Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 107 of 352
Found at i:34086336 original size:50 final size:50
Alignment explanation
Indices: 34086241--34086338 Score: 151
Period size: 50 Copynumber: 2.0 Consensus size: 50
34086231 ATCTTATTGT
* * **
34086241 AATCAATGTCAAATAGAAGAAGAGTAGTTTTATATTGATTCTACTTGTGC
1 AATCAATGTCAAATAGAAGAAGAGTAATTCTATACGGATTCTACTTGTGC
*
34086291 AATCAATGTCAAATAGAAGAAGAGTAATTCTATACGGATTTTACTTGT
1 AATCAATGTCAAATAGAAGAAGAGTAATTCTATACGGATTCTACTTGT
34086339 ACAGCTTGGT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 43 1.00
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.35
Consensus pattern (50 bp):
AATCAATGTCAAATAGAAGAAGAGTAATTCTATACGGATTCTACTTGTGC
Found at i:34096940 original size:40 final size:40
Alignment explanation
Indices: 34096885--34097010 Score: 173
Period size: 40 Copynumber: 3.1 Consensus size: 40
34096875 TTTGTGCTTC
* * *
34096885 GGTGCTTCAGATTGCACAATTGTGCCT-TTTTTGGCACTTT
1 GGTGCCTCTGATTGCACAATTGTGCCTCTATTT-GCACTTT
* *
34096925 GGTGCCTCTGATTGCACAATTGTGCCTCTGTTTGCAGTTT
1 GGTGCCTCTGATTGCACAATTGTGCCTCTATTTGCACTTT
* *
34096965 GGTGCCTCTGATTGCACAATTATGCCTCTATTTGCACTTC
1 GGTGCCTCTGATTGCACAATTGTGCCTCTATTTGCACTTT
34097005 GGTGCC
1 GGTGCC
34097011 CCTATTAACA
Statistics
Matches: 77, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
40 73 0.95
41 4 0.05
ACGTcount: A:0.14, C:0.24, G:0.23, T:0.39
Consensus pattern (40 bp):
GGTGCCTCTGATTGCACAATTGTGCCTCTATTTGCACTTT
Found at i:34097001 original size:20 final size:20
Alignment explanation
Indices: 34096894--34096993 Score: 89
Period size: 20 Copynumber: 5.0 Consensus size: 20
34096884 CGGTGCTTCA
34096894 GATTGCACAATTGTGCCT-T
1 GATTGCACAATTGTGCCTCT
** *
34096913 TTTTGGCAC-TTTGGTGCCTCT
1 GATT-GCACAATT-GTGCCTCT
34096934 GATTGCACAATTGTGCCTCT
1 GATTGCACAATTGTGCCTCT
* **
34096954 GTTTGCA-GTTTGGTGCCTCT
1 GATTGCACAATT-GTGCCTCT
*
34096974 GATTGCACAATTATGCCTCT
1 GATTGCACAATTGTGCCTCT
34096994 ATTTGCACTT
Statistics
Matches: 62, Mismatches: 13, Indels: 11
0.72 0.15 0.13
Matches are distributed among these distances:
19 6 0.10
20 49 0.79
21 7 0.11
ACGTcount: A:0.15, C:0.23, G:0.22, T:0.40
Consensus pattern (20 bp):
GATTGCACAATTGTGCCTCT
Found at i:34100272 original size:27 final size:27
Alignment explanation
Indices: 34100242--34100302 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
34100232 CTTATATATG
34100242 GAAGTCCACAGGAC-AT-TCATGTATGTA
1 GAAGTCCACAGGACTATAT--TGTATGTA
*
34100269 GAAGTCCGCAGGACTATATTGTATGTA
1 GAAGTCCACAGGACTATATTGTATGTA
34100296 GAAGTCC
1 GAAGTCC
34100303 GTCAGGGTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
27 28 0.90
28 2 0.06
29 1 0.03
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (27 bp):
GAAGTCCACAGGACTATATTGTATGTA
Found at i:34106923 original size:57 final size:57
Alignment explanation
Indices: 34106862--34106987 Score: 182
Period size: 57 Copynumber: 2.2 Consensus size: 57
34106852 ATTACTCGTT
* *
34106862 CGGGCTAAATCCATTACATAGTATTCTTC-AGGAGGGCTAATATTTGGATCACCCATC
1 CGGGCTAAATCCATTACACAGTATTCTTCGA-GAGGGCTAATATTTAGATCACCCATC
* * *
34106919 CGGGCTAAATCCATTACACAGTATTTTTCGAGAGGGCTAATATTTAGATCACCCGTT
1 CGGGCTAAATCCATTACACAGTATTCTTCGAGAGGGCTAATATTTAGATCACCCATC
*
34106976 CGGGCTAGATCC
1 CGGGCTAAATCC
34106988 TCAGTACCGT
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
57 61 0.98
58 1 0.02
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (57 bp):
CGGGCTAAATCCATTACACAGTATTCTTCGAGAGGGCTAATATTTAGATCACCCATC
Found at i:34108855 original size:25 final size:25
Alignment explanation
Indices: 34108827--34108874 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
34108817 GAGTGCTTTC
*
34108827 AGTACAGT-CTATCTATAGTAGTTGT
1 AGTACA-TACTATCTATAGCAGTTGT
*
34108852 AGTATATACTATCTATAGCAGTT
1 AGTACATACTATCTATAGCAGTT
34108875 TCAGTTAGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 1 0.05
25 19 0.95
ACGTcount: A:0.31, C:0.12, G:0.17, T:0.40
Consensus pattern (25 bp):
AGTACATACTATCTATAGCAGTTGT
Found at i:34110846 original size:23 final size:23
Alignment explanation
Indices: 34110814--34110862 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
34110804 CAACCTTACC
**
34110814 TAAAAAGCACAAAGGCATTGATA
1 TAAAAAGCACAAAGGCACCGATA
*
34110837 TAAAACGCACAAAGGCACCGATA
1 TAAAAAGCACAAAGGCACCGATA
34110860 TAA
1 TAA
34110863 CGAATCGCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.51, C:0.18, G:0.16, T:0.14
Consensus pattern (23 bp):
TAAAAAGCACAAAGGCACCGATA
Found at i:34115109 original size:22 final size:22
Alignment explanation
Indices: 34115084--34115126 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
34115074 CTAACAAAAC
*
34115084 TTATTCATT-TTTCTATCTCAAT
1 TTATACATTATTTCTA-CTCAAT
*
34115106 TTATACTTTATTTCTACTCAA
1 TTATACATTATTTCTACTCAA
34115127 ATTCCAATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.26, C:0.19, G:0.00, T:0.56
Consensus pattern (22 bp):
TTATACATTATTTCTACTCAAT
Found at i:34115708 original size:8 final size:8
Alignment explanation
Indices: 34115695--34115737 Score: 54
Period size: 8 Copynumber: 5.5 Consensus size: 8
34115685 GCACAAAACT
34115695 TTAATTTA
1 TTAATTTA
34115703 TTAATTTA
1 TTAATTTA
34115711 TTAATTTA
1 TTAATTTA
34115719 TGT-ATTTA
1 T-TAATTTA
*
34115727 TTTATTT-
1 TTAATTTA
34115734 TTAA
1 TTAA
34115738 ATCATATTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
7 4 0.12
8 27 0.84
9 1 0.03
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (8 bp):
TTAATTTA
Found at i:34119108 original size:36 final size:35
Alignment explanation
Indices: 34119048--34119306 Score: 195
Period size: 36 Copynumber: 7.1 Consensus size: 35
34119038 CTAACCTTTA
* *
34119048 AAAAAGATTGGGATAGACTCGTCTAAGACAACCTT
1 AAAAAGGTTGGGATAGACTTGTCTAAGACAACCTT
*
34119083 AAAAAGGTTGGGATAGACTTTGTCTAAGGCAACCTT
1 AAAAAGGTTGGGATAGAC-TTGTCTAAGACAACCTT
** * * *
34119119 AAAAAGGTTGTTATAGTTCTTGTCTAAGGCAACTTTT
1 AAAAAGGTTGGGATAG-ACTTGTCTAAGACAAC-CTT
* *
34119156 AAAAATGGTTGGG-TAGAGC-CGTCTAAGACAATCTT
1 AAAAA-GGTTGGGATAGA-CTTGTCTAAGACAACCTT
*
34119191 AAAAAGGTTGGGATAAACCTTGTCTAAGACAACCTAT
1 AAAAAGGTTGGGATAGA-CTTGTCTAAGACAACCT-T
** * * *
34119228 AAAAAAAGGTCAGGATAAACCTATCTAA-AGCAACCTT
1 --AAAAAGGTTGGGATAGACTTGTCTAAGA-CAACCTT
* *
34119265 AAACAA-GTTGAGATAGACCATGTCTAA-AGCAACCTTT
1 AAA-AAGGTTGGGATAGA-CTTGTCTAAGA-CAACC-TT
34119302 AAAAA
1 AAAAA
34119307 AAATTGAGAT
Statistics
Matches: 182, Mismatches: 28, Indels: 27
0.77 0.12 0.11
Matches are distributed among these distances:
34 7 0.04
35 38 0.21
36 84 0.46
37 20 0.11
38 18 0.10
39 15 0.08
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.26
Consensus pattern (35 bp):
AAAAAGGTTGGGATAGACTTGTCTAAGACAACCTT
Found at i:34119182 original size:108 final size:111
Alignment explanation
Indices: 34119034--34119232 Score: 298
Period size: 108 Copynumber: 1.8 Consensus size: 111
34119024 TTACCTAGTC
*
34119034 AAGGCTAACCTTTAAAAAAGATTGGGATAGACTCGTCTAAGACAACCTTAAAAAGGTTGGGATAG
1 AAGGCTAACCTTTAAAAAAGATTGGGATAGACTCGTCTAAGACAACCTTAAAAAGGTTGGGATAA
* *
34119099 ACTTTGTCTAAGGCAACCT-TAAAAAGGTTGTTATAGTTCTTGTCT
66 ACCTTGTCTAAGACAACCTATAAAAAGGTTGTTATAGTTCTTGTCT
* * * *
34119144 AAGGC-AACTTTTAAAAATGGTTGGG-TAGAGC-CGTCTAAGACAATCTTAAAAAGGTTGGGATA
1 AAGGCTAACCTTTAAAAAAGATTGGGATAGA-CTCGTCTAAGACAACCTTAAAAAGGTTGGGATA
34119206 AACCTTGTCTAAGACAACCTATAAAAA
65 AACCTTGTCTAAGACAACCTATAAAAA
34119233 AAGGTCAGGA
Statistics
Matches: 80, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
108 51 0.64
109 24 0.30
110 5 0.06
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.28
Consensus pattern (111 bp):
AAGGCTAACCTTTAAAAAAGATTGGGATAGACTCGTCTAAGACAACCTTAAAAAGGTTGGGATAA
ACCTTGTCTAAGACAACCTATAAAAAGGTTGTTATAGTTCTTGTCT
Found at i:34119499 original size:73 final size:71
Alignment explanation
Indices: 34119188--34119501 Score: 261
Period size: 73 Copynumber: 4.3 Consensus size: 71
34119178 CTAAGACAAT
* * * ** *
34119188 CTTAAAAAGGTTGGGATAAACCTTGTCTAAGACAACCTATAAAAAAAGGTCAGGATAAACCTATC
1 CTTAAAAA-GTTGAGATAAACCTTGTCTAAG-CAACCTTTAAAAAAA-GTTAAAATAAACCCATC
*
34119253 TAAAGCAAC
63 TAAAGTAAC
* * * * * *
34119262 CTTAAACAAGTTGAGATAGACCATGTCTAAAGCAACCTTTAAAAAAAATTGAGATAAACCCGTCT
1 CTTAAA-AAGTTGAGATAAACCTTGTCT-AAGCAACCTTTAAAAAAAGTTAAAATAAACCCATCT
*
34119327 -AAGAAAAC
64 AAAG-TAAC
* * ** * * * * *
34119335 ATTAACAAAGTTGAGATAGACCTTACCTTAAGCAACTTTTAAAAAAAGTTAGAATACACCCGTTT
1 CTTAA-AAAGTTGAGATAAACCTTGTC-TAAGCAACCTTTAAAAAAAGTTAAAATAAACCCATCT
34119400 AAAGTAAC
64 AAAGTAAC
* * * * *
34119408 CTTAAAAATTTTGGGATAAATCTTGTCTACTGCAACCTTTAAAAAAGGTTAAAATAAACCCATCT
1 CTTAAAAA-GTTGAGATAAACCTTGTCTA-AGCAACCTTTAAAAAAAGTTAAAATAAACCCATCT
34119473 AAAGTAAC
64 AAAGTAAC
*
34119481 CTTAAAAAGATTGTGATAAAC
1 CTTAAAAAG-TTGAGATAAAC
34119502 ACGTATAATG
Statistics
Matches: 191, Mismatches: 40, Indels: 19
0.76 0.16 0.08
Matches are distributed among these distances:
72 8 0.04
73 137 0.72
74 41 0.21
75 5 0.03
ACGTcount: A:0.45, C:0.17, G:0.13, T:0.25
Consensus pattern (71 bp):
CTTAAAAAGTTGAGATAAACCTTGTCTAAGCAACCTTTAAAAAAAGTTAAAATAAACCCATCTAA
AGTAAC
Found at i:34124060 original size:17 final size:17
Alignment explanation
Indices: 34124038--34124135 Score: 52
Period size: 17 Copynumber: 5.4 Consensus size: 17
34124028 ATTGAATCAC
34124038 TACATAATTAAAAACAT
1 TACATAATTAAAAACAT
** * *
34124055 TACATAAGTCTTCGAATCAC
1 TACATAA---TTAAAAACAT
*
34124075 AACATAATTAAAAACAT
1 TACATAATTAAAAACAT
** * *
34124092 TACATAAGTCTTTGAATCAC
1 TACATAA---TTAAAAACAT
*
34124112 TACATAATTAAAAAAAT
1 TACATAATTAAAAACAT
34124129 TACATAA
1 TACATAA
34124136 GTCTTGAAAT
Statistics
Matches: 56, Mismatches: 19, Indels: 12
0.64 0.22 0.14
Matches are distributed among these distances:
17 31 0.55
20 25 0.45
ACGTcount: A:0.51, C:0.15, G:0.04, T:0.30
Consensus pattern (17 bp):
TACATAATTAAAAACAT
Found at i:34124073 original size:37 final size:37
Alignment explanation
Indices: 34124031--34124140 Score: 193
Period size: 37 Copynumber: 3.0 Consensus size: 37
34124021 TTAAAGTATT
34124031 GAATCACTACATAATTAAAAACATTACATAAGTCTTC
1 GAATCACTACATAATTAAAAACATTACATAAGTCTTC
* *
34124068 GAATCACAACATAATTAAAAACATTACATAAGTCTTT
1 GAATCACTACATAATTAAAAACATTACATAAGTCTTC
*
34124105 GAATCACTACATAATTAAAAAAATTACATAAGTCTT
1 GAATCACTACATAATTAAAAACATTACATAAGTCTT
34124141 GAAATTAACA
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.48, C:0.16, G:0.05, T:0.30
Consensus pattern (37 bp):
GAATCACTACATAATTAAAAACATTACATAAGTCTTC
Found at i:34127951 original size:22 final size:22
Alignment explanation
Indices: 34127926--34127974 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
34127916 CTTGGCTATT
34127926 ATAAGTAAAAAG-TAAAAAAATA
1 ATAAGTAAAAAGAT-AAAAAATA
* * *
34127948 ATAAATAATATGATAAAAAATA
1 ATAAGTAAAAAGATAAAAAATA
