
AGCGCCACTAAAAGTCATAACCTTTAGCTGCATTTGTGGGAGAAGAGCCACTAAAAGTCATAGCC
Found at i:33735629 original size:33 final size:31
Alignment explanation
Indices: 33735513--33735609 Score: 158
Period size: 31 Copynumber: 3.1 Consensus size: 31
33735503 AACCCTTCAT
*
33735513 GCATTAAATCCAACAAAAAACAGCAAATATA
1 GCATGAAATCCAACAAAAAACAGCAAATATA
33735544 GCATGAAATCCAACAAAAAACAGCAAATATA
1 GCATGAAATCCAACAAAAAACAGCAAATATA
* * *
33735575 GCATGAAATCCAACCAAAAACAACCAATATA
1 GCATGAAATCCAACAAAAAACAGCAAATATA
33735606 GCAT
1 GCAT
33735610 AAAAAATACA
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 62 1.00
ACGTcount: A:0.56, C:0.22, G:0.08, T:0.14
Consensus pattern (31 bp):
GCATGAAATCCAACAAAAAACAGCAAATATA
Found at i:33735955 original size:33 final size:31
Alignment explanation
Indices: 33735839--33735935 Score: 167
Period size: 31 Copynumber: 3.1 Consensus size: 31
33735829 AACCCTTCCT
*
33735839 GCATTAAATCCAACAAAAAACAACAAATATA
1 GCATGAAATCCAACAAAAAACAACAAATATA
*
33735870 GCATGAAATCCAACAAAAAACAGCAAATATA
1 GCATGAAATCCAACAAAAAACAACAAATATA
*
33735901 GCATGAAATCCAACCAAAAACAACAAATATA
1 GCATGAAATCCAACAAAAAACAACAAATATA
33735932 GCAT
1 GCAT
33735936 AAAAAATACA
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 62 1.00
ACGTcount: A:0.58, C:0.21, G:0.07, T:0.14
Consensus pattern (31 bp):
GCATGAAATCCAACAAAAAACAACAAATATA
Found at i:33736047 original size:326 final size:326
Alignment explanation
Indices: 33735454--33736105 Score: 1259
Period size: 326 Copynumber: 2.0 Consensus size: 326
33735444 TTTTGTTACA
33735454 AACGCCGCTAATTTTGGCAGATTTGCAATATACATTTTCACCAATATCGAACCCTTCATGCATTA
1 AACGCCGCTAATTTTGGCAGATTTGCAATATACATTTTCACCAATATCGAACCCTTCATGCATTA
*
33735519 AATCCAACAAAAAACAGCAAATATAGCATGAAATCCAACAAAAAACAGCAAATATAGCATGAAAT
66 AATCCAACAAAAAACAACAAATATAGCATGAAATCCAACAAAAAACAGCAAATATAGCATGAAAT
*
33735584 CCAACCAAAAACAACCAATATAGCATAAAAAATACAACCAAAAACATTAAATCTAAATGATACTT
131 CCAACCAAAAACAACAAATATAGCATAAAAAATACAACCAAAAACATTAAATCTAAATGATACTT
*
33735649 CAAATTCAACGAAAGATATATGATGTAAATTAATAAATAAAGTATAACTCAAAATATTGTTACAA
196 CAAATTCAACGAAAGATATATGATGTAAATTAATAAATAAAGTATAACTCAAAATATTCTTACAA
33735714 TAATTTTAAATGTGACAATGTTAAAAATAGTCTTACAACGAGAAAACAAATGTCTAAGATGACGG
261 TAATTTTAAATGTGACAATGTTAAAAATAGTCTTACAACGAGAAAACAAATGTCTAAGATGACGG
33735779 C
326 C
*
33735780 AACGCCGCTAATTTTGGCAGATTTGCAATATACATTTTCACCAATATCGAACCCTTCCTGCATTA
1 AACGCCGCTAATTTTGGCAGATTTGCAATATACATTTTCACCAATATCGAACCCTTCATGCATTA
33735845 AATCCAACAAAAAACAACAAATATAGCATGAAATCCAACAAAAAACAGCAAATATAGCATGAAAT
66 AATCCAACAAAAAACAACAAATATAGCATGAAATCCAACAAAAAACAGCAAATATAGCATGAAAT
33735910 CCAACCAAAAACAACAAATATAGCATAAAAAATACAACCAAAAACATTAAATCTAAATGATACTT
131 CCAACCAAAAACAACAAATATAGCATAAAAAATACAACCAAAAACATTAAATCTAAATGATACTT
33735975 CAAATTCAACGAAAGATATATGATGTAAATTAATAAATAAAGTATAACTCAAAATATTCTTACAA
