Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 109 of 352
Found at i:34883709 original size:50 final size:50
Alignment explanation
Indices: 34883646--34883881 Score: 224
Period size: 50 Copynumber: 4.7 Consensus size: 50
34883636 CAACAATTCG
* *
34883646 ATACACGTTGTAGCTTGCACTTAGTACTACACACGTGACCTAACCATCTA
1 ATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTA
* * * * ** *
34883696 ATACACGTAGTAGCTTGCACTTAGAACTACACACGTGATCGAA-GTTGTCA
1 ATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCT-A
* * * * * ** *
34883746 GGTACGCATAGTAGCATGCACTTAGTACTACACAAGCAACCTAACTATCTA
1 -ATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTA
* *
34883797 GTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCTAAAACCATCTTA
1 ATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCT--AACCATC-TA
* *
34883850 A-ACACATAGTAGCCTGCACATAGTACTACACA
1 ATACACGTAGTAGCCTGCACTTAGTACTACACA
34883882 TGTGTTCTCA
Statistics
Matches: 148, Mismatches: 32, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
49 2 0.01
50 74 0.50
51 34 0.23
52 36 0.24
53 2 0.01
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (50 bp):
ATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTA
Found at i:34883839 original size:151 final size:151
Alignment explanation
Indices: 34883596--34883881 Score: 382
Period size: 151 Copynumber: 1.9 Consensus size: 151
34883586 GAAGCTATCT
* * * * * *
34883596 GGTACGCATAGTAGCCTCCACTTGGTACTACAAATGCGACCAACAATTCGATACACGTTGTAGCT
1 GGTACGCATAGTAGCATCCACTTAGTACTACAAATGCAACCAACAATTAGATACACGTAGTAGCC
* * * *
34883661 TGCACTTAGTACTACACACGTGACCT-AACCATC-TAATACACGTAGTAGCTTGCACTTAGAACT
66 TACACTTAGTACTACACACGTGACCTAAACCATCTTAA-ACACATAGTAGCCTGCACATAGAACT
34883724 ACACACGTGATCGAAGTTGTCA
130 ACACACGTGATCGAAGTTGTCA
* *
34883746 GGTACGCATAGTAGCATGCACTTAGTACTACACAA-GCAACCTAACTATCTAG-TACACGTAGTA
1 GGTACGCATAGTAGCATCCACTTAGTACTACA-AATGCAACC-AACAAT-TAGATACACGTAGTA
*
34883809 GCCTACACTTAGTACTACACACGTGACCTAAAACCATCTTAAACACATAGTAGCCTGCACATAGT
63 GCCTACACTTAGTACTACACACGTGACCT-AAACCATCTTAAACACATAGTAGCCTGCACATAGA
34883874 ACTACACA
127 ACTACACA
34883882 TGTGTTCTCA
Statistics
Matches: 117, Mismatches: 13, Indels: 9
0.84 0.09 0.06
Matches are distributed among these distances:
150 34 0.29
151 44 0.38
152 2 0.02
153 34 0.29
154 3 0.03
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (151 bp):
GGTACGCATAGTAGCATCCACTTAGTACTACAAATGCAACCAACAATTAGATACACGTAGTAGCC
TACACTTAGTACTACACACGTGACCTAAACCATCTTAAACACATAGTAGCCTGCACATAGAACTA
CACACGTGATCGAAGTTGTCA
Found at i:34892523 original size:46 final size:46
Alignment explanation
Indices: 34892471--34892648 Score: 180
Period size: 46 Copynumber: 3.7 Consensus size: 46
34892461 AACCCGCCCG
*
34892471 TAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
*
34892517 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACATCTC-
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCATC-CA
* * * * * *
34892567 TCGAACTCGTACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCA
1 T--AAGT-GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
*
34892616 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGG
34892649 ATGCCCAAAT
Statistics
Matches: 109, Mismatches: 12, Indels: 22
0.76 0.08 0.15
Matches are distributed among these distances:
46 58 0.53
47 3 0.03
48 4 0.04
49 6 0.06
50 6 0.06
51 4 0.04
52 3 0.03
53 25 0.23
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
Found at i:34894077 original size:50 final size:49
Alignment explanation
Indices: 34893976--34894207 Score: 189
Period size: 50 Copynumber: 4.6 Consensus size: 49
34893966 CTGGTAAGCA
* * *
34893976 TAGTAGCCTACACTTAGTACTACACATGCGACTAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACTAACAATCTGATACACG
* * * *
34894025 TAGTAGCCTGTATTTAGTACTACCCATGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CTAACAATCTGATACACG
* * * *
34894075 TAGTAGCCTGCACTTAGTACTACACATGTGA-TCAA-AGTTGTCGAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACT-AACA-ATCT-GA-TACACG
* * * * * * **
34894126 TCGTAGCCTGCATTTAGTACTACACACGTGACCTAAAACCATCTTAAACATA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CT--AACAATCTGATACACG
* *
34894178 TAGTAGCTTGCACATAGTACTACACATGTG
1 TAGTAGCCTGCACTTAGTACTACACATGTG
34894208 TTCTCACAAT
Statistics
Matches: 143, Mismatches: 31, Indels: 15
0.76 0.16 0.08
Matches are distributed among these distances:
48 1 0.01
49 30 0.21
50 46 0.32
51 32 0.22
52 28 0.20
53 2 0.01
54 4 0.03
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.28
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACTAACAATCTGATACACG
Found at i:34895358 original size:51 final size:50
Alignment explanation
Indices: 34895164--34895462 Score: 235
Period size: 50 Copynumber: 5.9 Consensus size: 50
34895154 CATCCTTGTA
* ** * * *
34895164 ACCGAAGCTATCTAGTACGCATAGTAGCCTGTACTTGGTACTACACATGCG
1 ACCGAA-CTATCTAGTACACATAGTAGCCTACACTTAGTACTACACACGTG
* ** ** * *
34895215 ACC-AACAATCCGGTACATGTAGTAGCTTGCACTTAGTACTACACACGTG
1 ACCGAACTATCTAGTACACATAGTAGCCTACACTTAGTACTACACACGTG
* * * * * *
34895264 ACCTAACCACCTAATACACGTAGTAGCCTGCACTTAGTACTACACACGTG
1 ACCGAACTATCTAGTACACATAGTAGCCTACACTTAGTACTACACACGTG
* * * * * * **
34895314 ATCGAAGT-TGTTGGGTACGCATAGTAGCCTACACTTAGTACTACACAAGCA
1 ACCGAACTAT-CT-AGTACACATAGTAGCCTACACTTAGTACTACACACGTG
*
34895365 ACCTAACTATCTAGTACACATAGTAGCCTACACTTAGTACTACACACGTG
1 ACCGAACTATCTAGTACACATAGTAGCCTACACTTAGTACTACACACGTG
* * * *
34895415 ACCTAAAACCATCTTA-AACACATAGTAGCCTACACATAGTACTACACA
1 ACC--GAACTATC-TAGTACACATAGTAGCCTACACTTAGTACTACACA
34895463 TGTGTTCTCA
Statistics
Matches: 196, Mismatches: 45, Indels: 13
0.77 0.18 0.05
Matches are distributed among these distances:
49 36 0.18
50 82 0.42
51 39 0.20
52 37 0.19
53 2 0.01
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (50 bp):
ACCGAACTATCTAGTACACATAGTAGCCTACACTTAGTACTACACACGTG
Found at i:34895358 original size:101 final size:101
Alignment explanation
Indices: 34895234--34895415 Score: 274
Period size: 101 Copynumber: 1.8 Consensus size: 101
34895224 CCGGTACATG
* * * ** * *
34895234 TAGTAGCTTGCACTTAGTACTACACACGTGACCTAACCACCTAATACACGTAGTAGCCTGCACTT
1 TAGTAGCCTACACTTAGTACTACACAAGCAACCTAACCACCTAATACACATAGTAGCCTACACTT
34895299 AGTACTACACACGTGATCGAAGTTGTTGGGTACGCA
66 AGTACTACACACGTGATCGAAGTTGTTGGGTACGCA
* * *
34895335 TAGTAGCCTACACTTAGTACTACACAAGCAACCTAACTATCTAGTACACATAGTAGCCTACACTT
1 TAGTAGCCTACACTTAGTACTACACAAGCAACCTAACCACCTAATACACATAGTAGCCTACACTT
34895400 AGTACTACACACGTGA
66 AGTACTACACACGTGA
34895416 CCTAAAACCA
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
101 71 1.00
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.25
Consensus pattern (101 bp):
TAGTAGCCTACACTTAGTACTACACAAGCAACCTAACCACCTAATACACATAGTAGCCTACACTT
AGTACTACACACGTGATCGAAGTTGTTGGGTACGCA
Found at i:34895458 original size:52 final size:50
Alignment explanation
Indices: 34895333--34895462 Score: 172
Period size: 52 Copynumber: 2.6 Consensus size: 50
34895323 GTTGGGTACG
* *
34895333 CATAGTAGCCTACACTTAGTACTACACAAGCAACCTAACTATCTAGTACA
1 CATAGTAGCCTACACTTAGTACTACACAAGCAACCTAACCATCTAGAACA
* **
34895383 CATAGTAGCCTACACTTAGTACTACACACGTGACCTAAAACCATCTTA-AACA
1 CATAGTAGCCTACACTTAGTACTACACAAGCAACCT--AACCATC-TAGAACA
*
34895435 CATAGTAGCCTACACATAGTACTACACA
1 CATAGTAGCCTACACTTAGTACTACACA
34895463 TGTGTTCTCA
Statistics
Matches: 71, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
50 33 0.46
52 36 0.51
53 2 0.03
ACGTcount: A:0.38, C:0.28, G:0.10, T:0.23
Consensus pattern (50 bp):
CATAGTAGCCTACACTTAGTACTACACAAGCAACCTAACCATCTAGAACA
Found at i:34899561 original size:26 final size:26
Alignment explanation
Indices: 34899512--34899562 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
34899502 CAATGCCTCA
* ** *
34899512 CACACTAAGTGCCATTCTCGATATCG
1 CACAATAAGTGCCACACTCAATATCG
34899538 CACAATAAGTGCCACACTCAATATC
1 CACAATAAGTGCCACACTCAATATC
34899563 TTGCACACTG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.33, C:0.31, G:0.12, T:0.24
Consensus pattern (26 bp):
CACAATAAGTGCCACACTCAATATCG
Found at i:34899578 original size:24 final size:24
Alignment explanation
Indices: 34899550--34899595 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
34899540 CAATAAGTGC
*
34899550 CACACTCAATATCTTGCACACTGT
1 CACACTCAATATCTCGCACACTGT
*
34899574 CACACTCGATATCTCGCACACT
1 CACACTCAATATCTCGCACACT
34899596 AAGTGTCATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.28, C:0.37, G:0.09, T:0.26
Consensus pattern (24 bp):
CACACTCAATATCTCGCACACTGT
Found at i:34899631 original size:40 final size:40
Alignment explanation
Indices: 34899587--34899691 Score: 129
Period size: 40 Copynumber: 2.6 Consensus size: 40
34899577 ACTCGATATC
* * * **
34899587 TCGCACACTAAGTGTCATACATGGCTGAAGCTATCTCAAA
1 TCGCACACTAAGTGCCACACATAGCCAAAGCTATCTCAAA
* * *
34899627 TCGCACACTAAGTGCCACATATAGCCAAAGCTATGTCGAA
1 TCGCACACTAAGTGCCACACATAGCCAAAGCTATCTCAAA
*
34899667 TCGCACACTAAGTGCCACAAATAGC
1 TCGCACACTAAGTGCCACACATAGC
34899692 AGATTTGTTG
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 56 1.00
ACGTcount: A:0.34, C:0.28, G:0.17, T:0.21
Consensus pattern (40 bp):
TCGCACACTAAGTGCCACACATAGCCAAAGCTATCTCAAA
Found at i:34902134 original size:42 final size:42
Alignment explanation
Indices: 34902019--34902172 Score: 161
Period size: 42 Copynumber: 3.6 Consensus size: 42
34902009 TACCACACCA
* * * *
34902019 ATGCCATATCCCAGATATGGTCTTACAT-AGGATCTCGTTTCG
1 ATGCCATATCTCAGATATGGTCTTACATGA-AATCTCATATCG
* * * * *
34902061 ATACCAATAGC-CTAGCTATGATCTTAAATGAAATCTCATATCG
1 ATGCC-ATATCTC-AGATATGGTCTTACATGAAATCTCATATCG
*
34902104 ATGCCATATCTCAGATATGGTCTTACATGAAGTCTCATAAT-G
1 ATGCCATATCTCAGATATGGTCTTACATGAAATCTCAT-ATCG
34902146 ATGCCATATCTCAGATATGGTCTTACA
1 ATGCCATATCTCAGATATGGTCTTACA
34902173 CATAGTCTTG
Statistics
Matches: 93, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
42 59 0.63
43 33 0.35
44 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (42 bp):
ATGCCATATCTCAGATATGGTCTTACATGAAATCTCATATCG
Found at i:34913687 original size:43 final size:43
Alignment explanation
Indices: 34913612--34913800 Score: 292
Period size: 43 Copynumber: 4.4 Consensus size: 43
34913602 GATAAATCCC
* * *
34913612 GCAGGCCTAGTGCTGGT-AT-TATATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
34913653 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
34913696 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
34913739 GCAGGCTTCGTGCCGGTGATGTGTATTTGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
34913782 GCAGGCATAATGCCGGTGA
1 GCAGGCTTAGTGCCGGTGA
34913801 AATGATATGT
Statistics
Matches: 138, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
41 15 0.11
42 2 0.01
43 121 0.88
ACGTcount: A:0.13, C:0.24, G:0.34, T:0.30
Consensus pattern (43 bp):
GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:34920836 original size:27 final size:27
Alignment explanation
Indices: 34920788--34920946 Score: 157
Period size: 27 Copynumber: 5.9 Consensus size: 27
34920778 GCGAGGCTGC
* *
34920788 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
*
34920815 TAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
34920841 CAGATATATATGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
34920868 CAGATAATCGTGGCATAGCCACCAGA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
34920895 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
** *
34920922 CAGATAATCATGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
34920947 GACGCTTCCT
Statistics
Matches: 111, Mismatches: 13, Indels: 16
0.79 0.09 0.11
Matches are distributed among these distances:
26 9 0.08