34127970 ATAAG
1 ATAAG
34127975 AAGAAAACAA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
22 21 0.95
23 1 0.05
ACGTcount: A:0.69, C:0.00, G:0.08, T:0.22
Consensus pattern (22 bp):
ATAAGTAAAAAGATAAAAAATA
Found at i:34129140 original size:21 final size:21
Alignment explanation
Indices: 34129116--34129156 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
34129106 TTTCTTGTTG
*
34129116 CCTCTACTGCCCTTGCTGCTT
1 CCTCTACTGCCCTCGCTGCTT
* *
34129137 CCTCTGCTTCCCTCGCTGCT
1 CCTCTACTGCCCTCGCTGCT
34129157 GCTTCCGCTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.02, C:0.46, G:0.15, T:0.37
Consensus pattern (21 bp):
CCTCTACTGCCCTCGCTGCTT
Found at i:34131349 original size:23 final size:25
Alignment explanation
Indices: 34131306--34131355 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 25
34131296 ATGGGAAAGA
*
34131306 AAAAAATAAGTTAGGGAATTAG-GG
1 AAAAAATAAGTTAGAGAATTAGAGG
*
34131330 AAAAATTAAGTTAGAG-ATTAGAGG
1 AAAAAATAAGTTAGAGAATTAGAGG
34131354 AA
1 AA
34131356 TAAGGGTTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 5 0.22
24 18 0.78
ACGTcount: A:0.52, C:0.00, G:0.26, T:0.22
Consensus pattern (25 bp):
AAAAAATAAGTTAGAGAATTAGAGG
Found at i:34137202 original size:14 final size:13
Alignment explanation
Indices: 34137158--34137200 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
34137148 ATCTCAAATC
34137158 TTTTATTAGTTTGA
1 TTTT-TTAGTTTGA
34137172 TTTTTT--TTTG-
1 TTTTTTAGTTTGA
34137182 TTTTTTAGTTTGA
1 TTTTTTAGTTTGA
34137195 TTTTTT
1 TTTTTT
34137201 TAAGCCCTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
10 6 0.23
11 4 0.15
12 4 0.15
13 8 0.31
14 4 0.15
ACGTcount: A:0.12, C:0.00, G:0.12, T:0.77
Consensus pattern (13 bp):
TTTTTTAGTTTGA
Found at i:34147359 original size:48 final size:48
Alignment explanation
Indices: 34147288--34147383 Score: 147
Period size: 48 Copynumber: 2.0 Consensus size: 48
34147278 TGGCCACAGT
* * * *
34147288 ACTGATTGCACAAGTGGCAATGAGAAACCACGAGTTGCGGAGTGGGGA
1 ACTGATAGCACAAGTGGCAATGAGAAACCACGAGATGCGAAGCGGGGA
*
34147336 ACTGATAGCACAAGTGGCAATGAGAGACCACGAGATGCGAAGCGGGGA
1 ACTGATAGCACAAGTGGCAATGAGAAACCACGAGATGCGAAGCGGGGA
34147384 TCCAACAACC
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.33, C:0.18, G:0.35, T:0.14
Consensus pattern (48 bp):
ACTGATAGCACAAGTGGCAATGAGAAACCACGAGATGCGAAGCGGGGA
Found at i:34148087 original size:31 final size:31
Alignment explanation
Indices: 34148052--34148115 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
34148042 AGAATGTTAC
34148052 GAAAGCCCCTTCGAAAAAGTTAGTGGAGCGT
1 GAAAGCCCCTTCGAAAAAGTTAGTGGAGCGT
* *
34148083 GAAAGCCCTTTCGGAAAAGTTAGTGGAGCGT
1 GAAAGCCCCTTCGAAAAAGTTAGTGGAGCGT
34148114 GA
1 GA
34148116 GTCTGATATG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.31, C:0.17, G:0.31, T:0.20
Consensus pattern (31 bp):
GAAAGCCCCTTCGAAAAAGTTAGTGGAGCGT
Found at i:34150776 original size:4 final size:4
Alignment explanation
Indices: 34150755--34150793 Score: 60
Period size: 4 Copynumber: 9.8 Consensus size: 4
34150745 ACAAAGATCT
* *
34150755 ATAC ATGC ATAG ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
34150794 TATATATTAG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.49, C:0.21, G:0.05, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:34155597 original size:18 final size:18
Alignment explanation
Indices: 34155574--34155608 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
34155564 AGTGAGAATA
34155574 AGGAACCCAAAATCATTC
1 AGGAACCCAAAATCATTC
34155592 AGGAACCCAAAATCATT
1 AGGAACCCAAAATCATT
34155609 TTGACATTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.26, G:0.11, T:0.17
Consensus pattern (18 bp):
AGGAACCCAAAATCATTC
Found at i:34157866 original size:23 final size:23
Alignment explanation
Indices: 34157779--34157859 Score: 108
Period size: 23 Copynumber: 3.5 Consensus size: 23
34157769 TTAGTGCCAA
*
34157779 TCTGGTGTGTTTGGGTAGATTAT
1 TCTGGTGTGTTTGGGTGGATTAT
* * *
34157802 TATGGTGTGTTTGGGAGGATCAT
1 TCTGGTGTGTTTGGGTGGATTAT
*
34157825 TCTGGTGTGTTTGGTTGGATTAT
1 TCTGGTGTGTTTGGGTGGATTAT
*
34157848 TCCGGTGTGTTT
1 TCTGGTGTGTTT
34157860 TGTTGGAATC
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 49 1.00
ACGTcount: A:0.11, C:0.06, G:0.36, T:0.47
Consensus pattern (23 bp):
TCTGGTGTGTTTGGGTGGATTAT
Found at i:34158697 original size:15 final size:15
Alignment explanation
Indices: 34158677--34158724 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
34158667 AGTTTTTCTT
34158677 TAAAAAATAATAAAA
1 TAAAAAATAATAAAA
34158692 TAAAAAATAA-AAAA
1 TAAAAAATAATAAAA
*
34158706 T-AATAA-AATAAAA
1 TAAAAAATAATAAAA
34158719 TAAAAA
1 TAAAAA
34158725 TTTTCGGAGC
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
12 2 0.07
13 9 0.31
14 8 0.28
15 10 0.34
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (15 bp):
TAAAAAATAATAAAA
Found at i:34158700 original size:7 final size:7
Alignment explanation
Indices: 34158677--34158718 Score: 66
Period size: 7 Copynumber: 5.7 Consensus size: 7
34158667 AGTTTTTCTT
34158677 TAAAAAA
1 TAAAAAA
34158684 TAATAAAA
1 TAA-AAAA
34158692 TAAAAAA
1 TAAAAAA
34158699 TAAAAAA
1 TAAAAAA
34158706 TAATAAAA
1 TAA-AAAA
34158714 TAAAA
1 TAAAA
34158719 TAAAAATTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
7 19 0.58
8 14 0.42
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (7 bp):
TAAAAAA
Found at i:34158705 original size:22 final size:22
Alignment explanation
Indices: 34158677--34158718 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
34158667 AGTTTTTCTT
34158677 TAAAAAATAATAAAATAAAAAA
1 TAAAAAATAATAAAATAAAAAA
34158699 TAAAAAATAATAAAATAAAA
1 TAAAAAATAATAAAATAAAA
34158719 TAAAAATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (22 bp):
TAAAAAATAATAAAATAAAAAA
Found at i:34163058 original size:12 final size:12
Alignment explanation
Indices: 34163041--34163070 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
34163031 CCGTGTCTCT
34163041 CACACGGCCTAC
1 CACACGGCCTAC
*
34163053 CACACGGGCTAC
1 CACACGGCCTAC
34163065 CACACG
1 CACACG
34163071 CCCGTGTGGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.27, C:0.47, G:0.20, T:0.07
Consensus pattern (12 bp):
CACACGGCCTAC
Found at i:34167707 original size:7 final size:6
Alignment explanation
Indices: 34167687--34167742 Score: 55
Period size: 6 Copynumber: 9.3 Consensus size: 6
34167677 AATAATGAAT
*
34167687 AAATTG AAATTG AAATGTG -AATAG TAAA-T- AAATTG AAATTG AAATTG
1 AAATTG AAATTG AAAT-TG AAATTG -AAATTG AAATTG AAATTG AAATTG
34167734 AAATGTG AA
1 AAAT-TG AA
34167743 TAGTGAATAA
Statistics
Matches: 42, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
4 3 0.07
5 2 0.05
6 29 0.69
7 8 0.19
ACGTcount: A:0.52, C:0.00, G:0.18, T:0.30
Consensus pattern (6 bp):
AAATTG
Found at i:34167716 original size:29 final size:29
Alignment explanation
Indices: 34167668--34167735 Score: 111
Period size: 29 Copynumber: 2.4 Consensus size: 29
34167658 TTACACTTAC
*
34167668 TGAAATGTGAATAATGAATAAATTGAAAT
1 TGAAATGTGAATAATAAATAAATTGAAAT
*
34167697 TGAAATGTGAATAGTAAATAAATTGAAAT
1 TGAAATGTGAATAATAAATAAATTGAAAT
34167726 TGAAAT-TGAA
1 TGAAATGTGAA
34167736 ATGTGAATAG
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
28 4 0.11
29 33 0.89
ACGTcount: A:0.51, C:0.00, G:0.18, T:0.31
Consensus pattern (29 bp):
TGAAATGTGAATAATAAATAAATTGAAAT
Found at i:34168853 original size:41 final size:42
Alignment explanation
Indices: 34168756--34168920 Score: 260
Period size: 42 Copynumber: 4.0 Consensus size: 42
34168746 TCATTTTCTA
* * * * *
34168756 ATGCCATAGTCTAACTATGGTCTTACACATATTCACATATCG
1 ATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCG
*
34168798 ATGCGATAGCCCAGCTATGGTCTTACACGTAATCACATA-CG
1 ATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCG
*
34168839 ATGCCATAGCCCAGCTATAGTCTTACACGTAATCACATATCG
1 ATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCG
34168881 ATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATAT
1 ATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATAT
34168921 TGCCATGGTC
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
41 39 0.35
42 74 0.65
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (42 bp):
ATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCG
Found at i:34168895 original size:83 final size:83
Alignment explanation
Indices: 34168756--34168919 Score: 265
Period size: 83 Copynumber: 2.0 Consensus size: 83
34168746 TCATTTTCTA
* * * * *
34168756 ATGCCATAGTCTAACTATGGTCTTACACATATTCACATATCGATGCGATAGCCCAGCTATGGTCT
1 ATGCCATAGCCCAACTATAGTCTTACACATAATCACATATCGATGCCATAGCCCAGCTATGGTCT
34168821 TACACGTAATCACATACG
66 TACACGTAATCACATACG
* *
34168839 ATGCCATAGCCCAGCTATAGTCTTACACGTAATCACATATCGATGCCATAGCCCAGCTATGGTCT
1 ATGCCATAGCCCAACTATAGTCTTACACATAATCACATATCGATGCCATAGCCCAGCTATGGTCT
34168904 TACACGTAATCACATA
66 TACACGTAATCACATA
34168920 TTGCCATGGT
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
83 74 1.00
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (83 bp):
ATGCCATAGCCCAACTATAGTCTTACACATAATCACATATCGATGCCATAGCCCAGCTATGGTCT
TACACGTAATCACATACG
Found at i:34173207 original size:18 final size:18
Alignment explanation
Indices: 34173186--34173221 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
34173176 TATGACTTTA
*
34173186 GCAATTTCTATTTTTATT
1 GCAACTTCTATTTTTATT
34173204 GCAACTTCTATTTTTATT
1 GCAACTTCTATTTTTATT
34173222 TTAATTTACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.14, G:0.06, T:0.58
Consensus pattern (18 bp):
GCAACTTCTATTTTTATT
Found at i:34178707 original size:46 final size:46
Alignment explanation
Indices: 34178657--34178832 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
34178647 TGGTTGAGCA
34178657 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
34178703 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
34178748 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
34178796 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
34178833 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.57
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:34178813 original size:93 final size:93
Alignment explanation
Indices: 34178654--34178825 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
34178644 GGATGGTTGA
* *
34178654 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
34178719 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
34178747 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
34178812 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
34178826 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:34184188 original size:16 final size:15
Alignment explanation
Indices: 34184146--34184188 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 15
34184136 CTTAATTTGT