196 CAAATTCAACGAAAGATATATGATGTAAATTAATAAATAAAGTATAACTCAAAATATTCTTACAA
*
33736040 TAATTTTAAATGTGACAATGTTAAAAATAGTCTTACAATGAGAAAACAAATGTCTAAGATGACGG
261 TAATTTTAAATGTGACAATGTTAAAAATAGTCTTACAACGAGAAAACAAATGTCTAAGATGACGG
33736105 C
326 C
33736106 TTTTGCGACT
Statistics
Matches: 321, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
326 321 1.00
ACGTcount: A:0.49, C:0.17, G:0.10, T:0.24
Consensus pattern (326 bp):
AACGCCGCTAATTTTGGCAGATTTGCAATATACATTTTCACCAATATCGAACCCTTCATGCATTA
AATCCAACAAAAAACAACAAATATAGCATGAAATCCAACAAAAAACAGCAAATATAGCATGAAAT
CCAACCAAAAACAACAAATATAGCATAAAAAATACAACCAAAAACATTAAATCTAAATGATACTT
CAAATTCAACGAAAGATATATGATGTAAATTAATAAATAAAGTATAACTCAAAATATTCTTACAA
TAATTTTAAATGTGACAATGTTAAAAATAGTCTTACAACGAGAAAACAAATGTCTAAGATGACGG
C
Found at i:33736213 original size:21 final size:21
Alignment explanation
Indices: 33736189--33736236 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
33736179 CTTTGCCATC
*
33736189 GCTGTTGCCTCTGACTCTCTT
1 GCTGCTGCCTCTGACTCTCTT
* *
33736210 GCTGCTGCCTCTGCCTCTTTT
1 GCTGCTGCCTCTGACTCTCTT
33736231 GCTGCT
1 GCTGCT
33736237 ACTGCTGCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.02, C:0.35, G:0.21, T:0.42
Consensus pattern (21 bp):
GCTGCTGCCTCTGACTCTCTT
Found at i:33736244 original size:21 final size:21
Alignment explanation
Indices: 33736197--33736247 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
33736187 TCGCTGTTGC
* *
33736197 CTCTGACTCTCTTGCTGCTGC
1 CTCTGCCTCTCTTGCTGCTGA
*
33736218 CTCTGCCTCTTTTGCTGCT-A
1 CTCTGCCTCTCTTGCTGCTGA
33736238 CTGCTGCCTC
1 CT-CTGCCTC
33736248 CCTCGCAGCT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 2 0.08
21 24 0.92
ACGTcount: A:0.04, C:0.39, G:0.18, T:0.39
Consensus pattern (21 bp):
CTCTGCCTCTCTTGCTGCTGA
Found at i:33740010 original size:12 final size:12
Alignment explanation
Indices: 33739995--33740020 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
33739985 ATCATCCTCT
33739995 TCATCATATTCA
1 TCATCATATTCA
33740007 TCATCATATTCA
1 TCATCATATTCA
33740019 TC
1 TC
33740021 CCTCGATCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.27, G:0.00, T:0.42
Consensus pattern (12 bp):
TCATCATATTCA
Found at i:33741753 original size:9 final size:9
Alignment explanation
Indices: 33741739--33741860 Score: 74
Period size: 9 Copynumber: 13.7 Consensus size: 9
33741729 TAAGTATAAT
33741739 TAAGTTATG
1 TAAGTTATG
33741748 TAAGTTATG
1 TAAGTTATG
* * *
33741757 ATATGATATA
1 -TAAGTTATG
*
33741767 T-ATTTATG
1 TAAGTTATG
33741775 T-A-TTATG
1 TAAGTTATG
33741782 TAAGTTATG
1 TAAGTTATG
*
33741791 TAAATTATG
1 TAAGTTATG
33741800 TAAGTTATG
1 TAAGTTATG
* * *
33741809 AAATTTGAACTC
1 TAAGTT--A-TG
*
33741821 TAAATTATG
1 TAAGTTATG
33741830 TAAGTTATG
1 TAAGTTATG
33741839 T-A-TTATG
1 TAAGTTATG
*
33741846 TAAATTATG