27 97 0.87
28 5 0.05
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:34920881 original size:54 final size:54
Alignment explanation
Indices: 34920806--34920946 Score: 221
Period size: 54 Copynumber: 2.6 Consensus size: 54
34920796 GTGACGAAGT
* * *
34920806 CACCAGATATAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATATGGCAGAGC
1 CACCAGAT-CAGATAATCGTGGCATAGCCACCAGAACAGATATATATGGCAGAGC
*
34920860 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATATGGCAGAGC
*
34920914 CACCAGATCAGATAATCATGGCATAGCCACCAG
1 CACCAGATCAGATAATCGTGGCATAGCCACCAG
34920947 GACGCTTCCT
Statistics
Matches: 81, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
53 4 0.05
54 77 0.95
ACGTcount: A:0.36, C:0.24, G:0.23, T:0.17
Consensus pattern (54 bp):
CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATATGGCAGAGC
Found at i:34922590 original size:26 final size:26
Alignment explanation
Indices: 34922559--34922666 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
34922549 TGAAATGCCC
* *
34922559 ATCATGGAATATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
34922585 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
34922611 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
34922637 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
34922663 ATCA
1 ATCA
34922667 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:34922616 original size:52 final size:52
Alignment explanation
Indices: 34922559--34922666 Score: 207
Period size: 52 Copynumber: 2.1 Consensus size: 52
34922549 TGAAATGCCC
34922559 ATCATGGAATATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAATATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
*
34922611 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAATATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
34922663 ATCA
1 ATCA
34922667 ATTTGTACCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 55 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (52 bp):
ATCATGGAATATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
Found at i:34932138 original size:114 final size:114
Alignment explanation
Indices: 34931938--34932165 Score: 438
Period size: 114 Copynumber: 2.0 Consensus size: 114
34931928 TTTGGTTATA
* *
34931938 TGTGTCATTATTAATGTGGCAAAATGTGTTGGCCTATAATGGATTATTGTTCAAATTGTATATAG
1 TGTGTCATTATTAATGTGGCAAAATGTGTTGGCCTATAATGGATTATTGTTCAAACTGTACATAG
34932003 CCACGAATGATGGCTTATGTTGATTACATGTTTATTCATGTGTTAATGC
66 CCACGAATGATGGCTTATGTTGATTACATGTTTATTCATGTGTTAATGC
34932052 TGTGTCATTATTAATGTGGCAAAATGTGTTGGCCTATAATGGATTATTGTTCAAACTGTACATAG
1 TGTGTCATTATTAATGTGGCAAAATGTGTTGGCCTATAATGGATTATTGTTCAAACTGTACATAG
34932117 CCACGAATGATGGCTTATGTTGATTACATGTTTATTCATGTGTTAATGC
66 CCACGAATGATGGCTTATGTTGATTACATGTTTATTCATGTGTTAATGC
34932166 CTTCTTGTGA
Statistics
Matches: 112, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
114 112 1.00
ACGTcount: A:0.27, C:0.11, G:0.21, T:0.40
Consensus pattern (114 bp):
TGTGTCATTATTAATGTGGCAAAATGTGTTGGCCTATAATGGATTATTGTTCAAACTGTACATAG
CCACGAATGATGGCTTATGTTGATTACATGTTTATTCATGTGTTAATGC
Found at i:34933040 original size:12 final size:12
Alignment explanation
Indices: 34933009--34933042 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
34932999 AAAAAAAAGT
*
34933009 GTTCATCATTTG
1 GTTCATCCTTTG
34933021 GTTCATCCTTTG
1 GTTCATCCTTTG
34933033 GTTCATCCTT
1 GTTCATCCTT
34933043 GGCCGAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.12, C:0.24, G:0.15, T:0.50
Consensus pattern (12 bp):
GTTCATCCTTTG
Found at i:34934393 original size:79 final size:81
Alignment explanation
Indices: 34934257--34934439 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
34934247 TCGAATGATG
* *
34934257 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
34934321 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
34934336 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
34934398 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
34934416 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
34934440 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:34934455 original size:40 final size:40
Alignment explanation
Indices: 34934258--34934441 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
34934248 CGAATGATGT
* * * *
34934258 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
34934298 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
34934338 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
34934376 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
34934417 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
34934442 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:34934463 original size:79 final size:79
Alignment explanation
Indices: 34934310--34934474 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
34934300 GGACTAAGAT
* **
34934310 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
34934375 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
34934389 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
34934452 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
34934468 CCGAAGG
1 CCGAAGG
34934475 TACGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:34942479 original size:79 final size:81
Alignment explanation
Indices: 34942343--34942525 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
34942333 TCGAATGATG
* *
34942343 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
34942407 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
34942422 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
34942484 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
34942502 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
34942526 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:34942541 original size:40 final size:40
Alignment explanation
Indices: 34942344--34942527 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
34942334 CGAATGATGT
* * * *
34942344 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
34942384 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
34942424 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
34942462 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
34942503 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
34942528 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:34942549 original size:79 final size:79
Alignment explanation
Indices: 34942396--34942560 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
34942386 GGACTAAGAT
* **
34942396 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
34942461 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
34942475 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
34942538 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
34942554 CCGAAGG
1 CCGAAGG
34942561 TACGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:34969195 original size:47 final size:47
Alignment explanation
Indices: 34969126--34969526 Score: 653
Period size: 47 Copynumber: 8.6 Consensus size: 47
34969116 ATGGGTTGGT
34969126 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
34969173 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
34969220 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
34969267 AATGTGATAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
34969314 AATGCGATAGTGTATATATGTGATAAGGCCTAATGGTCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
34969361 AATGTG-AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
34969407 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
34969454 AATGTGAAAGTGTATATATGTGA-CAGGGCGACTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
34969500 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
34969527 TCCCGAAGGG
Statistics
Matches: 333, Mismatches: 19, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
46 82 0.25
47 251 0.75
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:34969359 original size:22 final size:22
Alignment explanation
Indices: 34969284--34969359 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
34969274 TAGTGTATAT
*
34969284 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGTCG
* * * * **
34969306 ATGTGATGAATGCGATAGTGTATAT
1 ATGTGAT-AAGGC-CTAATG-GTCG
34969331 ATGTGATAAGGCCTAATGGTCG
1 ATGTGATAAGGCCTAATGGTCG
34969353 ATGTGAT
1 ATGTGAT
34969360 GAATGTGAAG
Statistics
Matches: 38, Mismatches: 13, Indels: 6
0.67 0.23 0.11
Matches are distributed among these distances:
22 15 0.39
23 8 0.21
24 8 0.21
25 7 0.18
ACGTcount: A:0.29, C:0.11, G:0.30, T:0.30
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGTCG
Found at i:34969454 original size:140 final size:141
Alignment explanation
Indices: 34969126--34969526 Score: 671
Period size: 140 Copynumber: 2.9 Consensus size: 141
34969116 ATGGGTTGGT
34969126 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
34969191 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
66 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
34969256 CCGATGTGATG
131 CCGATGTGATG
* * *
34969267 AATGTGATAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGATAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * *
34969332 TGTGATAAGGCCTAATGGTCGATGTGATGAATGTG-AAGTGTATATATGTGATAAGGCCTAATGG
66 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
34969396 CCGATGTGATG
131 CCGATGTGATG
34969407 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * * *
34969472 TGTGA-CAGGGCGACTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
34969527 TCCCGAAGGG
Statistics
Matches: 240, Mismatches: 19, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
139 21 0.09
140 125 0.52
141 94 0.39
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (141 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
CCGATGTGATG
Found at i:34976146 original size:46 final size:46
Alignment explanation
Indices: 34976093--34976268 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
34976083 TGGTTGAGCA
34976093 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
34976139 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
34976184 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
34976232 CCCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
34976269 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:34976249 original size:93 final size:93
Alignment explanation
Indices: 34976090--34976261 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
34976080 GGATGGTTGA
* * * *
34976090 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
34976155 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
34976183 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
34976248 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
34976262 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:34978714 original size:28 final size:29
Alignment explanation
Indices: 34978678--34978740 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
34978668 TCACTATGAC
* *
34978678 CTTTGTTCTATTGTT-TGCTTTTCCTTTT
1 CTTTTTTCTATTGTTGTACTTTTCCTTTT
**
34978706 CTTTTTTCTATTGTTGTACTTTTGTTTTT
1 CTTTTTTCTATTGTTGTACTTTTCCTTTT
34978735 CTTTTT
1 CTTTTT
34978741 GGACGCCTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 14 0.47
29 16 0.53
ACGTcount: A:0.05, C:0.14, G:0.10, T:0.71
Consensus pattern (29 bp):
CTTTTTTCTATTGTTGTACTTTTCCTTTT
Found at i:34984842 original size:18 final size:19
Alignment explanation
Indices: 34984811--34984846 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
34984801 TTTTAGGGTT
*
34984811 TTTTATTTATTTTTTATTA
1 TTTTATTTAATTTTTATTA
34984830 TTTT-TTTAATTTTTATT