34184146 TCTTT-CTATTTATG
1 TCTTTACTATTTATG
*
34184160 TCTTTATTGATTTATG
1 TCTTTACT-ATTTATG
34184176 CTCTTTACTATTT
1 -TCTTTACTATTT
34184189 CTCTTATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
14 5 0.21
15 1 0.04
16 11 0.46
17 7 0.29
ACGTcount: A:0.16, C:0.14, G:0.07, T:0.63
Consensus pattern (15 bp):
TCTTTACTATTTATG
Found at i:34185729 original size:6 final size:6
Alignment explanation
Indices: 34185713--34185746 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
34185703 CATTGAGTCC
*
34185713 ATTTAT CTTTAT ATTTAT ATTTAT ATTTAT ATTT
1 ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTT
34185747 TAATTTTTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (6 bp):
ATTTAT
Found at i:34185736 original size:18 final size:17
Alignment explanation
Indices: 34185713--34185784 Score: 72
Period size: 18 Copynumber: 4.0 Consensus size: 17
34185703 CATTGAGTCC
34185713 ATTTATCTTTATATTTAT
1 ATTTATCTTTATATTT-T
*
34185731 ATTTATATTTATATTTT
1 ATTTATCTTTATATTTT
* *
34185748 AATTTTTCTTTTTATGTTT
1 -ATTTATCTTTATAT-TTT
*
34185767 ATTTTGTCTTTATATTTT
1 A-TTTATCTTTATATTTT
34185785 GAACTCTATT
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
17 1 0.02
18 30 0.67
19 14 0.31
ACGTcount: A:0.22, C:0.04, G:0.03, T:0.71
Consensus pattern (17 bp):
ATTTATCTTTATATTTT
Found at i:34185771 original size:12 final size:12
Alignment explanation
Indices: 34185713--34185771 Score: 55
Period size: 12 Copynumber: 4.8 Consensus size: 12
34185703 CATTGAGTCC
*
34185713 ATTTATCTTTAT
1 ATTTATTTTTAT
*
34185725 ATTTATATTTAT
1 ATTTATTTTTAT
34185737 ATTTATATTTTAAT
1 ATTTAT-TTTT-AT
* *
34185751 TTTTCTTTTTAT
1 ATTTATTTTTAT
*
34185763 GTTTATTTT
1 ATTTATTTT
34185772 GTCTTTATAT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
12 26 0.67
13 7 0.18
14 6 0.15
ACGTcount: A:0.24, C:0.03, G:0.02, T:0.71
Consensus pattern (12 bp):
ATTTATTTTTAT
Found at i:34186114 original size:30 final size:30
Alignment explanation
Indices: 34186080--34186171 Score: 175
Period size: 30 Copynumber: 3.1 Consensus size: 30
34186070 GGACATGGTT
*
34186080 GTGTGGCCAGCTCGTGGGGATCCCACGGCC
1 GTGTGGCCAGCCCGTGGGGATCCCACGGCC
34186110 GTGTGGCCAGCCCGTGGGGATCCCACGGCC
1 GTGTGGCCAGCCCGTGGGGATCCCACGGCC
34186140 GTGTGGCCAGCCCGTGGGGATCCCACGGCC
1 GTGTGGCCAGCCCGTGGGGATCCCACGGCC
34186170 GT
1 GT
34186172 TGCAATTTCT
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 61 1.00
ACGTcount: A:0.10, C:0.35, G:0.40, T:0.15
Consensus pattern (30 bp):
GTGTGGCCAGCCCGTGGGGATCCCACGGCC
Found at i:34187290 original size:32 final size:33
Alignment explanation
Indices: 34187204--34187317 Score: 115
Period size: 33 Copynumber: 3.5 Consensus size: 33
34187194 GGTGTAAATT
* * **
34187204 CCTTTCCAAGTGGTACACATAAAGTATATCTTT
1 CCTTTCCAAGTGGTACACACAAAGTATACCTAA
* * *
34187237 CCTTTTCATA-TGGTATACACAAAATATACCTAA
1 CCTTTCCA-AGTGGTACACACAAAGTATACCTAA
* *
34187270 CCTTTCCAAGT-GTACACACAAAGTGTACATAA
1 CCTTTCCAAGTGGTACACACAAAGTATACCTAA
*
34187302 CCTTTCCAAGTTGTAC
1 CCTTTCCAAGTGGTAC
34187318 CACTTGGGTA
Statistics
Matches: 66, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
32 29 0.44
33 36 0.55
34 1 0.02
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.32
Consensus pattern (33 bp):
CCTTTCCAAGTGGTACACACAAAGTATACCTAA
Found at i:34188516 original size:13 final size:13
Alignment explanation
Indices: 34188498--34188525 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
34188488 AGACTCATAA
34188498 TTGATAAAATTTT
1 TTGATAAAATTTT
34188511 TTGATAAAATTTT
1 TTGATAAAATTTT
34188524 TT
1 TT
34188526 ATGCAATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (13 bp):
TTGATAAAATTTT
Found at i:34194829 original size:33 final size:33
Alignment explanation
Indices: 34194790--34194869 Score: 108
Period size: 33 Copynumber: 2.4 Consensus size: 33
34194780 GAGGTGTACA
34194790 TTCCTTTTCAAGTGGTACACACAAAGTATACCT
1 TTCCTTTTCAAGTGGTACACACAAAGTATACCT
*
34194823 TTCCTTTTCATA-TGGTATACACAAAGTATACCT
1 TTCCTTTTCA-AGTGGTACACACAAAGTATACCT
** *
34194856 AACCTTTCCAAGTG
1 TTCCTTTTCAAGTG
34194870 TACCACTTGG
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
32 1 0.02
33 39 0.95
34 1 0.02
ACGTcount: A:0.30, C:0.24, G:0.11, T:0.35
Consensus pattern (33 bp):
TTCCTTTTCAAGTGGTACACACAAAGTATACCT
Found at i:34197449 original size:13 final size:13
Alignment explanation
Indices: 34197431--34197456 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
34197421 ACACATAATT
34197431 GATAAAATTTTTC
1 GATAAAATTTTTC
34197444 GATAAAATTTTTC
1 GATAAAATTTTTC
34197457 ATACAATATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (13 bp):
GATAAAATTTTTC
Found at i:34203704 original size:33 final size:33
Alignment explanation
Indices: 34203664--34203729 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
34203654 GAGGTGTACA
*
34203664 TTCCTTTTCA-AGTGGTACACACAAAGTATACCT
1 TTCCTTTTCATA-TGGTACACACAAAGTACACCT
* *
34203697 TTCCTTTTCATATGGTATACACAATGTACACCT
1 TTCCTTTTCATATGGTACACACAAAGTACACCT
34203730 AACCTTTCTA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 28 0.97
34 1 0.03
ACGTcount: A:0.29, C:0.24, G:0.11, T:0.36
Consensus pattern (33 bp):
TTCCTTTTCATATGGTACACACAAAGTACACCT
Found at i:34203736 original size:33 final size:33
Alignment explanation
Indices: 34203666--34203779 Score: 81
Period size: 33 Copynumber: 3.5 Consensus size: 33
34203656 GGTGTACATT
* **
34203666 CCTTTTCAAGTGGTACACACAAAGTATACCTTT
1 CCTTTTCAAGTGGTACACACAAAGTACACCTAA
* *
34203699 CCTTTTCATA-TGGTATACACAATGTACACCTAA
1 CCTTTTCA-AGTGGTACACACAAAGTACACCTAA
** ** **
34203732 CC-TTTCTAAGT-ACACACACAAAGTGTATATAA
1 CCTTTTC-AAGTGGTACACACAAAGTACACCTAA
*
34203764 CCTTTTCAAGTTGTAC
1 CCTTTTCAAGTGGTAC
34203780 CACTTGGGTA
Statistics
Matches: 61, Mismatches: 15, Indels: 10
0.71 0.17 0.12
Matches are distributed among these distances:
32 24 0.39
33 36 0.59
34 1 0.02
ACGTcount: A:0.32, C:0.24, G:0.11, T:0.33
Consensus pattern (33 bp):
CCTTTTCAAGTGGTACACACAAAGTACACCTAA
Found at i:34204972 original size:13 final size:13
Alignment explanation
Indices: 34204954--34204979 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
34204944 ACACATAATT
34204954 GATAAAAATTTTC
1 GATAAAAATTTTC
34204967 GATAAAAATTTTC
1 GATAAAAATTTTC
34204980 ATGCAATATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (13 bp):
GATAAAAATTTTC
Found at i:34209060 original size:44 final size:49
Alignment explanation
Indices: 34208963--34209082 Score: 177
Period size: 51 Copynumber: 2.4 Consensus size: 49
34208953 GATCACATTG
34208963 ATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTT
1 ATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC-TA-CACTT
*
34209014 ATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAATTATCACTT
1 ATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACC-ACTA-CACTT
* *
34209065 GTCACTTGTCACTTATCA
1 ATCACTTGTCACTGATCA
34209083 CTGATCAGAT
Statistics
Matches: 65, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
51 64 0.98
52 1 0.02
ACGTcount: A:0.31, C:0.23, G:0.13, T:0.33
Consensus pattern (49 bp):
ATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTACACTT
Found at i:34209064 original size:58 final size:58
Alignment explanation
Indices: 34209002--34209133 Score: 201
Period size: 58 Copynumber: 2.3 Consensus size: 58
34208992 CTAAAGCTAC
* *
34209002 CACTTATCACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAATTAT
1 CACTTGTCACTTATCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCAATTAT
* * * *
34209060 CACTTGTCACTTGTCACTTATCACTGATCAGATAAGTGTAGCTGAGGCTACCACTTAT
1 CACTTGTCACTTATCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCAATTAT
*
34209118 CACTTGTCACTGATCA
1 CACTTGTCACTTATCA
34209134 GAAGTACTCA
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
58 66 1.00
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (58 bp):
CACTTGTCACTTATCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCAATTAT
Found at i:34213344 original size:21 final size:22
Alignment explanation
Indices: 34213300--34213344 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
34213290 CCCAGATTTG
**
34213300 AAAAGATTAGAATAATATTGAA
1 AAAAGATTAGAATAATATCAAA
*
34213322 AAAAG-TTAGAGTAATATCAAA
1 AAAAGATTAGAATAATATCAAA
34213343 AA
1 AA
34213345 GAGTACTCCA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.60, C:0.02, G:0.13, T:0.24
Consensus pattern (22 bp):
AAAAGATTAGAATAATATCAAA
Found at i:34216228 original size:31 final size:31
Alignment explanation
Indices: 34216190--34216248 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
34216180 ACAAATGACA
34216190 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
*
34216221 AGTGAAAAGTGGTAGCTTCTGCTACCTG
1 AGTGAAAAGTGGTAGCTTCAGCTACCTG
34216249 CTAAAATCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
Found at i:34221100 original size:27 final size:27
Alignment explanation
Indices: 34221052--34221210 Score: 193
Period size: 27 Copynumber: 5.9 Consensus size: 27
34221042 GCGAGGCTGC
* *
34221052 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
34221079 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
34221105 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
34221132 CAGATAATCGTGGCATAGCCACCAGA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
34221159 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
34221186 CAGATAATTGTGGCAAAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
34221211 GACGCTTCCT
Statistics
Matches: 117, Mismatches: 7, Indels: 16
0.84 0.05 0.11
Matches are distributed among these distances:
26 10 0.09
27 102 0.87
28 5 0.04
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.18
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:34221145 original size:54 final size:54
Alignment explanation
Indices: 34221070--34221210 Score: 239
Period size: 54 Copynumber: 2.6 Consensus size: 54
34221060 GTGACGAAGT
*
34221070 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCAAAGCCACCAGAACAGATATATGTGGCAGAGC
* *
34221124 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCAAAGCCACCAGAACAGATATATGTGGCAGAGC
34221178 CACCAGATCAGATAATTGTGGCAAAGCCACCAG
1 CACCAGATCAGATAATTGTGGCAAAGCCACCAG
34221211 GACGCTTCCT
Statistics
Matches: 82, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
53 5 0.06
54 77 0.94
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.16
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCAAAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:34221649 original size:16 final size:15
Alignment explanation
Indices: 34221628--34221657 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
34221618 AAAATACCAA
34221628 CTTTTCGGCATTTTGG
1 CTTTTCGGC-TTTTGG
34221644 CTTTTCGGCTTTTG
1 CTTTTCGGCTTTTG