1 TAAGTTATG
*
33741855 TGAGTT
1 TAAGTT
33741861 GCTAGTGAAC
Statistics
Matches: 87, Mismatches: 18, Indels: 16
0.72 0.15 0.13
Matches are distributed among these distances:
7 12 0.14
8 8 0.09
9 54 0.62
10 7 0.08
11 1 0.01
12 5 0.06
ACGTcount: A:0.36, C:0.02, G:0.16, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:33745636 original size:120 final size:120
Alignment explanation
Indices: 33745480--33745735 Score: 458
Period size: 120 Copynumber: 2.1 Consensus size: 120
33745470 TTACTCAACA
*
33745480 CTTTTGCGGCGTTTTTAGATAAGTGCCGCTAATGCTTGACCTATAGCGGTGTTTTTCAAGAAACG
1 CTTTTGCGGCGTTTTTAGATAAGTGCCGCTAATGCTTGACCTATAGCAGTGTTTTTCAAGAAACG
* *
33745545 TCGCTAATGCTTGATCATTTGCGACATTTGTTACATAAGCGCCGTTAATAGTGAT
66 TCACTAATGCTTGATCATTTACGACATTTGTTACATAAGCGCCGTTAATAGTGAT
*
33745600 CTTTTGCGGCGTTTTTAGATAAGTGCCGCTAATGCTTGACCTATAGCATTGTTTTTCAAGAAACG
1 CTTTTGCGGCGTTTTTAGATAAGTGCCGCTAATGCTTGACCTATAGCAGTGTTTTTCAAGAAACG
* *
33745665 TCACTAATGCTTGATCATTTACGGCGTTTGTTACATAAGCGCCGTTAATAGTGAT
66 TCACTAATGCTTGATCATTTACGACATTTGTTACATAAGCGCCGTTAATAGTGAT
33745720 CTTTTGCGGCGTTTTT
1 CTTTTGCGGCGTTTTT
33745736 TTCACAAGTG
Statistics
Matches: 130, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
120 130 1.00
ACGTcount: A:0.22, C:0.18, G:0.22, T:0.38
Consensus pattern (120 bp):
CTTTTGCGGCGTTTTTAGATAAGTGCCGCTAATGCTTGACCTATAGCAGTGTTTTTCAAGAAACG
TCACTAATGCTTGATCATTTACGACATTTGTTACATAAGCGCCGTTAATAGTGAT
Found at i:33747790 original size:14 final size:13
Alignment explanation
Indices: 33747770--33747830 Score: 62
Period size: 10 Copynumber: 5.0 Consensus size: 13
33747760 AAAATACAGC
33747770 ACTATGTGTGCGA
1 ACTATGTGTGCGA
33747783 AGCTATGTG-GC--
1 A-CTATGTGTGCGA
33747794 ACTATGTGTGCGA
1 ACTATGTGTGCGA
33747807 AGCTATGTG-GC--
1 A-CTATGTGTGCGA
33747818 ACTATGTGTGCGA
1 ACTATGTGTGCGA
33747831 GAAAACATTG
Statistics
Matches: 40, Mismatches: 0, Indels: 16
0.71 0.00 0.29
Matches are distributed among these distances:
10 14 0.35
11 6 0.15
13 6 0.15
14 14 0.35
ACGTcount: A:0.21, C:0.16, G:0.33, T:0.30
Consensus pattern (13 bp):
ACTATGTGTGCGA
Found at i:33747800 original size:24 final size:24
Alignment explanation
Indices: 33747768--33747830 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
33747758 AGAAAATACA
33747768 GCACTATGTGTGCGAAGCTATGTG
1 GCACTATGTGTGCGAAGCTATGTG
33747792 GCACTATGTGTGCGAAGCTATGTG
1 GCACTATGTGTGCGAAGCTATGTG
33747816 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
33747831 GAAAACATTG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (24 bp):
GCACTATGTGTGCGAAGCTATGTG
Found at i:33754138 original size:266 final size:266
Alignment explanation
Indices: 33753664--33754197 Score: 1059
Period size: 266 Copynumber: 2.0 Consensus size: 266
33753654 AATTGCATAT
33753664 ATTTATGTGTGATAGTGTATGTGTGAAAAAAAAATAAATGCTTAAAATTAGCCTTAGGAATGTGA