1 TTTTATTTAATTTTTATT
34984847 CTGGTTTTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (19 bp):
TTTTATTTAATTTTTATTA
Found at i:34985232 original size:42 final size:42
Alignment explanation
Indices: 34985126--34985240 Score: 142
Period size: 43 Copynumber: 2.7 Consensus size: 42
34985116 TACCGTACCA
* * * *
34985126 ATGCCATATCCTAGATATGGTCTTACATGTAATCTCGTATTG
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATCG
* *
34985168 ATGCCAATAGCCCAGCTATGGTCTTACACG-AAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGTAA-TCTCATATCG
*
34985211 ATTCCATATCCCAGATATGGTCTTACACGT
1 ATGCCATATCCCAGATATGGTCTTACACGT
34985241 TAACTCAATA
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
42 29 0.48
43 32 0.52
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATCG
Found at i:34989001 original size:25 final size:25
Alignment explanation
Indices: 34988973--34989023 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
34988963 GCATATCAAC
* * *
34988973 TTATAGCTTGTGAGAGCATACTGAT
1 TTATAGCTCGAGAGAGCATACCGAT
*
34988998 TTATAGCTCGAGTGAGCATACCGAT
1 TTATAGCTCGAGAGAGCATACCGAT
34989023 T
1 T
34989024 CACAACTCTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (25 bp):
TTATAGCTCGAGAGAGCATACCGAT
Found at i:34997023 original size:24 final size:24
Alignment explanation
Indices: 34996991--34997038 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
34996981 GATTACGTGT
34996991 AAGACCATGTCTAGGACATTGGCA
1 AAGACCATGTCTAGGACATTGGCA
34997015 AAGACCATGTCTAGGACATTGGCA
1 AAGACCATGTCTAGGACATTGGCA
34997039 TTGTTAATCG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.21
Consensus pattern (24 bp):
AAGACCATGTCTAGGACATTGGCA
Found at i:34997058 original size:67 final size:67
Alignment explanation
Indices: 34996947--34997081 Score: 182
Period size: 67 Copynumber: 2.0 Consensus size: 67
34996937 TGATTACCTA
* * * *
34996947 AAAGACCATGTCTGGGACATTGGCATTGTATTGTGATTACGTGTAAGACCATGTCTAGGACATTG
1 AAAGACCATGTCTAGGACATTGGCATTGTAATGCGATTACGTGTAAGACCATGTCTAGGACAGTG
34997012 GC
66 GC
** * *
34997014 AAAGACCATGTCTAGGACATTGGCATTGTTAAT-CGATTTTGTGTAAGACCCTGTCTGGGACAGT
1 AAAGACCATGTCTAGGACATTGGCATTG-TAATGCGATTACGTGTAAGACCATGTCTAGGACAGT
34997078 GGC
65 GGC
34997081 A
1 A
34997082 TCGATATGTG
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
67 56 0.95
68 3 0.05
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.30
Consensus pattern (67 bp):
AAAGACCATGTCTAGGACATTGGCATTGTAATGCGATTACGTGTAAGACCATGTCTAGGACAGTG
GC
Found at i:35005016 original size:49 final size:49
Alignment explanation
Indices: 35004958--35005085 Score: 152
Period size: 49 Copynumber: 2.6 Consensus size: 49
35004948 TGTGTGTCAA
* * * * *
35004958 TGTAAGACCTATCTAGGACATAGCATCGACAC-CGATAGATGAGAGT-TAG
1 TGTAAGACCTGTATGGGACATGGCATCGAC-CTCGATAGATGAAAGTCT-G
* *
35005007 TGTAAGACCTGTATGGGACATGGCATCGGCCTCGATATATGAAAGTCTG
1 TGTAAGACCTGTATGGGACATGGCATCGACCTCGATAGATGAAAGTCTG
*
35005056 TGTAAGACCTGTTTGGGACATGGCATCGAC
1 TGTAAGACCTGTATGGGACATGGCATCGAC
35005086 TTTGATGTGC
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
48 1 0.01
49 66 0.97
50 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (49 bp):
TGTAAGACCTGTATGGGACATGGCATCGACCTCGATAGATGAAAGTCTG
Found at i:35008344 original size:6 final size:6
Alignment explanation
Indices: 35008326--35008414 Score: 67
Period size: 6 Copynumber: 14.5 Consensus size: 6
35008316 AAGAAACATT
* * *
35008326 ATCAGA A-CTAGA ATCAGA ATCAAA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* *
35008375 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATC
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATC
35008415 GGTATCATAT
Statistics
Matches: 65, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
5 4 0.06
6 53 0.82
7 6 0.09
8 2 0.03
ACGTcount: A:0.48, C:0.16, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:35008399 original size:25 final size:24
Alignment explanation
Indices: 35008371--35008418 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
35008361 GTGACAGAAT
* *
35008371 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATC-GGTAA
35008396 CAGAATCAAAATCAGAATCGGTA
1 CAGAATCAAAATCAGAATCGGTA
35008419 TCATATAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.46, C:0.17, G:0.19, T:0.19
Consensus pattern (24 bp):
CAGAATCAAAATCAGAATCGGTAA
Found at i:35008420 original size:31 final size:31
Alignment explanation
Indices: 35008310--35008421 Score: 120
Period size: 31 Copynumber: 3.6 Consensus size: 31
35008300 TAACCCATTA
* * *
35008310 CAGAATAAGAAACATTATCA-G-AACTAGAAT
1 CAGAATCAGAATCAGTATCAGGTAAC-AGAAT
* * * *
35008340 CAGAATCAAAATCAGAATTAGGTGACAGAAT
1 CAGAATCAGAATCAGTATCAGGTAACAGAAT
35008371 CAGAATCAGAATCAGTATCAGGTAACAGAAT
1 CAGAATCAGAATCAGTATCAGGTAACAGAAT
* *
35008402 CAAAATCAGAATCGGTATCA
1 CAGAATCAGAATCAGTATCA
35008422 TATAAGAAAA
Statistics
Matches: 67, Mismatches: 13, Indels: 3
0.81 0.16 0.04
Matches are distributed among these distances:
30 14 0.21
31 51 0.76
32 2 0.03
ACGTcount: A:0.48, C:0.15, G:0.17, T:0.20
Consensus pattern (31 bp):
CAGAATCAGAATCAGTATCAGGTAACAGAAT
Found at i:35008624 original size:27 final size:26
Alignment explanation
Indices: 35008582--35008683 Score: 123
Period size: 27 Copynumber: 3.8 Consensus size: 26
35008572 GCTCAGTTAT
* *
35008582 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
35008609 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
35008635 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* * *
35008663 TAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
35008684 TTAACAGAAT
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 7 0.10
27 53 0.79
28 7 0.10
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:35008867 original size:22 final size:22
Alignment explanation
Indices: 35008842--35008906 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
35008832 GCAAATACGT
* *
35008842 TTGGCATACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
35008864 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
35008886 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
35008907 AAGGCTTTAA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:35009384 original size:27 final size:27
Alignment explanation
Indices: 35009326--35009628 Score: 403
Period size: 27 Copynumber: 11.3 Consensus size: 27
35009316 GGGGCAAAAT
* * *
35009326 GGTAATTTTACCCCACA-AGGTA-TCTC
1 GGTAATTCTACCCTACAGGGGTATTC-C
* *
35009352 GGTAATTCTACCCTATAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTCC
* * *
35009379 GATAATTCTACCCTACAGGAGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTCC
* *
35009406 GGTAATTCTACACTACAAGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTCC
35009433 GGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTCC
35009460 GGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTCC
* *
35009487 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTCC
35009514 GGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTCC
* *
35009541 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTCC
* *
35009568 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTCC
* * * *
35009595 GGTATTTCTACCATACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTCC
35009622 GGTAATT
1 GGTAATT
35009629 TTGTAAATCG
Statistics
Matches: 248, Mismatches: 27, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
26 14 0.06
27 233 0.94
28 1 0.00
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.32
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTCC
Found at i:35009644 original size:81 final size:81
Alignment explanation
Indices: 35009326--35009628 Score: 446
Period size: 81 Copynumber: 3.8 Consensus size: 81
35009316 GGGGCAAAAT
* * * * * *
35009326 GGTAATTTTACCCCACAA-GGTATCTCGGTAATTCTACCCTATAGGGGTATTGCGATAATTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTCCGGTAATTCTAC
*
35009390 CCTACAGGAGTATTTC
66 CCTACAGGGGTATTTC
* *
35009406 GGTAATTCTACACTACAAGGGTATTCCGGTAATTCTACCCTACAGGGGTATTCCGGTAATTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTCCGGTAATTCTAC
*
35009471 CCTACAGGGGTATTCC
66 CCTACAGGGGTATTTC
*
35009487 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTCCGATAATTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTCCGGTAATTCTAC
35009552 CCTACAGGGGTATTTC
66 CCTACAGGGGTATTTC
* * * * * *
35009568 GATAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCATACAAGGGTATTTCGGTAATT
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTCCGGTAATT
35009629 TTGTAAATCG
Statistics
Matches: 201, Mismatches: 21, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
80 15 0.07
81 186 0.93
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.32
Consensus pattern (81 bp):
GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTCCGGTAATTCTAC
CCTACAGGGGTATTTC
Found at i:35013206 original size:28 final size:28
Alignment explanation
Indices: 35013140--35013268 Score: 168
Period size: 28 Copynumber: 4.5 Consensus size: 28
35013130 CATGAGATTG
* * **
35013140 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
35013169 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
35013197 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
35013226 GCACTAAAGTGTGCGAGTTTGATTATATA
1 GCACT-AAGTGTGCGAGTTTGATTATATA
*
35013255 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
35013269 GACTTACTAT
Statistics
Matches: 89, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
28 40 0.45
29 28 0.31
30 21 0.24
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:35013254 original size:58 final size:57
Alignment explanation
Indices: 35013140--35013268 Score: 179
Period size: 58 Copynumber: 2.2 Consensus size: 57
35013130 CATGAGATTG
*
35013140 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
* * * *
35013197 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACT-AAGTGTGCAAGTTTGATTATATA
*
35013255 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
35013269 GACTTACTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
57 26 0.41
58 38 0.59
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
Found at i:35021240 original size:29 final size:28
Alignment explanation
Indices: 35021193--35021262 Score: 77
Period size: 28 Copynumber: 2.5 Consensus size: 28
35021183 CATGATATTG
** *
35021193 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCAAGTTT-AATTACATA
* *
35021222 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTTAATTACATA
*
35021250 ACACTAAGTGTGC
1 GCACTAAGTGTGC
35021263 GGACTTACTA
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
28 18 0.51
29 17 0.49
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTTAATTACATA
Found at i:35040126 original size:28 final size:28
Alignment explanation
Indices: 35040081--35040145 Score: 114
Period size: 28 Copynumber: 2.4 Consensus size: 28
35040071 GTTAGCCGAA
*
35040081 TTAATGTGT-CATGTTTTATGACAATAT
1 TTAATTTGTCCATGTTTTATGACAATAT
35040108 TTAATTTGTCCATGTTTTATGACAATAT
1 TTAATTTGTCCATGTTTTATGACAATAT
35040136 TTAATTTGTC
1 TTAATTTGTC
35040146 TTAGCTTAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
27 8 0.22
28 28 0.78
ACGTcount: A:0.28, C:0.09, G:0.12, T:0.51
Consensus pattern (28 bp):
TTAATTTGTCCATGTTTTATGACAATAT
Found at i:35044719 original size:21 final size:21
Alignment explanation
Indices: 35044694--35044734 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
35044684 ATTATCTAGT
35044694 CATTAAA-ACTATGTTTTTAGC
1 CATTAAACAC-ATGTTTTTAGC
35044715 CATTAAATCACATGTTTTTA
1 CATTAAA-CACATGTTTTTA
35044735 ATAAAAGCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 7 0.39
22 9 0.50
23 2 0.11