34221658 CCAATCTAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.03, C:0.20, G:0.23, T:0.53
Consensus pattern (15 bp):
CTTTTCGGCTTTTGG
Found at i:34222862 original size:26 final size:26
Alignment explanation
Indices: 34222832--34222887 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
34222822 TGAAATTCCC
34222832 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
34222858 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
34222884 ATCA
1 ATCA
34222888 ATTTGTATCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:34229468 original size:47 final size:47
Alignment explanation
Indices: 34229416--34229761 Score: 500
Period size: 47 Copynumber: 7.3 Consensus size: 47
34229406 TGTACAAGTA
* * *
34229416 TATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAA-AGTA
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG
34229463 TATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATAT--GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
34229512 TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
34229559 TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
34229606 TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
34229653 CATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG
* *
34229700 TATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAA-GTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGT-GAACATG
*
34229747 TATAAATGTGATAAG
1 TATATATGTGATAAG
34229762 TCCCGAAGGG
Statistics
Matches: 280, Mismatches: 14, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 235 0.84
48 3 0.01
49 40 0.14
50 1 0.00
ACGTcount: A:0.32, C:0.10, G:0.31, T:0.27
Consensus pattern (47 bp):
TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
Found at i:34229639 original size:22 final size:22
Alignment explanation
Indices: 34229612--34229733 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
34229602 CATGTGTATG
34229612 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
34229634 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
34229659 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
34229681 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
34229706 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
34229728 TGTGAT
1 TGTGAT
34229734 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:34232256 original size:38 final size:38
Alignment explanation
Indices: 34232192--34232266 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
34232182 AATCCGAGTT
*
34232192 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
34232230 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
34232267 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:34232379 original size:40 final size:40
Alignment explanation
Indices: 34232320--34232679 Score: 571
Period size: 40 Copynumber: 9.1 Consensus size: 40
34232310 AGGTCTCGAC
34232320 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
34232359 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
34232399 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
34232439 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
34232479 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
34232519 GATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
34232559 GATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * * *
34232599 GATATATCCGTGCTAA-ACCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * * * *
34232638 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
34232678 GA
1 GA
34232680 CGTGTATTCG
Statistics
Matches: 299, Mismatches: 20, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
39 37 0.12
40 262 0.88
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:34235999 original size:47 final size:46
Alignment explanation
Indices: 34235947--34236335 Score: 534
Period size: 47 Copynumber: 8.3 Consensus size: 46
34235937 TGTACAAGTA
* * *
34235947 TATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAAAGTA
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA-TG
34235994 TATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATAT--GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-ATG
* *
34236043 TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-ATG
* *
34236090 TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-ATG
*
34236137 --TATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-ATG
*
34236182 --TATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-ATG
* *
34236227 CATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA-TG
* *
34236274 TATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGT-GAAATG
*
34236321 TATAAATGTGATAAG
1 TATATATGTGATAAG
34236336 TCCCGAAGGG
Statistics
Matches: 323, Mismatches: 12, Indels: 14
0.93 0.03 0.04
Matches are distributed among these distances:
45 88 0.27
46 1 0.00
47 190 0.59
48 3 0.01
49 40 0.12
50 1 0.00
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.26
Consensus pattern (46 bp):
TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAATG
Found at i:34236165 original size:36 final size:37
Alignment explanation
Indices: 34236125--34236259 Score: 101
Period size: 45 Copynumber: 3.2 Consensus size: 37
34236115 CAATGTGATG
34236125 AATGTGAACATGTATATGAGATAAGGCCGAATGGCCAATGTGA
1 AATGTGAACATGTATATGAGATAAGGCCGAATGGCC------A
34236168 TGAATGTGAACATGTATATGAGATAAGGCCGAATGGCCAATGTGA
1 --AATGTGAACATGTATATGAGATAAGGCCGAATGGCC------A
34236213 TGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCC-
1 --AATGTGAACATG--TATATGAGATAAGGCCGAATGGCCA
34236253 AATGTGA
1 AATGTGA
34236260 TGAATGTGAA
Statistics
Matches: 88, Mismatches: 0, Indels: 11
0.89 0.00 0.11
Matches are distributed among these distances:
38 7 0.08
45 57 0.65
47 24 0.27
ACGTcount: A:0.36, C:0.12, G:0.28, T:0.24
Consensus pattern (37 bp):
AATGTGAACATGTATATGAGATAAGGCCGAATGGCCA
Found at i:34236286 original size:184 final size:187
Alignment explanation
Indices: 34235949--34236314 Score: 569
Period size: 184 Copynumber: 2.0 Consensus size: 187
34235939 TACAAGTATA
* * * * *
34235949 TATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAAAGTATATATATGCGTGATAAGGCC
1 TATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGCATATATAT-CGAGATAAGGCC
** * *
34236014 GAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGA
65 GAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGA
* *
34236079 ATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
130 ATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
*
34236137 TATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTG-AA-CATGTATAT-GAGATAAGGCCG
1 TATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGCATATATATCGAGATAAGGCCG
34236199 AATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAA
66 AATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAA
*
34236264 TGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTG
131 TGTGAACA-TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
34236315 GAAGTGTATA
Statistics
Matches: 164, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
183 1 0.01
184 118 0.72
186 7 0.04
187 2 0.01
188 36 0.22
ACGTcount: A:0.33, C:0.11, G:0.31, T:0.26
Consensus pattern (187 bp):
TATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGCATATATATCGAGATAAGGCCG
AATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAA
TGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
Found at i:34238981 original size:5 final size:5
Alignment explanation
Indices: 34238971--34239060 Score: 153
Period size: 5 Copynumber: 18.0 Consensus size: 5
34238961 TAAAGTATAT
34238971 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
* * *
34239021 TATTA TGTTA TGTTA TATTA GATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
34239061 ACTAATAAAC
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
5 81 1.00
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (5 bp):
TATTA
Found at i:34239776 original size:14 final size:16
Alignment explanation
Indices: 34239747--34239779 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
34239737 GTATTTTAAT
34239747 TAAAATGCATGGTAAG
1 TAAAATGCATGGTAAG
34239763 TAAAATG-A-GGTAAG
1 TAAAATGCATGGTAAG
34239777 TAA
1 TAA
34239780 TTGATATGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 9 0.53
15 1 0.06
16 7 0.41
ACGTcount: A:0.48, C:0.03, G:0.24, T:0.24
Consensus pattern (16 bp):
TAAAATGCATGGTAAG
Found at i:34239857 original size:23 final size:21
Alignment explanation
Indices: 34239831--34239875 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 21
34239821 GTGTATATGG
34239831 TTATTGGAATTGAATATGATTAT
1 TTATTGGAATTGAA-ATG-TTAT
*
34239854 TTATTTGAATTGAAATGTTAT
1 TTATTGGAATTGAAATGTTAT
34239875 T
1 T
34239876 AGTGAATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 5 0.24
22 3 0.14
23 13 0.62
ACGTcount: A:0.33, C:0.00, G:0.16, T:0.51
Consensus pattern (21 bp):
TTATTGGAATTGAAATGTTAT
Found at i:34239893 original size:29 final size:29
Alignment explanation
Indices: 34239861--34239942 Score: 114
Period size: 29 Copynumber: 2.8 Consensus size: 29
34239851 TATTTATTTG
*
34239861 AATTGAAATGTTATTAGTGAATAAATTGA
1 AATTGAAATGTAATTAGTGAATAAATTGA
*
34239890 AATTGAAATGTGAA-TAGTAAATAAATTGA
1 AATTGAAATGT-AATTAGTGAATAAATTGA
34239919 AATTGAAATGTGAATT-GTGAATAA
1 AATTGAAATGT-AATTAGTGAATAA
34239943 TGATTATTTT
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
29 46 0.96
30 2 0.04
ACGTcount: A:0.48, C:0.00, G:0.18, T:0.34
Consensus pattern (29 bp):
AATTGAAATGTAATTAGTGAATAAATTGA
Found at i:34240382 original size:24 final size:24
Alignment explanation
Indices: 34240355--34240425 Score: 133
Period size: 24 Copynumber: 3.0 Consensus size: 24
34240345 AACATGGTTT
*
34240355 TATGAAATGATTATTGATATAATG
1 TATGAAATGGTTATTGATATAATG
34240379 TATGAAATGGTTATTGATATAATG
1 TATGAAATGGTTATTGATATAATG
34240403 TATGAAATGGTTATTGATATAAT
1 TATGAAATGGTTATTGATATAAT
34240426 TAGACTATAT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.39, C:0.00, G:0.18, T:0.42
Consensus pattern (24 bp):
TATGAAATGGTTATTGATATAATG
Found at i:34245146 original size:24 final size:25
Alignment explanation
Indices: 34245119--34245176 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 25
34245109 TATGCTCTTT
* * *
34245119 CGAGCTATA-AACGGTAAGCTCCTC
1 CGAGCTAAATAACGGTAAGCTCATA
*
34245143 CGAGATGAAATAACGGTAAGCTCATA
1 CGAGCT-AAATAACGGTAAGCTCATA
34245169 CGAGCTAA
1 CGAGCTAA
34245177 GAATCAATAA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
24 5 0.19
25 4 0.15
26 18 0.67
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.19
Consensus pattern (25 bp):
CGAGCTAAATAACGGTAAGCTCATA
Found at i:34253106 original size:41 final size:40
Alignment explanation
Indices: 34252979--34253123 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