1 ATTTATGTGTGATAGTGTATGTGTGAAAAAAAAATAAATGCTTAAAATTAGCCTTAGGAATGTGA
33753729 ATTTTCTTGAAAAGACTTAGTTGAGAAATTTAGAAAAGATGATAGGTAAATTGTAAGGATTAAAT
66 ATTTTCTTGAAAAGACTTAGTTGAGAAATTTAGAAAAGATGATAGGTAAATTGTAAGGATTAAAT
33753794 AACAATAAGGTGAGAAAGCATGGATTTGCATGTCAAAATGCCCATTTTTGCACTAAGTGGCCAGC
131 AACAATAAGGTGAGAAAGCATGGATTTGCATGTCAAAATGCCCATTTTTGCACTAAGTGGCCAGC
33753859 CAAGTAATGATGCCCTTCCACTAATTTAAATTAATTTGTATATTAAATTGGCAAAGGAATAAAAT
196 CAAGTAATGATGCCCTTCCACTAATTTAAATTAATTTGTATATTAAATTGGCAAAGGAATAAAAT
33753924 ATTCAA
261 ATTCAA
33753930 ATTTATGTGTGATAGTGTATGTGTGAAAAAAAAATAAATGCTTAAAATTAGCCTTAGGAATGTGA
1 ATTTATGTGTGATAGTGTATGTGTGAAAAAAAAATAAATGCTTAAAATTAGCCTTAGGAATGTGA
*
33753995 ATTTTCTTGAAAAGACTTAGTTGAGAAATTTAGAAAAGATGATATGTAAATTGTAAGGATTAAAT
66 ATTTTCTTGAAAAGACTTAGTTGAGAAATTTAGAAAAGATGATAGGTAAATTGTAAGGATTAAAT
33754060 AACAATAAGGTGAGAAAGCATGGATTTGCATGTCAAAATGCCCATTTTTGCACTAAGTGGCCAGC
131 AACAATAAGGTGAGAAAGCATGGATTTGCATGTCAAAATGCCCATTTTTGCACTAAGTGGCCAGC
33754125 CAAGTAATGATGCCCTTCCACTAATTTAAATTAATTTGTATATTAAATTGGCAAAGGAATAAAAT
196 CAAGTAATGATGCCCTTCCACTAATTTAAATTAATTTGTATATTAAATTGGCAAAGGAATAAAAT
33754190 ATTCAA
261 ATTCAA
33754196 AT
1 AT
33754198 CATAATGAAT
Statistics
Matches: 267, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
266 267 1.00
ACGTcount: A:0.40, C:0.10, G:0.19, T:0.32
Consensus pattern (266 bp):
ATTTATGTGTGATAGTGTATGTGTGAAAAAAAAATAAATGCTTAAAATTAGCCTTAGGAATGTGA
ATTTTCTTGAAAAGACTTAGTTGAGAAATTTAGAAAAGATGATAGGTAAATTGTAAGGATTAAAT
AACAATAAGGTGAGAAAGCATGGATTTGCATGTCAAAATGCCCATTTTTGCACTAAGTGGCCAGC
CAAGTAATGATGCCCTTCCACTAATTTAAATTAATTTGTATATTAAATTGGCAAAGGAATAAAAT
ATTCAA
Found at i:33754228 original size:21 final size:22
Alignment explanation
Indices: 33754202--33754242 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
33754192 TCAAATCATA
*
33754202 ATGAATAAAA-AAAATAAAAAT
1 ATGAATAAAAGAAAAGAAAAAT
33754223 ATGAATAAAAGAAAAGAAAA
1 ATGAATAAAAGAAAAGAAAA
33754243 GTGTTCATCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.76, C:0.00, G:0.10, T:0.15
Consensus pattern (22 bp):
ATGAATAAAAGAAAAGAAAAAT
Found at i:33758449 original size:5 final size:6
Alignment explanation
Indices: 33758434--33758459 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
33758424 AATGTATTTA
33758434 AAAAAT AAAAAT AAAAAT AAAAAT AA
1 AAAAAT AAAAAT AAAAAT AAAAAT AA
33758460 TATGTGGATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:33761252 original size:49 final size:49
Alignment explanation
Indices: 33761072--33761244 Score: 328
Period size: 49 Copynumber: 3.5 Consensus size: 49
33761062 TCAGGTCACG
*
33761072 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
*
33761121 TGTGTAATACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