ACGTcount: A:0.34, C:0.15, G:0.07, T:0.44
Consensus pattern (21 bp):
CATTAAACACATGTTTTTAGC
Found at i:35049342 original size:15 final size:15
Alignment explanation
Indices: 35049322--35049352 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
35049312 GACGGTTCCG
35049322 TGTGCTCTGATTCAT
1 TGTGCTCTGATTCAT
35049337 TGTGCTCTGATTCAT
1 TGTGCTCTGATTCAT
35049352 T
1 T
35049353 ACTGATACAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.19, G:0.19, T:0.48
Consensus pattern (15 bp):
TGTGCTCTGATTCAT
Found at i:35058208 original size:46 final size:47
Alignment explanation
Indices: 35058099--35058223 Score: 153
Period size: 46 Copynumber: 2.6 Consensus size: 47
35058089 CCATGTCTTC
* * *
35058099 GATATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCT
1 GATATGGACTTACATGACTCATTCCTGTCTCCAAAGCC--A-ATATATCT
* * *
35058149 AATATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCT
1 GATATGGACTTACATGACTCATTCCTGTCTCCAAAGCCAATATATCT
*
35058195 GATATGGACTTACATGACTCATTTCTGTC
1 GATATGGACTTACATGACTCATTCCTGTC
35058224 CTGTCCTGTA
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
46 33 0.51
50 32 0.49
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.36
Consensus pattern (47 bp):
GATATGGACTTACATGACTCATTCCTGTCTCCAAAGCCAATATATCT
Found at i:35062711 original size:19 final size:19
Alignment explanation
Indices: 35062683--35062721 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
35062673 AGAGCGAAAG
35062683 AAACGAG-AAACGGGCCAA
1 AAACGAGAAAACGGGCCAA
*
35062701 AAACAGAGAAAATGGGCCAA
1 AAAC-GAGAAAACGGGCCAA
35062721 A
1 A
35062722 GTACGAACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 3 0.17
20 11 0.61
ACGTcount: A:0.54, C:0.18, G:0.26, T:0.03
Consensus pattern (19 bp):
AAACGAGAAAACGGGCCAA
Found at i:35070146 original size:22 final size:21
Alignment explanation
Indices: 35070112--35070152 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
35070102 GTTGAAATGT
35070112 CACAAGGGCGTGTTGCCCCTCC
1 CACAAGGGCGTG-TGCCCCTCC
* *
35070134 CACACGGGTGTGTGCCCCT
1 CACAAGGGCGTGTGCCCCT
35070153 GTGTTACAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.12, C:0.39, G:0.29, T:0.20
Consensus pattern (21 bp):
CACAAGGGCGTGTGCCCCTCC
Found at i:35072426 original size:49 final size:49
Alignment explanation
Indices: 35072311--35072439 Score: 145
Period size: 49 Copynumber: 2.6 Consensus size: 49
35072301 GTATTAGTAC
*
35072311 AAGACCATGTCTGGGACATGGCATCGGCATGGATATACGAGAGCTAGTGT
1 AAGACCATGT-TGGGACATGGCATCGGCATCGATATACGAGAGCTAGTGT
* * ** *
35072361 AAGACCATGTTGGGGACATGGCGTCGGCCTCGAT-TTTGATAG-TCAGTGT
1 AAGACCATGTT-GGGACATGGCATCGGCATCGATATACGAGAGCT-AGTGT
*
35072410 AAGACCATGTATGGGACATGGAATCGGCAT
1 AAGACCATGT-TGGGACATGGCATCGGCAT
35072440 TCTACCCCAT
Statistics
Matches: 67, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
48 1 0.01
49 36 0.54
50 30 0.45
ACGTcount: A:0.26, C:0.18, G:0.32, T:0.24
Consensus pattern (49 bp):
AAGACCATGTTGGGACATGGCATCGGCATCGATATACGAGAGCTAGTGT
Found at i:35079143 original size:39 final size:40
Alignment explanation
Indices: 35079098--35079265 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
35079088 CGGGGTTTAG
* * *
35079098 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
35079137 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
35079177 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
35079217 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
35079258 CCGGATAT
1 CCGGATAT
35079266 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:35079248 original size:41 final size:40
Alignment explanation
Indices: 35079121--35079265 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
35079111 CTCGCACAAG
* * * * *
35079121 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
35079161 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
35079201 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
35079242 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
35079266 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:35080499 original size:30 final size:31
Alignment explanation
Indices: 35080460--35080520 Score: 115
Period size: 30 Copynumber: 2.0 Consensus size: 31
35080450 TCCTTCCTCC
35080460 TTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTTAGAATTTTCGGCCAAAAGAAATGAA
35080491 TTCC-TAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTTAGAATTTTCGGCCAAAAGAAATGAA
35080521 AAAGGATGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 26 0.87
31 4 0.13
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.28
Consensus pattern (31 bp):
TTCCTTAGAATTTTCGGCCAAAAGAAATGAA
Found at i:35087195 original size:39 final size:40
Alignment explanation
Indices: 35087150--35087317 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
35087140 CGGGGTTTAG
* * *
35087150 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
35087189 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
35087229 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
35087269 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
35087310 CCGGATAT
1 CCGGATAT
35087318 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:35087300 original size:41 final size:40
Alignment explanation
Indices: 35087173--35087317 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
35087163 CTCGCACAAG
* * * * *
35087173 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
35087213 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
35087253 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
35087294 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
35087318 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:35088545 original size:38 final size:37
Alignment explanation
Indices: 35088503--35088577 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
35088493 CAAGAACTCC
35088503 TTCCTCCTTCCTTAGAATTTTCAGCCAAAAGAAATGAA
1 TTCCT-CTTCCTTAGAATTTTCAGCCAAAAGAAATGAA
*
35088541 TTCCTCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCTTCCTTAGAATTTTCAGCCAAAAGAAATGAA
35088578 AAAGGATGAA
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
37 31 0.86
38 5 0.14
ACGTcount: A:0.33, C:0.23, G:0.12, T:0.32
Consensus pattern (37 bp):
TTCCTCTTCCTTAGAATTTTCAGCCAAAAGAAATGAA
Found at i:35091633 original size:50 final size:50
Alignment explanation
Indices: 35091502--35091739 Score: 239
Period size: 50 Copynumber: 4.8 Consensus size: 50
35091492 AGCCGAAGCT
* * * *
35091502 ATCTGATACGCATAGTAGCCTGCACTTAGTACTACATATGCGACC-AACA
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAACC
* * * *
35091551 ATCCGATAAACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTCACC
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAACC
* * * * *
35091601 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTC
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAA-CC
** * * *
35091652 AT-TGAGTATGCATAGTAGCCTGCACTTAGTACTACACATACGACTTAA-C
1 ATCTGA-TACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAACC
* * *
35091701 AGTATGGTACACGTAGTAGCCTGCACATAGTACTACACA
1 A-TCTGATACACGTAGTAGCCTGCACTTAGTACTACACA
35091740 CGTGTACTCA
Statistics
Matches: 155, Mismatches: 29, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
49 41 0.26
50 76 0.49
51 38 0.25
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.25
Consensus pattern (50 bp):
ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAACC
Found at i:35093427 original size:15 final size:15
Alignment explanation
Indices: 35093403--35093433 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
35093393 AATTATTTTA
35093403 TTACAAAATTTCACT
1 TTACAAAATTTCACT
*
35093418 TTACATAATTTCACT
1 TTACAAAATTTCACT
35093433 T
1 T
35093434 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.19, G:0.00, T:0.45
Consensus pattern (15 bp):
TTACAAAATTTCACT
Found at i:35093719 original size:50 final size:50
Alignment explanation
Indices: 35093644--35093977 Score: 253
Period size: 50 Copynumber: 6.6 Consensus size: 50
35093634 CTAGTACGCA
* * *
35093644 TAGTAGCCTGCACTAAGTACTACACAAGTGACCTATCAATCTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATCTGGTACACG
* * * * * * *
35093694 TAGTATCCTACACTTAGTACTACACACGTGACTTAACCATCTGATACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATCTGGTACACG
* * * * ** * * *
35093744 TAGCAGCCTACACTTAGTACTGCACATGTGATCGAAGTTAA-C-GGCTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCTA-TCAATCTGG-TACACG
* * * * * *
35093795 TAGTATCCTGCACTTAGTACTACACACATGACTTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATCTGGTACACG
* * ** * ** *
35093845 TAGTAGCCTACACTTAGTACTACATACGTGATCGAAGTTAA-C-GGATATGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCTA-TCAATCTGG-TACACG
* * * *
35093896 TAGTAGCTTGCACTTAGTACTACACATGCGGCCTATCAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATCTGGTACACG
35093946 TAGTAGCCTGCACTTAGTACTACACACGTGAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGAC
35093978 TCACAACGGA
Statistics
Matches: 210, Mismatches: 64, Indels: 20
0.71 0.22 0.07
Matches are distributed among these distances:
49 4 0.02
50 137 0.65
51 67 0.32
52 2 0.01
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATCTGGTACACG
Found at i:35093814 original size:51 final size:51
Alignment explanation
Indices: 35093736--35093921 Score: 178
Period size: 51 Copynumber: 3.7 Consensus size: 51
35093726 TTAACCATCT
* * * * *
35093736 GATACACATAGCAGCCTACACTTAGTACTGCACATGTGATCGAAGTTAACG
1 GATACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAACG
* * * * ** * *
35093787 GCTACGCATAGTATCCTGCACTTAGTACTACACACATGA-CTTAA-CCATCT
1 GATACGCATAGTAGCCTGCACTTAGTACTACACACGTGATC-GAAGTTAACG
* * * *
35093837 GATACACGTAGTAGCCTACACTTAGTACTACATACGTGATCGAAGTTAACG
1 GATACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAACG
* *
35093888 GATATGCATAGTAGCTTGCACTTAGTACTACACA
1 GATACGCATAGTAGCCTGCACTTAGTACTACACA
35093922 TGCGGCCTAT
Statistics
Matches: 101, Mismatches: 31, Indels: 6
0.73 0.22 0.04
Matches are distributed among these distances:
50 37 0.37
51 64 0.63
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.26
Consensus pattern (51 bp):
GATACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAACG
Found at i:35093816 original size:101 final size:101
Alignment explanation
Indices: 35093694--35093976 Score: 395
Period size: 101 Copynumber: 2.8 Consensus size: 101
35093684 CTGGTACATG
* * *
35093694 TAGTATCCTACACTTAGTACTACACACGTGACTTAACCATCTGATACACATAGCAGCCTACACTT
1 TAGTATCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTT
* * *
35093759 AGTACTGCACATGTGATCGAAGTTAACGGCTACGCA
66 AGTACTACACACGTGATCGAAGTTAACGGATACGCA
*
35093795 TAGTATCCTGCACTTAGTACTACACACATGACTTAACCATCTGATACACGTAGTAGCCTACACTT
1 TAGTATCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTT
* *
35093860 AGTACTACATACGTGATCGAAGTTAACGGATATGCA
66 AGTACTACACACGTGATCGAAGTTAACGGATACGCA
* * * * * * * * * *
35093896 TAGTAGCTTGCACTTAGTACTACACATGCGGCCTATCAATCTGGTACACGTAGTAGCCTGCACTT
1 TAGTATCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTT
35093961 AGTACTACACACGTGA
66 AGTACTACACACGTGA
35093977 CTCACAACGG
Statistics
Matches: 161, Mismatches: 21, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
101 161 1.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (101 bp):
TAGTATCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTT
AGTACTACACACGTGATCGAAGTTAACGGATACGCA
Found at i:35102485 original size:23 final size:23
Alignment explanation
Indices: 35102459--35102533 Score: 59
Period size: 23 Copynumber: 3.3 Consensus size: 23
35102449 CGCCTTATCA
35102459 CACATTCACATGTTCACATTCAT
1 CACATTCACATGTTCACATTCAT