34252969 CTCGCACAAG
* * * * *
34252979 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
34253019 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
34253059 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
34253100 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
34253124 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:34255204 original size:32 final size:32
Alignment explanation
Indices: 34255163--34255227 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
34255153 CATGTACGTA
34255163 AGTTGCTTATGTTTACAAATAAATTCGGCATG
1 AGTTGCTTATGTTTACAAATAAATTCGGCATG
*
34255195 AGTTGCTTATGTTTACAAATAAATTTGGCATG
1 AGTTGCTTATGTTTACAAATAAATTCGGCATG
34255227 A
1 A
34255228 TGGTAGATGA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.38
Consensus pattern (32 bp):
AGTTGCTTATGTTTACAAATAAATTCGGCATG
Found at i:34258162 original size:16 final size:16
Alignment explanation
Indices: 34258141--34258176 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
34258131 ACACGGAAGC
34258141 TTTTGAAACTAAATAA
1 TTTTGAAACTAAATAA
34258157 TTTTGAAACTAAATAA
1 TTTTGAAACTAAATAA
34258173 TTTT
1 TTTT
34258177 CGTAATCATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.44
Consensus pattern (16 bp):
TTTTGAAACTAAATAA
Found at i:34260050 original size:27 final size:27
Alignment explanation
Indices: 34260020--34260071 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
34260010 AACACGCCAA
* *
34260020 TATAATATAGCCTCCCAAGCACACCGG
1 TATAACATAGCCTCCCAAACACACCGG
*
34260047 TATAACATATCCTCCCAAACACACC
1 TATAACATAGCCTCCCAAACACACC
34260072 AATAAGGCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.37, C:0.37, G:0.08, T:0.19
Consensus pattern (27 bp):
TATAACATAGCCTCCCAAACACACCGG
Found at i:34260987 original size:17 final size:17
Alignment explanation
Indices: 34260965--34261000 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
34260955 CTTTTTTTCG
34260965 TTTTGTTC-TCTGTTCTT
1 TTTTGTTCTTCT-TTCTT
34260982 TTTTGTTCTTCTTTCTT
1 TTTTGTTCTTCTTTCTT
34260999 TT
1 TT
34261001 ACTTTCTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 15 0.83
18 3 0.17
ACGTcount: A:0.00, C:0.17, G:0.08, T:0.75
Consensus pattern (17 bp):
TTTTGTTCTTCTTTCTT
Found at i:34262855 original size:62 final size:63
Alignment explanation
Indices: 34262758--34262885 Score: 240
Period size: 62 Copynumber: 2.0 Consensus size: 63
34262748 CGATTCTAAC
*
34262758 TGCTATAAAATGAGTTGAATTCGTAAGTCGATCTACAATCACCCAAATAGCA-TTTTCTTACT
1 TGCTATAAAATGAGTTGAATTCATAAGTCGATCTACAATCACCCAAATAGCATTTTTCTTACT
34262820 TGCTATAAAATGAGTTGAATTCATAAGTCGATCTACAATCACCCAAATAGCATTTTTCTTACT
1 TGCTATAAAATGAGTTGAATTCATAAGTCGATCTACAATCACCCAAATAGCATTTTTCTTACT
34262883 TGC
1 TGC
34262886 CGACGACAGC
Statistics
Matches: 64, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
62 51 0.80
63 13 0.20
ACGTcount: A:0.34, C:0.20, G:0.12, T:0.34
Consensus pattern (63 bp):
TGCTATAAAATGAGTTGAATTCATAAGTCGATCTACAATCACCCAAATAGCATTTTTCTTACT
Found at i:34262922 original size:15 final size:16
Alignment explanation
Indices: 34262902--34262931 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
34262892 CAGCAATCCC
34262902 GTAACAAAA-TCCATA
1 GTAACAAAATTCCATA
34262917 GTAACAAAATTCCAT
1 GTAACAAAATTCCAT
34262932 TTCTATTCCG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.50, C:0.20, G:0.07, T:0.23
Consensus pattern (16 bp):
GTAACAAAATTCCATA
Found at i:34269173 original size:16 final size:16
Alignment explanation
Indices: 34269154--34269184 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
34269144 CTTTTTCACT
34269154 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
34269170 TACTTACTTACTTAA
1 TACTCACTTACTTAA
34269185 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:34269190 original size:20 final size:20
Alignment explanation
Indices: 34269151--34269190 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
34269141 AAACTTTTTC
* *
34269151 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
34269171 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
34269191 TTATTAATAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:34269786 original size:34 final size:34
Alignment explanation
Indices: 34269733--34269800 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 34
34269723 GAAATCAAAT
* ** **
34269733 GGAAAAAAGGTTTTTGGGGTTTGGGGGAAGTAAA
1 GGAAAAAAAGTTTAGGGGGTTTGGGAAAAGTAAA
34269767 GGAAAAAAAGTTTAGGGGGTTTGGGAAAAGTAAA
1 GGAAAAAAAGTTTAGGGGGTTTGGGAAAAGTAAA
34269801 ATTTTTGAGG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.38, C:0.00, G:0.38, T:0.24
Consensus pattern (34 bp):
GGAAAAAAAGTTTAGGGGGTTTGGGAAAAGTAAA
Found at i:34272757 original size:29 final size:30
Alignment explanation
Indices: 34272714--34272771 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
34272704 CTTCCTTTCC
* *
34272714 CTTTTTTAATAAATGACCCAGTATTTTTAA
1 CTTTTTTAATAAATGACCCAATATGTTTAA
* *
34272744 CTTTTTT-GTAAATGGCCCAATATGTTTA
1 CTTTTTTAATAAATGACCCAATATGTTTA
34272772 TGCTTTTTCT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 17 0.71
30 7 0.29
ACGTcount: A:0.29, C:0.14, G:0.10, T:0.47
Consensus pattern (30 bp):
CTTTTTTAATAAATGACCCAATATGTTTAA
Found at i:34295294 original size:29 final size:29
Alignment explanation
Indices: 34295260--34295333 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
34295250 TAATCAACCG
*
34295260 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
34295289 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
34295318 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
34295334 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:34297815 original size:813 final size:813
Alignment explanation
Indices: 34296249--34297874 Score: 3155
Period size: 813 Copynumber: 2.0 Consensus size: 813
34296239 ACAATATTTA
*
34296249 AGCACCATGGCCGAACCTTCATGAAGTTGCTAAGACCCATCATTTCTACTCCTCACACACTCTCA
1 AGCACCATGGCCGAACCTTCATGAAGTTGCTAAGACCCATCATTTATACTCCTCACACACTCTCA
34296314 CATCCAATCCTTTTTATTAAACACTCAAGCTCAATCATCTTCATGCCTCATCACCACAACATCAA
66 CATCCAATCCTTTTTATTAAACACTCAAGCTCAATCATCTTCATGCCTCATCACCACAACATCAA
34296379 AACACCAACCAAGAAAGACAACACCCATGGCCGAATATCATCTCCATCAATAGCAAAAATTTAAA
131 AACACCAACCAAGAAAGACAACACCCATGGCCGAATATCATCTCCATCAATAGCAAAAATTTAAA
34296444 CCATGGGCTAGGTAGAACTTAAACTAACAACTAAAAACATGCATGAATTTCAAAAAAAATAACAT
196 CCATGGGCTAGGTAGAACTTAAACTAACAACTAAAAACATGCATGAATTTCAAAAAAAATAACAT
*
34296509 CAAACATACCTCAACCTAGGTACAAGCATGGCCGAACTTCTTCACCTTTCTTTCCCTCACTCACG
261 CAAACATACCTCAACCTAGGAACAAGCATGGCCGAACTTCTTCACCTTTCTTTCCCTCACTCACG
34296574 GCAATTGTAACAAGGAAAAGGATGAACACTCCTTCTTCCTCCCTTATTTTATTCATCTTTTTCCT
326 GCAATTGTAACAAGGAAAAGGATGAACACTCCTTCTTCCTCCCTTATTTTATTCATCTTTTTCCT
*
34296639 TTTTAATTCCTTTCTTTAATTTATTTTATCTCCAATAACCCACTTTCTTATTATAATATCTAATT
391 TTTTAATTCCTTTCTTTAATTTATTTTATCTCCAATAACCCAATTTCTTATTATAATATCTAATT
34296704 CAAACAAATATATTGCCCATCATCAATCTATCTTGGCCGGCCACTATAAGGGAATTGGGCAATTT
456 CAAACAAATATATTGCCCATCATCAATCTATCTTGGCCGGCCACTATAAGGGAATTGGGCAATTT
34296769 GACATGCAAGTCCACCCTTGTGTTGACATGCACTAATAAGCCCTTTAAAATTAGCCTATCATATT
521 GACATGCAAGTCCACCCTTGTGTTGACATGCACTAATAAGCCCTTTAAAATTAGCCTATCATATT
34296834 TCACCATGTCTCATGTTGATCCCTATTTAATAATTCCTCATGCAATTGGAAAAATTAGGGAATGA
586 TCACCATGTCTCATGTTGATCCCTATTTAATAATTCCTCATGCAATTGGAAAAATTAGGGAATGA
34296899 AACTTCCACATATGCATGTACACACATAATAAGCATAGAATATAACAATTAATTATTTTTATGAC
651 AACTTCCACATATGCATGTACACACATAATAAGCATAGAATATAACAATTAATTATTTTTATGAC
34296964 TCGATTTTGTGGTCTCGAAACCACTTTCCGACTAGGGTCACATTAGGGCTGTCACAACTCTCCCC
716 TCGATTTTGTGGTCTCGAAACCACTTTCCGACTAGGGTCACATTAGGGCTGTCACAACTCTCCCC
34297029 CACATAAGAAATTTTCGTCCCCGAAAATCTTAC
781 CACATAAGAAATTTTCGTCCCCGAAAATCTTAC
34297062 AGCACCATGGCCGAACCTTCATGAAGTTGCTAAGACCCATCATTTATACTCCTCACACACTCTCA
1 AGCACCATGGCCGAACCTTCATGAAGTTGCTAAGACCCATCATTTATACTCCTCACACACTCTCA
34297127 CATCCAATCCTTTTTATTAAACACTCAAGCTCAATCATCTTCATGCCTCATCACCACAACATCAA
66 CATCCAATCCTTTTTATTAAACACTCAAGCTCAATCATCTTCATGCCTCATCACCACAACATCAA
34297192 AACACCAACCAAGAAAGACAACACCCATGGCCGAATATCATCTCCATCAATAGCAAAAATTTAAA
131 AACACCAACCAAGAAAGACAACACCCATGGCCGAATATCATCTCCATCAATAGCAAAAATTTAAA
34297257 CCATGGGCTAGGTAGAACTTAAACTAACAACTAAAAACATGCATGAATTTCAAAAAAAATAACAT
196 CCATGGGCTAGGTAGAACTTAAACTAACAACTAAAAACATGCATGAATTTCAAAAAAAATAACAT
34297322 CAAACATACCTCAACCTAGGAACAAGCATGGCCGAACTTCTTCACCTTTCTTTCCCTCACTCACG
261 CAAACATACCTCAACCTAGGAACAAGCATGGCCGAACTTCTTCACCTTTCTTTCCCTCACTCACG
*
34297387 GCAATTGTAACAAGGAAAATGATGAACACTCCTTCTTCCTCCCTTATTTTATTCATCTTTTTCCT
326 GCAATTGTAACAAGGAAAAGGATGAACACTCCTTCTTCCTCCCTTATTTTATTCATCTTTTTCCT
34297452 TTTTAATTCCTTTCTTTAATTTATTTTATCTCCAATAACCCAATTTCTTATTATAATATCTAATT
391 TTTTAATTCCTTTCTTTAATTTATTTTATCTCCAATAACCCAATTTCTTATTATAATATCTAATT
34297517 CAAACAAATATATTGCCCATCATCAATCTATCTTGGCCGGCCACTATAAGGGAATTGGGCAATTT
456 CAAACAAATATATTGCCCATCATCAATCTATCTTGGCCGGCCACTATAAGGGAATTGGGCAATTT
34297582 GACATGCAAGTCCACCCTTGTGTTGACATGCACTAATAAGCCCTTTAAAATTAGCCTATCATATT
521 GACATGCAAGTCCACCCTTGTGTTGACATGCACTAATAAGCCCTTTAAAATTAGCCTATCATATT
*
34297647 TCACCATGTCTCATGTTGATCCCTATTTAATAATTCCTCATGCAATTGGCAAAATTAGGGAATGA
586 TCACCATGTCTCATGTTGATCCCTATTTAATAATTCCTCATGCAATTGGAAAAATTAGGGAATGA
* *
34297712 AACTTCCCCATATGCATGTACACACATAATAAGCATAGAATATAACAATTAATTATTTTTATGGC
651 AACTTCCACATATGCATGTACACACATAATAAGCATAGAATATAACAATTAATTATTTTTATGAC
* *
34297777 TCGGTTTTGTGGTC-CTGAAACCACTTTCTGACTAGGGTCACATTAGGGCTGTCACAACTCTCCC
716 TCGATTTTGTGGTCTC-GAAACCACTTTCCGACTAGGGTCACATTAGGGCTGTCACAACTCTCCC
34297841 CCACATAAGAAATTTTCGTCCCCGAAAATCTTAC
780 CCACATAAGAAATTTTCGTCCCCGAAAATCTTAC
34297875 CGGTGAACAA
Statistics
Matches: 803, Mismatches: 9, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
812 1 0.00
813 802 1.00
ACGTcount: A:0.33, C:0.26, G:0.11, T:0.30
Consensus pattern (813 bp):
AGCACCATGGCCGAACCTTCATGAAGTTGCTAAGACCCATCATTTATACTCCTCACACACTCTCA
CATCCAATCCTTTTTATTAAACACTCAAGCTCAATCATCTTCATGCCTCATCACCACAACATCAA
AACACCAACCAAGAAAGACAACACCCATGGCCGAATATCATCTCCATCAATAGCAAAAATTTAAA
CCATGGGCTAGGTAGAACTTAAACTAACAACTAAAAACATGCATGAATTTCAAAAAAAATAACAT
CAAACATACCTCAACCTAGGAACAAGCATGGCCGAACTTCTTCACCTTTCTTTCCCTCACTCACG
GCAATTGTAACAAGGAAAAGGATGAACACTCCTTCTTCCTCCCTTATTTTATTCATCTTTTTCCT
TTTTAATTCCTTTCTTTAATTTATTTTATCTCCAATAACCCAATTTCTTATTATAATATCTAATT
CAAACAAATATATTGCCCATCATCAATCTATCTTGGCCGGCCACTATAAGGGAATTGGGCAATTT
GACATGCAAGTCCACCCTTGTGTTGACATGCACTAATAAGCCCTTTAAAATTAGCCTATCATATT
TCACCATGTCTCATGTTGATCCCTATTTAATAATTCCTCATGCAATTGGAAAAATTAGGGAATGA
AACTTCCACATATGCATGTACACACATAATAAGCATAGAATATAACAATTAATTATTTTTATGAC
TCGATTTTGTGGTCTCGAAACCACTTTCCGACTAGGGTCACATTAGGGCTGTCACAACTCTCCCC
CACATAAGAAATTTTCGTCCCCGAAAATCTTAC
Found at i:34303530 original size:29 final size:29
Alignment explanation