33761170 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
33761219 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
33761245 TGCGTACCAG
Statistics
Matches: 121, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 121 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
Found at i:33763579 original size:13 final size:14
Alignment explanation
Indices: 33763555--33763583 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
33763545 TATTAAAGTG
33763555 ATTATCTTAATATA
1 ATTATCTTAATATA
33763569 ATTAT-TTAATATA
1 ATTATCTTAATATA
33763582 AT
1 AT
33763584 ACTTATCTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (14 bp):
ATTATCTTAATATA
Found at i:33763629 original size:39 final size:33
Alignment explanation
Indices: 33763540--33763636 Score: 101
Period size: 39 Copynumber: 2.8 Consensus size: 33
33763530 TAAAATACTG
*
33763540 TTTAATATTAAAGTGATTATCTTAATATAATTA
1 TTTAATATTAAAGTAATTATCTTAATATAATTA
*
33763573 TTTAATA-T-AA-TACTTATCTTAATAGTATTTTATTAA
1 TTTAATATTAAAGTAATTATCTTAATA-TA----ATT-A
33763609 TTTAATATTAAAGTAATTATCTTAATAT
1 TTTAATATTAAAGTAATTATCTTAATAT
33763637 TAAATTTAAT
Statistics
Matches: 52, Mismatches: 3, Indels: 13
0.76 0.04 0.19
Matches are distributed among these distances:
30 12 0.23
31 4 0.08
32 1 0.02
33 7 0.13
35 3 0.06
36 8 0.15
37 1 0.02
38 3 0.06
39 13 0.25
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.51
Consensus pattern (33 bp):
TTTAATATTAAAGTAATTATCTTAATATAATTA
Found at i:33768119 original size:22 final size:22
Alignment explanation
Indices: 33768094--33768137 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
33768084 TAGTCATATA
33768094 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
33768116 ATAATTTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
33768138 TATTTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:33768176 original size:19 final size:19
Alignment explanation
Indices: 33768154--33768209 Score: 57
Period size: 19 Copynumber: 3.2 Consensus size: 19
33768144 ATATTTCAAT
33768154 TTTATTTTAATAATAAATA
1 TTTATTTTAATAATAAATA
** *
33768173 TTTATTACAATTATAAATA
1 TTTATTTTAATAATAAATA
33768192 --TA--TTAATAATAAATA
1 TTTATTTTAATAATAAATA
33768207 TTT
1 TTT
33768210 TGTAGTATAA
Statistics
Matches: 29, Mismatches: 6, Indels: 6
0.71 0.15 0.15
Matches are distributed among these distances:
15 10 0.34
17 3 0.10
19 16 0.55
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (19 bp):
TTTATTTTAATAATAAATA
Found at i:33768205 original size:15 final size:15
Alignment explanation
Indices: 33768160--33768207 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 15
33768150 CAATTTTATT
33768160 TTAATAATAAATATTTA
1 TTAATAATAAATA--TA
*
33768177 TTACAATTATAAATATA
1 TT--AATAATAAATATA
33768194 TTAATAATAAATAT
1 TTAATAATAAATAT
33768208 TTTGTAGTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