* *
35102482 CACATTGC-CA--TTCGGCCTT-AT
1 CACATT-CACATGTTC-ACATTCAT
*
35102503 CACACATACACATGTTCACATTCAT
1 --CACATTCACATGTTCACATTCAT
35102528 CACATT
1 CACATT
35102534 GGCCATTCGG
Statistics
Matches: 38, Mismatches: 6, Indels: 16
0.63 0.10 0.27
Matches are distributed among these distances:
21 5 0.13
22 4 0.11
23 20 0.53
24 4 0.11
25 5 0.13
ACGTcount: A:0.29, C:0.32, G:0.07, T:0.32
Consensus pattern (23 bp):
CACATTCACATGTTCACATTCAT
Found at i:35102564 original size:47 final size:47
Alignment explanation
Indices: 35102318--35102856 Score: 687
Period size: 47 Copynumber: 11.6 Consensus size: 47
35102308 CCCTTCGGGA
* * *
35102318 CTTATCACATTTATACACT-TCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
*
35102365 C-TATCAC--ATATACA-CTTCACATTCATCAC--TGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
35102406 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTC-GC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
*
35102452 CTTATCACACAT-TCACATGTTCACATTCATCACATT-GCCATTCGGC
1 CTTATCACATATAT-ACATGTTCACATTCATCACATTGGCCATTCGGC
* *
35102498 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* * *
35102545 CTTATCTCATATATGCATGTTCACATTCATCACATTGGTCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
35102592 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
35102639 CTTATCACAATATATACACT-TTCACATTAATCACATTGGCCATTCGAC
1 CTTATCAC-ATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
35102687 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
35102734 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
35102781 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCA-TAGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
35102827 CTTATCACATATATACACT-TTCACTATTCA
1 CTTATCACATATATACA-TGTTCAC-ATTCA
35102857 AATATACTTC
Statistics
Matches: 450, Mismatches: 28, Indels: 28
0.89 0.06 0.06
Matches are distributed among these distances:
41 13 0.03
42 5 0.01
43 12 0.03
44 12 0.03
45 22 0.05
46 104 0.23
47 240 0.53
48 41 0.09
49 1 0.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
Found at i:35104254 original size:53 final size:55
Alignment explanation
Indices: 35104155--35104271 Score: 211
Period size: 53 Copynumber: 2.1 Consensus size: 55
35104145 TTATAGTTTA
35104155 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACA-TT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACAGTT
35104209 TTGCCCATGCTTCTTATTTTATT-TTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACA-GTT
35104264 TTGCCCAT
1 TTGCCCAT
35104272 CATCCCTTGT
Statistics
Matches: 61, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
53 28 0.46
54 23 0.38
55 10 0.16
ACGTcount: A:0.23, C:0.24, G:0.09, T:0.44
Consensus pattern (55 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACAGTT
Found at i:35105522 original size:54 final size:54
Alignment explanation
Indices: 35105375--35105539 Score: 224
Period size: 54 Copynumber: 3.0 Consensus size: 54
35105365 ACGTGTATCC
**
35105375 TTGCCTTAT-GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGGACCT
1 TTGCCTTATAGAACTCACCAATGCCATGCCTTGGCATGGTCTTACAT-GATACCT
* * **
35105429 TTGCCTTATAGTAACTCACCAATGCCATGTCTTGACATGGTCTTACATGATTTCT
1 TTGCCTTATAG-AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGATACCT
* *
35105484 TTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCT
1 TTGCCTTATAGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGATA-CCT
35105539 T
1 T
35105540 ATCTTACCAA
Statistics
Matches: 96, Mismatches: 12, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
54 44 0.46
55 18 0.19
56 34 0.35
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (54 bp):
TTGCCTTATAGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGATACCT
Found at i:35105754 original size:91 final size:91
Alignment explanation
Indices: 35105518--35105778 Score: 248
Period size: 95 Copynumber: 2.8 Consensus size: 91
35105508 CATGCCTTGG
*
35105518 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAACATGGTCTTACATGGTAT
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAACATGGTCTTACATGGTAT
*
35105583 CATTGTCTTAGTGCCAATGCCACATCTT
66 CCTTGTCTTAGTG-CAATGCCACATC-T
* * * * *** *
35105611 GATGTGGTCTTACATGG-ACTCCTTAATCAATGCC-GATGCCATG-TCTTGACATGGTCTTCCAT
1 CA--TGGTCTTACATGGTA-TCCTT-ATC-TTACCAAATGCCATGTTCCAAACATGGTCTTACAT
* * * *
35105673 GATTTCCTTGCCTTA-TAG-AACTTGTCA-ATGC-
61 GGTATCCTTGTCTTAGT-GCAA--TGCCACAT-CT
35105704 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAACATGGTCTTACATGGTAT
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAACATGGTCTTACATGGTAT
35105769 CCTTGTCTTA
66 CCTTGTCTTA
35105779 CCAAATGTCA
Statistics
Matches: 131, Mismatches: 25, Indels: 26
0.72 0.14 0.14
Matches are distributed among these distances:
89 3 0.02
90 11 0.08
91 45 0.34
92 1 0.01
93 4 0.03
94 4 0.03
95 49 0.37
96 11 0.08
97 3 0.02
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (91 bp):
CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAACATGGTCTTACATGGTAT
CCTTGTCTTAGTGCAATGCCACATCT
Found at i:35105758 original size:47 final size:47
Alignment explanation
Indices: 35105704--35105806 Score: 188
Period size: 47 Copynumber: 2.2 Consensus size: 47
35105694 TTGTCAATGC
35105704 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
* *
35105751 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGTCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
35105798 CATGGTCTT
1 CATGGTCTT
35105807 TTTTAGTCAA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 54 1.00
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
Found at i:35111272 original size:49 final size:46
Alignment explanation
Indices: 35111141--35111616 Score: 670
Period size: 47 Copynumber: 10.1 Consensus size: 46
35111131 TATTTGAATA
* *
35111141 AATGTGAAACTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAA-TGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
35111188 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAA-TGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
35111235 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAA-TG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
35111284 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAA-TG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
35111333 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-ATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
35111380 AATGTGACATGCATATATGAGATAAGGCCG-ATGGCCAATGTGATG
1 AATGTGAAATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
35111425 AATGTGAACATGTGTATGT-TGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-ATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
35111471 AATGTGAACATGTGTATGTGTGATAAGG-CGAATGGCCAATGTGATG
1 AATGTGAA-ATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
35111517 AATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-ATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
35111564 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAA-TGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
35111611 GATGTG
1 AATGTG
35111617 GAAGCGTATA
Statistics
Matches: 399, Mismatches: 22, Indels: 16
0.91 0.05 0.04
Matches are distributed among these distances:
45 32 0.08
46 102 0.26
47 172 0.43
49 92 0.23
50 1 0.00
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.28
Consensus pattern (46 bp):
AATGTGAAATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:35116157 original size:68 final size:66
Alignment explanation
Indices: 35116078--35116233 Score: 165
Period size: 64 Copynumber: 2.3 Consensus size: 66
35116068 AGTGCACATC
* * *
35116078 ATGTGTACAAGAGAGCTACGAGGCATTATGATGTAGCTAAGTCACATGGGTGATACTA-TG-TGT
1 ATGTG-ACAAGAGAGCTACGAGG-A-TAT-ATGTAGCTAAGTCACATGCGTGATACTAGTGAAGG
35116141 ACACA
62 ACACA
* * * *
35116146 ATGTAGACAAGAGAGCTACG-GGATATATGTAGCTAGGTCGCATGCGTGGTTCTAGGTGAAGGAC
1 ATGT-GACAAGAGAGCTACGAGGATATATGTAGCTAAGTCACATGCGTGATACTA-GTGAAGGAC
*
35116210 ACC
64 ACA
35116213 ATGTGACAAGAGAGCTACGAG
1 ATGTGACAAGAGAGCTACGAG
35116234 ATAAACTGAC
Statistics
Matches: 75, Mismatches: 8, Indels: 11
0.80 0.09 0.12
Matches are distributed among these distances:
64 23 0.31
65 3 0.04
66 18 0.24
67 12 0.16
68 18 0.24
69 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.30, T:0.23
Consensus pattern (66 bp):
ATGTGACAAGAGAGCTACGAGGATATATGTAGCTAAGTCACATGCGTGATACTAGTGAAGGACAC
A
Found at i:35120469 original size:42 final size:42
Alignment explanation
Indices: 35120381--35120471 Score: 98
Period size: 42 Copynumber: 2.2 Consensus size: 42
35120371 TCATTTACCT
* * **
35120381 GATGCCATAGTCCAACTATGGTCTTACACAAAGTCTCGTATG
1 GATGCCATAGTCCAACTATGGTCTTACACAAAGTCACATAAC
35120423 GATGCCAT-GTCCCAGAC-ATGGTCTTACACGAAA-TCACATAAC
1 GATGCCATAGT-CCA-ACTATGGTCTTACAC-AAAGTCACATAAC
35120465 GATGCCA
1 GATGCCA
35120472 AGGCCATTTC
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
41 2 0.05
42 35 0.83
43 5 0.12
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (42 bp):
GATGCCATAGTCCAACTATGGTCTTACACAAAGTCACATAAC
Found at i:35120547 original size:48 final size:48
Alignment explanation
Indices: 35120424--35120554 Score: 190
Period size: 48 Copynumber: 2.7 Consensus size: 48
35120414 TCTCGTATGG
* **
35120424 ATGCCATGTCCCAGACATGGTCTTACACGAAATCACATAACGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAACGATGCCA
* * * *
35120472 AGGCCATTTCCCAGATATGGTCTTACATGGGATCACATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAACGATGCCA
*
35120520 ATGCCATGTCCTAGACATGGTCTTACATGGGATCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCA
35120555 TAATGCCATA
Statistics
Matches: 72, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 72 1.00
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAACGATGCCA
Found at i:35120580 original size:37 final size:37
Alignment explanation
Indices: 35120536--35120620 Score: 107
Period size: 37 Copynumber: 2.3 Consensus size: 37
35120526 TGTCCTAGAC
* *
35120536 ATGGTCTTACATGGGATCATAATGCCATAGCCCAGCT
1 ATGGTCTTACATGGCATCACAATGCCATAGCCCAGCT
* * * * *
35120573 ATTGTCTTTCATGTCATTACGATGCCATAGCCCAGCT
1 ATGGTCTTACATGGCATCACAATGCCATAGCCCAGCT
35120610 ATGGTCTTACA
1 ATGGTCTTACA
35120621 CGTACTCACA
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.32
Consensus pattern (37 bp):
ATGGTCTTACATGGCATCACAATGCCATAGCCCAGCT
Found at i:35123473 original size:18 final size:18
Alignment explanation
Indices: 35123433--35123467 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
35123423 CTGCTCACGC
*
35123433 AAGCTGATAGTCAGGACA
1 AAGCTGACAGTCAGGACA
35123451 AAGCTGACAGTCAGGAC
1 AAGCTGACAGTCAGGAC
35123468 TTAGCTACAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.20, G:0.29, T:0.14
Consensus pattern (18 bp):
AAGCTGACAGTCAGGACA
Found at i:35125447 original size:20 final size:20
Alignment explanation
Indices: 35125422--35125463 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
35125412 AATATGCAAG
35125422 TATGTCAATTATAGCTTCTA
1 TATGTCAATTATAGCTTCTA
35125442 TATGTCAATTATAGCTTCTA
1 TATGTCAATTATAGCTTCTA
35125462 TA
1 TA
35125464 ATTGCAATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.31, C:0.14, G:0.10, T:0.45
Consensus pattern (20 bp):
TATGTCAATTATAGCTTCTA
Found at i:35128055 original size:40 final size:40
Alignment explanation
Indices: 35127973--35128196 Score: 292
Period size: 40 Copynumber: 5.5 Consensus size: 40
35127963 ACCCAAGTAT
* * *
35127973 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATTC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
35128012 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