Indices: 34303496--34303569 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
34303486 TAATCAACCG
*
34303496 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
34303525 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
34303554 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
34303570 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:34315813 original size:22 final size:22
Alignment explanation
Indices: 34315786--34315830 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
34315776 CTGAAGCAGC
34315786 CTTGAAGGTAACTGATGTTCAG
1 CTTGAAGGTAACTGATGTTCAG
34315808 CTTGAAGGTAACTGATGTTCAG
1 CTTGAAGGTAACTGATGTTCAG
34315830 C
1 C
34315831 CTTAACCTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.31
Consensus pattern (22 bp):
CTTGAAGGTAACTGATGTTCAG
Found at i:34333626 original size:21 final size:21
Alignment explanation
Indices: 34333602--34333672 Score: 72
Period size: 21 Copynumber: 3.2 Consensus size: 21
34333592 TATCACGAAC
34333602 TCAGACCACAACTCAATGAGT
1 TCAGACCACAACTCAATGAGT
* **
34333623 TCAGACGTCACATATATC-ATGAAC
1 TCAGAC--CACA-A-CTCAATGAGT
34333647 TCAGACCACAACTCAATGAGT
1 TCAGACCACAACTCAATGAGT
34333668 TCAGA
1 TCAGA
34333673 TTTCATAATT
Statistics
Matches: 39, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
20 2 0.05
21 16 0.41
22 4 0.10
23 4 0.10
24 11 0.28
25 2 0.05
ACGTcount: A:0.38, C:0.27, G:0.14, T:0.21
Consensus pattern (21 bp):
TCAGACCACAACTCAATGAGT
Found at i:34333634 original size:45 final size:45
Alignment explanation
Indices: 34333584--34333672 Score: 169
Period size: 45 Copynumber: 2.0 Consensus size: 45
34333574 CAAAACATGT
34333584 GTCACATATATCACGAACTCAGACCACAACTCAATGAGTTCAGAC
1 GTCACATATATCACGAACTCAGACCACAACTCAATGAGTTCAGAC
*
34333629 GTCACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGA
1 GTCACATATATCACGAACTCAGACCACAACTCAATGAGTTCAGA
34333673 TTTCATAATT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.38, C:0.27, G:0.13, T:0.21
Consensus pattern (45 bp):
GTCACATATATCACGAACTCAGACCACAACTCAATGAGTTCAGAC
Found at i:34333650 original size:24 final size:24
Alignment explanation
Indices: 34333584--34333652 Score: 65
Period size: 24 Copynumber: 3.0 Consensus size: 24
34333574 CAAAACATGT
*
34333584 GTCACATATATCACGAACTCAGAC
1 GTCACATATATCATGAACTCAGAC
* **
34333608 --CACA-A-CTCAATGAGTTCAGAC
1 GTCACATATATC-ATGAACTCAGAC
34333629 GTCACATATATCATGAACTCAGAC
1 GTCACATATATCATGAACTCAGAC
34333653 CACAACTCAA
Statistics
Matches: 33, Mismatches: 7, Indels: 10
0.66 0.14 0.20
Matches are distributed among these distances:
20 2 0.06
21 10 0.30
22 4 0.12
23 4 0.12
24 11 0.33
25 2 0.06
ACGTcount: A:0.38, C:0.28, G:0.13, T:0.22
Consensus pattern (24 bp):
GTCACATATATCATGAACTCAGAC
Found at i:34346675 original size:46 final size:46
Alignment explanation
Indices: 34346575--34346697 Score: 154
Period size: 46 Copynumber: 2.8 Consensus size: 46
34346565 TGTAACCCGC
*
34346575 CCATAAGTGAACTCGGACTCAACTCAACGAG--C-TAAGTTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAAGTTTACAT
*
34346618 -C-TCAA--GAACTCGGACTCAACTCAACGAGTTCGGACA-TTTGCAT
1 CCAT-AAGTGAACTCGGACTCAACTCAACGAGTTCGGA-AGTTTACAT
34346661 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
34346698 TGCCCAAATA
Statistics
Matches: 69, Mismatches: 2, Indels: 15
0.80 0.02 0.17
Matches are distributed among these distances:
40 23 0.33
41 1 0.01
42 4 0.06
43 7 0.10
44 4 0.06
45 1 0.01
46 29 0.42
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAAGTTTACAT
Found at i:34353416 original size:25 final size:25
Alignment explanation
Indices: 34353382--34353432 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
34353372 AAGAAACTAA
34353382 ACATAAAGTAAGAGTAATTCGAGAT
1 ACATAAAGTAAGAGTAATTCGAGAT
34353407 ACATAAAGTAAGAGTAATTCGAGAT
1 ACATAAAGTAAGAGTAATTCGAGAT
34353432 A
1 A
34353433 GTTTAAAAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.49, C:0.08, G:0.20, T:0.24
Consensus pattern (25 bp):
ACATAAAGTAAGAGTAATTCGAGAT
Found at i:34360394 original size:33 final size:33
Alignment explanation
Indices: 34360352--34360419 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
34360342 CCAAATTGAG
34360352 TAAGTTTTCTTGTCTCGTTTTTAGTAATTTTAA
1 TAAGTTTTCTTGTCTCGTTTTTAGTAATTTTAA
34360385 TAAGTTTTCTTGTCTCGTTTTTAGTAATTTTAA
1 TAAGTTTTCTTGTCTCGTTTTTAGTAATTTTAA
34360418 TA
1 TA
34360420 TTTTTAAAAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.22, C:0.09, G:0.12, T:0.57
Consensus pattern (33 bp):
TAAGTTTTCTTGTCTCGTTTTTAGTAATTTTAA
Found at i:34369101 original size:21 final size:21
Alignment explanation
Indices: 34369077--34369147 Score: 106
Period size: 21 Copynumber: 3.4 Consensus size: 21
34369067 TCCAGCACAA
* *
34369077 GCGTGTCCTACGATCACACGG
1 GCGTGTCCTAAGGTCACACGG
*
34369098 GCGTGTCCTAAGGTCACATGG
1 GCGTGTCCTAAGGTCACACGG
*
34369119 GCGTGTCCTAGGGTCACACGG
1 GCGTGTCCTAAGGTCACACGG
34369140 GCGTGTCC
1 GCGTGTCC
34369148 CTTGGACCAC
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 45 1.00
ACGTcount: A:0.15, C:0.30, G:0.34, T:0.21
Consensus pattern (21 bp):
GCGTGTCCTAAGGTCACACGG
Found at i:34369713 original size:21 final size:21
Alignment explanation
Indices: 34369687--34369727 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
34369677 TTCATGAATC
34369687 ATTAATGAGTTCTCTAACTCT
1 ATTAATGAGTTCTCTAACTCT
34369708 ATTAATGAGTTCTCTAACTC
1 ATTAATGAGTTCTCTAACTC
34369728 ATCAATGGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.29, C:0.20, G:0.10, T:0.41
Consensus pattern (21 bp):
ATTAATGAGTTCTCTAACTCT
Found at i:34371668 original size:47 final size:46
Alignment explanation
Indices: 34371594--34371866 Score: 188
Period size: 46 Copynumber: 5.8 Consensus size: 46
34371584 AGGGTATAAT
* * *
34371594 GTCGATGCCATGTCCCAAACATAGTCTTACACTGGCTCATCCATCAA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCC-TCAA
* * * *
34371641 GTCGATGCCATGTCCCAAACATGGTCTTACACTAGTTTTCA-CAT-ATCT
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTAG--CTCATCCTCA--A
* * *
34371689 GTACTGATGCCAAGTCCCAGACATGGTCTTACACT-GTCACAT-CTCGTA
1 GT-C-GATGCCATGTCCCAGACATGGTCTTACACTAG-CTCATCCTC-AA
* * * *
34371737 GCCGCTG-CATGTCCCAGACAT-GTCTTACACTGGCTTACAT-CTCGAG
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGC-T-CATCCTC-AA
* * *
34371783 GCCGATG-CATGTCCCAGACAT-TTCTTACATTAGCTC-TCGTCTCAA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATC--CTCAA
34371828 TGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC
1 -GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC
34371867 TTATAATGTG
Statistics
Matches: 182, Mismatches: 26, Indels: 35
0.75 0.11 0.14
Matches are distributed among these distances:
43 1 0.01
44 12 0.07
45 16 0.09
46 50 0.27
47 49 0.27
48 21 0.12
49 5 0.03
50 28 0.15
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.29
Consensus pattern (46 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCCTCAA
Found at i:34371792 original size:46 final size:46
Alignment explanation
Indices: 34371702--34371907 Score: 188
Period size: 46 Copynumber: 4.5 Consensus size: 46
34371692 CTGATGCCAA
* *
34371702 GTCCCAGACATGGTCTTACACT-G-TCACATCTCGTA-GCCGCTGCAT
1 GTCCCAGACAT-GTCTTACACTAGCTCTCATCTCG-AGGCCGATGCAT
*
34371747 GTCCCAGACATGTCTTACACTGGCT-TACATCTCGAGGCCGATGCAT
1 GTCCCAGACATGTCTTACACTAGCTCT-CATCTCGAGGCCGATGCAT
* * * * * *
34371793 GTCCCAGACATTTCTTACATTAGCTCTCGTCTCAATGTCGATGCCAT
1 GTCCCAGACATGTCTTACACTAGCTCTCATCTCGAGGCCGATG-CAT
* * * **
34371840 GTCCCAGACATGGTCTTACACTAGCTCTTATAAT-GTGGATGATGCAT
1 GTCCCAGACAT-GTCTTACACTAGCTCTCAT-CTCGAGGCCGATGCAT
*
34371887 GTCCCAGACTTGTCTTACACT
1 GTCCCAGACATGTCTTACACT
34371908 GGCACACAAA
Statistics
Matches: 133, Mismatches: 20, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
44 10 0.08
45 13 0.10
46 61 0.46
47 28 0.21
48 20 0.15
49 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.30
Consensus pattern (46 bp):
GTCCCAGACATGTCTTACACTAGCTCTCATCTCGAGGCCGATGCAT
Found at i:34371888 original size:47 final size:48
Alignment explanation
Indices: 34371786--34371907 Score: 144
Period size: 47 Copynumber: 2.6 Consensus size: 48
34371776 TCTCGAGGCC
* * *
34371786 GATGCATGTCCCAGACATTTCTTACATTAGCTCTCGTCTCAATGTCGAT
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTC-TATCAATGTCGAT
* *
34371835 G--CCATGTCCCAGACATGGTCTTACACTAGCTCT-TAT-AATGTGGAT
1 GATGCATGTCCCAGACAT-GTCTTACACTAGCTCTCTATCAATGTCGAT
*
34371880 GATGCATGTCCCAGACTTGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
34371908 GGCACACAAA
Statistics
Matches: 63, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
45 9 0.14
46 12 0.19
47 27 0.43
48 14 0.22
49 1 0.02
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.33
Consensus pattern (48 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCTATCAATGTCGAT
Found at i:34372283 original size:30 final size:30
Alignment explanation
Indices: 34372247--34372324 Score: 147
Period size: 30 Copynumber: 2.6 Consensus size: 30
34372237 ATAATTGGGA
*
34372247 AAAATGACCATTTTTCCCTTAGGCTTTCAC
1 AAAATGACCATTTTACCCTTAGGCTTTCAC
34372277 AAAATGACCATTTTACCCTTAGGCTTTCAC
1 AAAATGACCATTTTACCCTTAGGCTTTCAC
34372307 AAAATGACCATTTTACCC
1 AAAATGACCATTTTACCC
34372325 CTAGACCCGA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 47 1.00
ACGTcount: A:0.31, C:0.27, G:0.09, T:0.33
Consensus pattern (30 bp):
AAAATGACCATTTTACCCTTAGGCTTTCAC
Found at i:34374204 original size:36 final size:36
Alignment explanation
Indices: 34374152--34374224 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
34374142 TAAAAATGGT
* * *
34374152 TAAACTGACTGTTTTGTCAACTACCCCAAAGTTGAA
1 TAAACTGACTATTTTGTCAACCACCCCAAAATTGAA
*
34374188 TAAATTGACTATTTTGTCAACCACCCCAAAATTGAA
1 TAAACTGACTATTTTGTCAACCACCCCAAAATTGAA
34374224 T
1 T
34374225 GACTATTGGT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.36, C:0.22, G:0.11, T:0.32
Consensus pattern (36 bp):
TAAACTGACTATTTTGTCAACCACCCCAAAATTGAA
Found at i:34378290 original size:16 final size:16
Alignment explanation
Indices: 34378249--34378290 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
34378239 AGCAAGGAGA
**
34378249 AATTTTAAATTTCGTT
1 AATTTTAAATTAAGTT
*
34378265 -ATTTTCAATTAAGTT
1 AATTTTAAATTAAGTT
34378280 AATTTTAAATT
1 AATTTTAAATT
34378291 TTTTTAATTT
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
15 12 0.57
16 9 0.43
ACGTcount: A:0.36, C:0.05, G:0.05, T:0.55
Consensus pattern (16 bp):
AATTTTAAATTAAGTT
Found at i:34390967 original size:40 final size:40
Alignment explanation
Indices: 34390923--34391155 Score: 277
Period size: 40 Copynumber: 5.8 Consensus size: 40
34390913 TAGAGGTACC
* * *
34390923 GAAGTACAAATAGGGGCACATATGTGCATTTAGGGGTATT
1 GAAGTACAAACAGGGGCACGTATGTGCATTCAGGGGTATT
** * * *
34390963 GAAGTACAAACAAAGGCACGTATGTACATTCAGGGGCACT