15 11 0.41
17 6 0.22
19 10 0.37
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
TTAATAATAAATATA
Found at i:33768385 original size:14 final size:14
Alignment explanation
Indices: 33768366--33768403 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
33768356 TCAGAAAAGT
*
33768366 AAATCATTTTTTAG
1 AAATCATTTTTCAG
33768380 AAATCA-TTTTCAG
1 AAATCATTTTTCAG
33768393 AAAGTCATTTT
1 AAA-TCATTTT
33768404 CAGTGAAACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
13 9 0.43
14 9 0.43
15 3 0.14
ACGTcount: A:0.37, C:0.11, G:0.08, T:0.45
Consensus pattern (14 bp):
AAATCATTTTTCAG
Found at i:33768404 original size:14 final size:13
Alignment explanation
Indices: 33768366--33768406 Score: 55
Period size: 14 Copynumber: 3.0 Consensus size: 13
33768356 TCAGAAAAGT
*
33768366 AAATCATTTTTTAG
1 AAATCA-TTTTCAG
33768380 AAATCATTTTCAG
1 AAATCATTTTCAG
33768393 AAAGTCATTTTCAG
1 AAA-TCATTTTCAG
33768407 TGAAACAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 9 0.36
14 16 0.64
ACGTcount: A:0.37, C:0.12, G:0.10, T:0.41
Consensus pattern (13 bp):
AAATCATTTTCAG
Found at i:33771543 original size:3 final size:3
Alignment explanation
Indices: 33771537--33771568 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
33771527 TGATGATGAT
*
33771537 GAG GAG GAG GAG GAG GAG GAG GAG GAA GAG GA
1 GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GA
33771569 TAAGCAGTAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.38, C:0.00, G:0.62, T:0.00
Consensus pattern (3 bp):
GAG
Found at i:33772586 original size:3 final size:3
Alignment explanation
Indices: 33772578--33772603 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
33772568 TGTTAATGCA
33772578 TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TT
33772604 ATAATTTTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:33772798 original size:23 final size:23
Alignment explanation
Indices: 33772766--33772816 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
33772756 ACGGTTTCAT
*
33772766 ATTATTTATTT-TATCAAAAATAA
1 ATTATATATTTATATCAAAAA-AA
* *
33772789 ATTATATATTTATGTTAAAAAAA
1 ATTATATATTTATATCAAAAAAA
33772812 ATTAT
1 ATTAT
33772817 TAAATTATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 17 0.71
24 7 0.29
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (23 bp):
ATTATATATTTATATCAAAAAAA
Found at i:33773986 original size:18 final size:18
Alignment explanation
Indices: 33773959--33773998 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
33773949 AAATTGTTAT
* *
33773959 TTAAAATAATATTTTCTG
1 TTAAAATAATAATTTCTA
*
33773977 TTAAATTAATAATTTCTA
1 TTAAAATAATAATTTCTA
33773995 TTAA
1 TTAA
33773999 TTTTATGTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.05, G:0.03, T:0.50
Consensus pattern (18 bp):
TTAAAATAATAATTTCTA
Done.