35128052 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
35128092 CTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCAAAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* *
35128135 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
35128175 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
35128197 CATCCGAATA
Statistics
Matches: 163, Mismatches: 15, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
39 12 0.07
40 115 0.71
41 1 0.01
43 35 0.21
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:35128169 original size:83 final size:80
Alignment explanation
Indices: 35127973--35128196 Score: 308
Period size: 83 Copynumber: 2.8 Consensus size: 80
35127963 ACCCAAGTAT
* * * * *
35127973 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATTCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
**
35128037 CACTAGCATGAATGC
66 CACTAGCAAAAATGC
* *
35128052 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
35128116 CAACTACTCGCAAAAATGC
66 C-ACTA---GCAAAAATGC
*
35128135 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
35128197 CATCCGAATA
Statistics
Matches: 128, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
79 13 0.10
80 48 0.38
83 67 0.52
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCAAAAATGC
Found at i:35136248 original size:40 final size:36
Alignment explanation
Indices: 35136186--35136290 Score: 97
Period size: 40 Copynumber: 2.7 Consensus size: 36
35136176 GGATTTAGCC
* *
35136186 GGATATAG-CAACTCGCACAAATGCCTTCGGGTCTTAGCCC
1 GGATATAGTC-ACTAGCA-AAATGCCTTCGGG-C-T-GCCA
35136226 GGATA-AGTCACTAGCATGAAATGTGCCTTCGGGCTGCCA
1 GGATATAGTCACTAGCA--AAA--TGCCTTCGGGCTGCCA
35136265 GGATATAGTCACTAGCAAAATGCCTT
1 GGATATAGTCACTAGCAAAATGCCTT
35136291 AGTTGAAACA
Statistics
Matches: 57, Mismatches: 3, Indels: 14
0.77 0.04 0.19
Matches are distributed among these distances:
36 6 0.11
38 3 0.05
39 16 0.28
40 21 0.37
41 1 0.02
42 10 0.18
ACGTcount: A:0.28, C:0.25, G:0.24, T:0.24
Consensus pattern (36 bp):
GGATATAGTCACTAGCAAAATGCCTTCGGGCTGCCA
Found at i:35144294 original size:47 final size:47
Alignment explanation
Indices: 35144240--35144781 Score: 861
Period size: 47 Copynumber: 11.5 Consensus size: 47
35144230 TGAATAAATA
* *
35144240 TGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATG
*
35144287 TGAAAGTGTATATATGTGATAAGGCCCAATGGCCGATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATG
* * *
35144334 TGAAAGTGTATATATGTGATATGGCCTAATGGCCGATGTAATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATG
*
35144381 TGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATG
* * *
35144428 TGAAAGTGTATATATATGTGATAAGGCCTAATAGCTGATGTGATGAATG
1 TGAAAGTG--TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATG
*
35144477 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATG
*
35144524 TGAAAGTGTATATATGTGACAAGGCCGAATGGCCGATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATG
* *
35144571 TAAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATG
*
35144618 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATG
*
35144665 TGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATG
* * * *
35144712 TGAAAGTGTATATATGTGAT-AGTGCCGAGTGGCCAACGTGATGGATG
1 TGAAAGTGTATATATGTGATAAG-GCCGAATGGCCGATGTGATGAATG
*
35144759 TGAAAGTGTATAAATGTGATAAG
1 TGAAAGTGTATATATGTGATAAG
35144782 TCCCGAAGGG
Statistics
Matches: 462, Mismatches: 29, Indels: 7
0.93 0.06 0.01
Matches are distributed among these distances:
46 2 0.00
47 415 0.90
48 2 0.00
49 43 0.09
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
TGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATG
Found at i:35146235 original size:23 final size:23
Alignment explanation
Indices: 35146209--35146315 Score: 58
Period size: 23 Copynumber: 5.2 Consensus size: 23
35146199 ATGTATCTGG
35146209 GCTAAGTCCCGAAGAGCATTCGT
1 GCTAAGTCCCGAAGAGCATTCGT
* * * *
35146232 GCT-AGT---G-A-TGTATCCGG
1 GCTAAGTCCCGAAGAGCATTCGT
35146249 GCTAAGTCCCGAAGAGCATTCGT
1 GCTAAGTCCCGAAGAGCATTCGT
* * * *
35146272 GCT-AGT---G-A-TGTATCCGG
1 GCTAAGTCCCGAAGAGCATTCGT
35146289 GCTAAGTCCCGAAGAGCATTCGT
1 GCTAAGTCCCGAAGAGCATTCGT
35146312 GCTA
1 GCTA
35146316 GTGATGTATC
Statistics
Matches: 56, Mismatches: 16, Indels: 24
0.58 0.17 0.25
Matches are distributed among these distances:
17 16 0.29
18 8 0.14
19 2 0.04
21 2 0.04
22 8 0.14
23 20 0.36
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.24
Consensus pattern (23 bp):
GCTAAGTCCCGAAGAGCATTCGT
Found at i:35146242 original size:40 final size:40
Alignment explanation
Indices: 35146198--35146513 Score: 535
Period size: 40 Copynumber: 7.9 Consensus size: 40
35146188 AATTGAGAGA
*
35146198 GATGTATCTGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
35146238 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
35146278 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
35146318 GATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
35146358 GATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
35146398 GATGTATCCGGGCTAAGTCCCGAAGAGCACTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
35146438 GATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * **
35146478 GATATATCCGTGCTAAACCCCGAAG-GCATTCGTGCT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
35146514 TGGACAAAAT
Statistics
Matches: 263, Mismatches: 13, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
39 11 0.04
40 252 0.96
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:35150576 original size:47 final size:47
Alignment explanation
Indices: 35150522--35151066 Score: 914
Period size: 47 Copynumber: 11.6 Consensus size: 47
35150512 TATTTGAATA
35150522 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
35150569 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
35150616 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
35150663 AATGTGAAAGTGTATATATGTGATAAGG-CTGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCT-AATGGCCGATGTGATG
35150710 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
35150759 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
35150806 AATGTGAAAGTGTATATATGTGATAA-GCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
35150852 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
35150899 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
35150946 GATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
35150993 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
35151040 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
35151067 TCCCGAAGGG
Statistics
Matches: 473, Mismatches: 20, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
46 47 0.10
47 381 0.81
49 43 0.09
50 2 0.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:35153716 original size:22 final size:21
Alignment explanation
Indices: 35153690--35153734 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 21
35153680 GTATGTACAG
35153690 ATTATTATGTT-TATGTTGTTTA
1 ATTA-TATGTTATATG-TGTTTA
35153712 ATTATATGTTAATATGTGTTTA
1 ATTATATGTT-ATATGTGTTTA
35153734 A
1 A
35153735 AATGATATTG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
21 6 0.29
22 11 0.52
23 4 0.19
ACGTcount: A:0.29, C:0.00, G:0.13, T:0.58
Consensus pattern (21 bp):
ATTATATGTTATATGTGTTTA
Found at i:35156018 original size:79 final size:80
Alignment explanation
Indices: 35155887--35156065 Score: 274
Period size: 79 Copynumber: 2.3 Consensus size: 80
35155877 TTCGGATGAC
35155887 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGATAAGTCCCAAAGGCA-T
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGATAAGTCCCAAAGGCATT
*
35155951 TGTGCTAG-TGACTAT
66 TGTGCGAGTTG-CTAT
* * * *
35155966 ATCCGGGCTAAGCCCCGAAGGCATTTGTGCTATTGACTATATCCGGGCTAAGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGATAAGTCCCAAAGGCATT
35156031 TGTGCGAGTTGCTAT
66 TGTGCGAGTTGCTAT
*
35156046 ATCC-GGCTAAATCCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGG
35156066 TACTTGGGTT
Statistics
Matches: 91, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
79 73 0.80
80 16 0.18
81 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGATAAGTCCCAAAGGCATT
TGTGCGAGTTGCTAT
Found at i:35156065 original size:39 final size:40
Alignment explanation
Indices: 35155887--35156065 Score: 274
Period size: 40 Copynumber: 4.5 Consensus size: 40
35155877 TTCGGATGAC
35155887 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
* *
35155927 ATCCGGGATAAGTCCCAAAGGCA-TTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
* *
35155966 ATCCGGGCTAAGCCCCGAAGGCATTTGTGCTATTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
35156006 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTAT
*
35156046 ATCC-GGCTAAATCCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGG
35156066 TACTTGGGTT
Statistics
Matches: 127, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
39 51 0.40
40 74 0.58
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
Found at i:35159907 original size:8 final size:9
Alignment explanation
Indices: 35159890--35159946 Score: 57
Period size: 8 Copynumber: 6.3 Consensus size: 9
35159880 TAAAGTTAAA
35159890 ATATATATT
1 ATATATATT
35159899 ATA-ATATT
1 ATATATATT
35159907 ATA-ATATT
1 ATATATATT
*
35159915 ATACT-TAAGT
1 ATA-TAT-ATT
35159925 ATATATATT
1 ATATATATT
35159934 ATATTATATT
1 ATA-TATATT
35159944 ATA
1 ATA
35159947 ATAAAACAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
8 16 0.39
9 10 0.24
10 15 0.37
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.51
Consensus pattern (9 bp):
ATATATATT
Found at i:35160042 original size:15 final size:14
Alignment explanation
Indices: 35159984--35160031 Score: 51
Period size: 14 Copynumber: 3.2 Consensus size: 14
35159974 AAATAAACAA
*
35159984 AAAGAAAGAAAAAAG
1 AAAGAAA-AAGAAAG
*
35159999 CAAACGAAATAGAAAG
1 -AAA-GAAAAAGAAAG
35160015 AAAGAAAAAGAAAG
1 AAAGAAAAAGAAAG
35160029 AAA
1 AAA
35160032 AGGAGAAGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
14 13 0.46
15 3 0.11
16 8 0.29
17 4 0.14
ACGTcount: A:0.75, C:0.04, G:0.19, T:0.02
Consensus pattern (14 bp):
AAAGAAAAAGAAAG
Found at i:35161207 original size:17 final size:17
Alignment explanation
Indices: 35161185--35161218 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
35161175 CTAGATCTAT
35161185 TCTATCGAGTTATTTGA
1 TCTATCGAGTTATTTGA
*
35161202 TCTATCGGGTTATTTGA
1 TCTATCGAGTTATTTGA
35161219 AGATGCACGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.21, C:0.12, G:0.21, T:0.47
Consensus pattern (17 bp):
TCTATCGAGTTATTTGA
Found at i:35161533 original size:41 final size:40
Alignment explanation
Indices: 35161487--35161673 Score: 130
Period size: 46 Copynumber: 4.6 Consensus size: 40
35161477 CGACTTCAAG
* *
35161487 TCGATGAGACACTGAGTGTCAATTTACTACTTCGAATTAAT
1 TCGATGAGACACTGGGTGTCAAATTACTACTT-GAATTAAT
* * * ** *
35161528 TCGATGAAATACTGGGTGCCAAATTACT--TTGGTTTAGT
1 TCGATGAGACACTGGGTGTCAAATTACTACTTGAATTAAT
*
35161566 T-GATGAGACACTGGGTGTCAAATTATTACTTAGAATTATCCGAT
1 TCGATGAGACACTGGGTGTCAAATTACTACTT-GAATTA----AT
** * *
35161610 GAAGATGAGACACTGGGTATCAAATTATTACTTAGAATT-AT
1 -TCGATGAGACACTGGGTGTCAAATTACTACTT-GAATTAAT
* * *
35161651 CCGATGAGGCACTGGGTGCCAAA
1 TCGATGAGACACTGGGTGTCAAA
35161674 CTGGTGTGTT
Statistics
Matches: 115, Mismatches: 22, Indels: 19
0.74 0.14 0.12
Matches are distributed among these distances:
37 22 0.19
38 6 0.05
39 4 0.03
40 22 0.19
41 25 0.22
44 1 0.01
46 35 0.30
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.32
Consensus pattern (40 bp):
TCGATGAGACACTGGGTGTCAAATTACTACTTGAATTAAT
Found at i:35161620 original size:46 final size:46
Alignment explanation