1 GAAGTACAAACAGGGGCACGTATGTGCATTCAGGGGTATT
* * * ** *
34391003 GAAGTACAAATAGGGGCACGCATATGCATTCAGGGACATC
1 GAAGTACAAACAGGGGCACGTATGTGCATTCAGGGGTATT
* *
34391043 GAAGTACAAACAGGGGCACATATGTGCATTCAGGGGTATC
1 GAAGTACAAACAGGGGCACGTATGTGCATTCAGGGGTATT
* * *
34391083 GAAGTACAAACAAGGGCATGTATGTGCATTCAAGGGGTAAT
1 GAAGTACAAACAGGGGCACGTATGTGCATTC-AGGGGTATT
*
34391124 GAAGTACAAATAGGGGCACGTATGTGCATTCA
1 GAAGTACAAACAGGGGCACGTATGTGCATTCA
34391156 AAGTACCGAA
Statistics
Matches: 161, Mismatches: 31, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
40 126 0.78
41 35 0.22
ACGTcount: A:0.35, C:0.16, G:0.28, T:0.21
Consensus pattern (40 bp):
GAAGTACAAACAGGGGCACGTATGTGCATTCAGGGGTATT
Found at i:34391000 original size:20 final size:20
Alignment explanation
Indices: 34390977--34391078 Score: 57
Period size: 20 Copynumber: 5.1 Consensus size: 20
34390967 TACAAACAAA
34390977 GGCACGTATGTACATTCAGG
1 GGCACGTATGTACATTCAGG
* *
34390997 GGCAC-TGAAGTACAAAT-AGG
1 GGCACGT-ATGTAC-ATTCAGG
* * *
34391017 GGCACGCATATGCATTCAGG
1 GGCACGTATGTACATTCAGG
* * **
34391037 GACATCG-AAGTACAAACAGG
1 GGCA-CGTATGTACATTCAGG
* *
34391057 GGCACATATGTGCATTCAGG
1 GGCACGTATGTACATTCAGG
34391077 GG
1 GG
34391079 TATCGAAGTA
Statistics
Matches: 57, Mismatches: 19, Indels: 12
0.65 0.22 0.14
Matches are distributed among these distances:
19 4 0.07
20 49 0.86
21 4 0.07
ACGTcount: A:0.31, C:0.20, G:0.30, T:0.19
Consensus pattern (20 bp):
GGCACGTATGTACATTCAGG
Found at i:34391166 original size:120 final size:118
Alignment explanation
Indices: 34390918--34391168 Score: 358
Period size: 120 Copynumber: 2.1 Consensus size: 118
34390908 GTTTTTAGAG
* * *
34390918 GTACCGAAGTACAAATAGGGGCACATATGTGCATTTAGGGGTATTGAAGTACAAACAAAGGCACG
1 GTACCGAAGTACAAACAGGGGCACATATGTGCATTCAGGGGTATCGAAGTACAAACAAAGGCACG
* *
34390983 TATGTACATTCAGGGGCACTGAAGTACAAATAGGGGCACGCATATGCATTCAG
66 TATGTACATTCAGGGGCAATGAAGTACAAATAGGGGCACGCATATGCATTCAA
* *
34391036 GGACATCGAAGTACAAACAGGGGCACATATGTGCATTCAGGGGTATCGAAGTACAAACAAGGGCA
1 GTAC--CGAAGTACAAACAGGGGCACATATGTGCATTCAGGGGTATCGAAGTACAAACAAAGGCA
* * * * *
34391101 TGTATGTGCATTCAAGGGGTAATGAAGTACAAATAGGGGCACGTATGTGCATTCAAA
64 CGTATGTACATTC-AGGGGCAATGAAGTACAAATAGGGGCACGCATATGCATTC-AA
34391158 GTACCGAAGTA
1 GTACCGAAGTA
34391169 AATTCACATA
Statistics
Matches: 116, Mismatches: 13, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
118 3 0.03
120 73 0.63
121 36 0.31
122 4 0.03
ACGTcount: A:0.35, C:0.16, G:0.28, T:0.21
Consensus pattern (118 bp):
GTACCGAAGTACAAACAGGGGCACATATGTGCATTCAGGGGTATCGAAGTACAAACAAAGGCACG
TATGTACATTCAGGGGCAATGAAGTACAAATAGGGGCACGCATATGCATTCAA
Found at i:34393856 original size:43 final size:41
Alignment explanation
Indices: 34393702--34393858 Score: 136
Period size: 43 Copynumber: 3.7 Consensus size: 41
34393692 GATTACTGAG
* *
34393702 ATGTGATTACATGTAAGACCATGTCTGGAACATTGGCATTGT
1 ATGTGATTACATGTAAGACCATATCTGG-ACATTGGCATCGT
** * *
34393744 ATTGTGATTACGCGTAAGACCATGTTTGGGACATTGGCATCGTT
1 A-TGTGATTACATGTAAGACCATATCT-GGACATTGGCATCG-T
* * * * *
34393788 ATATGATTTCGTGCAAGACTC-TATCTAGGACAGTGGCATCGAT
1 ATGTGATTACATGTAAGAC-CATATCT-GGACATTGGCATCG-T
*
34393831 ATGTGATAACATGTAAGACCATATCTGG
1 ATGTGATTACATGTAAGACCATATCTGG
34393859 GATATGGCAT
Statistics
Matches: 92, Mismatches: 18, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
42 4 0.04
43 83 0.90
44 5 0.05
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (41 bp):
ATGTGATTACATGTAAGACCATATCTGGACATTGGCATCGT
Found at i:34398770 original size:24 final size:24
Alignment explanation
Indices: 34398718--34398878 Score: 105
Period size: 24 Copynumber: 6.6 Consensus size: 24
34398708 AATGACTTTG
*
34398718 GCACTA-AGTGTGCGGATTTTGAATG
1 GCACTATA-TGTGCGGA-TTTGAATA
*
34398743 GCACTATATGTGCGGAATTGAATA
1 GCACTATATGTGCGGATTTGAATA
* *
34398767 GCACTATGTGTGCTGATTTGAAT-
1 GCACTATATGTGCGGATTTGAATA
* * * * *
34398790 GTCAATACGAGTGTGTGGATTTCTAA-G
1 G-CACTA-TA-TGTGCGGATTT-GAATA
* * * *
34398817 GCACTATGTGTGCGGGTTAGAATG
1 GCACTATATGTGCGGATTTGAATA
34398841 GCACTA-AGTGTGCGGATTTGAATA
1 GCACTATA-TGTGCGGATTTGAATA
*
34398865 GCACTATGTGTGCG
1 GCACTATATGTGCG
34398879 AAATCGATTG
Statistics
Matches: 104, Mismatches: 23, Indels: 19
0.71 0.16 0.13
Matches are distributed among these distances:
23 3 0.03
24 70 0.67
25 14 0.13
26 14 0.13
27 3 0.03
ACGTcount: A:0.25, C:0.13, G:0.30, T:0.32
Consensus pattern (24 bp):
GCACTATATGTGCGGATTTGAATA
Found at i:34398829 original size:74 final size:75
Alignment explanation
Indices: 34398724--34398863 Score: 187
Period size: 74 Copynumber: 1.9 Consensus size: 75
34398714 TTTGGCACTA
* *
34398724 AGTGTGCGGATTTTGAATGGCACTATATGTGCGGAATT-GAATAGCACTATGTGTGCTGATTTGA
1 AGTGTGCGGATTTTGAATGGCACTATATGTGCGG-ATTAGAATAGCACTAAGTGTGCGGATTTGA
34398788 ATGTCAATACG
65 ATGTCAATACG
* * * *
34398799 AGTGTGTGGATTTCT-AA-GGCACTATGTGTGCGGGTTAGAATGGCACTAAGTGTGCGGATTTGA
1 AGTGTGCGGATTT-TGAATGGCACTATATGTGCGGATTAGAATAGCACTAAGTGTGCGGATTTGA
34398862 AT
65 AT
34398864 AGCACTATGT
Statistics
Matches: 57, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
73 2 0.04
74 40 0.70
75 14 0.25
76 1 0.02
ACGTcount: A:0.25, C:0.11, G:0.31, T:0.33
Consensus pattern (75 bp):
AGTGTGCGGATTTTGAATGGCACTATATGTGCGGATTAGAATAGCACTAAGTGTGCGGATTTGAA
TGTCAATACG
Found at i:34408640 original size:21 final size:21
Alignment explanation
Indices: 34408614--34408654 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
34408604 CCAAATTAAG
*
34408614 TTCCACTACTTTTACCTAAAT
1 TTCCACTAATTTTACCTAAAT
34408635 TTCCACTAATTTTACCTAAA
1 TTCCACTAATTTTACCTAAA
34408655 AATAGACTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.32, C:0.27, G:0.00, T:0.41
Consensus pattern (21 bp):
TTCCACTAATTTTACCTAAAT
Found at i:34413987 original size:50 final size:50
Alignment explanation
Indices: 34413864--34414085 Score: 194
Period size: 48 Copynumber: 4.6 Consensus size: 50
34413854 CATCAAGTTT
* * * *
34413864 ATGCCATGTCCCCA-ACATGGTCTTACACT-GACTATCA-AAATC-GAGGTCG
1 ATGCCATGT-CCCAGACATGGTCTTACACTAG-CTCTCACATATCTG-TGCCG
*
34413913 ATGCCATGTCCCAGACATGCTCTTACACTAGCTCTCACATATCTGTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCTGTGCCG
* * * * ** *
34413963 ATACCATGTCCCAGAAATGGTCTTACACTAGCTCT--CGTCTCAATGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCTGTGCCG
* * * *
34414011 ATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATA-ATGTG-GCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCTGTGCCG
*
34414059 ATG-CATGTCCCAGTCAT-GTCTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
34414086 GGAACACAAA
Statistics
Matches: 141, Mismatches: 26, Indels: 15
0.77 0.14 0.08
Matches are distributed among these distances:
46 10 0.07
47 12 0.09
48 49 0.35
49 29 0.21
50 40 0.28
51 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (50 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCTGTGCCG
Found at i:34414029 original size:98 final size:94
Alignment explanation
Indices: 34413909--34414085 Score: 246
Period size: 98 Copynumber: 1.8 Consensus size: 94
34413899 CAAAATCGAG
34413909 GTCGATGCCATGTCCCAGACATGCTCTTACACTAGCTCTCACATATCTGTGCCGATACCATGTCC
1 GTCGATGCCATGTCCCAGACATGCTCTTACACTAGCTCTCACA-ATCTG-GCCGAT-CCATGTCC
34413974 CAGAAATGGTCTTACACTAGCTCTCGTCTCAAT
63 CAGAAAT-GTCTTACACTAGCTCTCGTCTCAAT
* * * * * *
34414007 GTCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAG
1 GTCGATGCCATGTCCCAGACATGCTCTTACACTAGCTCTCACAATCTGGCCGATCCATGTCCCAG
**
34414072 TCATGTCTTACACT
66 AAATGTCTTACACT
34414086 GGAACACAAA
Statistics
Matches: 71, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
94 10 0.14
95 12 0.17
96 6 0.08
97 4 0.06
98 39 0.55
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.29
Consensus pattern (94 bp):
GTCGATGCCATGTCCCAGACATGCTCTTACACTAGCTCTCACAATCTGGCCGATCCATGTCCCAG
AAATGTCTTACACTAGCTCTCGTCTCAAT
Found at i:34417784 original size:50 final size:49
Alignment explanation
Indices: 34417725--34418056 Score: 316
Period size: 50 Copynumber: 6.8 Consensus size: 49
34417715 TGATGCTAGG
*
34417725 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCT
1 GAGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCT
* * *
34417774 CGAGATATGAGAGCTAGTGTAAGACCATCTCTGGGACATGACATCAG-CT
1 -GAGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCT
* * * * *
34417823 -TGATAT--GTGTCAGTGTAAGACCATGTCTAGGACATGGCATCGGCACT
1 GAGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGC-CT
* * * * *
34417870 GATAGATGAGAACCAGTGTAAGACCATGTTTGAGACATGGCATCAGCCT
1 GAGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCT
* * * * * * *
34417919 CGATATACGAGAGTCAGTGTAAGACCATGTTTGGGACATGACAT-TGACT
1 -GAGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCT
** * * * *
34417968 TTGATGTGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT-TGACT
1 GAGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCT
** * *
34418016 TTGATGTGTGAGCCAGTGTAAGACCATGTCTGGGACATGGC
1 GAGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGC
34418057 GTTGGCACCT
Statistics
Matches: 239, Mismatches: 37, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
45 30 0.13
47 7 0.03
48 83 0.35
49 7 0.03
50 112 0.47
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (49 bp):
GAGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCT
Found at i:34427903 original size:13 final size:13
Alignment explanation
Indices: 34427885--34427911 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
34427875 TAGTTTAATC
34427885 AGTTAATTAGTTT
1 AGTTAATTAGTTT
34427898 AGTTAATTAGTTT
1 AGTTAATTAGTTT
34427911 A
1 A
34427912 ATAAACAACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (13 bp):
AGTTAATTAGTTT
Found at i:34434111 original size:28 final size:28
Alignment explanation
Indices: 34434079--34434184 Score: 124
Period size: 28 Copynumber: 3.8 Consensus size: 28
34434069 CAGAACAGAG
* * *
34434079 ATTGTGACAGAGTCACCAGATACAGATA
1 ATTGTGGCAGAGCCACCAGAAACAGATA
* * *
34434107 ATTGTGGCAGGGCCACCAAAAATAGATA
1 ATTGTGGCAGAGCCACCAGAAACAGATA
* *
34434135 TTTGTGGTAGAGCCACCAGAAACAGATA
1 ATTGTGGCAGAGCCACCAGAAACAGATA
*
34434163 TTTGTGGCAGAGCCACCA-AAAC
1 ATTGTGGCAGAGCCACCAGAAAC
34434185 GGTTCCTCCA
Statistics
Matches: 66, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
27 4 0.06
28 62 0.94
ACGTcount: A:0.37, C:0.20, G:0.24, T:0.20
Consensus pattern (28 bp):
ATTGTGGCAGAGCCACCAGAAACAGATA
Found at i:34434346 original size:26 final size:25
Alignment explanation
Indices: 34434290--34434348 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 25
34434280 ATCAACCCTA
* * *
34434290 AGGGTATAATGGTCATTTTGTACCT
1 AGGGTATAATAGTAATTTTATACCT
*
34434315 AGGGGTATAATAGTAATTTTCATACTT
1 A-GGGTATAATAGTAATTTT-ATACCT
34434342 AGGGTAT
1 AGGGTAT