Indices: 35161567--35161657 Score: 173
Period size: 46 Copynumber: 2.0 Consensus size: 46
35161557 TGGTTTAGTT
*
35161567 GATGAGACACTGGGTGTCAAATTATTACTTAGAATTATCCGATGAA
1 GATGAGACACTGGGTATCAAATTATTACTTAGAATTATCCGATGAA
35161613 GATGAGACACTGGGTATCAAATTATTACTTAGAATTATCCGATGA
1 GATGAGACACTGGGTATCAAATTATTACTTAGAATTATCCGATGA
35161658 GGCACTGGGT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.35, C:0.13, G:0.21, T:0.31
Consensus pattern (46 bp):
GATGAGACACTGGGTATCAAATTATTACTTAGAATTATCCGATGAA
Found at i:35164439 original size:30 final size:28
Alignment explanation
Indices: 35164403--35164480 Score: 77
Period size: 30 Copynumber: 2.7 Consensus size: 28
35164393 ATATGGAAAA
35164403 ATTATAAAAATATTTAAAATAGAAAAATTT
1 ATTATAAAAATATTTAAAATA-AAAAA-TT
* * *
35164433 ATTATAAAATTATCATAAAATATAAAATT
1 ATTATAAAAATAT-TTAAAATAAAAAATT
* *
35164462 -GTAGAAAAATATTTAAAAT
1 ATTATAAAAATATTTAAAAT
35164481 TTATAAGAAA
Statistics
Matches: 40, Mismatches: 7, Indels: 5
0.77 0.13 0.10
Matches are distributed among these distances:
27 6 0.15
28 9 0.22
29 2 0.05
30 16 0.40
31 7 0.17
ACGTcount: A:0.59, C:0.01, G:0.04, T:0.36
Consensus pattern (28 bp):
ATTATAAAAATATTTAAAATAAAAAATT
Found at i:35164509 original size:36 final size:39
Alignment explanation
Indices: 35164422--35164497 Score: 97
Period size: 36 Copynumber: 2.0 Consensus size: 39
35164412 ATATTTAAAA
35164422 TAGAAAAATTTATTATAAAATTATCATAAAATATAAAATTG
1 TAGAAAAA--TATTATAAAATTATCATAAAATATAAAATTG
35164463 TAGAAAAATATT-TAAAATT-T-ATAAGAA-ATAAAATT
1 TAGAAAAATATTATAAAATTATCATAA-AATATAAAATT
35164498 TATTAAAAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
36 12 0.35
37 3 0.09
38 7 0.21
39 4 0.12
41 8 0.24
ACGTcount: A:0.58, C:0.01, G:0.05, T:0.36
Consensus pattern (39 bp):
TAGAAAAATATTATAAAATTATCATAAAATATAAAATTG
Found at i:35168154 original size:17 final size:18
Alignment explanation
Indices: 35168132--35168173 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
35168122 TAATAAAATT
35168132 ATAATTT-TATTATTT-TA
1 ATAATTTATATT-TTTATA
35168149 ATAATTTATATTTTTATA
1 ATAATTTATATTTTTATA
35168167 A-AATTTA
1 ATAATTTA
35168174 AAAAATTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 16 0.70
18 7 0.30
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
ATAATTTATATTTTTATA
Found at i:35179374 original size:48 final size:48
Alignment explanation
Indices: 35179314--35179497 Score: 194
Period size: 48 Copynumber: 3.9 Consensus size: 48
35179304 AGAGGTATGT
*
35179314 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGCCATTGATGCGA
1 GAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGCCATTGATGCGA
* * * * **
35179362 GAGCTAGTGTAAGACCATGTCT-AAGACATGGCTTGGCC-TTGATATGTA
1 GAGCCAGTGTAAGACCATGTCTGGA-ACATGGCATCGCCATTGATGCG-A
* * * * *
35179410 -AGCCAGTGTAAGACCACGTTTGGAACATGGCATCGACATTTATGCAA
1 GAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGCCATTGATGCGA
* * *
35179457 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATT
1 GAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGCCATT
35179498 TTACCCTCTT
Statistics
Matches: 108, Mismatches: 23, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
47 36 0.33
48 72 0.67
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGCCATTGATGCGA
Found at i:35179472 original size:95 final size:95
Alignment explanation
Indices: 35179309--35179488 Score: 297
Period size: 95 Copynumber: 1.9 Consensus size: 95
35179299 ATACTAGAGG
* * * *
35179309 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGCCATTGATGCGAGAGCTAGTGTAA
1 TATGTAAGCCAGTGTAAGACCACGTTTGGAACATGGCATCGACATTGATGCAAGAGCTAGTGTAA
35179374 GACCATGTCTAAGACATGGCTTGGCCTTGA
66 GACCATGTCTAAGACATGGCTTGGCCTTGA
*
35179404 TATGTAAGCCAGTGTAAGACCACGTTTGGAACATGGCATCGACATTTATGCAAGAGCTAGTGTAA
1 TATGTAAGCCAGTGTAAGACCACGTTTGGAACATGGCATCGACATTGATGCAAGAGCTAGTGTAA
**
35179469 GACCATGTCTGGGACATGGC
66 GACCATGTCTAAGACATGGC
35179489 ATCGGCATTT
Statistics
Matches: 78, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
95 78 1.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.26
Consensus pattern (95 bp):
TATGTAAGCCAGTGTAAGACCACGTTTGGAACATGGCATCGACATTGATGCAAGAGCTAGTGTAA
GACCATGTCTAAGACATGGCTTGGCCTTGA
Found at i:35184916 original size:37 final size:37
Alignment explanation
Indices: 35184866--35184940 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
35184856 CATCACGGAG
35184866 TGCCCTTTTCAATTATTTTGGATAGAGATCTGAGGTT
1 TGCCCTTTTCAATTATTTTGGATAGAGATCTGAGGTT
35184903 TGCCCTTTTCAATTATTTTGGATAGAGATCTGAGGTT
1 TGCCCTTTTCAATTATTTTGGATAGAGATCTGAGGTT
35184940 T
1 T
35184941 ACCTTGCGGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.21, C:0.13, G:0.21, T:0.44
Consensus pattern (37 bp):
TGCCCTTTTCAATTATTTTGGATAGAGATCTGAGGTT
Found at i:35191726 original size:26 final size:26
Alignment explanation
Indices: 35191690--35191741 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
35191680 GTAATCAATG
35191690 CACATTCTCATAGTTCCATCTTTCTT
1 CACATTCTCATAGTTCCATCTTTCTT
35191716 CACATTCTCATAGTTCCATCTTTCTT
1 CACATTCTCATAGTTCCATCTTTCTT
35191742 TTTCACAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.19, C:0.31, G:0.04, T:0.46
Consensus pattern (26 bp):
CACATTCTCATAGTTCCATCTTTCTT
Found at i:35195790 original size:43 final size:42
Alignment explanation
Indices: 35195723--35195814 Score: 107
Period size: 43 Copynumber: 2.1 Consensus size: 42
35195713 AAATGGTACA
*
35195723 ATGCCAATGTCCCAGACGTGGTCTTAC-ATGTAACCACATATCG
1 ATGCCAATGTCCCAGACGTAGTCTTACTA-G-AACCACATATCG
* *
35195766 ATGCCACTGTCCCAGACAG-AGTCTTACTCAGAATCACATATCG
1 ATGCCAATGTCCCAGAC-GTAGTCTTACT-AGAACCACATATCG
35195809 ATGCCA
1 ATGCCA
35195815 TGGTCTTACT
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
43 40 0.93
44 2 0.05
45 1 0.02
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.24
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACGTAGTCTTACTAGAACCACATATCG
Found at i:35205278 original size:40 final size:39
Alignment explanation
Indices: 35205216--35205433 Score: 296
Period size: 40 Copynumber: 5.5 Consensus size: 39
35205206 AAACCAAGTA
* * * * *
35205216 CCTTCGGGATTTA-ACCGGATATAGCTACTCACTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TACTCGCACAAATG
*
35205255 CCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTA-CTCGCACAAATG
35205295 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCACAAATG
*
35205335 CCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTA-CTCGCACAAATG
*
35205375 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACTCGCACAAATG
35205415 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
35205434 TTATCATCCG
Statistics
Matches: 163, Mismatches: 10, Indels: 11
0.89 0.05 0.06
Matches are distributed among these distances:
39 16 0.10
40 145 0.89
41 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATG
Found at i:35205348 original size:80 final size:79
Alignment explanation
Indices: 35205216--35205433 Score: 332
Period size: 80 Copynumber: 2.7 Consensus size: 79
35205206 AAACCAAGTA
* * * * *
35205216 CCTTCGGGATTTA-ACCGGATATAGCTACTCACTCGAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
35205280 TAGTTCGCACAAATG
65 TAGTTCGCACAAATG
35205295 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
35205360 TAGTTCGCACAAATG
65 TAGTTCGCACAAATG
*
35205375 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
35205434 TTATCATCCG
Statistics
Matches: 129, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
79 14 0.11
80 115 0.89
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
AGTTCGCACAAATG
Found at i:35213481 original size:40 final size:39
Alignment explanation
Indices: 35213437--35213640 Score: 266
Period size: 40 Copynumber: 5.1 Consensus size: 39
35213427 CAGGATTTAA
* *
35213437 CCGGATATAGCTACTCGCTCGAATGCCTTCGGGACTTAGC
1 CCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGC
*
35213477 CCGGATATAGTAGTTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTA-CTCGCACAAATGCCTTCGGGACTTAGC
35213517 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGC
* * *
35213557 CCGGATATAGTAGTTCGCACAAATTCCTTCGAGACTTAGC
1 CCGGATATAGTA-CTCGCACAAATGCCTTCGGGACTTAGC
* * *
35213597 CCAGA-ATTAGTCACTAGCACAAATGCCTTCGGAACTTAGC
1 CCGGATA-TAGT-ACTCGCACAAATGCCTTCGGGACTTAGC
35213637 CCGG
1 CCGG
35213641 TTATCATCCG
Statistics
Matches: 145, Mismatches: 14, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
39 4 0.03
40 139 0.96
41 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (39 bp):
CCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:35213570 original size:80 final size:79
Alignment explanation
Indices: 35213437--35213640 Score: 302
Period size: 80 Copynumber: 2.5 Consensus size: 79
35213427 CAGGATTTAA
* *
35213437 CCGGATATAGCTACTCGCTCGAATGCCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
*
35213502 CCTTCGGGACTTAGC
65 CCTTCGAGACTTAGC
*
35213517 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATT
1 CCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
35213582 CCTTCGAGACTTAGC
65 CCTTCGAGACTTAGC
* * *
35213597 CCAGA-ATTAGTCACTAGCACAAATGCCTTCGGAACTTAGCCCGG
1 CCGGATA-TAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
35213641 TTATCATCCG
Statistics
Matches: 114, Mismatches: 8, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
79 2 0.02
80 112 0.98
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (79 bp):
CCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATGC
CTTCGAGACTTAGC
Found at i:35215743 original size:41 final size:41
Alignment explanation
Indices: 35215686--35215767 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
35215676 AGAATACTTG
35215686 GAAGAGAAAGATAGCCATAATTTTTATTTAATTGAATCCTA
1 GAAGAGAAAGATAGCCATAATTTTTATTTAATTGAATCCTA
35215727 GAAGAGAAAGATAGCCATAATTTTTATTTAATTGAATCCTA
1 GAAGAGAAAGATAGCCATAATTTTTATTTAATTGAATCCTA
35215768 CATACTCAGA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.41, C:0.10, G:0.15, T:0.34
Consensus pattern (41 bp):
GAAGAGAAAGATAGCCATAATTTTTATTTAATTGAATCCTA
Found at i:35216487 original size:46 final size:46
Alignment explanation
Indices: 35216430--35216599 Score: 195
Period size: 46 Copynumber: 3.7 Consensus size: 46
35216420 CTCGAGGCCA
* *
35216430 ATGCATATCCCAAACATGTCTTACACTGGCTCTCATAATGTGGCTG
1 ATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAATGTGGCTG
* **
35216476 ATGCATGTCCCAGACATGTCTTACACTAGCCCTCGTC-TCAA--T-GCCA
1 ATGCATGTCCCAGACATGTCTTACACT-G-GCTC-TCAT-AATGTGGCTG
* *
35216522 ATGCCATGTCCCAGACATGGTCCTACACTGGCTATCATAATGTGGCTG
1 ATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATAATGTGGCTG
35216570 ATGCATGTCCCAGACATGTCTTACACTGGC
1 ATGCATGTCCCAGACATGTCTTACACTGGC
35216600 ACACAAATCT
Statistics
Matches: 103, Mismatches: 11, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
45 4 0.04
46 45 0.44
47 32 0.31
48 18 0.17
49 4 0.04
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAATGTGGCTG
Found at i:35216560 original size:94 final size:92
Alignment explanation
Indices: 35216426--35216596 Score: 288
Period size: 94 Copynumber: 1.8 Consensus size: 92
35216416 ACATCTCGAG
* *
35216426 GCCAATGCATATCCCAAACATGTCTTACACTGGCTCTCATAATGTGGCTGATGCATGTCCCAGAC
1 GCCAATGCATATCCCAAACATGTCCTACACTGGCTATCATAATGTGGCTGATGCATGTCCCAGAC
35216491 ATGTCTTACACTAGCCCTCGTCTCAAT
66 ATGTCTTACACTAGCCCTCGTCTCAAT
* *
35216518 GCCAATGCCATGTCCCAGACATGGTCCTACACTGGCTATCATAATGTGGCTGATGCATGTCCCAG
1 GCCAATG-CATATCCCAAACAT-GTCCTACACTGGCTATCATAATGTGGCTGATGCATGTCCCAG
35216583 ACATGTCTTACACT
64 ACATGTCTTACACT
35216597 GGCACACAAA
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 7 0.10
93 12 0.16
94 54 0.74