34434349 TTTAGTAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
25 1 0.04
26 22 0.79
27 5 0.18
ACGTcount: A:0.29, C:0.08, G:0.24, T:0.39
Consensus pattern (25 bp):
AGGGTATAATAGTAATTTTATACCT
Found at i:34437151 original size:37 final size:37
Alignment explanation
Indices: 34437092--34437200 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
34437082 AGCTCAGACG
* * *
34437092 AAATCTCTACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
34437129 AAATCTCCACACGTAGTCATCGGGTCTTACCCAGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
34437166 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
34437201 ATATATTTCC
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:34437397 original size:46 final size:46
Alignment explanation
Indices: 34437344--34437480 Score: 177
Period size: 46 Copynumber: 3.0 Consensus size: 46
34437334 TATATATACA
* * * *
34437344 CATCTCATACATATCTCACATTAGCCATTTGGCTTGACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTGACCACATATC
* * *
34437390 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTGACCACATATC
* *
34437436 TATCTCATACACATTTCGCATTAGCCATTCAGCCTT-ACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTC-GGCTTGACCACATAT
34437481 ATACATGTTC
Statistics
Matches: 79, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
46 75 0.95
47 4 0.05
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTGACCACATATC
Found at i:34437518 original size:47 final size:47
Alignment explanation
Indices: 34437454--34437789 Score: 483
Period size: 47 Copynumber: 7.1 Consensus size: 47
34437444 ACACATTTCG
* * * *
34437454 CATTAGCCATTCAGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
34437501 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCAAATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
34437548 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
34437595 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* ** *
34437642 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTAACATTCATCA
1 CATTGGCCATTCGGCCTTAT--CAC--ATATATGCATGTTCACATTCATCA
* * *
34437693 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCATATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
34437740 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
34437787 CAT
1 CAT
34437790 AAAATCCTAA
Statistics
Matches: 261, Mismatches: 24, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
47 217 0.83
49 6 0.02
51 38 0.15
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.32
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:34437665 original size:22 final size:22
Alignment explanation
Indices: 34437544--34437618 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
34437534 GTTCAAATTC
34437544 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
34437566 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
34437590 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
34437613 ATCACA
1 ATCACA
34437619 CATACGCATG
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 16 0.40
23 7 0.17
24 7 0.17
25 10 0.25
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:34437736 original size:145 final size:141
Alignment explanation
Indices: 34437454--34437789 Score: 503
Period size: 145 Copynumber: 2.4 Consensus size: 141
34437444 ACACATTTCG
* * * * **
34437454 CATTAGCCATTCAGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* * * * *
34437519 ATCTCATATATGCATGTTCAAATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
66 ATCACATATATACAGGTTCAAATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTT
34437584 CACATTCATCA
131 CACATTCATCA
34437595 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
*
34437660 ATCACACATATATATACGGGTT-AACATTCATCACATTGGCCATTCGGCCTTATCACACATACGC
66 AT--CAC--ATATATACAGGTTCAA-ATTCATCACATTGGCCATTCGGCCTTATCACACATACGC
*
34437724 ATGTTCATATTCATCA
126 ATGTTCACATTCATCA
34437740 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACAT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACAT
34437790 AAAATCCTAA
Statistics
Matches: 177, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
141 61 0.34
143 2 0.01
144 2 0.01
145 112 0.63
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.32
Consensus pattern (141 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACATATATACAGGTTCAAATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTT
CACATTCATCA
Found at i:34441708 original size:40 final size:40
Alignment explanation
Indices: 34441656--34442326 Score: 1126
Period size: 40 Copynumber: 16.8 Consensus size: 40
34441646 CCAGCATGAT
* ** *
34441656 TGCTCTTTGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
* * *
34441696 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
* * *
34441736 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
34441776 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
34441816 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
* *
34441856 TGCTCTTCGAGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
* * * *
34441896 TGCTCTTTGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
34441936 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
* *
34441976 TGCTCTTCGGGATTTAGCCCAGAAATATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
* *
34442016 TGCTCTTCGGGACTTAGCCCAGATATATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
*
34442056 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
*
34442096 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
*
34442136 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
*
34442176 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
34442216 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
34442256 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
34442296 TGCTCTTCGGGATTTAGCCCGGATATATCAC
1 TGCTCTTCGGGATTTAGCCCGGATATATCAC
34442327 GCTCAATTCT
Statistics
Matches: 607, Mismatches: 24, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 607 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
Found at i:34443656 original size:37 final size:37
Alignment explanation
Indices: 34443597--34443705 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
34443587 AGCTCAGACG
*
34443597 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTTATCGGGTCTTACCCGGACA
* *
34443634 AAATCTCCACACGTAGTCATCGGGTCTTACCTGGACA
1 AAATCTCCACACGTAGTTATCGGGTCTTACCCGGACA
*
34443671 TAATCTCCACACGTAGTTATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTTATCGGGTCTTACCCGGA
34443706 ATATATTTCC
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTTATCGGGTCTTACCCGGACA
Found at i:34443900 original size:46 final size:46
Alignment explanation
Indices: 34443842--34443983 Score: 203
Period size: 46 Copynumber: 3.1 Consensus size: 46
34443832 CACAATATAT
* * * *
34443842 ATATACATCTCATACATATCTCACATTAGCCATTTGGCTTTACCAC
1 ATATCCATCTCATACATATTTCGCATTAGCCATTCGGCTTTACCAC
* *
34443888 ATATCCATCTCATACATGTTTCGCATTAGCCATTCGGCTTTACCTC
1 ATATCCATCTCATACATATTTCGCATTAGCCATTCGGCTTTACCAC
* * *
34443934 ATATCTATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCAC
1 ATATCCATCTCATACATATTTCGCATTAGCCATTCGGCTTTACCAC
34443980 ATAT
1 ATAT
34443984 ATACATGTTC
Statistics
Matches: 85, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 85 1.00
ACGTcount: A:0.27, C:0.30, G:0.08, T:0.35
Consensus pattern (46 bp):
ATATCCATCTCATACATATTTCGCATTAGCCATTCGGCTTTACCAC
Found at i:34444020 original size:47 final size:47
Alignment explanation
Indices: 34443957--34444343 Score: 522
Period size: 47 Copynumber: 8.1 Consensus size: 47
34443947 ACACATTTCG
* * * **
34443957 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * * * *
34444004 CATTGGACATTCGGCCTTATCTCATATATGCATGTTCACATTGATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
34444051 CATTGGCCATTCGACCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
34444098 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ** *
34444145 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C--ACATACGCATGTTCACATTCATCA
* ***
34444196 CATTGGCCATTCAGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
*
34444247 CATTGGCCATTCGACCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
34444294 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
34444341 CAT
1 CAT
34444344 AAAATCCTAA
Statistics
Matches: 305, Mismatches: 27, Indels: 16
0.88 0.08 0.05
Matches are distributed among these distances:
47 220 0.72
49 2 0.01
51 83 0.27
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:34444270 original size:196 final size:188
Alignment explanation
Indices: 34443957--34444343 Score: 612
Period size: 196 Copynumber: 2.0 Consensus size: 188
34443947 ACACATTTCG
* *
34443957 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGACATTCGGCCTT
1 CATTAGCCATTCGGCCTTACCACATATATACAGGTTCACATTCATCACATTGGACATTCAGCCTT
* * * *
34444022 ATCTCATATATGCATGTTCACATTGATCACATTGGCCATTCGACCTTATCACACATACGCATGTT
66 ATCACATATATACAGGTTCACATTCATCACATTGGCCATTCGACCTTATCACACATACGCATGTT
34444087 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
131 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
34444145 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCACATTGGCCATTCAG
1 CATTAGCCATTCGGCC-T-T-AC-CACATATATACAGGTTCACATTCATCACATTGGACATTCAG
*
34444210 CCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGACCTTATCACACATA
62 CCTTAT--CAC--ATATATACAGGTTCACATTCATCACATTGGCCATTCGACCTTATCACACATA
34444275 CGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATC
123 CGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATC
34444340 A
188 A
34444341 CAT
1 CAT
34444344 AAAATCCTAA
Statistics
Matches: 181, Mismatches: 10, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
188 15 0.08
189 1 0.01
190 1 0.01
191 2 0.01
192 43 0.24
194 2 0.01
196 117 0.65
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.31
Consensus pattern (188 bp):
CATTAGCCATTCGGCCTTACCACATATATACAGGTTCACATTCATCACATTGGACATTCAGCCTT
ATCACATATATACAGGTTCACATTCATCACATTGGCCATTCGACCTTATCACACATACGCATGTT
CACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:34444344 original size:23 final size:23
Alignment explanation
Indices: 34444269--34444344 Score: 59
Period size: 23 Copynumber: 3.3 Consensus size: 23
34444259 GACCTTATCA
34444269 CACATACGCATGTTCACATTCAT
1 CACATACGCATGTTCACATTCAT
** * *
34444292 CACATTGGCCA--TTCGGCCTT-AT
1 CACATACG-CATGTTC-ACATTCAT
34444314 CACACATACGCATGTTCACATTCAT
1 --CACATACGCATGTTCACATTCAT
34444339 CACATA
1 CACATA
34444345 AAATCCTAAA
Statistics
Matches: 38, Mismatches: 8, Indels: 14
0.63 0.13 0.23
Matches are distributed among these distances:
22 5 0.13
23 17 0.45
24 11 0.29
25 5 0.13
ACGTcount: A:0.29, C:0.32, G:0.11, T:0.29
Consensus pattern (23 bp):
CACATACGCATGTTCACATTCAT
Done.