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (92 bp):
GCCAATGCATATCCCAAACATGTCCTACACTGGCTATCATAATGTGGCTGATGCATGTCCCAGAC
ATGTCTTACACTAGCCCTCGTCTCAAT
Found at i:35221542 original size:48 final size:48
Alignment explanation
Indices: 35221488--35221735 Score: 207
Period size: 48 Copynumber: 5.2 Consensus size: 48
35221478 GATACTAGGG
*
35221488 TATGTGAGCCAGCGTAAGACCATGTTTGGAACATGGCATCGGCCTTGA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCCTTGA
* * *
35221536 TATGTGAGCCAGTGTAAGACCACGTTTGGAACATGGCATTGGCATT--
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCCTTGA
* * * * ** * * *
35221582 TATGCAAGAGCTAGTGTAAGGCCATGTCTAGG-ACGCGGCTTTGGCCTCGA
1 TATG--TGAGCCAGTGTAAGACCATGT-TTGGAACATGGCATCGGCCTTGA
* * *
35221632 TACGTGAGCCAGTGTAAGACCTTGTTTGGAACATGGCATCGGTAC-TGA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGG-CCTTGA
* * ** * * * *
35221680 GATGAGAGCTGGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCCTTGA
*
35221728 CATGTGAG
1 TATGTGAG
35221736 AACATGTCTA
Statistics
Matches: 153, Mismatches: 39, Indels: 16
0.74 0.19 0.08
Matches are distributed among these distances:
46 4 0.03
47 4 0.03
48 138 0.90
49 4 0.03
50 3 0.02
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.25
Consensus pattern (48 bp):
TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCCTTGA
Found at i:35221735 original size:96 final size:95
Alignment explanation
Indices: 35221501--35221735 Score: 265
Period size: 96 Copynumber: 2.5 Consensus size: 95
35221491 GTGAGCCAGC
* * *
35221501 GTAAGACCATGTTTGGAACATGGCATCGGCCTTGATATGTGAGCCAGTGTAAGACCACGTTTGGA
1 GTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCCAGTGTAAGACCACGTTTGGA
* **
35221566 ACATGGCATTGGCATTTATGCAAGAGCTAGT
66 ACATGGCATCGGCATAGATG-AAGAGCTAGT
* * ** * * * **
35221597 GTAAGGCCATGTCTAGGACGCGGCTTTGGCCTCGATACGTGAGCCAGTGTAAGACCTTGTTTGGA
1 GTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCCAGTGTAAGACCACGTTTGGA
* *
35221662 ACATGGCATCGGTACTGAGATG-AGAGCTGGT
66 ACATGGCATCGGCA-T-AGATGAAGAGCTAGT
* *
35221693 GTAAGACCATGTCTGGGACATGGCATCAGCCTCGACATGTGAG
1 GTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAG
35221736 AACATGTCTA
Statistics
Matches: 111, Mismatches: 26, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
96 107 0.96
97 1 0.01
98 3 0.03
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.25
Consensus pattern (95 bp):
GTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCCAGTGTAAGACCACGTTTGGA
ACATGGCATCGGCATAGATGAAGAGCTAGT
Found at i:35225365 original size:41 final size:41
Alignment explanation
Indices: 35225277--35225465 Score: 213
Period size: 40 Copynumber: 4.7 Consensus size: 41
35225267 CGACAAATTA
* * *
35225277 GCTATATGTGGCACTTAGTGTGCGA-TTCGACATAGCTTTG
1 GCTATATATGGCACTTAGTGTGCGAGATCGAGATAGCTTTG
*
35225317 GCTATATATGGCACTTAGTGTGCGAGATCAAGATAGCTTTG
1 GCTATATATGGCACTTAGTGTGCGAGATCGAGATAGCTTTG
* * *
35225358 GCTATATATGGCACTTAGTTTGTGAGATCGAGAGAGC-TTG
1 GCTATATATGGCACTTAGTGTGCGAGATCGAGATAGCTTTG
* * * *
35225398 GCTATATATCGCACTTAGTGTGCGA-TTTGAGATAGCTTCG
1 GCTATATATGGCACTTAGTGTGCGAGATCGAGATAGCTTTG
* * * * *
35225438 ACTATGTACGACACTTAGTGTGCAAGAT
1 GCTATATATGGCACTTAGTGTGCGAGAT
35225466 ATCGAGTATT
Statistics
Matches: 124, Mismatches: 22, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
39 8 0.06
40 70 0.56
41 46 0.37
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (41 bp):
GCTATATATGGCACTTAGTGTGCGAGATCGAGATAGCTTTG
Found at i:35225713 original size:24 final size:24
Alignment explanation
Indices: 35225686--35225733 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
35225676 ATCATACGAG
35225686 CTTACTAAGCTATAAAGCTTACTT
1 CTTACTAAGCTATAAAGCTTACTT
35225710 CTTACTAAGCTATAAAGCTTACTT
1 CTTACTAAGCTATAAAGCTTACTT
35225734 TGTTTATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.21, G:0.08, T:0.38
Consensus pattern (24 bp):
CTTACTAAGCTATAAAGCTTACTT
Found at i:35232369 original size:39 final size:39
Alignment explanation
Indices: 35232306--35232581 Score: 426
Period size: 39 Copynumber: 7.1 Consensus size: 39
35232296 AATTTTATTA
*
35232306 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
* *
35232345 CCAGTACAAAGCTTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
* * *
35232384 CCAGCACGAAGCCTGCGGGTCTTTGGCCCGGATATATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
* *
35232423 CCAGCACAAAGCCTACGGGACTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
35232462 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
* * * *
35232501 CCAGCACGAAGCCTGTGGGTCTTTGGCCCGGATATATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
* *
35232540 CTAGCACAAAGCCTGCGGGTCTTTAGCCCGGATATATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
35232579 CCA
1 CCA
35232582 TACACATTTC
Statistics
Matches: 213, Mismatches: 24, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 213 1.00
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.25
Consensus pattern (39 bp):
CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
Found at i:35232512 original size:117 final size:117
Alignment explanation
Indices: 35232301--35232581 Score: 490
Period size: 117 Copynumber: 2.4 Consensus size: 117
35232291 CCCAAAATTT
* * *
35232301 TATTACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGTACAAAGCTTGCGGGTC
1 TATTTCCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACAAAGCCTGCGGGTC
35232366 TTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGTCTTTGGCCCGGATA
66 TTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGTCTTTGGCCCGGATA
*
35232418 TATTTCCAGCACAAAGCCTACGGGACTTTAGCCCGGATACATTTCCAGCACAAAGCCTGCGGGTC
1 TATTTCCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACAAAGCCTGCGGGTC
*
35232483 TTTAGCCCGGATACATTTCCAGCACGAAGCCTGTGGGTCTTTGGCCCGGATA
66 TTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGTCTTTGGCCCGGATA
* * *
35232535 TATTTCTAGCACAAAGCCTGCGGGTCTTTAGCCCGGATATATTTCCA
1 TATTTCCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCA
35232582 TACACATTTC
Statistics
Matches: 155, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
117 155 1.00
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.25
Consensus pattern (117 bp):
TATTTCCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACAAAGCCTGCGGGTC
TTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGTCTTTGGCCCGGATA
Found at i:35236417 original size:13 final size:13
Alignment explanation
Indices: 35236399--35236433 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
35236389 CCCAAAATGT
*
35236399 CACATGGCCAAGG
1 CACATGCCCAAGG
35236412 CACATGCCCAAGG
1 CACATGCCCAAGG
35236425 CACATGCCC
1 CACATGCCC
35236434 GTGTGCTAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.29, C:0.40, G:0.23, T:0.09
Consensus pattern (13 bp):
CACATGCCCAAGG
Found at i:35237185 original size:24 final size:24
Alignment explanation
Indices: 35237157--35237203 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
35237147 AATACACCTC
35237157 ATATAACATATATTGAGCTCACAA
1 ATATAACATATATTGAGCTCACAA
*
35237181 ATATAGCATATATTGAGCTCACA
1 ATATAACATATATTGAGCTCACA
35237204 TTTCATACAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.43, C:0.17, G:0.11, T:0.30
Consensus pattern (24 bp):
ATATAACATATATTGAGCTCACAA
Found at i:35237526 original size:46 final size:45
Alignment explanation
Indices: 35237439--35237566 Score: 123
Period size: 46 Copynumber: 2.8 Consensus size: 45
35237429 CATCTCGTAG
* * * ** *
35237439 CCGATGCATGTCCCAGACATGTCTTACGCTGGCTTATGTCTCCGGG
1 CCGATGCATGTCCTAGACATGTCTTACACTAGC-TATGTCTCAAGA
* *
35237485 CCTATGCATGTCCTAGACATGTCTTACACTAGC-AGTCGTCTCAATA
1 CCGATGCATGTCCTAGACATGTCTTACACTAGCTA-T-GTCTCAAGA
*
35237531 CCGATGCCATATCCTAGACATAGTCTTACACTAGCT
1 CCGATG-CATGTCCTAGACAT-GTCTTACACTAGCT
35237567 CACACAAGTG
Statistics
Matches: 67, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 39 0.58
47 13 0.19
48 13 0.19
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.29
Consensus pattern (45 bp):
CCGATGCATGTCCTAGACATGTCTTACACTAGCTATGTCTCAAGA
Found at i:35237825 original size:27 final size:27
Alignment explanation
Indices: 35237787--35237840 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
35237777 GACTAGTCGA
35237787 TTTAGTCGATTTGCTTTGCTTTCCCCC
1 TTTAGTCGATTTGCTTTGCTTTCCCCC
35237814 TTTAGTCGATTTGCTTTGCTTTCCCCC
1 TTTAGTCGATTTGCTTTGCTTTCCCCC
35237841 GGTCTAGGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.07, C:0.30, G:0.15, T:0.48
Consensus pattern (27 bp):
TTTAGTCGATTTGCTTTGCTTTCCCCC
Found at i:35255895 original size:50 final size:50
Alignment explanation
Indices: 35255755--35255898 Score: 216
Period size: 50 Copynumber: 2.9 Consensus size: 50
35255745 AGTTTCGATA
*
35255755 TGTGATCCCATGTAAGACCATGTCGGGGACATGGCATTGGCATCGATATG
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
*
35255805 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGGTATG
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
* * * * * *
35255855 TGTGAACCCATGTAAGACCATATCTAGGATATGACTTTGGCATC
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
35255899 TCACTATGTG
Statistics
Matches: 86, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 86 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (50 bp):
TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
Found at i:35258694 original size:48 final size:45
Alignment explanation
Indices: 35258549--35258720 Score: 134
Period size: 46 Copynumber: 3.7 Consensus size: 45
35258539 TATGTGCGCC
* * * *
35258549 AGTGTAAGACATGTCTGGGACATGCATCGGCTTTGAGACGAGAGCC
1 AGTGTAAGACATGTCTGAGACATGCATCGG-TTTGAGTCGAGTGCT
* * * * *
35258595 AGTGTAAGATATGTCT-AGGACATGCATCGGCCTCGAGATATGCA-TGTT
1 AGTGTAAGACATGTCTGA-GACATGCATCGG-TTTGAG-T-CG-AGTGCT
35258643 AGTGTAAGACAATGTCTGAGACATGGCATCGGTATTGAGTCGAGTGCT
1 AGTGTAAGAC-ATGTCTGAGACAT-GCATCGGT-TTGAGTCGAGTGCT
* *
35258691 AGTGTAAGACGTGTCT-AGGACACGCATCGG
1 AGTGTAAGACATGTCTGA-GACATGCATCGG
35258721 CCTTGATGAT
Statistics
Matches: 100, Mismatches: 16, Indels: 20
0.74 0.12 0.15
Matches are distributed among these distances:
46 40 0.40
47 10 0.10
48 25 0.25
49 13 0.13
50 12 0.12
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGAGACATGCATCGGTTTGAGTCGAGTGCT
Found at i:35258699 original size:96 final size:94
Alignment explanation
Indices: 35258548--35258859 Score: 291
Period size: 95 Copynumber: 3.3 Consensus size: 94
35258538 ATATGTGCGC
*
35258548 CAGTGTAAGACATGTCTGGGACAT-GCATCGGCTTTGAGACGAGAGCCAGTGTAAGATATGTCTA
1 CAGTGTAAGACATGTCTGGGACATGGCATCGGCTTTGAGACGAGAGCCAGTGTAAGACATGTCTA
*
35258612 GGACATGCATCGGCCTCGAGAT-ATGCAT-GT
66 GGACACGCATCGGCCT--AGATGATG-ATAGT
* * * * * *
35258642 TAGTGTAAGACAATGTCTGAGACATGGCATCGG-TATTGAGTCGAGTGCTAGTGTAAGACGTGTC
1 CAGTGTAAGAC-ATGTCTGGGACATGGCATCGGCT-TTGAGACGAGAGCCAGTGTAAGACATGTC
*
35258706 TAGGACACGCATCGGCCTTGATGATGATAGT
64 TAGGACACGCATCGGCCTAGATGATGATAGT
* * * * * *
35258737 CAGTGTAAGACCATGTTTGGGACATGGCATCGAC-TTGACATGTGAGCTAGTGTAAGACCATGTC
1 CAGTGTAAGA-CATGTCTGGGACATGGCATCGGCTTTGAGACGAGAGCCAGTGTAAGA-CATGTC
* * * *
35258801 TGGGACATGGCATCGG-CTTGA-CATG-T-GT
64 TAGGACA-CGCATCGGCCTAGATGATGATAGT
* * *
35258829 TAGTGTAAGACCTGTCTGGGACACGGCATCG
1 CAGTGTAAGACATGTCTGGGACATGGCATCG
35258860 ACACAGATGG
Statistics
Matches: 183, Mismatches: 26, Indels: 21
0.80 0.11 0.09
Matches are distributed among these distances:
91 18 0.10
92 11 0.06
93 1 0.01
94 36 0.20
95 61 0.33
96 56 0.31
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.26
Consensus pattern (94 bp):
CAGTGTAAGACATGTCTGGGACATGGCATCGGCTTTGAGACGAGAGCCAGTGTAAGACATGTCTA
GGACACGCATCGGCCTAGATGATGATAGT
Done.